Citrus Sinensis ID: 001060
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1169 | 2.2.26 [Sep-21-2011] | |||||||
| Q1JPZ7 | 752 | Pre-mRNA-processing facto | yes | no | 0.509 | 0.792 | 0.324 | 2e-73 | |
| Q86UA1 | 669 | Pre-mRNA-processing facto | yes | no | 0.483 | 0.844 | 0.313 | 3e-72 | |
| Q4KLU2 | 641 | Pre-mRNA-processing facto | N/A | no | 0.449 | 0.819 | 0.340 | 1e-71 | |
| Q8K2Z2 | 665 | Pre-mRNA-processing facto | yes | no | 0.480 | 0.845 | 0.314 | 5e-69 | |
| O74970 | 612 | Pre-mRNA-processing facto | yes | no | 0.366 | 0.699 | 0.329 | 8e-66 | |
| Q7KRW8 | 1066 | Pre-mRNA-processing facto | yes | no | 0.153 | 0.167 | 0.362 | 5e-33 | |
| P39682 | 629 | Pre-mRNA-processing facto | yes | no | 0.189 | 0.351 | 0.248 | 6e-24 | |
| O94260 | 434 | Putative G3BP-like protei | no | no | 0.334 | 0.900 | 0.243 | 1e-21 | |
| Q13283 | 466 | Ras GTPase-activating pro | no | no | 0.102 | 0.257 | 0.369 | 3e-14 | |
| Q5RB87 | 466 | Ras GTPase-activating pro | no | no | 0.102 | 0.257 | 0.369 | 3e-14 |
| >sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 207/637 (32%), Positives = 317/637 (49%), Gaps = 41/637 (6%)
Query: 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYW 138
P + E +RL +V+ N DF+ W LL+ E+ +++++ R+ +DAF +P CYGYW
Sbjct: 146 PELPTEYERLSKVVEDNPEDFNGWVYLLQYVEQ--ENHLLGSRKAFDAFFLHYPYCYGYW 203
Query: 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----AINTYGDPET-IRRLF 193
KKYAD E + G + EVY R +Q + SVD+WLHY F + G+ E+ IR +
Sbjct: 204 KKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASY 263
Query: 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 253
E + GTD+ S LW+ YI +E Q + + V IY R+L P Q ++F FK+
Sbjct: 264 EHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKFKDHVQ 323
Query: 254 SRPLSELRTAEEVDAAAVAVAAAPSETG---AEVKANEEEVQPDATEQTSKPVSAGLTEA 310
S + EE + V +A A +G AE +A EE+ P TE P +TE
Sbjct: 324 SNNPKHFLSEEEFVSLRVELANANKPSGDEDAETEAPGEEL-PPGTEDLPDPAKR-VTEI 381
Query: 311 EEL-EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD 369
E + K I R+EM+ + SK FE I+RPYFHVK L T+L NW YLDF +
Sbjct: 382 ENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELEN 441
Query: 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429
G +VV L+ERCLIACA Y E+WI+Y +E S S + + +A V + + P +HL
Sbjct: 442 GTPERVVVLFERCLIACALYEEFWIKYAKYLE-SYSTEAVRHIYKKACTVHLPKKPNVHL 500
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
A F+EQ G ID AR+ + V + PGL ++ ++ERR GN+E+A +L + AI
Sbjct: 501 LWAAFEEQQGSIDEARSILKAVEV-SVPGLAMVRLRRVSLERRHGNMEEAEALLQDAIT- 558
Query: 490 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS-KPLLEALIHFESIQ 548
G+ S++ + +R L V ++ +A+++L+++++ + + K L L S
Sbjct: 559 -NGRNSSES-SFYSVKLARQLVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELEYSGD 616
Query: 549 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRH 607
+ + + D+ L S+ S ++R+ ++FL FG D + A ++H
Sbjct: 617 VQQNEAEII-ACFDRALSSSMALESRITFSQRK------VDFLEDFGSDINTLMAAYEQH 669
Query: 608 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGV 667
RL S KR AE+ SE + + S A M ++ +
Sbjct: 670 QRLLAEQESF----KRKAEN--GSEEPDAKRQRTDDQSVASGQMMDMQANHAGYNYNNWY 723
Query: 668 QPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQT 704
Q +W W Q YG Y+ Y YP P T
Sbjct: 724 QYNSW-----GSQNSWGQYGQYGQYNQY---YPPPPT 752
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Involved in pre-mRNA splicing. Danio rerio (taxid: 7955) |
| >sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 192/613 (31%), Positives = 296/613 (48%), Gaps = 48/613 (7%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 80 EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 198
E R ++ EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPR 257
Query: 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYI 317
+L T E+ +A+ +G + ++ P E + P +TE E + + I
Sbjct: 258 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 314
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 377
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 315 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 374
Query: 378 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ
Sbjct: 375 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQ 433
Query: 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497
G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K S
Sbjct: 434 QGNINEARNILKTF-EECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 498 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 493 ----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEEN 548
Query: 557 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHR 615
+ DK + + ++R+ +EFL FG D + A D H L
Sbjct: 549 ILNCFDKAVHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLLKEQD 602
Query: 616 STSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS--------------QNPW 661
S KR AE+ K A + S Q + G ++ QNPW
Sbjct: 603 SL----KRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPW 658
Query: 662 AAGYGVQPQTWPP 674
G Q +PP
Sbjct: 659 NYG-----QYYPP 666
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Involved in pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 190/558 (34%), Positives = 286/558 (51%), Gaps = 33/558 (5%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
++ W V+A DF+ WT LL+ E+ ++++ R+ +DAFLA +P CYGYWKKYAD E
Sbjct: 57 EKYWKSVQAYPEDFNTWTYLLQYVEQ--ENHLFAARKAFDAFLAHYPYCYGYWKKYADLE 114
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYV 200
+ ++ + EVY R +Q +T SVD+W+HY F T DPET +R FE +
Sbjct: 115 KKNNNILEADEVYRRGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGTFEHAVVSA 174
Query: 201 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 260
G D+ S LW+ YI +E Q S V IY+R+L P Q +F FKE E
Sbjct: 175 GLDFRSDKLWEMYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF 234
Query: 261 RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAV 319
T+E+ +A+ G + P E+ P TE E + + I V
Sbjct: 235 LTSEKFIELRKELASMTLHGGTN------DDIPSGLEEIKDPAKRT-TEVENMRHRIIEV 287
Query: 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379
+E++ + SKI FE I+RPYFHVKPL +L NW YL+F +G ++V L+
Sbjct: 288 HQEIFNLNEHEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILF 347
Query: 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439
ERC+IACA Y E+WI+Y ME + S++ + RA HV + + P +HL A F+EQ G
Sbjct: 348 ERCVIACACYEEFWIKYAKYME-NHSVEGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQG 406
Query: 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499
+++ AR + + T GL ++ N+ERR GN+++A L E+A+ K S
Sbjct: 407 NLEEARRILKNIETAIE-GLAMVRLRRVNLERRHGNVKEAEHLLEEAMNKTKTSSESS-- 463
Query: 500 PMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 558
YA + +R L V N KAR++L +++ + + L L+ E KQ + E
Sbjct: 464 --FYAIKLARHLFKVQANVVKARKVLSNAIQKDKENTKLYLNLLEME-YNCDIKQNE--E 518
Query: 559 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRST 617
++ F + S + A R + S +EFL FG D + + H +L L H+
Sbjct: 519 NILAAF---DKAIKSPMSIAMRVKFSQRKVEFLEDFGSDVNKLLDTYNEHQKL-LKHQ-- 572
Query: 618 SELRKRHAEDFLASERAK 635
++ KR AE+ L AK
Sbjct: 573 -DIVKRKAENGLEQPEAK 589
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Involved in pre-mRNA splicing. Xenopus laevis (taxid: 8355) |
| >sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 193/614 (31%), Positives = 300/614 (48%), Gaps = 52/614 (8%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 78 EFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYPYCYGYWKKYAD 135
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPE---TIRRLFERGLA 198
E R ++ + EVY R +Q + SVD+W+HY F T GD E TIR FE +
Sbjct: 136 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVL 195
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
GTD+ S LW+ YI +E Q V +Y RIL P Q +F FKE +
Sbjct: 196 AAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPR 255
Query: 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYI 317
+L T E+ +A+ +G + ++ P E S + +TE E + + I
Sbjct: 256 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDISP--AKLITEIENMRHRII 311
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVV 376
+ +EM+ + SK FE I+RPYFHVKPL + +NW YL+F +G +VV
Sbjct: 312 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFEIENGTHERVV 371
Query: 377 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P H+ A F+E
Sbjct: 372 VLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEE 430
Query: 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496
Q G+I+ AR + E GL ++ ++ERR GN+E+A L + AI K S
Sbjct: 431 QQGNINEARIILRTF-EECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNES 489
Query: 497 QTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 555
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 490 S----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDLKQNEE 545
Query: 556 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPH 614
+ DK + + ++R+ +EFL FG D + A D H L
Sbjct: 546 NILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLL--- 596
Query: 615 RSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMG-------AYPSS-------QNP 660
+ KR AE+ SE + K+++ S AQ + G AY S QNP
Sbjct: 597 -KEQDTLKRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQAAYNYSAWYQYNYQNP 653
Query: 661 WAAGYGVQPQTWPP 674
W G Q +PP
Sbjct: 654 WNYG-----QYYPP 662
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Involved in pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/479 (32%), Positives = 244/479 (50%), Gaps = 51/479 (10%)
Query: 92 VKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
+ N DF AW L+ +E L ++ I +R VYD FL ++PL +GYWKKYAD
Sbjct: 21 INKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYAD 80
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203
E V + +YER + G+ +SVD+W +YC F + T GD +R LF +G VG D
Sbjct: 81 FEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLD 140
Query: 204 YLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 263
+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F + + S+P+ +L
Sbjct: 141 FLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQL--- 197
Query: 264 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG----LTEAEELE----- 314
P + A ++A D T + +K VSAG E ELE
Sbjct: 198 ------------LPPDVLASIRA-------DVTREPAKVVSAGSKQITVERGELEIEREM 238
Query: 315 --KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 372
+ + ++++K + +K FE+ I+RPYFHVK L +L NW YLDF E +GDF
Sbjct: 239 RARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDF 298
Query: 373 NKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVF--VKRLPEIHL 429
++ LYERCLI CA Y E+W RY M A ++ RA+ +F + R P I +
Sbjct: 299 QRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCIFASISR-PGIRV 357
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQA 486
A F+E G+I A+A YQ + T+ PG LEA++ +ERR +L +A ++
Sbjct: 358 QYALFEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNYDLTNAHAVLRS- 415
Query: 487 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545
I +GK ++ +L + + + + + E AR + + + + + + + FE
Sbjct: 416 -IINEGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQNAPALLDCRHFWISFLRFE 473
|
Function prior to stable branch point recognition by the U1 snRNP particle to facilitate or stabilize the U1 snRNP/5'-splice site interaction. Has a direct role in the assembly or function of a catalytically active spliceosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
D+ W VK +S+DF+ WT LL+ + + + R YD FL+ +P CYGYW+KYAD+E
Sbjct: 366 DKYWRAVKEDSTDFTGWTYLLQYVDN--ESDAEAAREAYDTFLSHYPYCYGYWRKYADYE 423
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPET-IRRLFERGLAYVGTDY 204
R G +V+ER ++ + SVD+W+HY + + +GD ET +R +ER + G ++
Sbjct: 424 KRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEF 483
Query: 205 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264
S LWD YI +E + + RV IY R+L P Q + +F +F++ ++ E
Sbjct: 484 RSDKLWDAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDLINQHDVTITLANE 543
Query: 265 EV 266
EV
Sbjct: 544 EV 545
|
Involved in pre-mRNA splicing. Drosophila melanogaster (taxid: 7227) |
| >sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 65/286 (22%)
Query: 128 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC-IFAINTYGDP 186
L ++PL +G+WK++A E ++ + K + V +V+ S+++W Y + +N +
Sbjct: 81 LRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDYLNVLCVNNPNET 140
Query: 187 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 246
+ IR FE +G +LS P WDK+IE+E Q+ W V IY I+E P+ Q R+F+
Sbjct: 141 DFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEYIIEVPLHQYARFFT 200
Query: 247 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 306
S+K+F + L+T +D +E
Sbjct: 201 SYKKFLNEK---NLKTTRNIDIVLRKTQTTVNEIW------------------------- 232
Query: 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366
+F+SK I++P+F++ + +LENW YL F+
Sbjct: 233 ----------------------QFESK-------IKQPFFNLGQVLNDDLENWSRYLKFV 263
Query: 367 -----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407
D +F V+ +++RCLI C + W+ Y+ + D
Sbjct: 264 TDPSKSLDKEF--VMSVFDRCLIPCLYHENTWMMYIKWLTKKNISD 307
|
Function prior to stable branch point recognition by the U1 snRNP particle to facilitate or stabilize the U1 snRNP/5'-splice site interaction. Has a direct role in the assembly or function of a catalytically active spliceosome. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 193/448 (43%), Gaps = 57/448 (12%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVD-GDSTESASSMLDIHSLVISLNF-- 778
++G FV +YY L ++P+ +H FY+ S++I D G+S +IH+ ++ L+F
Sbjct: 17 EIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQN 76
Query: 779 TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
+ I ++SL S NGG+++ V G + K R KF QTFFLA Q GYFVLNDIF FL
Sbjct: 77 CKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSR-KFAQTFFLAEQPNGYFVLNDIFRFL 135
Query: 839 DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSV----HIED 894
E+ + +P E E+ +A+ YV +++E++ S H +D
Sbjct: 136 REDVEEEEESPDAVE-------------KEKKDVASEPYVNGVQSQEHLPSAKEEGHYQD 182
Query: 895 DAT--DNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQ 952
A +N++ +E + +P E PV +V V + +
Sbjct: 183 PAATENNFATAALISNETDSLNQATLAVPEE-----------PVIQVTEASVPSFVSQQE 231
Query: 953 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVS- 1011
+ L + + + A+ + + +D P + SS +G +
Sbjct: 232 NQLQDEALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTV 291
Query: 1012 -------SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG 1064
+ P + + ++ L SV+V+N+P + ++ FG +K
Sbjct: 292 KGVNADQTQQPTAPYTQSNELLET------SVFVKNIPPETSDVSLKSAMSIFGPVK--A 343
Query: 1065 VFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN-TGSTSRGGRR 1123
+ RK A+V+F + VQ A+ +Q+ + IEERR +G ++ G +
Sbjct: 344 IEFARRKGT-----AYVDFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFNKSGDK 398
Query: 1124 GRGRGSYQTDAPRGRFGGRGLGRGSAQD 1151
+ +Y R G RG G +++
Sbjct: 399 -KSNDNYNGMKRNFRKGNRGAFDGRSKE 425
|
Probable scaffold protein that may be involved in mRNA transport. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 775
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 831 LNDIFHFLDE 840
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
|
May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 775
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 831 LNDIFHFLDE 840
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
|
May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1169 | ||||||
| 225437987 | 832 | PREDICTED: pre-mRNA-processing factor 39 | 0.610 | 0.858 | 0.775 | 0.0 | |
| 356505060 | 828 | PREDICTED: pre-mRNA-processing factor 39 | 0.609 | 0.859 | 0.732 | 0.0 | |
| 255571192 | 829 | Pre-mRNA-processing protein prp39, putat | 0.606 | 0.855 | 0.733 | 0.0 | |
| 356570672 | 828 | PREDICTED: pre-mRNA-processing factor 39 | 0.608 | 0.858 | 0.730 | 0.0 | |
| 449445628 | 831 | PREDICTED: pre-mRNA-processing factor 39 | 0.628 | 0.884 | 0.679 | 0.0 | |
| 147795953 | 826 | hypothetical protein VITISV_027789 [Viti | 0.587 | 0.831 | 0.717 | 0.0 | |
| 224070092 | 878 | predicted protein [Populus trichocarpa] | 0.547 | 0.728 | 0.759 | 0.0 | |
| 357510169 | 838 | Pre-mRNA-processing factor [Medicago tru | 0.604 | 0.843 | 0.671 | 0.0 | |
| 224129528 | 674 | predicted protein [Populus trichocarpa] | 0.546 | 0.948 | 0.751 | 0.0 | |
| 297843218 | 1328 | hypothetical protein ARALYDRAFT_333729 [ | 0.573 | 0.505 | 0.697 | 0.0 |
| >gi|225437987|ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1139 bits (2947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/730 (77%), Positives = 628/730 (86%), Gaps = 16/730 (2%)
Query: 2 DPNAVMQQAPG-VGAPGSGDNVATSENEAMGS-SQAAGYNS-MNGNVVNEAGNATSTENG 58
DPN VMQ+APG + S TS N A SQAAGY+S +NGN + EA N S +NG
Sbjct: 74 DPNTVMQEAPGSITYEASAGTTETSSNLAAAELSQAAGYDSSVNGNAITEARNFPSVDNG 133
Query: 59 TSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIV 118
+ + GAA + +GSVPAMS EEDRLW+IV+ANS DF+AWTAL+EETEK+A+DNI+
Sbjct: 134 NASDV-GGAAVEPQFEEGSVPAMSAEEDRLWSIVRANSLDFNAWTALIEETEKIAEDNIL 192
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 178
KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS++KVVEVYERAVQGVTYSVDIWLHYCIF
Sbjct: 193 KIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIEKVVEVYERAVQGVTYSVDIWLHYCIF 252
Query: 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238
AI+TYGDP+TIRRLFERGLAYVGTDYLS+PLWDK+IEYEY QQEWSR+AMIYTRILENP
Sbjct: 253 AISTYGDPDTIRRLFERGLAYVGTDYLSYPLWDKFIEYEYSQQEWSRLAMIYTRILENPN 312
Query: 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQ 298
QQLDRY +SFKE A SRPLSEL TAEE A A A + A + E E +PD EQ
Sbjct: 313 QQLDRYLNSFKELAGSRPLSELTTAEEAAATAGAF------SDANGQGIEGEARPDEVEQ 366
Query: 299 TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 358
+SKPVSAGLT+AEELEKYIA+REEMYKKAK+FDSKIIGFETAIRRPYFHV+PL+V ELEN
Sbjct: 367 SSKPVSAGLTDAEELEKYIAIREEMYKKAKDFDSKIIGFETAIRRPYFHVRPLNVAELEN 426
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418
WHNYLDFIER DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLA+NALARAT
Sbjct: 427 WHNYLDFIERGDDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQ 486
Query: 419 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
VFVKR PEIHLFAARF+EQ GDI G+RAAYQLVHTE SPGLLEAIIKHANME RLGNLED
Sbjct: 487 VFVKRQPEIHLFAARFREQKGDIPGSRAAYQLVHTEISPGLLEAIIKHANMEHRLGNLED 546
Query: 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538
AFSLYEQAIAIEKGKEHSQTLPML+AQYSRFL+LV+ N EKAR+ILV++L+HVQLSKPLL
Sbjct: 547 AFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFLYLVTGNTEKAREILVEALEHVQLSKPLL 606
Query: 539 EALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQ 598
EALIH ESIQS PK+ID L+ LVDKF+ +N +SP+ A+AAEREELS +FLEFL LFGDAQ
Sbjct: 607 EALIHLESIQSLPKRIDHLDSLVDKFIHTNPESPNAASAAEREELSSIFLEFLDLFGDAQ 666
Query: 599 LIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 658
IKKA+DRHA+LFL HRSTSEL+KRHAEDFLAS++AK+AKSYSG PSPAQSLMGAYPS+Q
Sbjct: 667 SIKKADDRHAKLFLHHRSTSELKKRHAEDFLASDKAKLAKSYSGVPSPAQSLMGAYPSAQ 726
Query: 659 NPWAAGYGVQPQTWPPATQAQAQQWN----QQAAYGAYSAYGSSYPTPQ--TSVPQNAAY 712
N WA+GYG+QPQ WP ATQAQ QQWN QQAAY AYS YGSSY PQ TSVPQ AAY
Sbjct: 727 NQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYSGYGSSYTHPQIPTSVPQTAAY 786
Query: 713 GAYPPAYPAQ 722
GAYPP YP Q
Sbjct: 787 GAYPPTYPVQ 796
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505060|ref|XP_003521310.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/739 (73%), Positives = 612/739 (82%), Gaps = 27/739 (3%)
Query: 2 DPNAVMQQA---------PGVGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGN 51
DPN+++QQA P GA S + A + A S+ + YNS +NG V N
Sbjct: 67 DPNSILQQAQFSATGESKPAGGAADSNEASAGVGSTAADSTMVSDYNSSVNGGVAGAVTN 126
Query: 52 ATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEK 111
+ ENG +L G+A ++ DG A+S EEDRLWNIV+ANS DF+AWT+L+EETEK
Sbjct: 127 TSGLENGNALENADGSADEKQQADG-YAALSAEEDRLWNIVRANSLDFTAWTSLIEETEK 185
Query: 112 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 171
A+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS+DKVVEVYERAVQGVTYSVD+
Sbjct: 186 AAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDM 245
Query: 172 WLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231
WLHYCIFAI TYGDP+T+RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ+W+R+A+IYT
Sbjct: 246 WLHYCIFAITTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAVIYT 305
Query: 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEV 291
RILENP QQLDRYFSSFKE A +RPLSELRTA+E A AVA SE A +A E EV
Sbjct: 306 RILENPNQQLDRYFSSFKELAGNRPLSELRTADE----AAAVAGVASE--ATGQATEGEV 359
Query: 292 QPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 351
PD E++ K VSAGLTEAEELEKYIA+REEMYKKAKEFDSKIIGFETAIRRPYFHV+PL
Sbjct: 360 HPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPL 419
Query: 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHN 411
+V ELENWHNYLDFIER+GD +K+VKLYERC+IACANYPEYWIRYVLCMEASGSMDLA+N
Sbjct: 420 NVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANN 479
Query: 412 ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
LARAT VFVKR PEIH+F ARFKEQ GDIDGARAAYQLVHTETSPGLLEAIIKHANME
Sbjct: 480 VLARATQVFVKRQPEIHIFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEY 539
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531
RL +EDAFSLYEQAIAIEKGKEHSQTLPML+AQYSRF++L S NAEKARQILV+ L++V
Sbjct: 540 RLEKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENV 599
Query: 532 QLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 589
LSKPLLEA++HFE+IQ PK+ IDFLE V KF+M NS+SP A+A EREELS +FLE
Sbjct: 600 LLSKPLLEAILHFEAIQPLPKRVDIDFLESWVVKFIMPNSESPGVASATEREELSSIFLE 659
Query: 590 FLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQS 649
FL LFGD Q IK+AEDRHA+LFLPHRS SEL+KRHAEDFLAS++ K +SYS A SPAQS
Sbjct: 660 FLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKAPRSYS-AQSPAQS 718
Query: 650 LMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQW----NQQAAYGAYSAYGSSYPTPQ-- 703
MGAYP++QN W + YGVQPQTWPP TQAQ QQW QQA+YGAY+ YG +Y Q
Sbjct: 719 GMGAYPNAQNQW-SNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLP 777
Query: 704 TSVPQNAAYGAYPPAYPAQ 722
TSVPQ+ AYGAYPPAYPAQ
Sbjct: 778 TSVPQSTAYGAYPPAYPAQ 796
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571192|ref|XP_002526546.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis] gi|223534107|gb|EEF35824.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/728 (73%), Positives = 604/728 (82%), Gaps = 19/728 (2%)
Query: 4 NAVMQQAPGVGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGNATSTENGTS-- 60
NA + P +G + +N A ++ + AAGYNS +NGN+ EAG TS ENG +
Sbjct: 77 NAAYETKPDIGMGTTSENAAATQAPPL----AAGYNSSINGNIGIEAG-ITSAENGIAAD 131
Query: 61 LGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKI 120
+G E GAAAGQ+ DGSV MSGEE+RLW+I+KANS DF AWTAL++ETEK+A D I+KI
Sbjct: 132 MGGE-GAAAGQQFADGSVTPMSGEEERLWSILKANSLDFDAWTALIDETEKVAGDKILKI 190
Query: 121 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 180
R+VYDAFLAEFPLCYGYWKKYADHEAR G MDK+VEVYERAV GVTYSVD+WLHYCIF I
Sbjct: 191 RKVYDAFLAEFPLCYGYWKKYADHEARTGYMDKIVEVYERAVLGVTYSVDMWLHYCIFTI 250
Query: 181 NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240
NTY DP+TIRRLFERGLAYVGTDYLS+PLWDKYIEYE M EWSRVAMIYTRILE P ++
Sbjct: 251 NTYEDPDTIRRLFERGLAYVGTDYLSYPLWDKYIEYEEMHAEWSRVAMIYTRILEIPNKR 310
Query: 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTS 300
LD +F+ FK FAAS LSELRTAEE AA V P + +ANE EV PDA EQ+S
Sbjct: 311 LDDFFNRFKAFAASHALSELRTAEEAAAATVL----PVSSVGGDQANEGEVHPDAAEQSS 366
Query: 301 KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWH 360
KP SAGLTEAEELEKYIAVREE+YKKAKEFDSKI FET IRRPYFHV+PL+V ELENWH
Sbjct: 367 KPASAGLTEAEELEKYIAVREEIYKKAKEFDSKICDFETGIRRPYFHVRPLNVAELENWH 426
Query: 361 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420
NYLDF+ER+ D NKVVKL+ERCLIACANYPEYWIRY LCMEASGSMDLA NALARAT VF
Sbjct: 427 NYLDFLEREDDLNKVVKLFERCLIACANYPEYWIRYTLCMEASGSMDLASNALARATQVF 486
Query: 421 VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 480
VKR PEIHLFAARF+EQNGD+ GARAAYQLVHTE +PGL EA++KHANME RLGNL+DA
Sbjct: 487 VKRRPEIHLFAARFREQNGDVPGARAAYQLVHTEIAPGLFEAVVKHANMEHRLGNLKDAC 546
Query: 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 540
SLYEQAIAIEKGKEHSQ LPMLYAQY+RFL+LVS N KAR+ILV++L++VQLSKPLLEA
Sbjct: 547 SLYEQAIAIEKGKEHSQVLPMLYAQYTRFLYLVSGNINKAREILVEALENVQLSKPLLEA 606
Query: 541 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI 600
IH ESIQS PK+ID+L+ LVDKF+M NSDS S A+A +REELSC+FLEFLG+FGDAQ I
Sbjct: 607 FIHIESIQSLPKRIDYLDSLVDKFVMPNSDSLSAASATDREELSCIFLEFLGMFGDAQSI 666
Query: 601 KKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNP 660
KKA+DRHA+LFLPHRS SE +KRHA+D+L S+++K+AK+Y APSP QSLMGAYPS+QN
Sbjct: 667 KKADDRHAKLFLPHRSKSEFKKRHADDYLTSDKSKIAKAYGDAPSPVQSLMGAYPSTQNQ 726
Query: 661 WAAGYGVQPQTWPPATQAQAQQWN----QQAAYGAYSAYGSSYPTPQ--TSVPQNAAYGA 714
WAAGYGVQPQ WPPATQAQ QQW QQAAY Y +Y SSY TPQ TS Q A YGA
Sbjct: 727 WAAGYGVQPQAWPPATQAQMQQWTPGYGQQAAYSTYGSYASSYTTPQAPTSAAQTATYGA 786
Query: 715 YPPAYPAQ 722
YPP YPAQ
Sbjct: 787 YPPTYPAQ 794
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570672|ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/739 (73%), Positives = 609/739 (82%), Gaps = 28/739 (3%)
Query: 2 DPNAVMQQA----PGVGAPGSGDNVATSENEAMGSSQA-----AGYNS-MNGNVVNEAGN 51
DPN+V+QQA G P A + +G++ A + YNS +NG VV N
Sbjct: 67 DPNSVLQQAHFSATGDSKPAGAAADANEASAGVGTTAAESTMVSDYNSSVNGGVVGAVAN 126
Query: 52 ATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEK 111
A ENG +L G+A ++L DG A+S EEDRLWNIV+ANS DF+AWT+L+EETEK
Sbjct: 127 AVGLENGNALENADGSADEKQLADGYA-ALSAEEDRLWNIVRANSLDFTAWTSLIEETEK 185
Query: 112 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 171
+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS+DKVVEVYERAVQGVTYSVD+
Sbjct: 186 -TEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDM 244
Query: 172 WLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231
WLHYCIFAI+TYGDP T+RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ+W+ +A+IYT
Sbjct: 245 WLHYCIFAISTYGDPNTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWACLAVIYT 304
Query: 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEV 291
RILENP QQLDRYFSSFKE A +RPLSELRTA+E A AVA SE A +A E EV
Sbjct: 305 RILENPNQQLDRYFSSFKELAGNRPLSELRTADE----AAAVAGVASE--ATGQATEGEV 358
Query: 292 QPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 351
PD E++ K VSAGLTEAEELEKYIA+REEMYKKAKEFDSKIIGFETAIRRPYFHV+PL
Sbjct: 359 HPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPL 418
Query: 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHN 411
+V ELENWHNYLDFIER+GD +K+VKLYERC+IACANYPEYWIRYVLCMEASGSMDLA+N
Sbjct: 419 NVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANN 478
Query: 412 ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
LARAT VFVKR PEIHLF ARFKEQ GDIDGARAAYQLVHTETSPGLLEAIIKHANME
Sbjct: 479 VLARATQVFVKRQPEIHLFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEY 538
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531
RLG +EDAFSLYE AIAIEKGKEHSQTLPML+AQYSRF++L S NAEKARQILV+ L++V
Sbjct: 539 RLGKMEDAFSLYEHAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENV 598
Query: 532 QLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 589
LSKPLLEAL+HFE+IQ PK+ +DFLE V KF+M NS+S A+ EREELS +FLE
Sbjct: 599 LLSKPLLEALLHFEAIQPLPKRVGVDFLESWVVKFIMPNSESAGVASPTEREELSSIFLE 658
Query: 590 FLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQS 649
FL LFGD Q IK+AEDRHA+LFLPHRS SEL+KRHAEDFL S++ K+ +SYS A SPAQS
Sbjct: 659 FLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPRSYS-AQSPAQS 717
Query: 650 LMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQW----NQQAAYGAYSAYGSSYPTPQ-- 703
MGAYP++QN W YGVQPQTWPP TQAQ QQW QQA+YGAY+ YGS+Y Q
Sbjct: 718 AMGAYPNAQNQW-TNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGSNYVNSQLP 776
Query: 704 TSVPQNAAYGAYPPAYPAQ 722
TSVPQ+ AYGAYPPAYPAQ
Sbjct: 777 TSVPQSTAYGAYPPAYPAQ 795
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445628|ref|XP_004140574.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus] gi|449487353|ref|XP_004157584.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/767 (67%), Positives = 610/767 (79%), Gaps = 32/767 (4%)
Query: 2 DPNAVMQ---------QAPGVGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGN 51
DPN+V Q V N A SE AM ++ + G++S +NG++ E+ +
Sbjct: 67 DPNSVQQGNHVVEVDETKADVAVTDHSQNAAVSEISAMETAASVGHDSSVNGSIATESVH 126
Query: 52 ATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEK 111
A+S ENGT + + Q VDGSVP +S EEDRLWNIV+ANS DF++WT+L+EETEK
Sbjct: 127 ASSVENGTVVENANEGPEEQHFVDGSVPPLSAEEDRLWNIVRANSLDFNSWTSLIEETEK 186
Query: 112 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 171
+A+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR GS DKVVEVYERAV GVTYSVDI
Sbjct: 187 VAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDI 246
Query: 172 WLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231
WLHYCIF + TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW R+AMIYT
Sbjct: 247 WLHYCIFTLGTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWGRLAMIYT 306
Query: 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEV 291
RILENP QQLDRYF+SFKE AASRPLSEL+++EE AV SE G +V N EE
Sbjct: 307 RILENPNQQLDRYFNSFKELAASRPLSELKSSEE------AVVDVQSEAGDQV--NGEEG 358
Query: 292 QPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 351
P+A E +SK VSAGLTEAEELEKYIA+REE+YKKAKEFDSKIIGFETAIRRPYFHV+PL
Sbjct: 359 HPEAAEPSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPL 418
Query: 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHN 411
+V EL+NWH+YLDFIE++GD NKVVKLYERC+IACANYPEYWIRY+LCM+AS SMDLA+N
Sbjct: 419 NVAELDNWHSYLDFIEQEGDLNKVVKLYERCVIACANYPEYWIRYILCMQASDSMDLANN 478
Query: 412 ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
ALARA+ VFVKR PEIHLFAARFKEQNGDI GARA+YQLVH+E SPGLLEAIIKHANME
Sbjct: 479 ALARASQVFVKRRPEIHLFAARFKEQNGDIAGARASYQLVHSEISPGLLEAIIKHANMEH 538
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531
RLGNLEDA+S+YEQAIAIE+GKEHS+ L +LYAQYSRF +LV +N KAR+IL +++H
Sbjct: 539 RLGNLEDAYSVYEQAIAIERGKEHSRALSLLYAQYSRFQNLVCKNEGKAREILDKAVEHG 598
Query: 532 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 591
+LSKPL+EALIHFE+IQS+ K+ID+L+ LV+K ++ N+++ + +A+ REELS +FLEFL
Sbjct: 599 ELSKPLIEALIHFEAIQSTGKRIDYLDSLVEKVIVPNTENATVVSASMREELSSIFLEFL 658
Query: 592 GLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLM 651
LFGD Q IKKAEDRH +LF+ H+STSEL+KR A+D+LASE+AKMAK+Y SPAQSLM
Sbjct: 659 NLFGDVQSIKKAEDRHVKLFISHKSTSELKKRLADDYLASEKAKMAKTYPSVASPAQSLM 718
Query: 652 GAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWN---QQAAYGAYSAYGSSYPTPQ--TSV 706
G YP+SQN WAA YGVQPQ WPP QAQ QQW Q+A +YS YGS+Y PQ TSV
Sbjct: 719 GVYPTSQNQWAASYGVQPQAWPPVAQAQGQQWAPGYTQSA--SYSGYGSTYTNPQVSTSV 776
Query: 707 PQNAAYGAYPPAYPAQVGSYFVGQYYQ-------VLQQQPDLVHQFY 746
Q + Y YPP YPAQ +Y Y Q QQP V Q Y
Sbjct: 777 SQASTYATYPPTYPAQQQAYSAQTYAQPTAQATVAPSQQPASVAQPY 823
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795953|emb|CAN60862.1| hypothetical protein VITISV_027789 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/751 (71%), Positives = 601/751 (80%), Gaps = 64/751 (8%)
Query: 2 DPNAVMQQAPG-VGAPGSGDNVATSENEAMGS-SQAAGYNS-MNGNVVNEAGNATSTENG 58
DPN VMQ+APG + S TS N A SQAAGY+S +NGN + EA N S +NG
Sbjct: 74 DPNTVMQEAPGSITYEASAGATETSSNLAAAELSQAAGYDSSVNGNAITEARNFPSVDNG 133
Query: 59 TSLGIESGAAAGQELVDGSV---------------------PAMSGEEDRLWNIVKANSS 97
+ + GAA + +GSV PAMS EEDRLW+IV+ANS
Sbjct: 134 NASDV-GGAAVESQFEEGSVVQILNVESLFFVLSLAVPFQVPAMSAEEDRLWSIVRANSL 192
Query: 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157
DF+AWTAL+EETEK+A+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS++KVVEV
Sbjct: 193 DFNAWTALIEETEKIAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIEKVVEV 252
Query: 158 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217
YERAVQGVTYSVDIWLHYCIFAI+TYGDP+TIRRLFERGLAYVGTDYLS+PLWDK+IEYE
Sbjct: 253 YERAVQGVTYSVDIWLHYCIFAISTYGDPDTIRRLFERGLAYVGTDYLSYPLWDKFIEYE 312
Query: 218 YMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277
Y QQEWSR+AMIYTRILENP QQLDRY +SFKE A SRPLSEL TAEE A A A
Sbjct: 313 YSQQEWSRLAMIYTRILENPNQQLDRYLNSFKELAGSRPLSELTTAEEAAATAGAF---- 368
Query: 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 337
+ A + E E +PD EQ+SKPVSAGLT+AEELEKYIA+REEMYKKAK+FDSKIIGF
Sbjct: 369 --SDANGQGIEGEARPDEVEQSSKPVSAGLTDAEELEKYIAIREEMYKKAKDFDSKIIGF 426
Query: 338 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397
ETAIRRPYFHV+PL+V ELENWHNYLDFIER DFNKVVKLYERCLIACANYPEYWIRYV
Sbjct: 427 ETAIRRPYFHVRPLNVAELENWHNYLDFIERGDDFNKVVKLYERCLIACANYPEYWIRYV 486
Query: 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 457
LCMEASGSMDLA+NALARAT VFVKR PEIHLFAARF+EQ GDI G+RAAYQLVHTE SP
Sbjct: 487 LCMEASGSMDLANNALARATQVFVKRQPEIHLFAARFREQKGDIPGSRAAYQLVHTEISP 546
Query: 458 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517
GLLEAIIKHANME RLGNLE AFSLYEQAIAIEKGKEHSQTLPML+AQYSRFL+LV+ N
Sbjct: 547 GLLEAIIKHANMEHRLGNLEXAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFLYLVTGNT 606
Query: 518 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANA 577
EKAR+ILV++L+HVQLSKPLLEALIH ESIQS PK+ID L+ LVDKF+ +N +SP+ A+A
Sbjct: 607 EKAREILVEALEHVQLSKPLLEALIHLESIQSLPKRIDHLDSLVDKFIHTNPESPNAASA 666
Query: 578 AEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMA 637
AEREELS +FLE++ + KRHAEDFLAS++AK+A
Sbjct: 667 AEREELSSIFLEYI---------------------------RVEKRHAEDFLASDKAKLA 699
Query: 638 KSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWN----QQAAYGAYS 693
KSYSG PSPAQSLMGAYPS+QN WA+GYG+QPQ WP ATQAQ QQWN QQAAY AYS
Sbjct: 700 KSYSGVPSPAQSLMGAYPSAQNQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYS 759
Query: 694 AYGSSYPTPQ--TSVPQNAAYGAYPPAYPAQ 722
YGSSY PQ TSVPQ AAYGAYPP YP Q
Sbjct: 760 GYGSSYTHPQIPTSVPQTAAYGAYPPTYPVQ 790
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070092|ref|XP_002303113.1| predicted protein [Populus trichocarpa] gi|222844839|gb|EEE82386.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/652 (75%), Positives = 557/652 (85%), Gaps = 12/652 (1%)
Query: 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 136
+VP MS EED LW+IVKANS DF AWTAL++ETEK+A D I+KIR+VYDAFL EFPLCYG
Sbjct: 198 TVPEMSAEEDHLWSIVKANSLDFDAWTALIDETEKVAGDRILKIRKVYDAFLVEFPLCYG 257
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 196
YWKKYADHEAR+G MDKVVEVYERAV GVTYSVDIWLHYC+FAI+TYGDPET+RRLFERG
Sbjct: 258 YWKKYADHEARLGFMDKVVEVYERAVLGVTYSVDIWLHYCMFAISTYGDPETVRRLFERG 317
Query: 197 LAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP 256
LAY GTDY+S+PLWDKYIEYE + EW RVAMIYTRILE P ++LD YF+ FK FAASRP
Sbjct: 318 LAYAGTDYMSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYFNRFKAFAASRP 377
Query: 257 LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316
LSEL+TAEE A A ++ S+ A+E EV PDA EQ SKPV+AGLTEAEELEKY
Sbjct: 378 LSELKTAEEAAAVAPVLSEDRSQ------ADEGEVHPDAAEQPSKPVNAGLTEAEELEKY 431
Query: 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 376
IA+REE+YKKAKEFD+KI FE AIRRPYFHV+PL+V ELENWHNYLD IER+ DFNKVV
Sbjct: 432 IAIREEIYKKAKEFDNKIFDFENAIRRPYFHVRPLNVAELENWHNYLDDIEREDDFNKVV 491
Query: 377 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436
KLYERC+IACANY EYWIRYVLCMEA+G+MDLA+NALARAT VFVKR PEIH+FAAR KE
Sbjct: 492 KLYERCVIACANYTEYWIRYVLCMEATGNMDLANNALARATQVFVKRQPEIHIFAARLKE 551
Query: 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496
QNGD+ GARAAYQ+VH E +PGLLEAIIKHANME RLGNLEDAFSLYEQAIAIEKGKEHS
Sbjct: 552 QNGDVSGARAAYQVVHAEIAPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHS 611
Query: 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556
Q LP LYAQY+RF++L S N EKAR+IL++ L++ Q SKPLLEALIHFE+ PK+ID+
Sbjct: 612 QVLPALYAQYARFVYLASNNVEKAREILLEGLENAQYSKPLLEALIHFETFLPLPKRIDY 671
Query: 557 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRS 616
L+ LVDKF++ +SDS + A+AAEREELSC+FLEFLG+FGDAQ IKKA DRHA+ FLPHRS
Sbjct: 672 LDSLVDKFILPSSDSVNAASAAEREELSCIFLEFLGIFGDAQSIKKAADRHAKFFLPHRS 731
Query: 617 TSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPAT 676
SEL+KRHAED+LAS++AKMAK Y A SPAQSLMGAY S+QN W AGYGVQPQ WPPAT
Sbjct: 732 KSELKKRHAEDYLASDKAKMAKPYPDATSPAQSLMGAYASAQNQWTAGYGVQPQAWPPAT 791
Query: 677 QAQAQQW----NQQAAYGAYSAYGSSYPTPQ--TSVPQNAAYGAYPPAYPAQ 722
Q Q QQW NQQAAYGAYS YG SYP PQ TSV Q AAYG YPP YPAQ
Sbjct: 792 QVQTQQWAPGYNQQAAYGAYSGYGGSYPNPQAPTSVAQGAAYGGYPPTYPAQ 843
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510169|ref|XP_003625373.1| Pre-mRNA-processing factor [Medicago truncatula] gi|355500388|gb|AES81591.1| Pre-mRNA-processing factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/757 (67%), Positives = 591/757 (78%), Gaps = 50/757 (6%)
Query: 2 DPNAVMQ------QAPGVGAPGSGDNVATSENEAMGSSQ-AAGYNSMNGNVVNEAGNATS 54
DPN+V+Q A ++ + EAM S+ +A ++S+NG+V +
Sbjct: 65 DPNSVLQAQFSATNESKQAAEVPNEDSSLVGKEAMDSAMVSADHSSVNGSV-----DTVG 119
Query: 55 TENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 114
ENG + +A ++L D + A+S EEDRLWNIV ANSSDF+AWT+L++ETEK+A+
Sbjct: 120 LENGNASENVDESADEKQLTD-AYAALSAEEDRLWNIVTANSSDFTAWTSLIDETEKVAE 178
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174
+NI+K+RRVYDAFLAEFPLCYGYWKKYADHEAR+GS DKVVEVYERAVQGVTYSVD+WLH
Sbjct: 179 NNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLH 238
Query: 175 YCIFAINTYGDPETIRR------------------LFERGLAYVGTDYLSFPLWDKYIEY 216
YCIFAI+TYGDP+T+RR LFERGLAYVGTDYLSFPLWDKYIEY
Sbjct: 239 YCIFAISTYGDPDTVRRDRATVPSPFYGGKALMGLLFERGLAYVGTDYLSFPLWDKYIEY 298
Query: 217 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 276
EYMQQ+W+R+AMIYTRILENP QQLDRYF+SFKE A++RPLSELRTA+E A AVA
Sbjct: 299 EYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTADE----AAAVAGV 354
Query: 277 PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIG 336
SE G + + E EV PD + + KP SAGLTEAEELEKYIA+REEMYKKAKEFDSKIIG
Sbjct: 355 VSE-GID-QGVEGEVHPDGADNSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIG 412
Query: 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396
FET IRRPYFHV+PL++ ELENWHNYLDFIER+GD +K+VKLYERC+IACANYPEYWIRY
Sbjct: 413 FETTIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRY 472
Query: 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456
VLCMEAS SMDLA+N LARA+ VFVKR PEIHLF ARFKEQ GDI GARAAYQLVHTE S
Sbjct: 473 VLCMEASESMDLANNVLARASQVFVKRQPEIHLFCARFKEQAGDIVGARAAYQLVHTEIS 532
Query: 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516
PGLLEAII+HANME RLG LEDAFSLYEQAIAIEKGKEHSQTLPML+AQYSRF++L S N
Sbjct: 533 PGLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGN 592
Query: 517 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPST 574
+EKAR+ILV L++ LSKPLLEAL+HFE+IQ PK+ IDFLE LV KF+ N ++P
Sbjct: 593 SEKAREILVGGLENASLSKPLLEALLHFEAIQPQPKRVDIDFLESLVVKFITPNPENPGV 652
Query: 575 ANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERA 634
A+A EREELS +FLEFL LFGD Q IK+AEDRHA+LFLP+R SEL+KRHAEDFLAS++
Sbjct: 653 ASATEREELSNIFLEFLNLFGDVQSIKRAEDRHAKLFLPNRGLSELKKRHAEDFLASDKT 712
Query: 635 KMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQW----NQQ---- 686
K++++YS A SPAQS+ GAYP+ N W YGVQPQTWP TQAQ QQW QQ
Sbjct: 713 KVSRAYS-AQSPAQSVAGAYPNGPNQW-PNYGVQPQTWPATTQAQGQQWPAGYTQQQAAA 770
Query: 687 -AAYGAYSAYGSSYPTPQTSVPQNAAYGAYPPAYPAQ 722
A + P SVPQ+ AYGAYPPAYPAQ
Sbjct: 771 SYGAYAGYGGNYANPQLPASVPQSTAYGAYPPAYPAQ 807
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129528|ref|XP_002320608.1| predicted protein [Populus trichocarpa] gi|222861381|gb|EEE98923.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/644 (75%), Positives = 544/644 (84%), Gaps = 5/644 (0%)
Query: 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK 140
MS EEDRLWNIVKANS DF AWTAL++ETEK+A D I+KIR+VYDAFL EFPLCYGYWKK
Sbjct: 1 MSAEEDRLWNIVKANSLDFDAWTALIDETEKVAGDKILKIRKVYDAFLGEFPLCYGYWKK 60
Query: 141 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV 200
YADHEAR+G MDK VEVYERAV GVTYSVDIWLHYC+ AI+ YGDPETIRRLFERGLAYV
Sbjct: 61 YADHEARLGFMDKFVEVYERAVLGVTYSVDIWLHYCMSAISMYGDPETIRRLFERGLAYV 120
Query: 201 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 260
GTDYLS+PLWDKYIEYE + EW RVAMIYTRILE P ++LD YF+ FK FAASRPL+EL
Sbjct: 121 GTDYLSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYFNRFKAFAASRPLAEL 180
Query: 261 RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 320
RTAEE AAA A + G +A+E EV PDA E SKPVSAGL EAEELEKYIAVR
Sbjct: 181 RTAEEAAAAAAAARTLLEDGG---QADEGEVHPDAAELPSKPVSAGLGEAEELEKYIAVR 237
Query: 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 380
EE+YKKAKEFDSKI FE AIRRPYFHV+PL+V ELENWHNYLD IER+ DFNKVVKLYE
Sbjct: 238 EEIYKKAKEFDSKISDFENAIRRPYFHVRPLNVAELENWHNYLDMIEREDDFNKVVKLYE 297
Query: 381 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440
RC+IACANY EYWIRYVLCMEA G+MDLA+NALARAT VFVKR PEIHLFAARFKEQNGD
Sbjct: 298 RCIIACANYTEYWIRYVLCMEAYGNMDLANNALARATQVFVKRQPEIHLFAARFKEQNGD 357
Query: 441 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500
I GARAAY++VH E +PGLLEAI KHANME RLGNLEDAFSLYEQAIAIEKGKEHSQ LP
Sbjct: 358 IPGARAAYRVVHAEIAPGLLEAITKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQVLP 417
Query: 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 560
LYAQY+RF++L S+N EKAR++LV++L++ Q SKPLLEALIH E+ PK+ID+++ L
Sbjct: 418 ALYAQYARFIYLASKNVEKAREVLVEALENAQFSKPLLEALIHLETFLPQPKRIDYIDSL 477
Query: 561 VDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSEL 620
VD F++++SDS + A+A+EREELSC+FLEFLG+FGDAQ IKKA DRHA+ FLPH S SEL
Sbjct: 478 VDNFILTSSDSVNAASASEREELSCIFLEFLGIFGDAQSIKKAADRHAKFFLPHSSKSEL 537
Query: 621 RKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQA 680
+KRHAED+L+S+R K+AK YS A SPAQSLMGAY S+QN W AGYG+QPQ WPPATQ QA
Sbjct: 538 KKRHAEDYLSSDREKIAKPYSDATSPAQSLMGAYASAQNQWTAGYGLQPQAWPPATQVQA 597
Query: 681 QQWNQQAAYGAYSAYGSSYPTPQ--TSVPQNAAYGAYPPAYPAQ 722
QQW AY YG SY +PQ TS Q AAYGAYPP YPAQ
Sbjct: 598 QQWTPGYNQAAYGGYGGSYTSPQVPTSGAQGAAYGAYPPTYPAQ 641
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843218|ref|XP_002889490.1| hypothetical protein ARALYDRAFT_333729 [Arabidopsis lyrata subsp. lyrata] gi|297335332|gb|EFH65749.1| hypothetical protein ARALYDRAFT_333729 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/695 (69%), Positives = 563/695 (81%), Gaps = 24/695 (3%)
Query: 41 MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFS 100
+NG V E GNAT T+ E G G L S EE+RLWNIV+ANSS+F+
Sbjct: 50 VNGTVPVENGNATDNVAVTAPAAEHGDNPGSTL--------SPEEERLWNIVRANSSEFN 101
Query: 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160
AWTAL++ETE++AQDNI KIR+VYDAFLAEFPLCYGYWKK+ADHEARVG+MDKVVEVYER
Sbjct: 102 AWTALIDETERIAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYER 161
Query: 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 220
AVQGVTYSVDIWLHYC FAINTYGDP+TIRRLFER L YVGTD+LS PLWDKYIEYEYMQ
Sbjct: 162 AVQGVTYSVDIWLHYCTFAINTYGDPDTIRRLFERALVYVGTDFLSSPLWDKYIEYEYMQ 221
Query: 221 QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV---AVAAAP 277
Q+WSRVAMIYTRILENPIQ LDRYFSS KE A +RPLSELR+AEE AA V A +AP
Sbjct: 222 QDWSRVAMIYTRILENPIQNLDRYFSSLKELAETRPLSELRSAEESAAAVVAGDASESAP 281
Query: 278 SETGAEVKANEEEVQPD-ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIG 336
SE G KA+E Q D +TEQ+ K SA T+ EEL+KY+ +RE MY K+KEF+SKIIG
Sbjct: 282 SEPGG--KADEGRSQVDGSTEQSPKLESASSTDPEELKKYVGIREAMYIKSKEFESKIIG 339
Query: 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396
+E AIRRPYFHV+PL+V ELENWHNYLDF ERDGDFNKVVKLYERC++ACANYP YWIRY
Sbjct: 340 YEMAIRRPYFHVRPLNVAELENWHNYLDFTERDGDFNKVVKLYERCVVACANYPGYWIRY 399
Query: 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456
V M ASGS DLA NALARAT VFVK+ PEIHLFAAR KE+NGDI GARAAYQLVH+E S
Sbjct: 400 VSKMRASGSTDLAENALARATQVFVKKQPEIHLFAARLKEKNGDIAGARAAYQLVHSEIS 459
Query: 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516
PGLLEA+IKHANME RLGNL+DAFSLYEQ IA+EKGKEHS LP+LYAQYSRF +LVSR+
Sbjct: 460 PGLLEAVIKHANMEHRLGNLDDAFSLYEQVIAVEKGKEHSTILPLLYAQYSRFSYLVSRD 519
Query: 517 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576
EKAR+I+V++LDHVQ SKPL+E+LIHFE+IQ P+QID+LE LV+K + ++D+ + A+
Sbjct: 520 TEKARRIIVEALDHVQPSKPLVESLIHFETIQPPPRQIDYLEPLVEKVIKPDADAQNIAS 579
Query: 577 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKM 636
A+EREELS +++EFLG+FGD + I KAE++H LFLPHRSTS+L+KR A+DFL+S+R KM
Sbjct: 580 ASEREELSLIYIEFLGIFGDVEAIHKAEEQHVTLFLPHRSTSDLKKRSADDFLSSDRTKM 639
Query: 637 AKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPP--ATQAQAQQWN----QQAAYG 690
AK+Y+G P PAQ + AYP++Q W+ GY QPQTWPP A AQ QQWN QQAAYG
Sbjct: 640 AKTYNGTP-PAQPVSNAYPNTQAQWSGGYAAQPQTWPPTQAAPAQPQQWNPAYGQQAAYG 698
Query: 691 AYSAYGSSYPTPQ--TSVPQNAAYGAYPP-AYPAQ 722
AY Y + Y PQ T VPQ AAYGAYP YP Q
Sbjct: 699 AYGGYPAGYTAPQAPTPVPQAAAYGAYPAQTYPTQ 733
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1169 | ||||||
| TAIR|locus:2170453 | 1036 | PRP39-2 [Arabidopsis thaliana | 0.478 | 0.539 | 0.412 | 3.3e-115 | |
| TAIR|locus:2172472 | 450 | AT5G43960 [Arabidopsis thalian | 0.152 | 0.395 | 0.674 | 3.4e-106 | |
| ZFIN|ZDB-GENE-030616-420 | 752 | prpf39 "PRP39 pre-mRNA process | 0.488 | 0.759 | 0.329 | 5.5e-72 | |
| UNIPROTKB|F1PV57 | 667 | PRPF39 "Uncharacterized protei | 0.543 | 0.952 | 0.291 | 1.6e-71 | |
| UNIPROTKB|F1SI15 | 667 | PRPF39 "Uncharacterized protei | 0.543 | 0.952 | 0.290 | 2.1e-71 | |
| RGD|1308702 | 664 | Prpf39 "PRP39 pre-mRNA process | 0.526 | 0.927 | 0.301 | 3.7e-71 | |
| UNIPROTKB|E1C8G8 | 628 | PRPF39 "Uncharacterized protei | 0.464 | 0.864 | 0.320 | 6.4e-71 | |
| UNIPROTKB|Q86UA1 | 669 | PRPF39 "Pre-mRNA-processing fa | 0.486 | 0.850 | 0.306 | 6.9e-70 | |
| MGI|MGI:104602 | 665 | Prpf39 "PRP39 pre-mRNA process | 0.525 | 0.923 | 0.296 | 7.5e-68 | |
| POMBASE|SPBC4B4.09 | 612 | usp105 "U1 snRNP-associated pr | 0.367 | 0.702 | 0.326 | 4.3e-62 |
| TAIR|locus:2170453 PRP39-2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1117 (398.3 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 235/570 (41%), Positives = 339/570 (59%)
Query: 54 STENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA 113
+TE T++ + EL D S + + DRL + + DF WT L+ E E +
Sbjct: 3 TTEVRTAVSDKEPLQRSPEL-DSSTDFL--DNDRLKETFSSGALDFDEWTLLISEIETTS 59
Query: 114 -QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172
D+I K+ VYDAFL EFPLC+GYW+KYA H+ ++ +++ VEV+ERAVQ TYSV +W
Sbjct: 60 FPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVW 119
Query: 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 232
L YC FA+ Y DP + RLFERGL+++G DY LWDKYIEY QQ+WS +A +Y R
Sbjct: 120 LDYCAFAVAAYEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLR 179
Query: 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQ 292
L+ P ++LD Y+ +F++ AAS L E + E + +EE+
Sbjct: 180 TLKYPSKKLDLYYKNFRKIAAS--LKE-KIKCRIDVNGDLSSDPMEEDLVHTRHTDEEIS 236
Query: 293 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352
E S+ +++A L Y+++ E+ Y+ +++ KI FET IRRPYFHVKPL
Sbjct: 237 IVVRELMGPSSSSAVSKA--LHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLD 294
Query: 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 412
+L+NWH YL F E GDF+ + LYERCLI CANY E+W RYV +E+ G +LA+ A
Sbjct: 295 TNQLDNWHAYLSFGETYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFA 354
Query: 413 LARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472
LARA+ FVK IHLF ARFKE GD A A E G +E + K ANME+R
Sbjct: 355 LARASQTFVKSASVIHLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKR 414
Query: 473 LGNLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531
LGN E A + Y +A+ GKE+ +T LY Q+SR ++++ +A+ A QIL++ ++V
Sbjct: 415 LGNFEAAVTTYREALNKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENV 474
Query: 532 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 591
K LLE L+ + +Q+D L+ ++DK L +DS +A ++EE+S +++EF+
Sbjct: 475 PHCKLLLEELMRLLMMHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFI 534
Query: 592 GLFGDAQLIKKAEDRHARLFLPHRSTSELR 621
L G ++KA RH +LF PH + ++LR
Sbjct: 535 DLSGTIHDVRKALGRHIKLF-PHSARAKLR 563
|
|
| TAIR|locus:2172472 AT5G43960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 3.4e-106, Sum P(2) = 3.4e-106
Identities = 122/181 (67%), Positives = 145/181 (80%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
QVGSYFVGQYYQVLQQQPDL+HQFYS+ S IR+DGDSTE+A+S+L IH++V+SLNFTAI
Sbjct: 10 QVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHIHNMVMSLNFTAI 69
Query: 782 EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEE 841
E+KTINS+ SW GGVLV+VSGSVKTKEF RR FVQTFFLAPQEKGYFVL+D+F F+DE
Sbjct: 70 EVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDVFLFVDEG 129
Query: 842 PVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIEDDATDNYS 901
VY H LSE K + Q + + P+ SDYVLEEEA +YV++V I+DD D YS
Sbjct: 130 TVYYHQPSYLSEIKHEAQLNPPTRHPDPQ---VSDYVLEEEASDYVNAVQIKDDLVDKYS 186
Query: 902 L 902
L
Sbjct: 187 L 187
|
|
| ZFIN|ZDB-GENE-030616-420 prpf39 "PRP39 pre-mRNA processing factor 39 homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 5.5e-72, P = 5.5e-72
Identities = 202/613 (32%), Positives = 309/613 (50%)
Query: 46 VNEAGNATSTENGTSLGIESGA------AAGQELVDGSVPAMSGEEDRLWNIVKANSSDF 99
V EAG S E+ +++ +E AA + P + E +RL +V+ N DF
Sbjct: 108 VKEAGQGDS-ESPSNMELEDAPKEPAEPAAEADPAAPQEPELPTEYERLSKVVEDNPEDF 166
Query: 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159
+ W LL+ E+ +++++ R+ +DAF +P CYGYWKKYAD E + G + EVY
Sbjct: 167 NGWVYLLQYVEQ--ENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYR 224
Query: 160 RAVQGVTYSVDIWLHYCIFAINTY----GDPET-IRRLFERGLAYVGTDYLSFPLWDKYI 214
R +Q + SVD+WLHY F G+ E+ IR +E + GTD+ S LW+ YI
Sbjct: 225 RGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYI 284
Query: 215 EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR-PLSEL-RTXXXXXXXXXX 272
+E Q + + V IY R+L P Q ++F FK+ S P L
Sbjct: 285 AWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKFKDHVQSNNPKHFLSEEEFVSLRVELA 344
Query: 273 XXXXPS-ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAVREEMYKKAKEF 330
PS + AE +A EE+ P TE P +TE E + K I R+EM+ +
Sbjct: 345 NANKPSGDEDAETEAPGEELPP-GTEDLPDPAKR-VTEIENMRHKVIETRQEMFNHNEHE 402
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390
SK FE I+RPYFHVK L T+L NW YLDF +G +VV L+ERCLIACA Y
Sbjct: 403 VSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYE 462
Query: 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450
E+WI+Y +E S S + + +A V + + P +HL A F+EQ G ID AR+ +
Sbjct: 463 EFWIKYAKYLE-SYSTEAVRHIYKKACTVHLPKKPNVHLLWAAFEEQQGSIDEARSILKA 521
Query: 451 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRF 509
V PGL ++ ++ERR GN+E+A +L + AI G+ S++ Y+ + +R
Sbjct: 522 VEVSV-PGLAMVRLRRVSLERRHGNMEEAEALLQDAIT--NGRNSSES--SFYSVKLARQ 576
Query: 510 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV--DKFLMS 567
L V ++ +A+++L+++++ + + L L+ E S Q + E + D+ L S
Sbjct: 577 LVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELE--YSGDVQQNEAEIIACFDRALSS 634
Query: 568 NSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRSTSELRKRHAE 626
+ S ++R+ ++FL FG D + A ++H RL S KR AE
Sbjct: 635 SMALESRITFSQRK------VDFLEDFGSDINTLMAAYEQHQRLLAEQESF----KRKAE 684
Query: 627 DFLASERAKMAKS 639
+ AK ++
Sbjct: 685 NGSEEPDAKRQRT 697
|
|
| UNIPROTKB|F1PV57 PRPF39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.6e-71, P = 1.6e-71
Identities = 193/661 (29%), Positives = 312/661 (47%)
Query: 18 SGDNVATSENEAMGSSQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQEL-VDG 76
+ N +T + + Q+A +++ NV + + N + E+ A +L V
Sbjct: 11 NSSNGSTGNSSEVVVEQSADFSTEIMNVTEMEQSPDGSPNVNATTEENEIANAVDLPVTE 70
Query: 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 136
+ E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 TEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYG 128
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 191
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET IR
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRG 188
Query: 192 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEH 248
Query: 252 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311
+ +L T +G + ++ P E + P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIE 305
Query: 312 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 370
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 306 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENG 365
Query: 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 366 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHML 424
Query: 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 425 WAAFEEQQGNINEARNILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNA 483
Query: 491 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 484 KSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGD 539
Query: 550 SPKQIDFLEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAE 604
+ + + DK + + ++R E+ + L + + Q + K +
Sbjct: 540 LKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQ 599
Query: 605 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAA 663
D R E +K H ED +S +M A A + Y + QNPW
Sbjct: 600 DSLKRKAENGSEEPEEKKAHTED-TSSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNY 658
Query: 664 G 664
G
Sbjct: 659 G 659
|
|
| UNIPROTKB|F1SI15 PRPF39 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 2.1e-71, P = 2.1e-71
Identities = 192/661 (29%), Positives = 312/661 (47%)
Query: 18 SGDNVATSENEAMGSSQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQEL-VDG 76
+ +N +T + + Q+A +++ NV + + T+ E+ A +L V
Sbjct: 11 NSNNGSTGNSSEVVIEQSADFSTEIMNVTEMEQSPDGSPTVTTTTEENETANTVDLPVTE 70
Query: 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 136
+ E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 TEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYG 128
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 191
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET I+
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKG 188
Query: 192 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEH 248
Query: 252 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311
+ +L T +G + ++ P E + P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKKLITEIE 306
Query: 312 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 370
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 307 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENG 366
Query: 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 367 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHML 425
Query: 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 426 WAAFEEQQGNINEARNILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAIKNA 484
Query: 491 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 485 KANNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGD 540
Query: 550 SPKQIDFLEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAE 604
+ + + DK + + ++R E+ + L + + Q + K +
Sbjct: 541 LKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQ 600
Query: 605 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAA 663
D R E +K H ED S +M A A + Y + QNPW
Sbjct: 601 DSLKRKAENGSEEPEEKKAHTED--TSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNY 658
Query: 664 G 664
G
Sbjct: 659 G 659
|
|
| RGD|1308702 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 197/653 (30%), Positives = 312/653 (47%)
Query: 20 DNVATSENEAMGSSQAA--GYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGS 77
D S+N + G+S + + ++N S + S+ + + VD
Sbjct: 7 DEYRNSDNGSTGNSSEVVIEHPDFSTEIMNVTEMEQSPDASPSVRVSTEENEMANAVDLP 66
Query: 78 VPAMSG----EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 133
V G E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P
Sbjct: 67 VTETEGNFPPEFEKFWKTVETNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPY 124
Query: 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET--- 188
CYGYWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET
Sbjct: 125 CYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNST 184
Query: 189 IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 248
IR FE + GTD+ S LW+ YI +E Q V +Y RIL P Q +F F
Sbjct: 185 IRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRF 244
Query: 249 KEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 308
KE + +L T G + ++ P E + P +T
Sbjct: 245 KEHVQNNLPRDLLTGEQFIQLRRELASVNGHNGDDGPPGDD--LPSGIEDITDPAKL-IT 301
Query: 309 EAEELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE 367
E E + + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F
Sbjct: 302 EIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEI 361
Query: 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427
+G +VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P
Sbjct: 362 ENGTHERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMA 420
Query: 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487
H+ A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 421 HMLWAAFEEQQGNINEARIILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAI 479
Query: 488 AIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 480 RNAKSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEY 535
Query: 547 IQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAED 605
+ + + DK + + ++R+ +EFL FG D + A D
Sbjct: 536 SCDLKQNEENILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYD 589
Query: 606 RHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 658
H L L + T KR AE+ SE + K+++ S AQ + G ++Q
Sbjct: 590 EHQTL-LKEQDTL---KRKAEN--GSEEPEEKKAHTEDVSSAQIIDGDLQANQ 636
|
|
| UNIPROTKB|E1C8G8 PRPF39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 6.4e-71, P = 6.4e-71
Identities = 184/574 (32%), Positives = 284/574 (49%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
D+ W +V+ N DF+ W LL+ E+ ++++ R+ +D F +P CYGYWKKYAD E
Sbjct: 42 DKFWKVVEDNPQDFTGWVYLLQYVEQ--ENHLPAARKAFDKFFTHYPYCYGYWKKYADLE 99
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPE---TIRRLFERGLAYV 200
R ++ + EVY R +Q + SVD+W+HY F +T DPE TIR +E +
Sbjct: 100 RRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTLDPDDPEANSTIRGAYEHAVLAA 159
Query: 201 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 260
GTD+ S LW+ YI +E Q V IY RIL P Q +F FK+ + +L
Sbjct: 160 GTDFRSDRLWEMYINWEDEQGNLREVTSIYDRILGIPTQLYSHHFQRFKDHVQNNLPRDL 219
Query: 261 RTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAV 319
T G + A ++ P TE + P +TE E + + I +
Sbjct: 220 LTSEQFIQLRRELASVNGHAGGDASAGDD--LPSGTEDITDPAKL-ITEIENMRHRIIEI 276
Query: 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379
+EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV L+
Sbjct: 277 HQEMFNHNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLF 336
Query: 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439
ERC+I+CA Y ++WI+Y ME + S++ + +RA + + + P +H+ A F+EQ G
Sbjct: 337 ERCVISCALYEDFWIKYAKYME-NHSIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQG 395
Query: 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499
+ID AR + E GL ++ ++ERR GN+E+A L E+A+ K S
Sbjct: 396 NIDEARRILKTFE-ECILGLAMVRLRRVSLERRHGNMEEAERLLEEAVRNAKSVSESS-- 452
Query: 500 PMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 558
YA + +R L V +N KAR++L D+++ + + L L+ E + + +
Sbjct: 453 --FYAIKLARHLFKVQKNLPKARKVLSDAIEIDKENTKLYLNLLEMEYCGDLTQNEENIL 510
Query: 559 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRST 617
DK + + ++R+ +EFL FG D + A D H L L + T
Sbjct: 511 SCFDKAVNGSLSIKMRVTFSQRK------VEFLEDFGSDVNKLLDAYDEHQAL-LKEQDT 563
Query: 618 SELRKRHAEDFLASERAKMAKSYSGAPSPAQSLM 651
KR AE+ SE K + + A + M
Sbjct: 564 L---KRRAEN--GSEEPDEKKMLTDEQTMASAQM 592
|
|
| UNIPROTKB|Q86UA1 PRPF39 "Pre-mRNA-processing factor 39" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 6.9e-70, P = 6.9e-70
Identities = 182/594 (30%), Positives = 285/594 (47%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 80 EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 198
E R ++ EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPR 257
Query: 259 ELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYI 317
+L T +G + ++ P E + P +TE E + + I
Sbjct: 258 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 314
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 377
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 315 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 374
Query: 378 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ
Sbjct: 375 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQ 433
Query: 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497
G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K S
Sbjct: 434 QGNINEARNILKTFE-ECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 498 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 493 ----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEEN 548
Query: 557 LEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611
+ DK + + ++R E+ + L + + Q + K +D R
Sbjct: 549 ILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKA 608
Query: 612 LPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAAG 664
E +K H ED +S +M A + Y + QNPW G
Sbjct: 609 ENGSEEPEEKKAHTEDTTSSS-TQMIDGDLQANQAVYNYSAWYQYNYQNPWNYG 661
|
|
| MGI|MGI:104602 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 7.5e-68, P = 7.5e-68
Identities = 194/654 (29%), Positives = 317/654 (48%)
Query: 18 SGDNVATSENEAMGSSQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVD 75
+ DN +T + + + +++ MN + ++ +A+ + + ++ E A + +
Sbjct: 11 NSDNGSTGNSSEVAVVEHPDFSTEIMNVTEMEQSPDASPSAHASTEENEMANAVNLPVTE 70
Query: 76 --GSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 133
G P E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P
Sbjct: 71 AEGDFPP---EFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYPY 125
Query: 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET--- 188
CYGYWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GD ET
Sbjct: 126 CYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTT 185
Query: 189 IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 248
IR FE + GTD+ S LW+ YI +E Q V +Y RIL P Q +F F
Sbjct: 186 IRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRF 245
Query: 249 KEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 308
KE + +L T +G + ++ P E S P +T
Sbjct: 246 KEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDIS-PAKL-IT 301
Query: 309 EAEELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFI 366
E E + + I + +EM+ + SK FE I+RPYFHVKPL + +NW YL+F
Sbjct: 302 EIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFE 361
Query: 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426
+G +VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P
Sbjct: 362 IENGTHERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPM 420
Query: 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 486
H+ A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + A
Sbjct: 421 AHMLWAAFEEQQGNINEARIILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDA 479
Query: 487 IAIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545
I K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 480 IKNAKSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEME 535
Query: 546 SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAE 604
+ + + DK + + ++R+ +EFL FG D + A
Sbjct: 536 YSCDLKQNEENILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAY 589
Query: 605 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 658
D H L L + T KR AE+ SE + K+++ S AQ + G ++Q
Sbjct: 590 DEHQTL-LKEQDTL---KRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQ 637
|
|
| POMBASE|SPBC4B4.09 usp105 "U1 snRNP-associated protein Usp105" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 4.3e-62, P = 4.3e-62
Identities = 149/457 (32%), Positives = 232/457 (50%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPLCY 135
E D+ + N DF AW L+ +E L ++ I +R VYD FL ++PL +
Sbjct: 13 EWDKYNRQINKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLF 72
Query: 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195
GYWKKYAD E V + +YER + G+ +SVD+W +YC F + T GD +R LF +
Sbjct: 73 GYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQ 132
Query: 196 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 255
G VG D+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F + + S+
Sbjct: 133 GANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQ 192
Query: 256 PLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315
P+ +L P++ V A +++ + E E E +
Sbjct: 193 PIQQLLPPDVLASIRADVTREPAKV---VSAGSKQITVERGELE--------IEREMRAR 241
Query: 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
+ ++++K + +K FE+ I+RPYFHVK L +L NW YLDF E +GDF ++
Sbjct: 242 IYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRI 301
Query: 376 VKLYERCLIACANYPEYWIRYVLCMEASGS-MDLAHNALARATHVFVK-RLPEIHLFAAR 433
LYERCLI CA Y E+W RY M A ++ RA+ +F P I + A
Sbjct: 302 CHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCIFASISRPGIRVQYAL 361
Query: 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIE 490
F+E G+I A+A YQ + T+ PG LEA++ +ERR +L +A ++ I
Sbjct: 362 FEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNYDLTNAHAVLRSII--N 418
Query: 491 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527
+GK ++ +L + + + + + E AR + + +
Sbjct: 419 EGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQN 455
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.3.3.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1169 | |||
| cd00780 | 119 | cd00780, NTF2, Nuclear transport factor 2 (NTF2) d | 6e-34 | |
| pfam02136 | 116 | pfam02136, NTF2, Nuclear transport factor 2 (NTF2) | 6e-24 | |
| smart00360 | 73 | smart00360, RRM, RNA recognition motif | 5e-12 | |
| cd00590 | 72 | cd00590, RRM_SF, RNA recognition motif (RRM) super | 3e-11 | |
| COG5107 | 660 | COG5107, RNA14, Pre-mRNA 3'-end processing (cleava | 1e-10 | |
| cd12298 | 78 | cd12298, RRM3_Prp24, RNA recognition motif 3 in fu | 6e-10 | |
| cd00531 | 124 | cd00531, NTF2_like, Nuclear transport factor 2 (NT | 2e-09 | |
| pfam14259 | 69 | pfam14259, RRM_6, RNA recognition motif (a | 9e-09 | |
| cd12415 | 82 | cd12415, RRM3_RBM28_like, RNA recognition motif 3 | 3e-08 | |
| pfam00076 | 70 | pfam00076, RRM_1, RNA recognition motif | 5e-08 | |
| cd12260 | 85 | cd12260, RRM2_SREK1, RNA recognition motif 2 in sp | 1e-07 | |
| cd12395 | 73 | cd12395, RRM2_RBM34, RNA recognition motif 2 in RN | 3e-07 | |
| cd12254 | 73 | cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit | 3e-07 | |
| cd12689 | 80 | cd12689, RRM1_hnRNPL_like, RNA recognition motif 1 | 5e-07 | |
| cd12450 | 77 | cd12450, RRM1_NUCLs, RNA recognition motif 1 found | 6e-07 | |
| cd12251 | 72 | cd12251, RRM3_hnRNPR_like, RNA recognition motif 3 | 1e-06 | |
| cd12306 | 73 | cd12306, RRM_II_PABPs, RNA recognition motif in ty | 1e-06 | |
| cd12338 | 72 | cd12338, RRM1_SRSF1_like, RNA recognition motif 1 | 2e-05 | |
| cd12279 | 74 | cd12279, RRM_TUT1, RNA recognition motif in speckl | 2e-05 | |
| cd12412 | 80 | cd12412, RRM_DAZL_BOULE, RNA recognition motif in | 2e-05 | |
| TIGR01649 | 481 | TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl | 2e-05 | |
| cd12391 | 72 | cd12391, RRM1_SART3, RNA recognition motif 1 in sq | 3e-05 | |
| COG0724 | 306 | COG0724, COG0724, RNA-binding proteins (RRM domain | 3e-05 | |
| cd12421 | 74 | cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition m | 5e-05 | |
| cd12453 | 86 | cd12453, RRM1_RIM4_like, RNA recognition motif 1 i | 6e-05 | |
| cd12417 | 74 | cd12417, RRM_SAFB_like, RNA recognition motif in t | 6e-05 | |
| cd12373 | 73 | cd12373, RRM_SRSF3_like, RNA recognition motif in | 7e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-04 | |
| cd12229 | 81 | cd12229, RRM_G3BP, RNA recognition motif (RRM) in | 1e-04 | |
| cd12384 | 76 | cd12384, RRM_RBM24_RBM38_like, RNA recognition mot | 2e-04 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 2e-04 | |
| cd12312 | 84 | cd12312, RRM_SRSF10_SRSF12, RNA recognition motif | 2e-04 | |
| cd12598 | 72 | cd12598, RRM1_SRSF9, RNA recognition motif 1 in ve | 3e-04 | |
| cd12352 | 72 | cd12352, RRM1_TIA1_like, RNA recognition motif 1 i | 3e-04 | |
| cd12597 | 73 | cd12597, RRM1_SRSF1, RNA recognition motif 1 in se | 4e-04 | |
| cd12356 | 79 | cd12356, RRM_PPARGC1B, RNA recognition motif in pe | 4e-04 | |
| cd12320 | 76 | cd12320, RRM6_RBM19_RRM5_MRD1, RNA recognition mot | 4e-04 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 5e-04 | |
| pfam05843 | 271 | pfam05843, Suf, Suppressor of forked protein (Suf) | 5e-04 | |
| cd12231 | 77 | cd12231, RRM2_U2AF65, RNA recognition motif 2 foun | 5e-04 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 7e-04 | |
| cd12242 | 73 | cd12242, RRM_SLIRP, RNA recognition motif found in | 9e-04 | |
| cd12752 | 87 | cd12752, RRM1_RBM5, RNA recognition motif 1 in ver | 0.001 | |
| cd12494 | 72 | cd12494, RRM3_hnRNPR, RNA recognition motif 3 in v | 0.001 | |
| cd12399 | 78 | cd12399, RRM_HP0827_like, RNA recognition motif in | 0.001 | |
| cd12237 | 93 | cd12237, RRM_snRNP35, RNA recognition motif found | 0.001 | |
| cd12350 | 74 | cd12350, RRM3_SHARP, RNA recognition motif 3 in SM | 0.001 | |
| cd12348 | 75 | cd12348, RRM1_SHARP, RNA recognition motif 1 in SM | 0.001 | |
| cd12379 | 77 | cd12379, RRM2_I_PABPs, RNA recognition motif 2 fou | 0.001 | |
| cd12241 | 77 | cd12241, RRM_SF3B14, RNA recognition motif found i | 0.001 | |
| cd12291 | 72 | cd12291, RRM1_La, RNA recognition motif 1 in La au | 0.001 | |
| cd12413 | 79 | cd12413, RRM1_RBM28_like, RNA recognition motif 1 | 0.002 | |
| cd12614 | 74 | cd12614, RRM1_PUB1, RNA recognition motif 1 in yea | 0.002 | |
| cd12523 | 78 | cd12523, RRM2_MRN1, RNA recognition motif 2 of RNA | 0.002 | |
| cd12495 | 72 | cd12495, RRM3_hnRNPQ, RNA recognition motif 3 in v | 0.002 | |
| cd12599 | 72 | cd12599, RRM1_SF2_plant_like, RNA recognition moti | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 | |
| cd12343 | 66 | cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 | 0.003 | |
| cd12355 | 80 | cd12355, RRM_RBM18, RNA recognition motif in eukar | 0.004 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.004 |
| >gnl|CDD|238403 cd00780, NTF2, Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 6e-34
Identities = 50/122 (40%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF- 778
V FV QYY + + +H+ Y D S + R + I + SL F
Sbjct: 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQ---VTGRDAIVEKLSSLPFQ 58
Query: 779 -TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837
T +I T++S + +GGV+VMV+GS+K E RKF QTF LAPQ GYFVLNDIF F
Sbjct: 59 KTKHKITTVDSQPTPSGGVIVMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRF 117
Query: 838 LD 839
+D
Sbjct: 118 VD 119
|
This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. Length = 119 |
| >gnl|CDD|216894 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 6e-24
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 723 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
V FV +YY L P+ + Y D +S+ G S + I+ SL FT I
Sbjct: 1 VALAFVQRYYAALDAGDPEGLAALYYDDASVEDPPGQSP--VTGREAINEFFDSLPFTRI 58
Query: 782 EIKTINSLGSW----NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837
+ I S+ + + GVLVMV+G + +F RR+F QTF L PQ GYFVLNDIF +
Sbjct: 59 Q-HLITSVDAQPASHSDGVLVMVTGELTVDDF-PRRRFSQTFLLTPQRGGYFVLNDIFRY 116
|
This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. Length = 116 |
| >gnl|CDD|214636 smart00360, RRM, RNA recognition motif | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-12
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++V NLP T E+ E F FG+++ VR+++ +AFVEFE + A++
Sbjct: 1 TLFVGNLPPDTTEEELRELFSKFGKVE-SVRLVRDKETGKSKGFAFVEFESEEDAEKALE 59
Query: 1095 A-SPIQLAGRQVYI 1107
A + +L GR + +
Sbjct: 60 ALNGKELDGRPLKV 73
|
Length = 73 |
| >gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V NLP T ++ E F FG I+ V + KD +AFVEFE + A++A
Sbjct: 1 LFVGNLPPDTTEEDLRELFSKFGEIE--SVRIVRDKDGKSKGFAFVEFESPEDAEKALEA 58
Query: 1096 SP-IQLAGRQVYIE 1108
+L GR++ +
Sbjct: 59 LNGKELDGRKLKVS 72
|
RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72 |
| >gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-10
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK 140
+ G+E RL +K N ++ ++ L++ E Q+++ R +Y+ + FP+ W+
Sbjct: 24 IHGDELRLRERIKDNPTNILSYFQLIQYLE--TQESMDAEREMYEQLSSPFPIMEHAWRL 81
Query: 141 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC--IFAINTYGDPE---TIRRLFER 195
Y E V ++ R ++ ++D+W+ Y I +N + I +E
Sbjct: 82 YMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEF 140
Query: 196 GLAYVGTDYLSFPLWDKYIEY-EYM--------QQEWSRVAMIYTRILENPIQQLDRYFS 246
L + S WD+Y + EY+ QQ ++ Y R L+ P+ L++ +
Sbjct: 141 VLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWK 200
Query: 247 SFKEF 251
++ F
Sbjct: 201 DYENF 205
|
Length = 660 |
| >gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-10
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+YVRNL + ++ F FG ++ P ++ + +AFV F+D S +N
Sbjct: 3 IYVRNLDFKLDEDDLRGIFSKFGEVESIRIP--KKQDEKQGRLNNGFAFVTFKDASSAEN 60
Query: 1092 AIQASPIQLAGRQVYIE 1108
A+Q + +L GR++ +
Sbjct: 61 ALQLNGTELGGRKISVS 77
|
This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78 |
| >gnl|CDD|238296 cd00531, NTF2_like, Nuclear transport factor 2 (NTF2-like) superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 9/120 (7%)
Query: 727 FVGQYYQVLQQQ-PDLVHQFYSDASSMIRVDGDSTESASS-MLDIHSLVISLNFTAIEIK 784
F+ +Y ++L + + Y+D + GD I V L F +
Sbjct: 4 FLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTR 63
Query: 785 TINSL-----GSWNGGVLVMVSGSVKTKEFCR--RRKFVQTFFLAPQEKGYFVLNDIFHF 837
+ S G GV+V V G ++T+ QTF L PQ G + N F
Sbjct: 64 HLVSNVDVQPGDDGEGVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123
|
This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea and eukaryotes. Length = 124 |
| >gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-09
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YVRNLP +VT ++ E F +G+++ GV + KD +AFVEF + A++
Sbjct: 1 LYVRNLPPSVTEEDLREFFSPYGKVE--GVRLVRNKD-RPRGFAFVEFASPEDAEAALKK 57
Query: 1096 SP-IQLAGRQVY 1106
+ L GR +
Sbjct: 58 LNGLVLDGRTLR 69
|
k.a. RRM, RBD, or RNP domain). Length = 69 |
| >gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-08
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-----GVCYAFVEFEDISG 1088
++V++RNLP T E++E F FG +K + R KD + G AFV+F+
Sbjct: 1 RTVFIRNLPFDATEEELKELFSQFGEVK----YARIVKDKLTGHSKGT--AFVKFKTKES 54
Query: 1089 VQNAIQASP------IQLAGRQVYIEE 1109
Q ++A+ + L GR++ +
Sbjct: 55 AQKCLEAADNAEDSGLSLDGRRLIVTL 81
|
This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82 |
| >gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-08
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V NLP T ++++ F FG I+ + + + +AFVEFED + A++A
Sbjct: 1 LFVGNLPPDTTEEDLKDLFSKFGPIE--SIRIVRDETGRSKGFAFVEFEDEEDAEKALEA 58
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70 |
| >gnl|CDD|240706 cd12260, RRM2_SREK1, RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVCYAFVEFEDISGVQNA 1092
+++YV NL T TA ++ E F G +K +VR + YAFVEF + + V NA
Sbjct: 5 RTIYVGNLDPTTTADQLLEFFSQAGEVK----YVRMAGDETQPTRYAFVEFAEQTSVINA 60
Query: 1093 IQASPIQLAGRQVYIE 1108
++ + GR + +
Sbjct: 61 LKLNGAMFGGRPLKVN 76
|
This subfamily corresponds to the RRM2 of SREK1, also termed serine/arginine-rich-splicing regulatory protein 86-kDa (SRrp86), or splicing factor arginine/serine-rich 12 (SFRS12), or splicing regulatory protein 508 amino acid (SRrp508). SREK1 belongs to a family of proteins containing regions rich in serine-arginine dipeptides (SR proteins family), which is involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. It is a unique SR family member and it may play a crucial role in determining tissue specific patterns of alternative splicing. SREK1 can alter splice site selection by both positively and negatively modulating the activity of other SR proteins. For instance, SREK1 can activate SRp20 and repress SC35 in a dose-dependent manner both in vitro and in vivo. In addition, SREK1 contains two (some contain only one) RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and two serine-arginine (SR)-rich domains (SR domains) separated by an unusual glutamic acid-lysine (EK) rich region. The RRM and SR domains are highly conserved among other members of the SR superfamily. However, the EK domain is unique to SREK1. It plays a modulatory role controlling SR domain function by involvement in the inhibition of both constitutive and alternative splicing and in the selection of splice-site. . Length = 85 |
| >gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 1035 SVYVRNLPSTVTAFEIEEE--FQNFGRIKP-DGV-FVRNRKDVVGVCYAFVEFEDISGVQ 1090
SV+V NLP F+IEEE ++F + V VR+RK +G + +V F+ V
Sbjct: 1 SVFVGNLP-----FDIEEEELRKHFEDCGDVEAVRIVRDRKTGIGKGFGYVLFKTKDSVA 55
Query: 1091 NAIQASPIQLAGRQVYIE 1108
A++ + I+L GR++ ++
Sbjct: 56 LALKLNGIKLKGRKIRVK 73
|
This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73 |
| >gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V +R LP + T +I + F I PDG+ + D A+VEF + A++
Sbjct: 2 VRLRGLPFSATEEDIRDFFSGLD-IPPDGIHIVYDDDGRPTGEAYVEFASPEDARRALRK 60
Query: 1096 SPIQLAGRQVYI 1107
++ GR + +
Sbjct: 61 HNNKMGGRYIEV 72
|
The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73 |
| >gnl|CDD|241133 cd12689, RRM1_hnRNPL_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI-- 1093
V+VR LP VT ++ E FG I + ++ A VEFEDIS + +
Sbjct: 5 VHVRGLPDGVTEADLVEALSEFGPIS-YVTMMPKKRQ------ALVEFEDISDAKACVNH 57
Query: 1094 -QASPIQLAGRQVYI 1107
Q +P+ +AGRQ Y
Sbjct: 58 AQQNPVYIAGRQAYF 72
|
This subfamily corresponds to the RRM1 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 80 |
| >gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNA 1092
+++V NL + ++EE F+ G + V VR +D G + VEF G Q A
Sbjct: 1 TLFVGNLSWSAEQDDLEEFFKECGEV----VDVRIAQDDDGRSKGFGHVEFATEEGAQKA 56
Query: 1093 IQASPIQLAGRQVYIE 1108
++ S +L GR++ ++
Sbjct: 57 LEKSGEELLGREIRVD 72
|
This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77 |
| >gnl|CDD|240697 cd12251, RRM3_hnRNPR_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-06
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
VK +YVRNLP + T ++ E F +G ++ V+ KD YAFV FE+ A
Sbjct: 1 VKVLYVRNLPLSTTEEQLRELFSEYGEVER----VKKIKD-----YAFVHFEERDDAVKA 51
Query: 1093 IQA 1095
++
Sbjct: 52 MEE 54
|
This subfamily corresponds to the RRM3 in hnRNP R, hnRNP Q, and APOBEC-1 complementation factor (ACF). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches and has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone and play a key role in cell growth and differentiation. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members contain three conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Length = 72 |
| >gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
S++V N+ T E++E F++ G I F K +A++EF D S V+
Sbjct: 1 SIFVGNVDYGTTPEELQEHFKSCGTINRITILCDKFTGQPKG-----FAYIEFLDKSSVE 55
Query: 1091 NAIQASPIQLAGRQV 1105
NA+ + + GRQ+
Sbjct: 56 NALLLNESEFRGRQI 70
|
This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73 |
| >gnl|CDD|240784 cd12338, RRM1_SRSF1_like, RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NLP + +IE+ F +G IK + R R G +AFVEFED ++A++
Sbjct: 2 IYVGNLPGDIRERDIEDLFYKYGPIKAIDLKNRRR----GPPFAFVEFEDPRDAEDAVRG 57
|
This subgroup corresponds to the RRM1 in three serine/arginine (SR) proteins: serine/arginine-rich splicing factor 1 (SRSF1 or ASF-1), serine/arginine-rich splicing factor 9 (SRSF9 or SRp30C), and plant pre-mRNA-splicing factor SF2 (SR1). SRSF1 is a shuttling SR protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF9 has been implicated in the activity of many elements that control splice site selection, the alternative splicing of the glucocorticoid receptor beta in neutrophils and in the gonadotropin-releasing hormone pre-mRNA. It can also interact with other proteins implicated in alternative splicing, including YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. Both, SRSF1 and SRSF9, contain two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RS domains rich in serine-arginine dipeptides. In contrast, SF2 contains two N-terminal RRMs and a C-terminal PSK domain rich in proline, serine and lysine residues. . Length = 72 |
| >gnl|CDD|240725 cd12279, RRM_TUT1, RNA recognition motif in speckle targeted PIP5K1A-regulated poly(A) polymerase (Star-PAP) and similar proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+SV+V + ++ + F FG + V + K V YA VEF+ GV
Sbjct: 1 AERSVFVSGFKRGTSEEQLMDYFSAFGPVM--NVIMDKDKGV----YAIVEFDSKEGVDK 54
Query: 1092 AIQASPIQLAGRQVYIEER 1110
+ L G ++ + R
Sbjct: 55 VLSEPQHTLNGHRLRVRPR 73
|
This subfamily corresponds to the RRM of Star-PAP, also termed RNA-binding motif protein 21 (RBM21), which is a ubiquitously expressed U6 snRNA-specific terminal uridylyltransferase (U6-TUTase) essential for cell proliferation. Although it belongs to the well-characterized poly(A) polymerase protein superfamily, Star-PAP is highly divergent from both, the poly(A) polymerase (PAP) and the terminal uridylyl transferase (TUTase), identified within the editing complexes of trypanosomes. Star-PAP predominantly localizes at nuclear speckles and catalyzes RNA-modifying nucleotidyl transferase reactions. It functions in mRNA biosynthesis and may be regulated by phosphoinositides. It binds to glutathione S-transferase (GST)-PIPKIalpha. Star-PAP preferentially uses ATP as a nucleotide substrate and possesses PAP activity that is stimulated by PtdIns4,5P2. It contains an N-terminal C2H2-type zinc finger motif followed by an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a split PAP domain linked by a proline-rich region, a PAP catalytic and core domain, a PAP-associated domain, an RS repeat, and a nuclear localization signal (NLS). . Length = 74 |
| >gnl|CDD|240858 cd12412, RRM_DAZL_BOULE, RNA recognition motif in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
++V +P T E+ + F FG +K V+ D GV Y FV FE + +
Sbjct: 5 IFVGGIPPDTTEEELRDFFSRFGSVKD----VKIITDRAGVSKGYGFVTFETQEDAEKIL 60
Query: 1094 QASPIQLAGRQVYI 1107
+ G+++ I
Sbjct: 61 AMGNLNFRGKKLNI 74
|
This subfamily corresponds to the RRM domain of two Deleted in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE. BOULE is the founder member of the family and DAZL arose from BOULE in an ancestor of vertebrates. The DAZ gene subsequently originated from a duplication transposition of the DAZL gene. Invertebrates contain a single DAZ homolog, BOULE, while vertebrates, other than catarrhine primates, possess both BOULE and DAZL genes. The catarrhine primates possess BOULE, DAZL, and DAZ genes. The family members encode closely related RNA-binding proteins that are required for fertility in numerous organisms. These proteins contain an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a varying number of copies of a DAZ motif, believed to mediate protein-protein interactions. DAZL and BOULE contain a single copy of the DAZ motif, while DAZ proteins can contain 8-24 copies of this repeat. Although their specific biochemical functions remain to be investigated, DAZL proteins may interact with poly(A)-binding proteins (PABPs), and act as translational activators of specific mRNAs during gametogenesis. . Length = 80 |
| >gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
V+VRNLP V ++ E FG + + R+ A VEFED + +
Sbjct: 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQ-------ALVEFEDEESAKACV 55
Query: 1094 Q---ASPIQLAGRQVYIE-------ERRPNTGSTSRGG 1121
+ PI + G+ + +R N+ S G
Sbjct: 56 NFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGP 93
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481 |
| >gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNA 1092
+V+V NL +V E+ + F G I VR K+ G YA+VEFE+ VQ A
Sbjct: 1 TVFVSNLDYSVPEDELRKLFSKCGEI----TDVRLVKNYKGKSKGYAYVEFENEESVQEA 56
Query: 1093 IQASPIQLAGRQVYI 1107
++ + GR +++
Sbjct: 57 LKLDRELIKGRPMFV 71
|
This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72 |
| >gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (110), Expect = 3e-05
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 997 QSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQN 1056
+ YT F E SS P+S ++ +++ +++V NLP VT ++ E F+
Sbjct: 87 ERGYTKEFEEELFRSSESPKSRQKSKEEN--------NTLFVGNLPYDVTEEDLRELFKK 138
Query: 1057 FG-----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110
FG R+ D ++R +AFVEFE + AI+ + +L GR + +++
Sbjct: 139 FGPVKRVRLVRDRETGKSRG------FAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192
Query: 1111 RPN 1113
+P
Sbjct: 193 QPA 195
|
Length = 306 |
| >gnl|CDD|240867 cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-05
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ- 1094
+++RNLP VT ++ FG++ V + K A VE + + ++ +
Sbjct: 2 LHLRNLPPDVTESDLIALVSPFGKVT--NVLLLRGK-----NQALVEMDSVESAKSMVDY 54
Query: 1095 --ASPIQLAGRQVYIE 1108
P + GR+VYI+
Sbjct: 55 YLTVPALIRGRRVYIQ 70
|
This subfamily corresponds to the RRM1 of the majority of family members that include polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. The family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. In addition, this family also includes RNA-binding motif protein 20 (RBM20) that is an alternative splicing regulator associated with dilated cardiomyopathy (DCM) and contains only one RRM. . Length = 74 |
| >gnl|CDD|240899 cd12453, RRM1_RIM4_like, RNA recognition motif 1 in yeast meiotic activator RIM4 and similar proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1036 VYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
V+V +LP++ + E+E E F +G + VFV+ +D YAFV+F + +N
Sbjct: 5 VFVASLPASKSDDELEAAVTEHFSKYGTL----VFVKVLRDWRQRPYAFVQFTNDDDAKN 60
Query: 1092 AI-QASPIQLAGRQVYIEERRPN 1113
A+ + L GR + E + N
Sbjct: 61 ALAKGQGTILDGRHIRCERAKVN 83
|
This subfamily corresponds to the RRM1 of RIM4, also termed regulator of IME2 protein 4, a putative RNA binding protein that is expressed at elevated levels early in meiosis. It functions as a meiotic activator required for both the IME1- and IME2-dependent pathways of meiotic gene expression, as well as early events of meiosis, such as meiotic division and recombination, in Saccharomyces cerevisiae. RIM4 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes a putative RNA-binding protein termed multicopy suppressor of sporulation protein Msa1. It is a putative RNA-binding protein encoded by a novel gene, msa1, from the fission yeast Schizosaccharomyces pombe. Msa1 may be involved in the inhibition of sexual differentiation by controlling the expression of Ste11-regulated genes, possibly through the pheromone-signaling pathway. Like RIM4, Msa1 also contains two RRMs, both of which are essential for the function of Msa1. . Length = 86 |
| >gnl|CDD|240863 cd12417, RRM_SAFB_like, RNA recognition motif in the scaffold attachment factor (SAFB) family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++V L ST A ++++ F +G++ + N + C+ FV + IQ
Sbjct: 1 NLWVSGLSSTTKAADLKQLFSKYGKVVGAKIVT-NARSPGARCFGFVTMASVEEAAKCIQ 59
Query: 1095 A-SPIQLAGRQVYIE 1108
+L GR + +E
Sbjct: 60 HLHRTELHGRVISVE 74
|
This subfamily corresponds to the RRM domain of the SAFB family, including scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), SAFB-like transcriptional modulator (SLTM), and similar proteins, which are ubiquitously expressed. SAFB1, SAFB2 and SLTM have been implicated in many diverse cellular processes including cell growth and transformation, stress response, and apoptosis. They share high sequence similarities and all contain a scaffold attachment factor-box (SAF-box, also known as SAP domain) DNA-binding motif, an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region rich in glutamine and arginine residues. SAFB1 is a nuclear protein with a distribution similar to that of SLTM, but unlike that of SAFB2, which is also found in the cytoplasm. To a large extent, SAFB1 and SLTM might share similar functions, such as the inhibition of an oestrogen reporter gene. The additional cytoplasmic localization of SAFB2 implies that it could play additional roles in the cytoplasmic compartment which are distinct from the nuclear functions shared with SAFB1 and SLTM. . Length = 74 |
| >gnl|CDD|240819 cd12373, RRM_SRSF3_like, RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
VYV NL T E+E+EF+ +G ++ V+V RN +AFVEFED ++A++
Sbjct: 2 VYVGNLGPRATKRELEDEFEKYGPLR--SVWVARNPPG-----FAFVEFEDPRDAEDAVR 54
Query: 1095 A 1095
A
Sbjct: 55 A 55
|
This subfamily corresponds to the RRM of two serine/arginine (SR) proteins, serine/arginine-rich splicing factor 3 (SRSF3) and serine/arginine-rich splicing factor 7 (SRSF7). SRSF3, also termed pre-mRNA-splicing factor SRp20, modulates alternative splicing by interacting with RNA cis-elements in a concentration- and cell differentiation-dependent manner. It is also involved in termination of transcription, alternative RNA polyadenylation, RNA export, and protein translation. SRSF3 is critical for cell proliferation, and tumor induction and maintenance. It can shuttle between the nucleus and cytoplasm. SRSF7, also termed splicing factor 9G8, plays a crucial role in both constitutive splicing and alternative splicing of many pre-mRNAs. Its localization and functions are tightly regulated by phosphorylation. SRSF7 is predominantly present in the nuclear and can shuttle between nucleus and cytoplasm. It cooperates with the export protein, Tap/NXF1, helps mRNA export to the cytoplasm, and enhances the expression of unspliced mRNA. Moreover, SRSF7 inhibits tau E10 inclusion through directly interacting with the proximal downstream intron of E10, a clustering region for frontotemporal dementia with Parkinsonism (FTDP) mutations. Both SRSF3 and SRSF7 contain a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RS domain rich in serine-arginine dipeptides. The RRM domain is involved in RNA binding, and the RS domain has been implicated in protein shuttling and protein-protein interactions. . Length = 73 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 77/361 (21%), Positives = 122/361 (33%), Gaps = 69/361 (19%)
Query: 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL--- 424
R G F+K + ++ P+ + L G++ L LA+A F K L
Sbjct: 443 RSGQFDKALAAAKKLE---KKQPDNASLHNL----LGAIYLGKGDLAKAREAFEKALSIE 495
Query: 425 PEIHLFA----ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 480
P+ A AR Q G+ D A ++ V T P L AI+ A + R GN E+A
Sbjct: 496 PD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAV 553
Query: 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 540
+ E+A + + AQY +L +KA IL ++ D S
Sbjct: 554 AWLEKAAELNPQ---EIEPALALAQY----YLGKGQLKKALAILNEAADAAPDSPEAWLM 606
Query: 541 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI 600
L Q + ++ K L DS L L DA +
Sbjct: 607 LG---RAQLAAGDLNKAVSSFKKLLALQPDSA----------------LALLLLADAYAV 647
Query: 601 KKAEDRHARLFLPHRSTSELRK--RHAEDFLASERAKM-----AKSYSGAPSPAQSLMGA 653
K + L++ D ++ AK A A+SL
Sbjct: 648 MKNYAKAIT---------SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698
Query: 654 YPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQTSVPQNAAYG 713
+P + A G+ ++ +Q + AA AY P+ Q ++ + A
Sbjct: 699 HPKA----ALGFELEGDL-------YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL 747
Query: 714 A 714
A
Sbjct: 748 A 748
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|240675 cd12229, RRM_G3BP, RNA recognition motif (RRM) in ras GTPase-activating protein-binding protein G3BP1, G3BP2 and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFG-----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
++V NLP +T E++E F+ FG RI G R + FV F+D VQ
Sbjct: 6 LFVGNLPHDITEDELKEFFKEFGNVLEVRINSKGGGGRLPN------FGFVVFDDPEAVQ 59
Query: 1091 NAIQASPIQLAGRQ-VYIEERR 1111
+ PI G + +EE++
Sbjct: 60 KILANKPIYFRGDHRLNVEEKK 81
|
This subfamily corresponds to the RRM domain in the G3BP family of RNA-binding and SH3 domain-binding proteins. G3BP acts at the level of RNA metabolism in response to cell signaling, possibly as RNA transcript stabilizing factors or an RNase. Members include G3BP1, G3BP2 and similar proteins. These proteins associate directly with the SH3 domain of GTPase-activating protein (GAP), which functions as an inhibitor of Ras. They all contain an N-terminal nuclear transfer factor 2 (NTF2)-like domain, an acidic domain, a domain containing PXXP motif(s), an RNA recognition motif (RRM), and an Arg-Gly-rich region (RGG-rich region, or arginine methylation motif). Length = 81 |
| >gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V LP T + + F FG I+ + V + +R+ Y FV F+D + A +
Sbjct: 3 IFVGGLPYHTTDDSLRKYFSQFGEIE-EAVVITDRQTGKSRGYGFVTFKDKESAERACKD 61
Query: 1096 SPIQLAGRQ 1104
+ GR+
Sbjct: 62 PNPIIDGRK 70
|
This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 370 GDFNKVVKLYERCLIACANYPEYWIRYV 397
GD + K+YER L E W++Y
Sbjct: 1 GDIERARKIYERALEKFPKSVELWLKYA 28
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|240758 cd12312, RRM_SRSF10_SRSF12, RNA recognition motif in serine/arginine-rich splicing factor SRSF10, SRSF12 and similar proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
S+YVRN+ ++ F +G I P + R + +A+V+FED+
Sbjct: 1 TSLYVRNVADATRPDDLRRLFGKYGPIVDVYIPLDFYTRRPR-----GFAYVQFEDVRDA 55
Query: 1090 QNAI-QASPIQLAGRQVYIE 1108
++A+ + GR++ I+
Sbjct: 56 EDALYYLDRTRFLGREIEIQ 75
|
This subfamily corresponds to the RRM of SRSF10 and SRSF12. SRSF10, also termed 40 kDa SR-repressor protein (SRrp40), or FUS-interacting serine-arginine-rich protein 1 (FUSIP1), or splicing factor SRp38, or splicing factor, arginine/serine-rich 13A (SFRS13A), or TLS-associated protein with Ser-Arg repeats (TASR). It is a serine-arginine (SR) protein that acts as a potent and general splicing repressor when dephosphorylated. It mediates global inhibition of splicing both in M phase of the cell cycle and in response to heat shock. SRSF10 emerges as a modulator of cholesterol homeostasis through the regulation of low-density lipoprotein receptor (LDLR) splicing efficiency. It also regulates cardiac-specific alternative splicing of triadin pre-mRNA and is required for proper Ca2+ handling during embryonic heart development. In contrast, the phosphorylated SRSF10 functions as a sequence-specific splicing activator in the presence of a nuclear cofactor. It activates distal alternative 5' splice site of adenovirus E1A pre-mRNA in vivo. Moreover, SRSF10 strengthens pre-mRNA recognition by U1 and U2 snRNPs. SRSF10 localizes to the nuclear speckles and can shuttle between nucleus and cytoplasm. SRSF12, also termed 35 kDa SR repressor protein (SRrp35), or splicing factor, arginine/serine-rich 13B (SFRS13B), or splicing factor, arginine/serine-rich 19 (SFRS19), is a serine/arginine (SR) protein-like alternative splicing regulator that antagonizes authentic SR proteins in the modulation of alternative 5' splice site choice. For instance, it activates distal alternative 5' splice site of the adenovirus E1A pre-mRNA in vivo. Both, SRSF10 and SRSF12, contain a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a C-terminal RS domain rich in serine-arginine dipeptides. . Length = 84 |
| >gnl|CDD|241042 cd12598, RRM1_SRSF9, RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 9 (SRSF9) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+YV NLPS V ++E+ F +GRI+ + ++NR+ +V +AFV FED ++A+
Sbjct: 2 IYVGNLPSDVREKDLEDLFYKYGRIRD--IELKNRRGLVP--FAFVRFEDPRDAEDAV 55
|
This subgroup corresponds to the RRM1 of SRSF9, also termed pre-mRNA-splicing factor SRp30C. SRSF9 is an essential splicing regulatory serine/arginine (SR) protein that has been implicated in the activity of many elements that control splice site selection, the alternative splicing of the glucocorticoid receptor beta in neutrophils and in the gonadotropin-releasing hormone pre-mRNA. SRSF9 can also interact with other proteins implicated in alternative splicing, including YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. SRSF9 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by an unusually short C-terminal RS domains rich in serine-arginine dipeptides. . Length = 72 |
| >gnl|CDD|240798 cd12352, RRM1_TIA1_like, RNA recognition motif 1 in granule-associated RNA binding proteins p40-TIA-1 and TIAR | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NL TVT + E F G IK + + D YAFVE+ D A+Q
Sbjct: 1 LYVGNLDRTVTEDLLAELFSQIGPIKSCKLIREHGND----PYAFVEYYDHRSAAAALQT 56
Query: 1096 SPIQLAGRQVYIEERRPN 1113
+ GR + +E + N
Sbjct: 57 ----MNGRLILGQEIKVN 70
|
This subfamily corresponds to the RRM1 of nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR), both of which are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. TIA-1 and TIAR share high sequence similarity. They are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both, TIA-1 and TIAR, bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. Length = 72 |
| >gnl|CDD|241041 cd12597, RRM1_SRSF1, RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NLP + +IE+ F +G I+ + ++NR+ G +AFVEFED ++A+
Sbjct: 2 IYVGNLPPDIRTKDIEDLFYKYGAIR--DIDLKNRR---GPPFAFVEFEDPRDAEDAVYG 56
|
This subgroup corresponds to the RRM1 of SRSF1, also termed alternative-splicing factor 1 (ASF-1), or pre-mRNA-splicing factor SF2, P33 subunit. SRSF1 is a splicing regulatory serine/arginine (SR) protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF1 is a shuttling SR protein and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), separated by a long glycine-rich spacer, and a C-terminal RS domains rich in serine-arginine dipeptides. . Length = 73 |
| >gnl|CDD|240802 cd12356, RRM_PPARGC1B, RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator 1-beta (PGC-1-beta) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV 1076
EG V +Y+RNL S++++ E+++ F+ FG I+ V +++R + G
Sbjct: 1 EGRV--IYIRNLSSSMSSTELKKRFEVFGEIEECKVLIKSRGEKYGF 45
|
This subfamily corresponds to the RRM of PGC-1beta, also termed PPAR-gamma coactivator 1-beta, or PPARGC-1-beta, or PGC-1-related estrogen receptor alpha coactivator, which is one of the members of PGC-1 transcriptional coactivators family, including PGC-1alpha and PGC-1-related coactivator (PRC). PGC-1beta plays a nonredundant role in controlling mitochondrial oxidative energy metabolism and affects both, insulin sensitivity and mitochondrial biogenesis, and functions in a number of oxidative tissues. It is involved in maintaining baseline mitochondrial function and cardiac contractile function following pressure overload hypertrophy by preserving glucose metabolism and preventing oxidative stress. PGC-1beta induces hypertriglyceridemia in response to dietary fats through activating hepatic lipogenesis and lipoprotein secretion. It can stimulate apolipoprotein C3 (APOC3) expression, further mediating hypolipidemic effect of nicotinic acid. PGC-1beta also drives nuclear respiratory factor 1 (NRF-1) target gene expression and NRF-1 and estrogen related receptor alpha (ERRalpha)-dependent mitochondrial biogenesis. The modulation of the expression of PGC-1beta can trigger ERRalpha-induced adipogenesis. PGC-1beta is also a potent regulator inducing angiogenesis in skeletal muscle. The transcriptional activity of PGC-1beta can be increased through binding to host cell factor (HCF), a cellular protein involved in herpes simplex virus (HSV) infection and cell cycle regulation. PGC-1beta is a multi-domain protein containing an N-terminal activation domain, an LXXLL coactivator signature, a tetrapeptide motif (DHDY) responsible for HCF binding, two glutamic/aspartic acid-rich acidic domains, and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In contrast to PGC-1alpha, PGC-1beta lacks most of the arginine/serine (SR)-rich domain that is responsible for the regulation of RNA processing. . Length = 79 |
| >gnl|CDD|240766 cd12320, RRM6_RBM19_RRM5_MRD1, RNA recognition motif 6 in RNA-binding protein 19 (RBM19 or RBD-1) and RNA recognition motif 5 in multiple RNA-binding domain-containing protein 1 (MRD1) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 1038 VRNLPSTVTAFEIEEEFQNFGRI-------KPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
VRN+P T E+ E F FG++ K DG +R +AFVEF Q
Sbjct: 5 VRNVPFEATKKELRELFSPFGQVKSVRLPKKFDG---SHRG------FAFVEFVTKQEAQ 55
Query: 1091 NAIQA-SPIQLAGRQVYIE 1108
NA++A L GR + +E
Sbjct: 56 NAMEALKSTHLYGRHLVLE 74
|
This subfamily corresponds to the RRM6 of RBM19 and RRM5 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 76 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 5e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 184 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217
GD E R+++ER L S LW KY E+E
Sbjct: 1 GDIERARKIYERALEKFP---KSVELWLKYAEFE 31
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 13/137 (9%)
Query: 185 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE-----NPIQ 239
D R LFE + + + PLW K+I+YE + S + + R+ E PI+
Sbjct: 85 DDTNARVLFETVVTKLTPEPELKPLWKKFIKYESKFGDLSSILKLEKRMFELFPEDPPIE 144
Query: 240 QL-DRYFSSFKEFA--ASRPLSELRTAEEVDAAAVAVAAA---PSETGAEVKANEEEVQP 293
DRY SF +F R L + E A V A + ++++ +
Sbjct: 145 LFSDRY--SFLDFDPIKKRELGSPGSQERPKATLNPVTQATNSKKRPLEDDDSSKKPDKS 202
Query: 294 DATEQTSKPVSAGLTEA 310
+Q + S
Sbjct: 203 RRLDQQRRSPSTNPAPQ 219
|
This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur. Length = 271 |
| >gnl|CDD|240677 cd12231, RRM2_U2AF65, RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
+++ LP+ ++ +++E ++FG++K F + G+ YAF E+ D S AI
Sbjct: 3 IFIGGLPNYLSEDQVKELLESFGKLK---AFNLVKDSATGLSKGYAFCEYLDPSVTDQAI 59
Query: 1094 QA-SPIQLAGR 1103
+ +QL +
Sbjct: 60 AGLNGMQLGDK 70
|
This subfamily corresponds to the RRM2 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 77 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
+I + R++Y+ L +FP W KYA+ E
Sbjct: 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|240688 cd12242, RRM_SLIRP, RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V NLP TV + E++E F FG++K V +++ + Y FV F G++NA+Q
Sbjct: 2 LFVGNLPWTVGSKELKEYFSQFGKVKSCNV-PFDKETGLSKGYGFVSFSSRDGLENALQK 60
Query: 1096 SPIQLAGRQVYI 1107
L G ++ +
Sbjct: 61 QKHILEGNKLQV 72
|
This subfamily corresponds to the RRM of SLIRP, a widely expressed small steroid receptor RNA activator (SRA) binding protein, which binds to STR7, a functional substructure of SRA. SLIRP is localized predominantly to the mitochondria and plays a key role in modulating several nuclear receptor (NR) pathways. It functions as a co-repressor to repress SRA-mediated nuclear receptor coactivation. It modulates SHARP- and SKIP-mediated co-regulation of NR activity. SLIRP contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is required for SLIRP's corepression activities. . Length = 73 |
| >gnl|CDD|241196 cd12752, RRM1_RBM5, RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5) | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.001
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
DE E K++ +R LP +T +I E ++F +P V + RK V +AFVEF +
Sbjct: 1 DEKESKTIMLRGLPINITENDIRELIESFEGPQPADVRLMKRKTGVSRGFAFVEFYHLQD 60
Query: 1089 VQNAIQASPIQLA--GRQVYIEERRP 1112
+ ++A+ +L G+ + + P
Sbjct: 61 ATSWMEANQKKLVIQGKTIAMHYSNP 86
|
This subgroup corresponds to the RRM1 of RBM5, also termed protein G15, or putative tumor suppressor LUCA15, or renal carcinoma antigen NY-REN-9, a known modulator of apoptosis. It may also act as a tumor suppressor or an RNA splicing factor. RBM5 shows high sequence similarity to RNA-binding protein 6 (RBM6 or NY-LU-12 or g16 or DEF-3). Both, RBM5 and RBM6, specifically bind poly(G) RNA. They contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two C2H2-type zinc fingers, a nuclear localization signal, and a G-patch/D111 domain. . Length = 87 |
| >gnl|CDD|240938 cd12494, RRM3_hnRNPR, RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
VK ++VRNL +TVT +E+ F FG+++ V+ KD YAFV FE+ A
Sbjct: 1 VKVLFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD-----YAFVHFEERDAAVRA 51
Query: 1093 I-QASPIQLAGRQVYIEERRP 1112
+ + + ++ G ++ I +P
Sbjct: 52 MDEMNGKEIEGEEIEIVLAKP 72
|
This subgroup corresponds to the RRM3 of hnRNP R. a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches. Upon binding of RNA, hnRNP R forms oligomers, most probably dimers. hnRNP R has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP R is predominantly located in axons of motor neurons and to a much lower degree in sensory axons. In axons of motor neurons, it also functions as a cytosolic protein and interacts with wild type of survival motor neuron (SMN) proteins directly, further providing a molecular link between SMN and the spliceosome. Moreover, hnRNP R plays an important role in neural differentiation and development, as well as in retinal development and light-elicited cellular activities. hnRNP R contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; hnRNP R binds RNA through its RRM domains. . Length = 72 |
| >gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 1037 YVRNLPSTVTAFEIEEEFQNFG-----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
YV NLP VT ++++ F FG R+ D R+R + FVE E
Sbjct: 3 YVGNLPYNVTEEDLKDLFGQFGEVTSARVITDRETGRSRG------FGFVEMETAEEANA 56
Query: 1092 AIQA-SPIQLAGRQVYIEERRP 1112
AI+ + GR + + E RP
Sbjct: 57 AIEKLNGTDFGGRTLTVNEARP 78
|
This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78 |
| >gnl|CDD|240683 cd12237, RRM_snRNP35, RNA recognition motif found in U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12-35K) and similar proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---GVCYAFVEFEDISGVQ 1090
+++V L T + E F +G I+ +R +D+V YAFVE+E
Sbjct: 4 LTLFVGRLSLQTTEETLREVFSRYGDIRR----LRLVRDIVTGFSKGYAFVEYEHERDAL 59
Query: 1091 NAIQ-ASPIQLAGRQVYIE---ERR 1111
A + A + + G +++++ ER
Sbjct: 60 RAYRDAHKLVIDGSEIFVDFERERT 84
|
This subfamily corresponds to the RRM of U11/U12-35K, also termed protein HM-1, or U1 snRNP-binding protein homolog, and is one of the components of the U11/U12 snRNP, which is a subunit of the minor (U12-dependent) spliceosome required for splicing U12-type nuclear pre-mRNA introns. U11/U12-35K is highly conserved among bilateria and plants, but lacks in some organisms, such as Saccharomyces cerevisiae and Caenorhabditis elegans. Moreover, U11/U12-35K shows significant sequence homology to U1 snRNP-specific 70 kDa protein (U1-70K or snRNP70). It contains a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by an adjacent glycine-rich region, and Arg-Asp and Arg-Glu dipeptide repeats rich domain, making U11/U12-35K a possible functional analog of U1-70K. It may facilitate 5' splice site recognition in the minor spliceosome and play a role in exon bridging, interacting with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron. The family corresponds to the RRM of U11/U12-35K that may directly contact the U11 or U12 snRNA through the RRM domain. Length = 93 |
| >gnl|CDD|240796 cd12350, RRM3_SHARP, RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+++++ NL T T ++ E F+ FG I + + +K YAF+++ DI+ V A+
Sbjct: 3 RTLFIGNLEKTTTYSDLREAFERFGEI----IDIDIKKQGGNPAYAFIQYADIASVVKAM 58
Query: 1094 Q 1094
+
Sbjct: 59 R 59
|
This subfamily corresponds to the RRM3 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 74 |
| >gnl|CDD|240794 cd12348, RRM1_SHARP, RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++V NLP V I E F+ +GR++ + + D GV AFV+F DI Q A
Sbjct: 1 HLWVGNLPENVREERISEHFKRYGRVESVKILPKRGSD-GGVA-AFVDFVDIKSAQKAHN 58
Query: 1095 ASPIQLAGRQVYIE 1108
A + R + +
Sbjct: 59 AVNK-MGDRDLRTD 71
|
This subfamily corresponds to the RRM1 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 75 |
| >gnl|CDD|240825 cd12379, RRM2_I_PABPs, RNA recognition motif 2 found in type I polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
++++NL ++ + + F FG I V D G Y FV FE AI
Sbjct: 5 IFIKNLDKSIDNKALYDTFSAFGNILSCKV----ATDENGGSKGYGFVHFETEEAAVRAI 60
Query: 1094 QA-SPIQLAGRQVYI 1107
+ + + L ++V++
Sbjct: 61 EKVNGMLLNDKKVFV 75
|
This subfamily corresponds to the RRM2 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is a ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. Moreover, PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 77 |
| >gnl|CDD|240687 cd12241, RRM_SF3B14, RNA recognition motif found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YVRNLP +++ E+ + F +G I+ + + N K+ G AFV +EDI +NA
Sbjct: 5 LYVRNLPFKISSEELYDLFGKYGAIRQ--IRIGNTKETRGT--AFVVYEDIYDAKNACDH 60
Query: 1096 -SPIQLAGR 1103
S +A R
Sbjct: 61 LSGFNVANR 69
|
This subfamily corresponds to the RRM of SF3B14 (also termed p14), a 14 kDa protein subunit of SF3B which is a multiprotein complex that is an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA and has been involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B14 associates directly with another SF3B subunit called SF3B155. It is also present in both U2- and U12-dependent spliceosomes and may contribute to branch site positioning in both the major and minor spliceosome. Moreover, SF3B14 interacts directly with the pre-mRNA branch adenosine early in spliceosome assembly and within the fully assembled spliceosome. SF3B14 contains one well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 77 |
| >gnl|CDD|240737 cd12291, RRM1_La, RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV----VGVCYAFVEFEDISGVQ 1090
+VYV+ P T +I+E F+ FG++ +R R+D+ G FVEF+ +
Sbjct: 1 TVYVKGFPKDATLDDIQEFFEKFGKV----NNIRMRRDLDKKFKGSV--FVEFKTEEDAK 54
Query: 1091 NAIQASPIQLAGRQVYIE 1108
++ ++ +++ +
Sbjct: 55 KFLEKEKLKYKEKELTVM 72
|
This subfamily corresponds to the RRM1 of La autoantigen, also termed Lupus La protein, or La ribonucleoprotein, or Sjoegren syndrome type B antigen (SS-B), a highly abundant nuclear phosphoprotein and well conserved in eukaryotes. It specifically binds the 3'-terminal UUU-OH motif of nascent RNA polymerase III transcripts and protects them from exonucleolytic degradation by 3' exonucleases. In addition, La can directly facilitate the translation and/or metabolism of many UUU-3' OH-lacking cellular and viral mRNAs, through binding internal RNA sequences within the untranslated regions of target mRNAs. La contains an N-terminal La motif (LAM), followed by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It also possesses a short basic motif (SBM) and a nuclear localization signal (NLS) at the C-terminus. . Length = 72 |
| >gnl|CDD|240859 cd12413, RRM1_RBM28_like, RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++VRNLP T ++EE F G IK V+++ + +V F + A++
Sbjct: 1 TLFVRNLPYDTTDEQLEEFFSEVGPIK-RCFVVKDKGSKKCRGFGYVTFALEEDAKRALE 59
Query: 1095 ASP-IQLAGRQVYIE 1108
+ GR++++E
Sbjct: 60 EKKKTKFGGRKIHVE 74
|
This subfamily corresponds to the RRM1 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 79 |
| >gnl|CDD|241058 cd12614, RRM1_PUB1, RNA recognition motif 1 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NL VT +++ FQ G ++ V + K+ GV Y FVE+ + A+Q
Sbjct: 1 LYVGNLDPRVTEDILKQIFQVGGPVQ--NVKIIPDKNNKGVNYGFVEYHQSHDAEIALQT 58
Query: 1096 SPIQLAGRQVYIEERRPN 1113
L GRQ+ E R N
Sbjct: 59 ----LNGRQIENNEIRVN 72
|
This subgroup corresponds to the RRM1 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 74 |
| >gnl|CDD|240967 cd12523, RRM2_MRN1, RNA recognition motif 2 of RNA-binding protein MRN1 and similar proteins | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
G ++VY+ NLP + + E+ E+ + FG I D + + K++ AFV F I+
Sbjct: 1 GASRNVYIGNLPESYSEEELREDLEKFGPI--DQIKIVKEKNI-----AFVHFLSIANAI 53
Query: 1091 NAIQASPIQ--LAGRQVY 1106
+ P + A R+++
Sbjct: 54 KVVTTLPCEPDYASRRIF 71
|
This subgroup corresponds to the RRM2 of MRN1, also termed multicopy suppressor of RSC-NHP6 synthetic lethality protein 1, or post-transcriptional regulator of 69 kDa, which is a RNA-binding protein found in yeast. Although its specific biological role remains unclear, MRN1 might be involved in translational regulation. Members in this family contain four copies of conserved RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 78 |
| >gnl|CDD|240939 cd12495, RRM3_hnRNPQ, RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
VK ++VRNL +TVT +E+ F FG+++ V+ KD YAF+ F++ G A
Sbjct: 1 VKVLFVRNLANTVTEEILEKAFGQFGKLER----VKKLKD-----YAFIHFDERDGAVKA 51
Query: 1093 I-QASPIQLAGRQVYIEERRP 1112
+ + + +L G + I +P
Sbjct: 52 MEEMNGKELEGENIEIVFAKP 72
|
This subgroup corresponds to the RRM3 of hnRNP Q, also termed glycine- and tyrosine-rich RNA-binding protein (GRY-RBP), or NS1-associated protein 1 (NASP1), or synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP). It is a ubiquitously expressed nuclear RNA-binding protein identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome. As an alternatively spliced version of NSAP, it acts as an interaction partner of a multifunctional protein required for viral replication, and is implicated in the regulation of specific mRNA transport. hnRNP Q has also been identified as SYNCRIP that is a dual functional protein participating in both viral RNA replication and translation. As a synaptotagmin-binding protein, hnRNP Q plays a putative role in organelle-based mRNA transport along the cytoskeleton. Moreover, hnRNP Q has been found in protein complexes involved in translationally coupled mRNA turnover and mRNA splicing. It functions as a wild-type survival motor neuron (SMN)-binding protein that may participate in pre-mRNA splicing and modulate mRNA transport along microtubuli. hnRNP Q contains an acidic auxiliary N-terminal region, followed by two well defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; hnRNP Q binds RNA through its RRM domains. . Length = 72 |
| >gnl|CDD|241043 cd12599, RRM1_SF2_plant_like, RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
VYV NLP + E+E+ F +G I + + R YAF+EFED ++AI+
Sbjct: 2 VYVGNLPGDIREREVEDLFYKYGPIVDIDLKLPPRPP----GYAFIEFEDARDAEDAIRG 57
|
This subgroup corresponds to the RRM1 of SF2, also termed SR1 protein, a plant serine/arginine (SR)-rich phosphoprotein similar to the mammalian splicing factor SF2/ASF. It promotes splice site switching in mammalian nuclear extracts. SF2 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal domain rich in proline, serine and lysine residues (PSK domain), a composition reminiscent of histones. This PSK domain harbors a putative phosphorylation site for the mitotic kinase cyclin/p34cdc2. . Length = 72 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (93), Expect = 0.003
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 370 GDFNKVVKLYERCLIA---CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426
GD+ + ++LYE+ L E + +EA G + A L +A + E
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 486
L + G + A Y+ E P EA+ A + LG E+A E+A
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKAL-ELDPDNAEALYNLALLLLELGRYEEALEALEKA 262
Query: 487 IAIEKGKEH 495
+ ++ +
Sbjct: 263 LELDPDLYN 271
|
Length = 291 |
| >gnl|CDD|240789 cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.003
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V NLP T+ E+ F+ +G + V V+N Y FV E+ ++AI+A
Sbjct: 2 LFVGNLPDATTSEELRALFEKYGTVTECDV-VKN--------YGFVHMEEEEDAEDAIKA 52
|
This subfamily corresponds to the RRM in CoAA (also known as RBM14 or PSP2) and RNA-binding protein 4 (RBM4). CoAA is a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner, and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. RBM4 is a ubiquitously expressed splicing factor with two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may also function as a translational regulator of stress-associated mRNAs as well as play a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RRMs, a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. This family also includes Drosophila RNA-binding protein lark (Dlark), a homolog of human RBM4. It plays an important role in embryonic development and in the circadian regulation of adult eclosion. Dlark shares high sequence similarity with RBM4 at the N-terminal region. However, Dlark has three proline-rich segments instead of three alanine-rich segments within the C-terminal region. . Length = 66 |
| >gnl|CDD|240801 cd12355, RRM_RBM18, RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDV-VGVCYAFVEFEDISGVQNAI 1093
+++ NL S +T F + + F +G+IK D +F ++ Y FV FE + A+
Sbjct: 2 LWIGNLDSRLTEFHLLKLFSKYGKIKKFDFLFHKSGPLKGQPRGYCFVTFETKEEAEKAL 61
Query: 1094 Q 1094
+
Sbjct: 62 K 62
|
This subfamily corresponds to the RRM of RBM18, a putative RNA-binding protein containing a well-conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The biological role of RBM18 remains unclear. . Length = 80 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 840 EEPVYQHPAPVLSENKFDVQHDA--SSPIPEQ-AGLAASDYVLEEEAREYVSSVHIEDDA 896
EEPV + H ++P+ EQ + SD + +E E+ V D
Sbjct: 896 EEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDE 955
Query: 897 TDNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQRKTY 956
T + + + EV + A + + P A + + +
Sbjct: 956 TADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNH 1015
Query: 957 AS 958
A+
Sbjct: 1016 AT 1017
|
Length = 1068 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1169 | |||
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 100.0 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 100.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 100.0 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 100.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.98 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2104 | 126 | consensus Nuclear transport factor 2 [Intracellula | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| cd00780 | 119 | NTF2 Nuclear transport factor 2 (NTF2) domain play | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 99.87 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.87 | |
| PF02136 | 118 | NTF2: Nuclear transport factor 2 (NTF2) domain; In | 99.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| KOG4353 | 139 | consensus RNA export factor NXT1 [RNA processing a | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.76 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.7 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.7 | |
| PLN03134 | 144 | glycine-rich RNA-binding protein 4; Provisional | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.68 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.68 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.67 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.66 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 99.64 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.62 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.58 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| KOG0113 | 335 | consensus U1 small nuclear ribonucleoprotein (RRM | 99.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.52 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.46 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 99.45 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.41 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.41 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.38 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.37 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.37 | |
| KOG0149 | 247 | consensus Predicted RNA-binding protein SEB4 (RRM | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| KOG4207 | 256 | consensus Predicted splicing factor, SR protein su | 99.37 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG0121 | 153 | consensus Nuclear cap-binding protein complex, sub | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.28 | |
| KOG0122 | 270 | consensus Translation initiation factor 3, subunit | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.27 | |
| KOG0125 | 376 | consensus Ataxin 2-binding protein (RRM superfamil | 99.26 | |
| PF00076 | 70 | RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.25 | |
| PLN03120 | 260 | nucleic acid binding protein; Provisional | 99.22 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.21 | |
| PLN03213 | 759 | repressor of silencing 3; Provisional | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| PLN03121 | 243 | nucleic acid binding protein; Provisional | 99.16 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.16 | |
| PF14259 | 70 | RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or | 99.14 | |
| KOG0130 | 170 | consensus RNA-binding protein RBM8/Tsunagi (RRM su | 99.14 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.14 | |
| KOG0126 | 219 | consensus Predicted RNA-binding protein (RRM super | 99.14 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.12 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 99.11 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.02 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.02 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.01 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 99.01 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.98 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.97 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.95 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.95 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 98.95 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.94 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 98.94 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 98.94 | |
| smart00362 | 72 | RRM_2 RNA recognition motif. | 98.94 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 98.93 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 98.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.91 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 98.89 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.88 | |
| smart00360 | 71 | RRM RNA recognition motif. | 98.88 | |
| KOG0108 | 435 | consensus mRNA cleavage and polyadenylation factor | 98.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.86 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 98.85 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.84 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.84 | |
| KOG0114 | 124 | consensus Predicted RNA-binding protein (RRM super | 98.81 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.81 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.8 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.8 | |
| COG0724 | 306 | RNA-binding proteins (RRM domain) [General functio | 98.79 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.76 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| cd00590 | 74 | RRM RRM (RNA recognition motif), also known as RBD | 98.75 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.75 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 98.73 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.72 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 98.71 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| smart00361 | 70 | RRM_1 RNA recognition motif. | 98.7 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 98.67 | |
| KOG4209 | 231 | consensus Splicing factor RNPS1, SR protein superf | 98.67 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.67 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG0153 | 377 | consensus Predicted RNA-binding protein (RRM super | 98.6 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 98.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.58 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 98.57 | |
| PF13893 | 56 | RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or | 98.54 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.52 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.52 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 98.51 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.49 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.49 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.45 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 98.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.4 | |
| KOG0533 | 243 | consensus RRM motif-containing protein [RNA proces | 98.38 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.37 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.37 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 98.33 | |
| KOG4208 | 214 | consensus Nucleolar RNA-binding protein NIFK [Gene | 98.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.32 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.32 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 98.32 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.31 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.28 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.24 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 98.23 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.21 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.2 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 98.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.18 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.16 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 98.15 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.11 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.1 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.1 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 98.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.07 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.06 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 98.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.05 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 98.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.0 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.95 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.9 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.87 | |
| KOG4454 | 267 | consensus RNA binding protein (RRM superfamily) [G | 97.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.84 | |
| KOG1995 | 351 | consensus Conserved Zn-finger protein [General fun | 97.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.82 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.81 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.76 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 97.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.73 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.71 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 97.68 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.66 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.63 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.63 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.62 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 97.6 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.54 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 97.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.5 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.48 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.39 | |
| PF10429 | 166 | Mtr2: Nuclear pore RNA shuttling protein Mtr2; Int | 97.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.32 | |
| KOG1855 | 484 | consensus Predicted RNA-binding protein [General f | 97.29 | |
| KOG4660 | 549 | consensus Protein Mei2, essential for commitment t | 97.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.26 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 97.26 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.24 | |
| cd00531 | 124 | NTF2_like Nuclear transport factor 2 (NTF2-like) s | 97.2 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.18 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 97.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.16 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.11 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.07 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.05 | |
| PF08777 | 105 | RRM_3: RNA binding motif; InterPro: IPR014886 This | 97.01 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.96 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.93 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 96.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.89 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 96.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.8 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.75 | |
| PF04059 | 97 | RRM_2: RNA recognition motif 2; InterPro: IPR00720 | 96.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.7 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.67 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.64 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 96.63 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 96.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.52 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.52 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.5 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.46 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 96.44 | |
| KOG2202 | 260 | consensus U2 snRNP splicing factor, small subunit, | 96.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.31 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.26 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 96.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.12 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 96.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.08 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 96.05 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.0 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 95.97 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 95.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.77 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 95.75 | |
| PF11608 | 90 | Limkain-b1: Limkain b1; InterPro: IPR024582 This e | 95.6 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 95.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.56 | |
| KOG3973 | 465 | consensus Uncharacterized conserved glycine-rich p | 95.53 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.39 | |
| PF15008 | 262 | DUF4518: Domain of unknown function (DUF4518) | 95.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.36 | |
| PF05172 | 100 | Nup35_RRM: Nup53/35/40-type RNA recognition motif; | 95.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.34 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.31 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 95.31 | |
| PF14605 | 53 | Nup35_RRM_2: Nup53/35/40-type RNA recognition moti | 95.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.26 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 95.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.2 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 95.13 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 94.94 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 94.9 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 94.88 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 94.86 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 94.76 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.72 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 94.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.59 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.57 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.38 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.38 | |
| PF08952 | 146 | DUF1866: Domain of unknown function (DUF1866) ; In | 94.31 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.15 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 94.0 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 93.88 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.76 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 93.67 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.56 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.52 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 93.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.49 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.41 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.28 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 93.18 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 93.07 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 93.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 92.97 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.96 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 92.83 | |
| KOG3152 | 278 | consensus TBP-binding protein, activator of basal | 92.77 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.5 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.48 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.41 | |
| KOG2253 | 668 | consensus U1 snRNP complex, subunit SNU71 and rela | 92.24 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 92.15 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 92.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.03 | |
| TIGR02246 | 128 | conserved hypothetical protein. This family consis | 91.94 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 91.89 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.59 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.52 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 91.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.32 | |
| KOG0115 | 275 | consensus RNA-binding protein p54nrb (RRM superfam | 91.18 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.07 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 91.04 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 91.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.03 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 90.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.85 | |
| PF13474 | 121 | SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE | 90.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.7 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.61 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.55 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 90.51 | |
| KOG4676 | 479 | consensus Splicing factor, arginine/serine-rich [R | 90.17 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.11 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.1 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.94 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 89.89 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.82 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.55 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 89.25 | |
| KOG1996 | 378 | consensus mRNA splicing factor [RNA processing and | 89.19 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.8 | |
| PF10309 | 62 | DUF2414: Protein of unknown function (DUF2414); In | 87.72 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 87.53 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.52 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.37 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 87.29 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.25 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.15 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 86.91 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.62 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.36 | |
| KOG2193 | 584 | consensus IGF-II mRNA-binding protein IMP, contain | 85.73 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 85.26 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 84.88 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.74 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 84.07 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 83.66 | |
| KOG2416 | 718 | consensus Acinus (induces apoptotic chromatin cond | 83.5 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.43 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.51 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.18 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 82.15 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 81.85 | |
| PF15023 | 166 | DUF4523: Protein of unknown function (DUF4523) | 81.65 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 81.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.11 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 81.05 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 80.96 | |
| PF14534 | 107 | DUF4440: Domain of unknown function (DUF4440); PDB | 80.43 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 80.37 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 80.2 |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-55 Score=494.32 Aligned_cols=543 Identities=41% Similarity=0.695 Sum_probs=459.7
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 162 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL 162 (1169)
....++|..+..+..|+++|+.|+...... ..++.+|.+|+.+|..||.|++||.+||+++.+.|+.+++.++|+|||
T Consensus 29 p~~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv 106 (577)
T KOG1258|consen 29 PDSLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV 106 (577)
T ss_pred cchhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445679999999999999999999988774 477999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH
Q 001060 163 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD 242 (1169)
Q Consensus 163 ~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~ 242 (1169)
+.+|.|+++|+.|+.|.....++++..|..|++|+.++|.+|.|+.||+.||+||..++.+.++..+|+|+|++|..++.
T Consensus 107 ~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 107 QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH-HHHHHHHHHH
Q 001060 243 RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE-ELEKYIAVRE 321 (1169)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~k~i~~~~ 321 (1169)
.+|..|+.+.+++++..+...+++..+...+-.. +.....+ ...+....+++.+..+... .++.. .+.+++..+.
T Consensus 187 ~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--~~~~~~~-~~~e~~~~~v~~~~~~s~~-l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 187 RHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--SKITHSQ-EPLEELEIGVKDSTDPSKS-LTEEKTILKRIVSIHE 262 (577)
T ss_pred HHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--hhccccc-ChhHHHHHHHhhccCccch-hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999987766544421 0000000 0111122233333333322 23333 6678889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 401 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~ 401 (1169)
.+|+...+..++++.||..|+||||||+|+++.++.+|+.|++|.++.|+++++..+|+||++.|.+|.++|++|+.+|+
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME 342 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001060 402 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 481 (1169)
..|+.+-|..++.++++++.++.+.++++++.|++.+|+++.|+.+|+++..++ |+...+-+.++.+++|+|+.+.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999999999999999999999999999999999999999996666 9999999999999999999999985
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001060 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 561 (1169)
Q Consensus 482 iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~ 561 (1169)
..+......++++.......++++++++.+...++.+.|+.++..++.+.|++..+|..++.|+...+...+.+.+..++
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~ 501 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPID 501 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHH
Confidence 33333334445555566778899999999999999999999999999999999999999999999988666677777776
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhh
Q 001060 562 DKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAK 638 (1169)
Q Consensus 562 eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~ 638 (1169)
...+....+.....+..+ +|++|.+.+|+.....+...++.+.|..++.....+....+..-..|++|...
T Consensus 502 ~~~~~~~~~~~~~~~~~~------k~~ef~e~~g~~~~~~~~~~~~l~~~l~q~~~~~~~~~~~~s~~~~d~~~~~~ 572 (577)
T KOG1258|consen 502 WKELKMLIDFDDSRSSTD------KYIEFLEWFGIDHKGAQDERPHLKNFLIQRPDNFKKMDTLESRFTNDPSKEAL 572 (577)
T ss_pred HHHHhhhccccccccchH------HHHHHHHhccchhHhHhhchHHHHHHHhhccchhcccchHHHHhcCChhhhcc
Confidence 666554322221122222 29999999999999999999999999776544333333334444445555433
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=497.30 Aligned_cols=388 Identities=36% Similarity=0.581 Sum_probs=233.6
Q ss_pred CCCCcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCccc-chhhHHHHHHHHhcCCCcce--eEeeeeccccC
Q 001060 716 PPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTE-SASSMLDIHSLVISLNFTAI--EIKTINSLGSW 792 (1169)
Q Consensus 716 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~-~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~ 792 (1169)
+...|+.||+.||+|||++|++.|+.||+||.++|+++|.+.+... .+++.++|+++|++|+|..| +|.++|+|.|+
T Consensus 9 ~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~ 88 (419)
T KOG0116|consen 9 PVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASL 88 (419)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhc
Confidence 4467889999999999999999999999999999999998876654 78889999999999999987 79999999999
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccCCCccCCCCCCCcCCccCCCCCCCCCCCCCCCc
Q 001060 793 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGL 872 (1169)
Q Consensus 793 ~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1169)
++||+|+|||.|++++. +.|+|+|||||+||+++|||+||||||||+++..+.. .. ++. .+.++ .
T Consensus 89 ~~GvvI~VtG~lt~~~~-~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~~-----~~--~vp----~~~~~---~ 153 (419)
T KOG0116|consen 89 EKGVVIMVTGYLTNKDG-PRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEAN-----TD--EVP----EANPA---V 153 (419)
T ss_pred cCCeEEEEEEEEEeCCC-cceEEEEEEEEeecCCceEEEechhhhcccccccccc-----cc--cCC----CCCcc---e
Confidence 99999999999999997 7999999999999999999999999999988621111 00 000 00000 0
Q ss_pred CCCCcchhhhhhccccccccCCccCCCCCCCCCCC-CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001060 873 AASDYVLEEEAREYVSSVHIEDDATDNYSLPEQQQ-DEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEP 951 (1169)
Q Consensus 873 ~~~~~~~ee~~~e~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~ 951 (1169)
.......+ ...+.+.+.+.+++.. +.... ...++...+..+ ..++.+++.... ..+... |.. +..+.
T Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~V~~~~~~~~~~~-~~~~~~ee~v~~-~~~~~~--p~~--~~~~~ 221 (419)
T KOG0116|consen 154 VVSVEKAS-QLVEAVVESEPEPEPE-----PKAEDEVEVPEEATVEDE-AKEKTKEELVIQ-QTVSEA--PAA--PQGDA 221 (419)
T ss_pred eecccccc-cccccccccCCCCccc-----ccccCceecccccccccc-ccccCchhhccc-ccccCC--Ccc--ccccc
Confidence 00000000 0000000000000000 00000 000000000000 011111100000 000000 111 13456
Q ss_pred CccchhhhhhhcccCCCCccc-cCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 001060 952 QRKTYASILRVSKSQSTSFVA-TQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDE 1030 (1169)
Q Consensus 952 ~p~s~As~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1169)
++++||+++..+....++... ..|.. . .+..+|...|.++... .++.| .... .......-...
T Consensus 222 ~~~s~asv~~~~~~~~~~~~~~~~p~~--~---~~~~~p~~~~~~~~~s--~~~~p---~~~~------~~~n~~~~~~~ 285 (419)
T KOG0116|consen 222 PKKSFASVVKVLKKSAAVQQSKGSPPQ--I---QPQQQPSTKPQAERQS--KPPSP---VRES------KSGNSNNQEPR 285 (419)
T ss_pred cchhhhhhhhhcccccccceeccCCCc--c---ccccCCccCcchhhcc--CCCCc---cccc------cccccCCccee
Confidence 799999998876654433111 11111 0 0000011111100000 00000 0000 00000111122
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..+.+|||+|||++++.++|+++|++||.|+..+|.++.+. ++..|||||+|.+.++++.||.+++..|+|++|.|+++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~-~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG-GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccC-CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 34566999999999999999999999999999999988743 44459999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001060 1111 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 1147 (1169)
Q Consensus 1111 r~~~~~~~rg~~~g~grg~~~~~~~~g~~ggrg~grg 1147 (1169)
+++.++.+..+++.++++|++++++|+++++||++|+
T Consensus 365 ~~~~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~ 401 (419)
T KOG0116|consen 365 RPGFRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRG 401 (419)
T ss_pred cccccccccCcccccCCCCCCCCCCCCCCCCCCCCcC
Confidence 9865543221112233444555555555554444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-53 Score=466.10 Aligned_cols=480 Identities=21% Similarity=0.349 Sum_probs=416.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 89 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 89 ~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
++.|+.||+|.++|..|+++++. ..++++|..||+++..||....+|+.|+..|++.++|+.++++|.|||... .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-Ln 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hh
Confidence 67799999999999999999986 399999999999999999999999999999999999999999999999987 89
Q ss_pred HHHHHHHHHHHHhhcCCHHH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHh
Q 001060 169 VDIWLHYCIFAINTYGDPET----IRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILE 235 (1169)
Q Consensus 169 ~~lw~~y~~~~~~~~~~~e~----Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~a~~iY~r~L~ 235 (1169)
+|||.+|+.+..++.++... ..+.|+.++..+|+|+.|..||+.|+.|++. +++++.+|++|+|+|.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988776544 4556999999999999999999999999875 4689999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 236 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
+|+.+++.+|+.|..|++..+. -.-+|
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~-----------------------------------------------------~tarK 192 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINI-----------------------------------------------------ITARK 192 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHH-----------------------------------------------------HHHHH
Confidence 9999999999999999544320 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC----hhcHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERDGD--------FNKVVKLYERCL 383 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~----~~~~~~W~~yl~~~~~~gd--------~~~a~~lyeraL 383 (1169)
++.-+...|.++....+-+...-++++|..+.|+|.. -.++++|+++|+|+++++- ..|+...|++||
T Consensus 193 ~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l 272 (656)
T KOG1914|consen 193 FIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL 272 (656)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence 5566666677777666777778888899888888865 4689999999999976542 248999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC---HHHHHH
Q 001060 384 IACANYPEYWIRYVLCMEASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD---IDGARA 446 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~~g~--------------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~---~~~A~~ 446 (1169)
.+.++++++|+.++.|+...++ .+++.++|+|++......+..+++.++.+++..-+ .+....
T Consensus 273 l~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~ 352 (656)
T KOG1914|consen 273 LYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHE 352 (656)
T ss_pred HHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHH
Confidence 9999999999999999988777 68999999999998878889999999999988666 778888
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+|++++....-+..-+|+.+.++.+|...++.||.+|.+|.+.... .-++|+.-|.+++.+.+|.+-|.+||+-
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~------~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT------RHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC------cchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 8888743334444557999999999999999999999999886532 2368888888888999999999999999
Q ss_pred HhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001060 527 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 606 (1169)
Q Consensus 527 Al~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R 606 (1169)
+|+++++++.+.+.|++|...+++.. ++|.+|||++.+. +++++.++||++||+||..+||+.++.++++|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~---N~R~LFEr~l~s~------l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDN---NARALFERVLTSV------LSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcch---hHHHHHHHHHhcc------CChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999998754 4899999999972 77899999999999999999999999999999
Q ss_pred HHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001060 607 HARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 645 (1169)
Q Consensus 607 ~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 645 (1169)
+.++|+.. .+.+. .+....+|||+++++|||+..
T Consensus 498 ~~~af~~~---qe~~~--~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 498 RFTAFPAD---QEYEG--NETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHhcchh---hcCCC--ChHHHHHHHHhhcccccccHH
Confidence 99999853 12222 356788999999999999976
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=376.17 Aligned_cols=484 Identities=21% Similarity=0.300 Sum_probs=383.7
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------------------------------hhhHHHHHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------------------------------QDNIVKIRRVYDAF 127 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--------------------------------~~~i~~Ar~~ye~~ 127 (1169)
++.-+-.-+++||..+-.+...|..++.+-.+.. =||+.-||++|++.
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445555666677777667777766666654421 04666677777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCH
Q 001060 128 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF 207 (1169)
Q Consensus 128 l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~ 207 (1169)
+...|+ ...|..|++++++.++++.|+.+|+|.|..|| ++.-|+.|++|+. ..|+...+|.+|++|++.+|.|....
T Consensus 168 ~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~-k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 168 MEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEE-KHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 777775 36677777777777778888888888888885 7888999999988 78888999999999999999888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhc
Q 001060 208 PLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKA 286 (1169)
Q Consensus 208 ~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~ 286 (1169)
.|...++.||..++++++|+.||+-+|.. |.+.-..+|..|..|+....... ..|+++.-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~--gIEd~Iv~----------------- 305 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE--GIEDAIVG----------------- 305 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh--hhHHHHhh-----------------
Confidence 89999999999999999999999999986 66677888888888765432111 11333210
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh-----cHHHHHH
Q 001060 287 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-----ELENWHN 361 (1169)
Q Consensus 287 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~-----~~~~W~~ 361 (1169)
..--++.+.+..++++.+.|.+|+... ...+..++.+..||++|. .|+|...+ -.-+|.+
T Consensus 306 -------KRk~qYE~~v~~np~nYDsWfdylrL~----e~~g~~~~Ire~yErAIa----nvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 306 -------KRKFQYEKEVSKNPYNYDSWFDYLRLE----ESVGDKDRIRETYERAIA----NVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred -------hhhhHHHHHHHhCCCCchHHHHHHHHH----HhcCCHHHHHHHHHHHHc----cCCchhHHHHHHHHHHHHHH
Confidence 111122233456778999999997554 334567778889999997 36775533 2356666
Q ss_pred HHHHHH-HcCChHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 362 YLDFIE-RDGDFNKVVKLYERCLIACANY----PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 362 yl~~~~-~~gd~~~a~~lyeraL~~~~~~----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
|+-|++ ...|.++++.+|+.||.+.|+. ..+|+.||.+..++.++..|+.++..||..+ |+ ..++-.|..++.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK-~KlFk~YIelEl 448 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PK-DKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cc-hhHHHHHHHHHH
Confidence 666653 5689999999999999999965 4799999999999999999999999999988 43 467777889999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH-HHHHHHHHHHHHhC
Q 001060 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSR 515 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~-l~~~~a~~~~~~~g 515 (1169)
+.+++|..|++|++- ++..|.++.+|.+++.++..+|+.++|+.+|+-|+... ..++|+ ||-.|++|+.. .|
T Consensus 449 qL~efDRcRkLYEkf-le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp-----~ldmpellwkaYIdFEi~-~~ 521 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKF-LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP-----ALDMPELLWKAYIDFEIE-EG 521 (677)
T ss_pred HHhhHHHHHHHHHHH-HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc-----ccccHHHHHHHhhhhhhh-cc
Confidence 999999999999996 89999999999999999999999999999999999876 245565 59999999987 99
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC--Ch-----------hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 001060 516 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQS--SP-----------KQIDFLEQLVDKFLMSNSDSPSTANAAEREE 582 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~--~~-----------~~~~~~r~l~eral~~~~~~~~~l~~~~~~~ 582 (1169)
.+++||.+|++.|+..++.+ +|..|+.||.+.. .. +.+..+|.+|++|.....+.. +++.|..
T Consensus 522 E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~---~KeeR~~ 597 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST---PKEERLM 597 (677)
T ss_pred hHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999999999998877 9999999999652 11 147789999999988765543 4789999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 583 LSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 583 i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
|++.|++||..||+..+++.|..++.+.++.
T Consensus 598 LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKK 628 (677)
T KOG1915|consen 598 LLEAWKNMEETFGTEGDVERVQSKMPKKVKK 628 (677)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHhccHHHHh
Confidence 9999999999999999999999998887764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=341.48 Aligned_cols=460 Identities=19% Similarity=0.238 Sum_probs=384.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 85 EDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 85 ~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
-+.|+..|+.|-.+...|..+++.-+. ++++.+||++|+++|..+-.+..+|++||+++++.++...|+.+++|++..
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEes--q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEES--QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 345788999999999999999999887 579999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001060 165 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 244 (1169)
Q Consensus 165 ~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~ 244 (1169)
.|.-..+|+.|+-++. .+|+..-||++|+|-+..-| ....|..||+||+..+++++|+.||.|.+-..++ -.-
T Consensus 137 lPRVdqlWyKY~ymEE-~LgNi~gaRqiferW~~w~P----~eqaW~sfI~fElRykeieraR~IYerfV~~HP~--v~~ 209 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEE-MLGNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK--VSN 209 (677)
T ss_pred cchHHHHHHHHHHHHH-HhcccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc--HHH
Confidence 9999999999988877 89999999999999998655 3589999999999999999999999999876433 345
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH
Q 001060 245 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY 324 (1169)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y 324 (1169)
|..|..|+..+..-. ..+.+|...-+..++ .+.-..+...-...=
T Consensus 210 wikyarFE~k~g~~~---------~aR~VyerAie~~~~--------------------------d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVA---------LARSVYERAIEFLGD--------------------------DEEAEILFVAFAEFE 254 (677)
T ss_pred HHHHHHHHHhcCcHH---------HHHHHHHHHHHHhhh--------------------------HHHHHHHHHHHHHHH
Confidence 677777766654221 123344332222221 111122222333333
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhccCCHHHHHHH
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN--------KVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~--------~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
...++++.++-.|.-+|.. -|.+ ...+++..|..|+.+-||.. +-..-|+..+..+|.+.+.|+.|
T Consensus 255 e~qkE~ERar~iykyAld~-----~pk~-raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDH-----IPKG-RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCcc-cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 4568899999999999873 1111 12578999999999999864 34567999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhcc--------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhcCCC----hHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKR--------LPEIHLFAARFKE-QNGDIDGARAAYQLVHTETSPG----LLEAI 463 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~--------~~~l~~~~a~~~e-~~g~~~~A~~~~~~a~~~~~P~----~~~~~ 463 (1169)
..+.+..|+.+..+++|+||+...+|- .--+|+.|+.+++ ...+.+.++++|+.+ +++.|. ...+|
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~-l~lIPHkkFtFaKiW 407 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC-LDLIPHKKFTFAKIW 407 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhcCcccchHHHHH
Confidence 999999999999999999999877653 3458899998876 478999999999997 788887 67899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 543 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~ 543 (1169)
+.++.++.|+.++..|+.++-.||...|. +.++-.|+.++.+ +++++..|++|++-|+..|.+...|..|+.
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 99999999999999999999999998864 4588899999988 999999999999999999999999999999
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 544 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 544 ~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
||.++|+ .+.+|.+|+-|+.... .+..+.+|..||+||-..|..+....+|+|..++-+.
T Consensus 480 lE~~Lgd---tdRaRaifelAi~qp~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 480 LETSLGD---TDRARAIFELAISQPA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHhhh---HHHHHHHHHHHhcCcc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 9999998 6779999999988643 2455679999999999999999999999999988654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=314.40 Aligned_cols=457 Identities=17% Similarity=0.241 Sum_probs=363.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
+...+-+|+..++.||.|.-+|+.|+++++. ++..++.|+.|++++.-||.-..+|..|+.-|+..++|..++.+|-|
T Consensus 24 i~~D~lrLRerIkdNPtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 24 IHGDELRLRERIKDNPTNILSYFQLIQYLET--QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred CCchHHHHHHHhhcCchhHHHHHHHHHHHhh--hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 4455569999999999999999999999998 56999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHH
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYG-----DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRV 226 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~-----~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~a 226 (1169)
||... .+++||..|+.+...... .--.+.+.|+..+..++.++.+..+|+.|..|+.. +++++.+
T Consensus 102 CL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 102 CLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99986 899999999999984432 23456778999999999999999999999999864 5789999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccC
Q 001060 227 AMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 306 (1169)
Q Consensus 227 ~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~ 306 (1169)
|.+|+|+|..|+.+++.+|+.|..|+.+.+. + +
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~--~-T-------------------------------------------- 213 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNK--I-T-------------------------------------------- 213 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHH--H-H--------------------------------------------
Confidence 9999999999999999999999998654210 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc----CCCChhcHHHHHHHHHHHHHcC-----C--hHHH
Q 001060 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV----KPLSVTELENWHNYLDFIERDG-----D--FNKV 375 (1169)
Q Consensus 307 ~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v----~pl~~~~~~~W~~yl~~~~~~g-----d--~~~a 375 (1169)
-+|++.-...+|..+...-+.+..+-+++++.-|-. .-.....-..|.++|+|+.+.| + ..++
T Consensus 214 ------arKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi 287 (660)
T COG5107 214 ------ARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRI 287 (660)
T ss_pred ------HHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHH
Confidence 011222122223322222222333333333211000 0011123356999999997653 2 3488
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 001060 376 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-- 453 (1169)
Q Consensus 376 ~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-- 453 (1169)
-.+|++++...+..+++|+.|..|+...++-+.|+...+|++ +.+|.+++.++.+++...+-++.+.+|+++..
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888887 45677999999999999999888888886410
Q ss_pred ---------------hcCC------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 454 ---------------ETSP------------GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 454 ---------------~~~P------------~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
.-+| ....+|+-+.+...|....+.|+.+|.++....- ..+++|+..
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~------~~h~vyi~~ 437 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI------VGHHVYIYC 437 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC------CCcceeeeH
Confidence 0112 1223577788888888889999999999887641 124688888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 586 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~ 586 (1169)
|.+++.+.|+..-|.+||+-+|.++|++..+...|..|....++.. .+|.+||.++..- ...+.++||+.
T Consensus 438 A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~---naraLFetsv~r~-------~~~q~k~iy~k 507 (660)
T COG5107 438 AFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE---NARALFETSVERL-------EKTQLKRIYDK 507 (660)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH---HHHHHHHHhHHHH-------HHhhhhHHHHH
Confidence 8888888999999999999999999999999999999999998854 4899999877643 22355789999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 587 FLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 587 ~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
||+||..+|++..+-.+++|..+++|.
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999999999999999999999999985
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=292.09 Aligned_cols=467 Identities=17% Similarity=0.204 Sum_probs=339.4
Q ss_pred cCCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------
Q 001060 75 DGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR------- 147 (1169)
Q Consensus 75 ~~~~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~------- 147 (1169)
+++..++.++-..|....+.||.+..+|..-+++.+.. |++..|+.+..+..+..|.+.+.|+.-+.+.--
T Consensus 261 ~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEva--gKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vv 338 (913)
T KOG0495|consen 261 GGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVA--GKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVV 338 (913)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHh--hHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHH
Confidence 34455677777888889999999999999999988874 578878777777777766666666655443200
Q ss_pred ----------------h----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC----
Q 001060 148 ----------------V----GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD---- 203 (1169)
Q Consensus 148 ----------------~----~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d---- 203 (1169)
. .+...-..+++++|+.+|.|+.||..-..++ +.+.||.+++||++.+++.
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE-----~~~darilL~rAveccp~s~dLw 413 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELE-----EPEDARILLERAVECCPQSMDLW 413 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhcc-----ChHHHHHHHHHHHHhccchHHHH
Confidence 0 0111112233344444444444443333322 2344555555555554441
Q ss_pred -----------------------CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHHhcC
Q 001060 204 -----------------------YLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-----PIQQLDRYFSSFKEFAASR 255 (1169)
Q Consensus 204 -----------------------~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-----p~~~~~~~~~~~~~~~~~~ 255 (1169)
+.+..||..-..+|+.+|+.+.+.+|..|+|.. -..+.++++......+...
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 002344555555555555555555555555432 1123444444443332211
Q ss_pred CCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 335 (1169)
Q Consensus 256 ~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~ 335 (1169)
. ..+. +++ -..++.. +..+.+....++ .-.+.+.+.+-++-++.
T Consensus 494 s---v~Tc-QAI--i~avigi-----------------------------gvEeed~~~tw~-~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 494 S---VITC-QAI--IRAVIGI-----------------------------GVEEEDRKSTWL-DDAQSCEKRPAIECARA 537 (913)
T ss_pred C---hhhH-HHH--HHHHHhh-----------------------------ccccchhHhHHh-hhHHHHHhcchHHHHHH
Confidence 0 0000 010 0011111 001111111122 22345666677888888
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
+|-.+|+ ..|....+|...+.|++..|..+....++++++..||..+.+|++|+.-....|+.-.|+.++.+
T Consensus 538 Vya~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 538 VYAHALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 8999998 78888899999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
|++.+ |++.+||++...++.++..++.||.+|.++ .. ......+|++.+.+++-+++.++|+.++++||+.+|
T Consensus 610 af~~~-pnseeiwlaavKle~en~e~eraR~llaka-r~-~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp---- 682 (913)
T KOG0495|consen 610 AFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA-RS-ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP---- 682 (913)
T ss_pred HHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH-hc-cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC----
Confidence 99988 889999999999999999999999999998 33 344678999999999999999999999999999985
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 575 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l 575 (1169)
+.+.+|..++.++.. .++++.||..|..+++++|++..||..++.+|...+. +-.+|.+++|+.-.+|++.
T Consensus 683 --~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk~~--- 753 (913)
T KOG0495|consen 683 --DFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPKNA--- 753 (913)
T ss_pred --chHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCCcc---
Confidence 557899999999877 8999999999999999999999999999999999876 5679999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 576 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 576 ~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
.+|..-+.+|...|+.+.+..+-.|+.+-+|..
T Consensus 754 ------~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 754 ------LLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred ------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 599999999999999999999999999888764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-30 Score=287.66 Aligned_cols=497 Identities=16% Similarity=0.224 Sum_probs=357.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHH
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV--------GSMDKVVEVYE 159 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~--------~~~e~A~~l~e 159 (1169)
|+.-|-.||+++..|..+|..-.. ....+..-+|+++|+.+|.++.+|..|...-..+ ..|+.+-.+|+
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 445588999999999999998554 4778899999999999999999999999544333 23889999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
|||...-..+.+|+.||+|++ ..++....|.+|++||...+..-+ ..||..|+.|..+.+-.+-+.++|+|.|+..+.
T Consensus 93 r~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH-~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 93 RCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQH-DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhh-ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH
Confidence 999976678899999999999 789999999999999998875433 489999999999999999999999999999666
Q ss_pred hHHHHHHHHHHHHhc----CCCccccCHHHHHHHH-HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 240 QLDRYFSSFKEFAAS----RPLSELRTAEEVDAAA-VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~----~~~~~~~~~eea~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
..+.+..-+...... .-+..++..++..-.+ ..-++...+...-+......++...++.+..-.+..++ +.+-
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft--Dq~g 248 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT--DQLG 248 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc--HHHH
Confidence 444433222111000 0000000001100000 00000000000000001111122223333333333333 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc-------------------------
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD------------------------- 369 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~------------------------- 369 (1169)
+++..+.+.|...+.+++|+..|+++|.... . -.+...++..|+.|+++.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-t----vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVM-T----VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-e----hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 6778889999999999999999999987421 1 112234555566665321
Q ss_pred -------------------------------------CChHHHHHHHHHHHHh-cc-----CCHHHHHHHHHHHHHcCCh
Q 001060 370 -------------------------------------GDFNKVVKLYERCLIA-CA-----NYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 370 -------------------------------------gd~~~a~~lyeraL~~-~~-----~~~e~W~~~a~~l~~~g~~ 406 (1169)
|+..+.+..|..|+.. +| .-..+|..++.+|+..|++
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 2233344445444443 22 2236999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-------------------hHHHHH
Q 001060 407 DLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-------------------LLEAII 464 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-------------------~~~~~~ 464 (1169)
+.|+.+|++|++..-+ +...+|+.||.++.++.+++.|+++.+++. . .|. .+.+|.
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-H-VPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-c-CCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 9999999999975423 347899999999999999999999999872 1 222 356899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc--CCCHHHHHHHH
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--QLSKPLLEALI 542 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~--p~s~~l~~~~a 542 (1169)
.|++++...|-++..+.+|++.|++-- ..|.+-++||.||.. ..-++++.++|++++.++ |.-.++|..|+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 999999999999999999999999863 348899999999876 777999999999999987 56678998776
Q ss_pred Hh-HhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 543 HF-ESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 543 ~~-E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
.- -...|. ...+.+|.|||+||.. ||++..+.|+..|..||+.+|-.....++++|+....+.
T Consensus 555 tkfi~rygg-~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 555 TKFIKRYGG-TKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 43 334443 3378899999999994 678899999999999999999999999999998766553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-28 Score=276.24 Aligned_cols=423 Identities=17% Similarity=0.225 Sum_probs=306.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001060 120 IRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 199 (1169)
Q Consensus 120 Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~ 199 (1169)
||.++.++++..|.+.++|+.|+.++ .|+.|.+++.++-+..|.+..+|+.-+.++. .+|+.+...++..++|..
T Consensus 395 arilL~rAveccp~s~dLwlAlarLe----tYenAkkvLNkaRe~iptd~~IWitaa~LEE-~ngn~~mv~kii~rgl~~ 469 (913)
T KOG0495|consen 395 ARILLERAVECCPQSMDLWLALARLE----TYENAKKVLNKAREIIPTDREIWITAAKLEE-ANGNVDMVEKIIDRGLSE 469 (913)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHH----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 55555555555555555555555444 4555555555555555555555555555554 556666666666665522
Q ss_pred c--------------------------------------CCCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-chh
Q 001060 200 V--------------------------------------GTDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQ 239 (1169)
Q Consensus 200 ~--------------------------------------g~d~~-s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p~~ 239 (1169)
. |.+-. ....|..-.+.....+.++-++.||..+|+. |..
T Consensus 470 L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 470 LQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred HhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 1 11100 1233444444444556678889999999987 443
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
..+|.....|+.++.- .|+...+.+++. +..+ ..+.+|-+
T Consensus 550 --~slWlra~~~ek~hgt-----~Esl~Allqkav----------------------~~~p--------kae~lwlM--- 589 (913)
T KOG0495|consen 550 --KSLWLRAAMFEKSHGT-----RESLEALLQKAV----------------------EQCP--------KAEILWLM--- 589 (913)
T ss_pred --hHHHHHHHHHHHhcCc-----HHHHHHHHHHHH----------------------HhCC--------cchhHHHH---
Confidence 4567777666655432 222211111111 1111 11222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
....+-..++.-.++..+..++. .+|.+.++|+.-+.++-++..+++++.+|.++....+ ...+|++++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~--------~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~ 660 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFE--------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANL 660 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHH--------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHH
Confidence 22334455777888888888877 5777889999999998888999999999999987544 57899999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
+.-++..++|+.+++++++.+ |++..+|+++++++++.++++.||..|..- ++..|....+|+.++.++.+.|++-+|
T Consensus 661 er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G-~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQG-TKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhc-cccCCCCchHHHHHHHHHHHhcchhhH
Confidence 888999999999999999998 899999999999999999999999999986 788999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh--------
Q 001060 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-------- 551 (1169)
Q Consensus 480 ~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~-------- 551 (1169)
+.+++++.-.+|.+ ..+|+...+++.+ .|+.+.|..++.+||+.+|.+..||-.-+.|+-..+..
T Consensus 739 R~ildrarlkNPk~------~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 739 RSILDRARLKNPKN------ALLWLESIRMELR-AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred HHHHHHHHhcCCCc------chhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 99999999888643 5689999999988 99999999999999999999999998888877553221
Q ss_pred -------------------hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001060 552 -------------------KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 552 -------------------~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~ 612 (1169)
..++.+|+.|+|++...+++. .+|.-|..|+..||+.+..+.|+++....-|
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G---------D~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG---------DAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc---------hHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 125566777999999998876 5899999999999999999999999998887
Q ss_pred CC
Q 001060 613 PH 614 (1169)
Q Consensus 613 ~~ 614 (1169)
.+
T Consensus 883 ~h 884 (913)
T KOG0495|consen 883 TH 884 (913)
T ss_pred CC
Confidence 65
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-29 Score=282.87 Aligned_cols=423 Identities=16% Similarity=0.153 Sum_probs=358.8
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
++.-...-..+++.+|.-.+++..|+..+... |+++.|..+|+.++++.|+..+.|+.++..+...|+.+.|..+|..
T Consensus 98 ~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhhhhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 44555566678999999999999999999884 6999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
+|+++|+......+...++. ..|++++|...|.+|+... +--...|..+.-....+|++-.++.-|.+++++.+..
T Consensus 176 alqlnP~l~ca~s~lgnLlk-a~Grl~ea~~cYlkAi~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 176 ALQLNPDLYCARSDLGNLLK-AEGRLEEAKACYLKAIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred HHhcCcchhhhhcchhHHHH-hhcccchhHHHHHHHHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc
Confidence 99999999988888888887 8999999999999999944 4456789999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001060 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 320 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~ 320 (1169)
++.+++....+.. +...++|..+....+..-..... ...-+
T Consensus 252 ~dAYiNLGnV~ke------~~~~d~Avs~Y~rAl~lrpn~A~---------------------------------a~gNl 292 (966)
T KOG4626|consen 252 LDAYINLGNVYKE------ARIFDRAVSCYLRALNLRPNHAV---------------------------------AHGNL 292 (966)
T ss_pred hHHHhhHHHHHHH------HhcchHHHHHHHHHHhcCCcchh---------------------------------hccce
Confidence 8888888766532 22334444433222221111100 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
.-+|.+.+..+-||..|+++|. +.|...+++.+++..+...|+..+++..|.+||..||++++....++.++
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~--------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALE--------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHh--------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3368888999999999999999 78888999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 480 (1169)
..+|.+++|..+|.+|++.+ |.+...+..+|.++.++|++++|..+|+.+ +.+.|...+.+.++++.+..+|+.+.|.
T Consensus 365 ~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea-lrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEA-LRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHH-HhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999999999998 899999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC----hhHHHH
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS----PKQIDF 556 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~----~~~~~~ 556 (1169)
++|.+||.++| ++.+.+.+++.+... .|++.+|+..|+.||++.|+.+.-+-++++-.....+ .++++.
T Consensus 443 q~y~rAI~~nP------t~AeAhsNLasi~kD-sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 443 QCYTRAIQINP------TFAEAHSNLASIYKD-SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHhcCc------HHHHHHhhHHHHhhc-cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999984 667888999988655 9999999999999999999998776665554433322 223445
Q ss_pred HHHHHHHHh
Q 001060 557 LEQLVDKFL 565 (1169)
Q Consensus 557 ~r~l~eral 565 (1169)
+.++..+-+
T Consensus 516 l~sivrdql 524 (966)
T KOG4626|consen 516 LVSIVRDQL 524 (966)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-26 Score=255.68 Aligned_cols=440 Identities=17% Similarity=0.271 Sum_probs=306.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKL------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 154 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~------~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A 154 (1169)
..+-.-.|+++++.-|.+...|..+++.-... ...-+.....+|+++|-.--.++..|+.|..+.++++.+.+.
T Consensus 42 ~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~t 121 (835)
T KOG2047|consen 42 DKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRT 121 (835)
T ss_pred hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHH
Confidence 34667789999999999999999998543321 013456788899999988888999999999999999999999
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC-------------------------------
Q 001060 155 VEVYERAVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG------------------------------- 201 (1169)
Q Consensus 155 ~~l~eraL~~~P~--s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g------------------------------- 201 (1169)
+.+|.|+|...|- ..++|-.|++|+. ..+-++.+.++|+|-|+..|
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 9999999998873 6789999999998 67777777777777552110
Q ss_pred ---------------------CC-------------------C--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--c
Q 001060 202 ---------------------TD-------------------Y--LSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN--P 237 (1169)
Q Consensus 202 ---------------------~d-------------------~--~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~--p 237 (1169)
.+ + .-..||..+++|..+.|.+++|+.+|..++.. -
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 00 0 01356777777777778999999999999987 4
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchh-hhccccccCCc-------cccccCC--ccccCc
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE-VKANEEEVQPD-------ATEQTSK--PVSAGL 307 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~-~~~~~~~~~~~-------~~e~~~~--~~~~~~ 307 (1169)
..+..++|+.|..|+..-.-..+ - ...+..+. ....+-+.+.. .-..+.+ .+..++
T Consensus 281 vrDFt~ifd~Ya~FEE~~~~~~m-------------e-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 281 VRDFTQIFDAYAQFEESCVAAKM-------------E-LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------------h-hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 45889999999888543210000 0 00000000 00000000000 0000000 011233
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC--hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 308 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS--VTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 308 ~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~--~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
.+.+.|.+-+. +| .+...+.+..|.++|++ |.|.- ..--.+|..+++|++..|+.+.++.+|+++++.
T Consensus 347 ~nV~eW~kRV~----l~--e~~~~~~i~tyteAv~~----vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 347 HNVEEWHKRVK----LY--EGNAAEQINTYTEAVKT----VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred ccHHHHHhhhh----hh--cCChHHHHHHHHHHHHc----cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 44444444322 22 13455667788888875 22211 112367999999999999999999999999988
Q ss_pred ccCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-----------------ccChHHHHHHHHHHHHcCCHHHH
Q 001060 386 CANY----PEYWIRYVLCMEASGSMDLAHNALARATHVFV-----------------KRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 386 ~~~~----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-----------------p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
.-.. ..+|..+|....++.+++.|+.++++|+..-- .++..+|.+|+++++..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 6544 36899999888888889999999999885310 12567999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC--CHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR--NAEKARQ 522 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g--~~e~Ar~ 522 (1169)
+.+|+++ +++.--.+.+.++|+.|+....-++++.++|++.|.+++ .+...++|..|..-..+..| +++.||.
T Consensus 497 k~vYdri-idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 497 KAVYDRI-IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999997 666666788889999998888888999999999999886 35556788776533333344 6889999
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHhHhhCCC
Q 001060 523 ILVDSLDHVQL--SKPLLEALIHFESIQSS 550 (1169)
Q Consensus 523 i~~kAl~~~p~--s~~l~~~~a~~E~~~~~ 550 (1169)
+|++||+.+|. .+.+++.|+.||...|-
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhH
Confidence 99999998873 23677888888877653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=261.36 Aligned_cols=429 Identities=16% Similarity=0.128 Sum_probs=253.5
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001060 78 VPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l 157 (1169)
.+.+..+++.....-..||.+.+....|...+-+. .++++...--..++...|...+.+-+|+..+...|+++.|..+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc--cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 35577888888889999999988877777666553 4777777777888999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 158 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 158 ~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
|+.++++.|..+|.|+.++..+. +.|+.+.|...|-.||+..+. -.-.-.....+.+..|++.+|..+|.+++++-
T Consensus 139 y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~---l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 139 YRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPD---LYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcc---hhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 99999999999999999999998 899999999999999995553 33445566777888999999999999999984
Q ss_pred hhhHHHHHHHHHHHHhcCC-CccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRP-LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~-~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~ 316 (1169)
+...-.|-+....|...-. ...+...++|.. .++ .....|
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk------------------------------------ldP---~f~dAY 255 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK------------------------------------LDP---NFLDAY 255 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhc------------------------------------CCC---cchHHH
Confidence 4211111111111100000 000000011100 000 000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
++ ++.+|++...+++|+.+|++++. +.|....++-+++-.+.+.|+.+-|+..|+|||...|+.++.+..+
T Consensus 256 iN-LGnV~ke~~~~d~Avs~Y~rAl~--------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 256 IN-LGNVYKEARIFDRAVSCYLRALN--------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred hh-HHHHHHHHhcchHHHHHHHHHHh--------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 22 23445555555555555555544 3444444444444444444555555555555555555555555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+..|...|+..+|..+|.+|+..+ |+.+.....++.++.++|.+++|..+|+++ .+..|+......+++.++..+|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~a-l~v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKA-LEVFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHH-HhhChhhhhhhhhHHHHHHhcccH
Confidence 555555555555555555555544 455555555555555555555555555554 444555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~ 556 (1169)
++|+.+|+.||.+.| +....+.+.+..+- ..|+...|...|.+|+..+|.-++-+.+++.+...-|+ +..
T Consensus 405 ~~Ai~~YkealrI~P------~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~ 474 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKP------TFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---IPE 474 (966)
T ss_pred HHHHHHHHHHHhcCc------hHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHH
Confidence 555555555555542 23334444444432 25555555555555555555444444444444433333 444
Q ss_pred HHHHHHHHhhcCCCCC
Q 001060 557 LEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 557 ~r~l~eral~~~~~~~ 572 (1169)
+..-|+.+|...||.+
T Consensus 475 AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHccCCCCc
Confidence 4445555555555444
|
|
| >KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=221.41 Aligned_cols=115 Identities=33% Similarity=0.558 Sum_probs=106.5
Q ss_pred CcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccCCCce
Q 001060 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGV 796 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~~~~i 796 (1169)
.+..||..||++||.+|+.+|..|..||.+. ||++|+|..++|+.+ |.+|+.||||++| .|+++||||+.+|||
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~-S~LTfEGqq~qG~~~---IveKl~sLpFqkiqh~IttvD~QPt~~g~i 80 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDT-SMLTFEGQQIQGKDA---IVEKLTSLPFQKIQHSITTVDSQPTPDGGI 80 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhccc-ceeeEcchhhcchHH---HHHHHhcCChhhhhceeeecccccCCCCcE
Confidence 3478999999999999999999999999997 799999999888866 5789999999988 599999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEec
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 838 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 838 (1169)
||+|+|+|+.+++ ++.+|+|+|+|.+.. ++|||.|||||+-
T Consensus 81 lv~V~G~Lk~dEd-~~~~FsQvF~L~~n~~~~~~v~ndiFRLn 122 (126)
T KOG2104|consen 81 LVMVVGQLKLDED-PILRFSQVFLLKPNIQGSYYVFNDIFRLN 122 (126)
T ss_pred EEEEeeeeeeccC-CccceeeEEEEeEcCCCCEEEEeeeEEEe
Confidence 9999999999965 899999999999984 8999999999984
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-24 Score=282.76 Aligned_cols=469 Identities=11% Similarity=0.008 Sum_probs=293.2
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...+++.|+++++.+|.+...+..++..+... +++++|+.++++++..+|.+...|..++.++...|++++|+++|++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44555555555555555555555555444442 3555555555555555555555555555555555555555555555
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
++...|.+...|..++..+. ..|++++|+..|++++...+ ....+|..++.+....++++.|+.+|.+++...+.+
T Consensus 491 a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 566 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEKVLTIDP---KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE 566 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 55555555555555555444 44555555555555554222 233444444444444455555555555554443222
Q ss_pred HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC-----------------CCccchhhhccccccCCccccccCCcc
Q 001060 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA-----------------PSETGAEVKANEEEVQPDATEQTSKPV 303 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~-----------------~~e~~~~~~~~~~~~~~~~~e~~~~~~ 303 (1169)
...++.....+..... .+++......+... ..+........+. .++.
T Consensus 567 ~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~----- 630 (899)
T TIGR02917 567 IEPALALAQYYLGKGQ------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK-----LLAL----- 630 (899)
T ss_pred hhHHHHHHHHHHHCCC------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHh-----
Confidence 2222221111111100 01111100000000 0000000000000 0000
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 304 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 383 (1169)
Q Consensus 304 ~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL 383 (1169)
.+.+.. .+.....+|...+++++++..|+++++ .+|.+...|..++..+...|+++.++.+++++.
T Consensus 631 --~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 631 --QPDSAL----ALLLLADAYAVMKNYAKAITSLKRALE--------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred --CCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000111 223345567777788888888888877 566677788888888888888888888888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 384 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
...+.++..|..++.++...|++++|...|++++... |++ ..++.++.++...|++++|...++++ ++..|++..++
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~ 773 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSS-QNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLR 773 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCc-hHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHH
Confidence 8888888888888888888888888888888888876 444 66777888888888888888888887 67788888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 543 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~ 543 (1169)
..++.++...|++++|+.+|+++++..|. .+.++..++..+.. .|+ .+|+.+++++++..|++..++..++.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 88898888889999999999999888753 25677777777665 777 77999999999998988888888888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001060 544 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 608 (1169)
Q Consensus 544 ~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~ 608 (1169)
+....+. .+.+..+|++++...+.++ .++..+.......|+.+.+.++.++..
T Consensus 846 ~~~~~g~---~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGE---ADRALPLLRKAVNIAPEAA---------AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCC---HHHHHHHHHHHHhhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8777776 5667888999988776654 578888888888899888888888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-24 Score=278.73 Aligned_cols=476 Identities=12% Similarity=0.039 Sum_probs=367.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+..+.+++.|+++++.+|.+...|..++..+... ++.++|++.|++++...|.....+..++..+.+.|++++|++++
T Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELDPENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 5578999999999999999999999999998874 59999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
++++...|.+..+|..++..+. ..+++++|+..|+++++.. +.....|..++......++++.|..+|++++...+
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKALSIE---PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988 8899999999999999844 34567788888888889999999999999998755
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC-----------------CCccchhhhccccccCCccccccCC
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA-----------------PSETGAEVKANEEEVQPDATEQTSK 301 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~-----------------~~e~~~~~~~~~~~~~~~~~e~~~~ 301 (1169)
.+...+......+..... .+++......+... ..+.......... .++
T Consensus 531 ~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~---- 595 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGN------EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE-----AAD---- 595 (899)
T ss_pred CcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH-----HHH----
Confidence 544443333332222111 12222111111111 1111110000000 000
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 302 PVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYER 381 (1169)
Q Consensus 302 ~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyer 381 (1169)
..+.+. ..+..+..+|...+++++++..|+++++ .++.+...|..++..+...|++++|+..|++
T Consensus 596 ---~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 596 ---AAPDSP----EAWLMLGRAQLAAGDLNKAVSSFKKLLA--------LQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred ---cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 001111 1233445667778888888888888887 4566677888888888888888888888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001060 382 CLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 382 aL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
++..+|.+.+.|..++.++...|++++|..+++++.... +..+.++..++.++...|++++|...|+++ +...|++ .
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~ 737 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA-LKRAPSS-Q 737 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCc-h
Confidence 888888888888888888888888888888888888766 677888888888888888888888888887 6667776 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
.+..++.++.+.|++++|...+++++...|. .+.++..++.++.. .|++++|..+|+++++..|++...+..+
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPN------DAVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7778888888888888888888888887653 25677777877666 8899999999999999999888888877
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 542 a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
+.+....++ ..+...+++++...++++ .++..+...+...|+.+.+.+++++..+..+.
T Consensus 811 ~~~~~~~~~----~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD----PRALEYAEKALKLAPNIP---------AILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc----HHHHHHHHHHHhhCCCCc---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777665 226778888888776665 46777777888889999999999999888765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-23 Score=273.72 Aligned_cols=420 Identities=13% Similarity=0.100 Sum_probs=316.4
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHH----------------HHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYW----------------KKYAD 143 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W----------------~~~a~ 143 (1169)
..+.+.+.|.+++..+|+|.+++..+++++.. .|+.++|.+.+++++...|.+..+| +.++.
T Consensus 43 ~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~--~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 43 REDLVRQSLYRLELIDPNNPDVIAARFRLLLR--QGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 45688999999999999999999999999887 4699999999999999999998886 56677
Q ss_pred HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001060 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 223 (1169)
Q Consensus 144 ~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~ 223 (1169)
++.+.|++++|+++|++++...|.+.++-..|........++.++|+..|+++++.. +....++..+..++...++.
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~---P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY---PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHccCCH
Confidence 888999999999999999999999887766665555445689999999999999954 44678899999999999999
Q ss_pred HHHHHHHHHHHhcchhhH--HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccch---hhhccccccCCccccc
Q 001060 224 SRVAMIYTRILENPIQQL--DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA---EVKANEEEVQPDATEQ 298 (1169)
Q Consensus 224 ~~a~~iY~r~L~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~e~ 298 (1169)
++|+.+|++++..+.... ...|.. .+... .. ..++..+.........+... ....+... ...
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~--~l~~~-~~-----~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~-----~~~ 264 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYG--QIKDM-PV-----SDASVAALQKYLQVFSDGDSVAAARSQLAEQ-----QKQ 264 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHH--HHhcc-CC-----ChhhHHHHHHHHHHCCCchHHHHHHHHHHHH-----HHh
Confidence 999999999988754322 112211 11000 00 00000000000111100000 00000000 000
Q ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHH
Q 001060 299 TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKL 378 (1169)
Q Consensus 299 ~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~l 378 (1169)
. .+... ....+...+...+++++|+..|+++|+ ++|.+.++|..++..+.+.|++++|+..
T Consensus 265 ~--------~dp~~---~~~~~G~~~~~~g~~~~A~~~l~~aL~--------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 265 L--------ADPAF---RARAQGLAAVDSGQGGKAIPELQQAVR--------ANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred c--------cCcch---HHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 00000 011235567788899999999999998 6788889999999999999999999999
Q ss_pred HHHHHHhccCCHH--HH----------H--HHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH
Q 001060 379 YERCLIACANYPE--YW----------I--RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 379 yeraL~~~~~~~e--~W----------~--~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
|++++..+|.+.. .| . ..+..+...|++++|+..|++++++. |++..+++.++.++...|++++|
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999887653 23 2 33556678899999999999999987 78899999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHH------------------------------------------HHHcCCHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANM------------------------------------------ERRLGNLEDAFSL 482 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~------------------------------------------e~r~g~~e~A~~i 482 (1169)
+..|+++ ++++|++..++..++.+ +...|++++|+.+
T Consensus 405 ~~~y~~a-L~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 405 ERYYQQA-LRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999998 78899987766544433 3457999999999
Q ss_pred HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 483 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 483 y~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
|++++...|+ .+.++..++.++.. .|++++|+.+|+++++..|++...+..++.+.
T Consensus 484 ~~~Al~~~P~------~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 484 QRQRLALDPG------SVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999864 36678888888777 99999999999999999999987766554443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-23 Score=275.24 Aligned_cols=463 Identities=12% Similarity=0.033 Sum_probs=339.7
Q ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 82 SGEEDRLWNIVKA--NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 82 ~~~~~~l~~al~~--nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 159 (1169)
..+...|.+.... +|... -..++..+.. .+++++|+..|+++|+.+|.+..+|..++.++.+.|++++|+.+|+
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~--~~~~G~~~~~--~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR--ARAQGLAAVD--SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH--HHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555554333 33321 1233444444 3688899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCHH------------HHHH--HHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHH
Q 001060 160 RAVQGVTYSVD------------IWLH--YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSR 225 (1169)
Q Consensus 160 raL~~~P~s~~------------lw~~--y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~ 225 (1169)
++++..|.+.. .|.. .+.... ..+++++|+..|+++++..+ .....+..+...+...|++++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~Al~~~P---~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL-KANNLAQAERLYQQARQVDN---TDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHH
Confidence 99988886542 2222 233444 57888999999999998544 345667777788888889999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcccc
Q 001060 226 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305 (1169)
Q Consensus 226 a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~ 305 (1169)
|+..|+++|+..+.+...+......+.... .+++.. ++..+..... .. ....
T Consensus 404 A~~~y~~aL~~~p~~~~a~~~L~~l~~~~~-------~~~A~~----~l~~l~~~~~--~~---------~~~~------ 455 (1157)
T PRK11447 404 AERYYQQALRMDPGNTNAVRGLANLYRQQS-------PEKALA----FIASLSASQR--RS---------IDDI------ 455 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-------HHHHHH----HHHhCCHHHH--HH---------HHHH------
Confidence 999999999875554444433333332111 122221 1111100000 00 0000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 306 ~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
........+..+..+|...+++++|+..|+++++ ++|.+..++..++..+.+.|++++|+.+|++++..
T Consensus 456 ---~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 456 ---ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred ---HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0000011233456678889999999999999998 78888889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc---------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p---------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
.|.+++.++.++.++...++.++|+..|+++...... -.....+..+..+...|++++|+.+++ ..
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~ 599 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQ 599 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hC
Confidence 9999999999999999999999999999875432100 012234567788889999999999876 37
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
|.+..+++.++.++.+.|++++|+.+|+++++..|. .+.++..++.++.. .|++++|+++|+++++..|++..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChH
Confidence 888999999999999999999999999999999864 36788999999877 89999999999999999999999
Q ss_pred HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001060 537 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 609 (1169)
Q Consensus 537 l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~ 609 (1169)
++..++......++ .+.+..+|++++...++.+.. .....++.....+....|+.+.+...+++...
T Consensus 673 ~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~---~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 673 TQRRVALAWAALGD---TAAAQRTFNRLIPQAKSQPPS---MESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHhhhCccCCcc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877777776 566889999998876554311 12345677778889999999999999988854
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-23 Score=256.41 Aligned_cols=413 Identities=12% Similarity=0.031 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 178 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~ 178 (1169)
...+..++..+.+ .+++++|+++|+++|...|+ ..+|..++..+.+.|++++|++.|+++|...|.+.+.|+..+..
T Consensus 127 a~~~k~~G~~~~~--~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYR--NKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456788888777 46999999999999999996 68999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh------hHHHHH-------
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ------QLDRYF------- 245 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~------~~~~~~------- 245 (1169)
+. ..|++++|+..|..++...+.+ ...+...+...+.. .+...+..+++..+. .+..++
T Consensus 204 ~~-~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 204 YD-GLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 88 8999999999998777643322 22222222211111 111112222221100 001111
Q ss_pred --------------------HHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcccc
Q 001060 246 --------------------SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305 (1169)
Q Consensus 246 --------------------~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~ 305 (1169)
..+..+... ......+++..+...++..-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~---~~~~~y~~A~~~~~~al~~~---------------------------- 324 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPES---KADESYEEAARAFEKALDLG---------------------------- 324 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHh---hhhhhHHHHHHHHHHHHhcC----------------------------
Confidence 111000000 00001122221111111000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 306 ~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
... .........++.+|...+++++|+..|+++|. ++|.....|..++..+...|++++|+..|+++|..
T Consensus 325 -~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 325 -KLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred -CCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000 01111334556778889999999999999998 78888899999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
+|.++++|+.++.++...|++++|+..|++++.+. |++..+|+.++.++.+.|++++|+..|+++ ++..|.+..+|..
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~P~~~~~~~~ 472 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC-KKNFPEAPDVYNY 472 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCChHHHHH
Confidence 99999999999999999999999999999999988 889999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
++.++..+|++++|+..|++|+.+.+...........++..+..++...|++++|+.+|+++++++|++...+..++.+.
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999986432111111123333444444468999999999999999999998888888888
Q ss_pred hhCCChhHHHHHHHHHHHHhhcC
Q 001060 546 SIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 546 ~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
...|. .+.+..+|++++...
T Consensus 553 ~~~g~---~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 553 LQQGD---VDEALKLFERAAELA 572 (615)
T ss_pred HHccC---HHHHHHHHHHHHHHh
Confidence 88887 677888999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-22 Score=252.15 Aligned_cols=427 Identities=14% Similarity=0.124 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
..++..+..+.+.|++++|++.|+++|...|. ..+|...+..+. ..+++++|+..|+++|+. ++.....|.....
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALEL---DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH
Confidence 34677788999999999999999999999985 778888888888 789999999999999994 4446778888888
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhh---HHHHHHHH---------HHHHhcCCCccccCHHHHHHHHHHHhhCCCccchh
Q 001060 216 YEYMQQEWSRVAMIYTRILENPIQQ---LDRYFSSF---------KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE 283 (1169)
Q Consensus 216 ~e~~~~~~~~a~~iY~r~L~~p~~~---~~~~~~~~---------~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~ 283 (1169)
....+++++.|+..|..++.++..+ ...++... .......+.. +....... ..+..+....
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~-~~~~~~~~----~~~~~~~~~~-- 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPEN-LPSVTFVG----NYLQSFRPKP-- 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHH----HHHHHccCCc--
Confidence 8889999999999998887764321 12222111 1111111110 00000000 0000000000
Q ss_pred hhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHH
Q 001060 284 VKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYL 363 (1169)
Q Consensus 284 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl 363 (1169)
...+ .....+..+... ..+. .+..........+.+++++..|++++.. ..+.+.....|..++
T Consensus 276 --~~~~--~~~~~~~~~~~~-------~~~~-~l~~~~~e~~~~~~y~~A~~~~~~al~~-----~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 276 --RPAG--LEDSNELDEETG-------NGQL-QLGLKSPESKADESYEEAARAFEKALDL-----GKLGEKEAIALNLRG 338 (615)
T ss_pred --chhh--hhcccccccccc-------cchH-HHHHHHHHhhhhhhHHHHHHHHHHHHhc-----CCCChhhHHHHHHHH
Confidence 0000 000000000000 0000 0000001113446799999999999972 124567778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHH
Q 001060 364 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 443 (1169)
Q Consensus 364 ~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~ 443 (1169)
.++...|++++|+..|+++|...|.+...|+.++.++...|++++|+..|++++++. |+++.+|+.++.++...|++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999987 8999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001060 444 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 523 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i 523 (1169)
|+..|+++ ++++|++...|+.++.++.++|++++|+..|++++...|. .+.+|..++.++.. .|++++|++.
T Consensus 418 A~~~~~ka-l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~-~g~~~~A~~~ 489 (615)
T TIGR00990 418 AGKDYQKS-IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLD-QNKFDEAIEK 489 (615)
T ss_pred HHHHHHHH-HHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-ccCHHHHHHH
Confidence 99999998 8899999999999999999999999999999999998753 37788889998877 9999999999
Q ss_pred HHHHhhhcCCCHHHHHH--------HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 524 LVDSLDHVQLSKPLLEA--------LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 524 ~~kAl~~~p~s~~l~~~--------~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
|++|+++.|.+...+.. .+.++ ..+ +.+.+..+|++++...+++. .++..........|
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~-~~~---~~~eA~~~~~kAl~l~p~~~---------~a~~~la~~~~~~g 556 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQ-WKQ---DFIEAENLCEKALIIDPECD---------IAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHH-Hhh---hHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcc
Confidence 99999999875433221 11222 123 36778899999998876553 36778888889999
Q ss_pred CHHHHHHHHHHHHhhhCC
Q 001060 596 DAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 596 d~~~i~~v~~R~~~~~~~ 613 (1169)
+.+.+.+.+++..++...
T Consensus 557 ~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAELART 574 (615)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999988654
|
|
| >cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-26 Score=219.19 Aligned_cols=116 Identities=42% Similarity=0.653 Sum_probs=104.1
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC--CcceeEeeeeccccCCCceE
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGVL 797 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~--~~~~~i~~~d~q~~~~~~il 797 (1169)
|.+||+.||++||++|+++|+.|++||+++|.|+ |+| .....|.++|.++|++|| ...++|.++|||++.+++|+
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~-~~~--~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~il 78 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLS-REG--MKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGVI 78 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEE-ECC--ceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCEE
Confidence 5789999999999999999999999999987665 577 223446677899999999 45678999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
|+|+|.|+.++. ++++|+|+|+|.+++++|||+||||||+|
T Consensus 79 i~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 79 VMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEEEECCC-CceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 999999999985 79999999999999999999999999986
|
This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-21 Score=245.08 Aligned_cols=406 Identities=12% Similarity=0.030 Sum_probs=299.9
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 159 (1169)
....+++.+.+++..+|.+..+|..++..+... +++.+|..+|+++|+.+|.+..+|..++.++...|++++|+.+++
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345667777777777888888888888888774 588888888888888888888888888888888888888888888
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
+++...|.+.. |+.++..+. ..|++++|...|+++++.. +....++..++..+...+..+.|...+++++..|..
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~---P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRA---PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 88888888888 888877777 7788888888888888844 336677777777777777788888888777764431
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
....-+..... . +.. .
T Consensus 183 ~~~l~~~~~~~-----------------~----~r~----------------------------------------~--- 198 (765)
T PRK10049 183 KRDLEADAAAE-----------------L----VRL----------------------------------------S--- 198 (765)
T ss_pred HHHHHHHHHHH-----------------H----HHh----------------------------------------h---
Confidence 00000000000 0 000 0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhccCCcccCCCC-hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCCHHH
Q 001060 320 REEMYKKAKEF---DSKIIGFETAIRRPYFHVKPLS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---ANYPEY 392 (1169)
Q Consensus 320 ~~~~y~~~~~~---~~ai~~~e~al~r~~~~v~pl~-~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~---~~~~e~ 392 (1169)
........+++ ++|+..|+.+++. +...|.. +.....+...+..+...|++++|+..|++++... |.+...
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~--~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~ 276 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEAL--WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR 276 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhh--cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH
Confidence 00000111222 5677778877752 0111111 1122233332333356689999999999999875 555566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-----------
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSP----------- 457 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P----------- 457 (1169)
|+ +.++...|++++|+.+|+++++.. |.. ...+..++..+.+.|++++|+.+++++ .+..|
T Consensus 277 ~l--a~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~-~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 277 WV--ASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHT-INNSPPFLRLYGSPTS 352 (765)
T ss_pred HH--HHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH-hhcCCceEeecCCCCC
Confidence 74 777888999999999999998765 443 345666666778999999999999997 55555
Q ss_pred --C--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 458 --G--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 458 --~--~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
+ ...+++.++.++...|++++|+.+|++++...|.+ +.++..++.++.. .|++++|+++|+++++..|+
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQA-RGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC
Confidence 2 34577889999999999999999999999998643 6799999998776 99999999999999999999
Q ss_pred CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 534 SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 534 s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
+..++...++.....++ .+.+..++++++...|+++
T Consensus 426 ~~~l~~~~a~~al~~~~---~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 426 NINLEVEQAWTALDLQE---WRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCH
Confidence 99999999998888876 7779999999999988876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-21 Score=237.57 Aligned_cols=347 Identities=12% Similarity=0.012 Sum_probs=291.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
++...++..++.++..+|.+.+++..|+..... .|++++|...|++++..+|++..+|..++.++...|++++|+..|
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~--~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA--SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346789999999999999999999999987766 469999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-c
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-P 237 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p 237 (1169)
++++...|.+..+|...+..+. ..|+.++|...|++++...+. +...+..... ....|++++|..+|++++.. |
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~~~~~~~P~---~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLARTQAQEVPP---RGDMIATCLS-FLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhCCC---CHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988 899999999999998885543 4444444333 45679999999999988765 2
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i 317 (1169)
.... .. .
T Consensus 209 ~~~~-~~------------------------------------------------------------------------~ 215 (656)
T PRK15174 209 LERQ-ES------------------------------------------------------------------------A 215 (656)
T ss_pred Ccch-hH------------------------------------------------------------------------H
Confidence 1110 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhccCCHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK----VVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~----a~~lyeraL~~~~~~~e~W 393 (1169)
......+...+++++++..|++++. ++|.....|..++..+...|++++ |+..|++++..+|.+..+|
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~ 287 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIV 287 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 1112344567788889999999988 677788899999999889999885 8999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
..++.++...|++++|+..|++++++. |+++.++..++.++.+.|++++|+..|+++ .+..|++...+...+.++...
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a-l~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL-AREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHC
Confidence 999999999999999999999999987 889999999999999999999999999998 777998887777778888999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
|++++|+..|++++...|.. + ...+++|+..|.++++..+..
T Consensus 366 G~~deA~~~l~~al~~~P~~--------~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASH--------L-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred CCHHHHHHHHHHHHHhChhh--------c-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 99999999999999998632 0 233567888888888866544
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-21 Score=222.27 Aligned_cols=447 Identities=17% Similarity=0.190 Sum_probs=324.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV---GSMDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~---~~~e~A~ 155 (1169)
+....++..++.-+.+|++++.....|+.++.+. +++++.+..-..+...+|.|+.+|+.|+.-+... .+...+.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 3466899999999999999999999999999995 5999999999999999999999999999877644 5678899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHh---hhHHH
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTY------GDPETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQ---QEWSR 225 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~------~~~e~Ar~~~erAl~~~g~d~~s-~~lw~~y~~~e~~~---~~~~~ 225 (1169)
.+|+++|... .++-+|..|+.|..... ++++..|.+|++||...|.++.. ..||..|++|+... -+.+.
T Consensus 171 ~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 171 ELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999964 89999999999998532 46789999999999999988864 69999999999864 23456
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcccc
Q 001060 226 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305 (1169)
Q Consensus 226 a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~ 305 (1169)
+..++.+.|..|.+. +.....|...-..+-+.
T Consensus 250 v~a~~~~el~~~~D~-~~~~~~~~~~sk~h~~~----------------------------------------------- 281 (881)
T KOG0128|consen 250 VIALFVRELKQPLDE-DTRGWDLSEQSKAHVYD----------------------------------------------- 281 (881)
T ss_pred HHHHHHHHHhccchh-hhhHHHHHHHHhcchHH-----------------------------------------------
Confidence 888899999988442 22222222210000000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 306 ~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
......+...++...-+-.|++.+. .++.....|+.|++|+...|++.++...++|++.-
T Consensus 282 ------------~~~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 282 ------------VETKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred ------------HHhccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 0000111112222222233555555 56777889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhcCCChHHHH
Q 001060 386 CANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA-RAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A-~~~~~~a~~~~~P~~~~~~ 463 (1169)
.+...++|+.|+.++.. .+-.+.+..++-|++..+ |-...+|-.+...+++.+..... ...+.+.+. - -..++
T Consensus 342 ~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c-p~tgdL~~rallAleR~re~~~vI~~~l~~~ls---~-~~~l~ 416 (881)
T KOG0128|consen 342 MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC-PWTGDLWKRALLALERNREEITVIVQNLEKDLS---M-TVELH 416 (881)
T ss_pred ccccHHHHhhhhhhcccccccccccccccchhhcCC-chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH---H-HHHHH
Confidence 99999999999998864 333455667888888765 66667777766555665543332 223333311 1 11122
Q ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 464 IKHANMERRL------GNLEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 464 ~~~a~~e~r~------g~~e~A~~iy~~Al~~~~~~~~--~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.+..+.++. .+++..++.|+.|......... ..+.-.+...|+.+++...++.+.||.|+...+.....+.
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i 496 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI 496 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH
Confidence 2222222222 2456777788888775542111 1223456788999999989999999999999998877777
Q ss_pred H-HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 536 P-LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 536 ~-l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
. .|..|+.+|..+++ ...+|.++.+|+.... .+++..+|++.|..||..+|+++.+..+-.+....
T Consensus 497 ag~Wle~~~lE~~~g~---~~~~R~~~R~ay~~~~------~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr 563 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGD---GPSARKVLRKAYSQVV------DPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPR 563 (881)
T ss_pred HHHHHHHHhHHHHhCC---chhHHHHHHHHHhcCc------CchhHHHHHHHHHHHHhccccHHHHhhhHHhhcch
Confidence 6 99999999999887 4457887777777543 34567799999999999999998887766555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=230.98 Aligned_cols=328 Identities=11% Similarity=-0.021 Sum_probs=279.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+|+..+|+.+++..+..+|.+.+++..++...+..|+++.|+..|++++...|.+.+.|...+..+. ..|++++|+..|
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l 133 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLA 133 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999988 889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
++++...+ ....+|...+..+...|+++.|..+|++++...+.....++..
T Consensus 134 ~~Al~l~P---~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-------------------------- 184 (656)
T PRK15174 134 EQAWLAFS---GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-------------------------- 184 (656)
T ss_pred HHHHHhCC---CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH--------------------------
Confidence 99999544 4677888889989999999999999998876633322211110
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
..+...+++++|+..|+.+++. .|.
T Consensus 185 ------------------------------------------------~~l~~~g~~~eA~~~~~~~l~~-----~~~-- 209 (656)
T PRK15174 185 ------------------------------------------------LSFLNKSRLPEDHDLARALLPF-----FAL-- 209 (656)
T ss_pred ------------------------------------------------HHHHHcCCHHHHHHHHHHHHhc-----CCC--
Confidence 0133456777788888887762 111
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHhhccChHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL----AHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~----A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.....+...+..+...|++++|+..|++++...|.++.+|+.++..+...|++++ |+..|++++++. |++..++.
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~ 288 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVT 288 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 1122334445666789999999999999999999999999999999999999986 899999999987 88999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
.++.++...|++++|+..|+++ +++.|++..++..++.++.+.|++++|+..|++++...|. .+.++...+..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~a-l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~------~~~~~~~~a~a 361 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQS-LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV------TSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------chHHHHHHHHH
Confidence 9999999999999999999998 7899999999999999999999999999999999998763 23344455666
Q ss_pred HHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 510 LHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.. .|++++|+..|+++++..|++.
T Consensus 362 l~~-~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 362 LLQ-AGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHH-CCCHHHHHHHHHHHHHhChhhc
Confidence 655 9999999999999999998864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=235.92 Aligned_cols=372 Identities=8% Similarity=-0.030 Sum_probs=284.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.++++|+.+|.+.++|..|+.++... +++++|+.+++++++.+|.+.. |..++.++...|++++|+.+|
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~--g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA--GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 4577999999999999999999999999988774 6999999999999999999999 999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH---HHH-----HhhhH---HHHH
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE---YEY-----MQQEW---SRVA 227 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~---~e~-----~~~~~---~~a~ 227 (1169)
++++...|.+.++++.++..+. ..+..+.|+..+++++. .+.. ....-|..... +.. ..+++ ++|+
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~-~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALR-NNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH-HCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 9999999999999999999887 78889999999987775 2210 00000000000 000 00111 2233
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCc
Q 001060 228 MIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 307 (1169)
Q Consensus 228 ~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 307 (1169)
..|++++..-.. . +
T Consensus 217 ~~~~~ll~~~~~---------------~---------------------------------------------------p 230 (765)
T PRK10049 217 AQYDALEALWHD---------------N---------------------------------------------------P 230 (765)
T ss_pred HHHHHHHhhccc---------------C---------------------------------------------------C
Confidence 333333221000 0 0
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001060 308 TEAEELEK-YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 386 (1169)
Q Consensus 308 ~~~~~~~k-~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~ 386 (1169)
........ .+..+..+ ...+++++|+..|+++++. .+..|.....| +++.+...|++++|+.+|++++...
T Consensus 231 ~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 231 DATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred ccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 00000000 11112223 3557899999999998873 22235555566 4778889999999999999999877
Q ss_pred cCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc------------c--ChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 387 ANY----PEYWIRYVLCMEASGSMDLAHNALARATHVFVK------------R--LPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 387 ~~~----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p------------~--~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
|.. .+.+..++..+...|++++|+.+|++++...++ + ...+++.++.++...|++++|+++|
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 665 467777777788899999999999999987631 1 2356788999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 449 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 449 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
+++ +...|++..+|+.++.++...|++++|+.+|++++.+.|++ +.++...+..... .|++++|..++++++
T Consensus 383 ~~a-l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~------~~l~~~~a~~al~-~~~~~~A~~~~~~ll 454 (765)
T PRK10049 383 REL-AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN------INLEVEQAWTALD-LQEWRQMDVLTDDVV 454 (765)
T ss_pred HHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 998 78899999999999999999999999999999999998643 5688888887666 999999999999999
Q ss_pred hhcCCCHHHH
Q 001060 529 DHVQLSKPLL 538 (1169)
Q Consensus 529 ~~~p~s~~l~ 538 (1169)
+..|+++.+.
T Consensus 455 ~~~Pd~~~~~ 464 (765)
T PRK10049 455 AREPQDPGVQ 464 (765)
T ss_pred HhCCCCHHHH
Confidence 9999998544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-18 Score=215.69 Aligned_cols=498 Identities=11% Similarity=-0.024 Sum_probs=341.0
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.|+++|+.+|.+..+++.|++++... |+.++|+.+.+++++.+|.+..++..++.+ +++++|+.+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~--g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF--GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHH
Confidence 4566899999999999999999999999999985 599999999999999999999998888666 8999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHH-----HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001060 159 ERAVQGVTYSVDIWLHYCIFA-----INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 233 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~-----~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~ 233 (1169)
++++...|.+.++.+..+..+ + ...+.+.+++.++ +.....+++...+...-.+++..+++|+.|+.+|.++
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l-~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNAL-RLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchh-hhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999988888761 1 1234566666666 5545454445556666577788899999999999999
Q ss_pred Hhcchhh------HHHHHHHH-H--HHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccc--c-----------
Q 001060 234 LENPIQQ------LDRYFSSF-K--EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE--V----------- 291 (1169)
Q Consensus 234 L~~p~~~------~~~~~~~~-~--~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~--~----------- 291 (1169)
++..+.+ +..+|... . ....... ..+.....+..+....+....+.......+... .
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~-~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLDDRLLALQS-QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhc-hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 9983322 22222220 0 0000000 011100000000000111111110000000000 0
Q ss_pred --------C--------------------------------CccccccCCccccCcchHHHHHHHHH------------H
Q 001060 292 --------Q--------------------------------PDATEQTSKPVSAGLTEAEELEKYIA------------V 319 (1169)
Q Consensus 292 --------~--------------------------------~~~~e~~~~~~~~~~~~~~~~~k~i~------------~ 319 (1169)
. .+..+++......+.. ...++.. .
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM---LEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH---HHHHHhhccccCchhHHHHH
Confidence 0 0000111000000000 0000000 0
Q ss_pred HHHHHHH-----------------HHHHHHHHHHHHHhhccCC-c-----------------------------------
Q 001060 320 REEMYKK-----------------AKEFDSKIIGFETAIRRPY-F----------------------------------- 346 (1169)
Q Consensus 320 ~~~~y~~-----------------~~~~~~ai~~~e~al~r~~-~----------------------------------- 346 (1169)
...+|+. .+++.+|...|+.+...+- -
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 0111221 2334444444443332100 0
Q ss_pred ---------------------ccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 347 ---------------------HVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 347 ---------------------~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
..-+..|. +...|+.++.++.. ++..+|+..|.+++...|.+. ..+.++..+...
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~ 522 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQV 522 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHC
Confidence 01112344 67788888888766 788889999999999988653 355556666789
Q ss_pred CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 404 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 483 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy 483 (1169)
|++++|+..|++++... + ....|+.++.++.+.|++++|..+|+++ +++.|.+..++..++....+.|++++|...|
T Consensus 523 Gr~eeAi~~~rka~~~~-p-~~~a~~~la~all~~Gd~~eA~~~l~qA-L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLHD-M-SNEDLLAAANTAQAAGNGAARDRWLQQA-EQRGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhccC-C-CcHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987653 3 3456788899999999999999999998 7788988877776666666779999999999
Q ss_pred HHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHH
Q 001060 484 EQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 563 (1169)
Q Consensus 484 ~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~er 563 (1169)
+++++..| . +.+|..++.++.+ .|++++|...|++++++.|++..++..++.+....+. .+.+..+|++
T Consensus 600 ~~AL~l~P------~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~---~eeAi~~l~~ 668 (987)
T PRK09782 600 TRSLNIAP------S-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD---IAQSREMLER 668 (987)
T ss_pred HHHHHhCC------C-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 99999885 2 5688899988877 9999999999999999999999999999888887776 5668889999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 564 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 564 al~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++...|+++ .++..........|+.+.+...+++..++-|+.
T Consensus 669 AL~l~P~~~---------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 669 AHKGLPDDP---------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999988776 578888888899999999999999999998764
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-19 Score=198.72 Aligned_cols=444 Identities=14% Similarity=0.179 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001060 118 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197 (1169)
Q Consensus 118 ~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl 197 (1169)
.++..+|.+++.+|+.+..+|..|+.++.+.+.+.++.++|.+||..||++++||+.-|.++.+..-+.+.||.+|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999977777999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCCccc---cCHHHHHHHH
Q 001060 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI----QQLDRYFSSFKEFAASRPLSEL---RTAEEVDAAA 270 (1169)
Q Consensus 198 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~----~~~~~~~~~~~~~~~~~~~~~~---~~~eea~~~~ 270 (1169)
. .++.+..||..|.++|++.-..-. .-++.+.... ..++..-..+..+......... ...++-.+
T Consensus 168 R---~npdsp~Lw~eyfrmEL~~~~Kl~---~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~-- 239 (568)
T KOG2396|consen 168 R---FNPDSPKLWKEYFRMELMYAEKLR---NRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE-- 239 (568)
T ss_pred h---cCCCChHHHHHHHHHHHHHHHHHH---HHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH--
Confidence 9 566699999999999987422211 1223333211 1222222222222111100000 00000000
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHH-HHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAVREE-----------MYKKAKEFDSKIIGFE 338 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~k~i~~~~~-----------~y~~~~~~~~ai~~~e 338 (1169)
....+.+... .+....+.++..+ +. ..+.+ .+.+..+.. .+...-+.+.+..+|+
T Consensus 240 --~~d~~kel~k---~i~d~~~~~~~~n---p~-----~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~e 306 (568)
T KOG2396|consen 240 --KFDFLKELQK---NIIDDLQSKAPDN---PL-----LWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYE 306 (568)
T ss_pred --HHHHHHHHHH---HHHHHHhccCCCC---Cc-----cHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHH
Confidence 0001111111 0000001111111 11 11111 111111100 0111113445556788
Q ss_pred HhhccCCcccCCCChhcHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHH
Q 001060 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERD------GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 412 (1169)
Q Consensus 339 ~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~------gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~v 412 (1169)
.+++ .-.+..+|..||++..+. ..+...+.+|+.+......++...-.|+..+.......+++.+
T Consensus 307 e~v~---------~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 307 EAVK---------TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHH---------HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 8876 223457899999987533 2456788899998888777777777776655544445556655
Q ss_pred HHHHH-HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CCChHHHHHHHHHHHHHcCCHH-HHH-HHHHH
Q 001060 413 LARAT-HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SPGLLEAIIKHANMERRLGNLE-DAF-SLYEQ 485 (1169)
Q Consensus 413 l~rAl-~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----~P~~~~~~~~~a~~e~r~g~~e-~A~-~iy~~ 485 (1169)
-.+.+ +.+ .++..+|+.....+.+... .+.-+|+.+...+ .......|.... +..... ... .++..
T Consensus 378 a~~l~~e~f-~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 378 AVKLTTELF-RDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHhhHHHh-cchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHH
Confidence 55555 444 6888999998887764322 2222333221111 122233344433 111121 222 23333
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001060 486 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565 (1169)
Q Consensus 486 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral 565 (1169)
++.... +..-++-..|.++++. .|.+++||++|.+...+.|-+..++..++.||..+-.-+ +.++|.||++++
T Consensus 451 ~~s~~~-----~~~~tl~s~~l~~~~e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 451 LLSVIG-----ADSVTLKSKYLDWAYE-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRAL 523 (568)
T ss_pred HHHhcC-----CceeehhHHHHHHHHH-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHH
Confidence 333321 2223466788888888 777999999999999999999999999999998763222 688999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 566 MSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 566 ~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
...+.++ ++|..|+.||..+|..+.+..++.|+.+.+.+.
T Consensus 524 ~~fg~d~---------~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 524 REFGADS---------DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHhCCCh---------HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 9987655 699999999999999999999999999998764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-19 Score=198.09 Aligned_cols=432 Identities=13% Similarity=0.066 Sum_probs=306.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
++++++|+++|..+|+..|+-+-++-+.+..+...|+++++++-+.++|.+.|.-+...+.-+.-.. .+|+.+++ +|
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E-~lg~~~ea--l~ 204 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE-QLGKFDEA--LF 204 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH-hhccHHHH--HH
Confidence 5799999999999999999988999999999999999999999999999999988888888777666 77888777 44
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH--HHHhcch-hhHHHHHHHHHHHHhcCCCccccCH-HHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT--RILENPI-QQLDRYFSSFKEFAASRPLSELRTA-EEVDAA 269 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~--r~L~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-eea~~~ 269 (1169)
+--+..+-.+|....+-...-+.+..++ .+.+.+.|. |--..|. ..+..+|..|..-....+.+..-.. ......
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 4444334344544444333333333332 233444443 1111222 2455555555432211111111101 111111
Q ss_pred HHHHhhCCCccch-hhhccccccCCccccccCCccccCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001060 270 AVAVAAAPSETGA-EVKANEEEVQPDATEQTSKPVSAGLTE--AEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYF 346 (1169)
Q Consensus 270 ~~~~~~~~~e~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~ 346 (1169)
.+.++....+... ..+....+ ...+......+..+ .+.+...+..++-.+.-.+....+...|+.+|+
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~-----~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~---- 354 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEE-----CLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK---- 354 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHH-----hhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----
Confidence 1111222111110 00000000 00000000001011 123333444555556666778888888999998
Q ss_pred ccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 347 HVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 347 ~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
+++.....+..++..+....+.++....|.++..++|.++++++..+++..-.+++++|..-|++++.+. |.+.-
T Consensus 355 ----l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~ 429 (606)
T KOG0547|consen 355 ----LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAY 429 (606)
T ss_pred ----cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhH
Confidence 7777777788888888888999999999999999999999999999999988999999999999999987 89999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
.++.++-.+.+++.++++...|+.+ ++..|..++++..++.++..+++|++|.+.|++||++.+...-....+..+++-
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~-kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEA-KKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 9999999999999999999999998 788999999999999999999999999999999999987522111123345555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+-++.+-.+++..|.+++++|++.+|.+..-+..++.|+..++. ++.+..+||+++..
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~l 566 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQL 566 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Confidence 55544546899999999999999999999999999999999876 78889999998664
|
|
| >PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=193.54 Aligned_cols=113 Identities=35% Similarity=0.618 Sum_probs=102.0
Q ss_pred hHhHHHHHHHHhhhh-CcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCc--ceeEeeeecc--ccCCCceE
Q 001060 723 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSL--GSWNGGVL 797 (1169)
Q Consensus 723 vg~~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~--~~~i~~~d~q--~~~~~~il 797 (1169)
||+.||++||++|++ +|+.|++||++++++++|+|+ ....|.++|.+++.+|+.+ .+.|+++||| ++.+++|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~--~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN--RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE--CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc--hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEE
Confidence 799999999999999 999999999666789999998 3445667789999999998 5689999999 57889999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEe
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 837 (1169)
|+|+|.++.++....++|+|+|+|.+.+++|+|.||||||
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 9999999999874369999999999999999999999997
|
NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A .... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-19 Score=196.36 Aligned_cols=392 Identities=19% Similarity=0.261 Sum_probs=295.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 125 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 125 e~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
++-++.+|.+...|..+++-...+ .++++++.|++.+..+|.+...|..|+.-++ ...+++....+|.|+|..+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkv---- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKV---- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH----
Confidence 677889999999999999876555 9999999999999999999999999999999 7889999999999999743
Q ss_pred CCHHHHHHHHHHHHHhh-hH----HHHHHHHHHHHhc-chh-hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCC
Q 001060 205 LSFPLWDKYIEYEYMQQ-EW----SRVAMIYTRILEN-PIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277 (1169)
Q Consensus 205 ~s~~lw~~y~~~e~~~~-~~----~~a~~iY~r~L~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~ 277 (1169)
.+.+||..|+.|-.+.+ .. +...+.|+-++.. -++ .--.+|..|..|....+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve--------------------- 142 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE--------------------- 142 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc---------------------
Confidence 35789999999877642 22 2334445555543 111 12345666665522210
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHH
Q 001060 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 357 (1169)
Q Consensus 278 ~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~ 357 (1169)
. ..-|.+..+.+..++.|.++|..|+-. =-.
T Consensus 143 -a-----------------------------------------~gk~ee~QRI~~vRriYqral~tPm~n-------lEk 173 (656)
T KOG1914|consen 143 -A-----------------------------------------VGKYEENQRITAVRRIYQRALVTPMHN-------LEK 173 (656)
T ss_pred -c-----------------------------------------cccHHHHHHHHHHHHHHHHHhcCcccc-------HHH
Confidence 0 012344556777788899999744322 126
Q ss_pred HHHHHHHHHHHc-------------CChHHHHHHHHHHHHhc-------c-----------CCHHHHHHHHHHHHHcCC-
Q 001060 358 NWHNYLDFIERD-------------GDFNKVVKLYERCLIAC-------A-----------NYPEYWIRYVLCMEASGS- 405 (1169)
Q Consensus 358 ~W~~yl~~~~~~-------------gd~~~a~~lyeraL~~~-------~-----------~~~e~W~~~a~~l~~~g~- 405 (1169)
+|..|..|+..- .++..|+.+|+...-.. | ...++|.+++.+....+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 899999998533 34556777777654332 1 123689999997654331
Q ss_pred -----h--HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhcCCChHHHHH
Q 001060 406 -----M--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--------------IDGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 406 -----~--e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~--------------~~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
+ ....-+|+.++... .-++++|+.++.++...++ .+++.++|+++...+.-.+..+++
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l-~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYL-GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12335778888655 8899999999999988888 788999999985555566788899
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 465 KHANMERRLGN---LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 465 ~~a~~e~r~g~---~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
.+++++...-+ .+....+|++++.....+ ++ .+|++|+.+..+..| ++.||.||.+|.+..-..-.++..-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~---~t--Lv~~~~mn~irR~eG-lkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDID---LT--LVYCQYMNFIRRAEG-LKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccC---Cc--eehhHHHHHHHHhhh-HHHHHHHHHHHhhccCCcchhhHHH
Confidence 99999987766 899999999999987432 32 379999999998666 9999999999998766556777777
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 542 a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
+.+|.-+... -..+.++|+--|...++.+ +.-..|++|+...+|...++.+.+|..+.
T Consensus 407 A~mEy~cskD--~~~AfrIFeLGLkkf~d~p---------~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 407 ALMEYYCSKD--KETAFRIFELGLKKFGDSP---------EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhcCC--hhHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7777766432 3457899999999999887 58999999999999999999999999887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=224.76 Aligned_cols=254 Identities=19% Similarity=0.228 Sum_probs=229.6
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCChHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-----PEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-----~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
.|++.++ -+|+..-+|..|..|..+.++.++|+.+.+|||...... ..+|+.|..++..-|.-+...
T Consensus 1446 Dferlvr--------ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1446 DFERLVR--------SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred HHHHHHh--------cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 4777777 688899999999999999999999999999999886332 249999999988889888899
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++|+||++.+ +...+|..+..++++.+.+++|-++|+..+.+ .-....+|++|++++.++++-++|+.++.+||...
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 9999999977 45679999999999999999999999997444 44789999999999999999999999999999999
Q ss_pred hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001060 491 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 491 ~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
|.++| -.+...+|.++++ .|+.+++|.+|+..|...|...++|..|+++|..+++ .+.+|.+|||++...
T Consensus 1595 Pk~eH----v~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~lfeRvi~l~-- 1664 (1710)
T KOG1070|consen 1595 PKQEH----VEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRDLFERVIELK-- 1664 (1710)
T ss_pred chhhh----HHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHHHHHHHHhcC--
Confidence 86544 5678899999998 9999999999999999999999999999999999988 667999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 571 SPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 571 ~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++..++..++..||+||+.+||.+.+..|..|+.+++...
T Consensus 1665 ----l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1665 ----LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred ----CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999998654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-16 Score=204.49 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+.++.. ++..+|+..|.+++.+ .|... ....++..+...|++++|+..|++++...+. ...|+.++..+
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--------~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~al 552 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--------QPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTA 552 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--------CCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence 344444 6778899999999873 33322 2333445556899999999999998766444 56789999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 480 (1169)
...|++++|..+|+++++.. |....++..++......|++++|+..|+++ ++++|+ ..+|..++.++.++|++++|+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l~P~-~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRS-LNIAPS-ANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999877 666666666666566779999999999998 789997 899999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHH
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
..|++++...|+ .+.++..++.++.. .|++++|+.+|+++++..|++..++..++......|+ .+.+..+
T Consensus 630 ~~l~~AL~l~Pd------~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~~ 699 (987)
T PRK09782 630 SDLRAALELEPN------NSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQHY 699 (987)
T ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 999999999864 36789999988887 9999999999999999999999999999999999888 6778999
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 561 VDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 561 ~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
|++++...|++. .|...+.+.+....+...+.+.+.|+..+-+..
T Consensus 700 l~~Al~l~P~~a---------~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 700 ARLVIDDIDNQA---------LITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHhcCCCCc---------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999888765 366777777777778888888888887776653
|
|
| >KOG4353 consensus RNA export factor NXT1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-20 Score=169.47 Aligned_cols=113 Identities=26% Similarity=0.449 Sum_probs=100.4
Q ss_pred hHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCCC------ce
Q 001060 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNG------GV 796 (1169)
Q Consensus 723 vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~~------~i 796 (1169)
-+.+||+.||..|+++|..|.+||.++|.++ |+|+.+.|.+. |.+++.-||.++++|.++||||.+++ +|
T Consensus 15 ~A~eFv~~YY~smD~rR~~i~rlY~~~atlv-WNGn~v~g~es---ls~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~v 90 (139)
T KOG4353|consen 15 AAEEFVNVYYSSMDKRRRGIGRLYLDNATLV-WNGNPVSGTES---LSEFFNMLPSSEFQINDLDCQPVHDQATGSQTTV 90 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccceEE-EcCCcchhHHH---HHHHHHhCCCccccccccccccchhhcccccceE
Confidence 4789999999999999999999999997665 89997776654 57788889999999999999987653 69
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeCCeEE----EEcceEEeccC
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYF----VLNDIFHFLDE 840 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~----v~nDifr~~~~ 840 (1169)
||+|+|.++++|+ ..|.|.|||.|..+...|- |..|||||.|.
T Consensus 91 LvvvsGtVkFdG~-k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 91 LVVVSGTVKFDGN-KQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred EEEEeeeEEEcCC-ccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 9999999999997 7999999999999987666 99999999874
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-15 Score=184.15 Aligned_cols=432 Identities=10% Similarity=-0.045 Sum_probs=301.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhCCHHHHH
Q 001060 78 VPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKY--ADHEARVGSMDKVV 155 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~--a~~e~~~~~~e~A~ 155 (1169)
.+....+++.|.++++.+|.+..+...|+.++-.. |+.++|+.++++++ .|.+..+...+ +.++...|++++|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45577999999999999999954444777777664 59999999999999 55555555555 77999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
++|+++++..|.+.+++...+..+. ..++.++|++.+++++...|... .+...+.+....++..+|...|+++++
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~----~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQ----NYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchH----HHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999999999998877777 77999999999999998666521 122223333335566569999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 236 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
..+.+.+.++..+..+...... ..+.. +...-.+.+. ..+..+-
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~------~~a~~----l~~~~p~~f~--------------------------~~~~~~l 241 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIV------EPALR----LAKENPNLVS--------------------------AEHYRQL 241 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCc------HHHHH----HHHhCccccC--------------------------HHHHHHH
Confidence 9777666666666554332211 11111 1111111111 1111100
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHhhccCCcccCCCChhc----HHHHHHHHHHHHHcCChHHHHHHHH
Q 001060 316 YIAVREEMY-----------KKAKEFDSKIIGFETAIRRPYFHVKPLSVTE----LENWHNYLDFIERDGDFNKVVKLYE 380 (1169)
Q Consensus 316 ~i~~~~~~y-----------~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~----~~~W~~yl~~~~~~gd~~~a~~lye 380 (1169)
-.......- ..-...+.++..++..+.+ .+ ..|.. ...-..++-.+...+++.+|+..|+
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~----~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR----WG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh----cc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 000000000 0001345566667776653 11 22222 2222233444467799999999999
Q ss_pred HHHHhc---cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 381 RCLIAC---ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 381 raL~~~---~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
...... |.| +-..+|..+...++.++|..+|..++.-.++ ........+...+...+++++|..+++++
T Consensus 317 ~l~~~~~~~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~- 393 (822)
T PRK14574 317 AMEAEGYKMPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY- 393 (822)
T ss_pred HhhhcCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH-
Confidence 987554 444 4445677788899999999999998874321 12221233344455789999999999987
Q ss_pred hh---------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001060 453 TE---------------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517 (1169)
Q Consensus 453 ~~---------------~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 517 (1169)
.+ -+|+..+.....+..+.-.|++.+|++++++.+...|.+ +.|++.+++++.. .|.+
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n------~~l~~~~A~v~~~-Rg~p 466 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN------QNLRIALASIYLA-RDLP 466 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCH
Confidence 33 244566677788888889999999999999999988654 7799999999887 9999
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 518 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 518 e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.+|+.+++.++.+.|++..+....+.-.+.+++ .+.++.+.+..+...|+++
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e---~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQE---WHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhCCCch
Confidence 999999999999999999888877777777665 6678888888888888776
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-16 Score=183.25 Aligned_cols=408 Identities=11% Similarity=0.104 Sum_probs=278.3
Q ss_pred CCCchHHHHHHHHHHhCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG----SMDK 153 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d-~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~----~~e~ 153 (1169)
+.+++++..|.++++.++++ .=..+.|++++.. .|+++.+..+|+++++..|+|...-+.++.++...+ ..++
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~--~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK--RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHH--hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 34778888888888888877 5666778887776 458888888888888888888888888887777664 5677
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 154 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY--LSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 154 A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~--~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
|..+..++++..|.+.+.|+..+.++. .+++-....+|.+|+...-... ....+-...+.+....|.+..|...|.
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e--~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLE--QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 888888888888888888888877765 4566666777777774321111 123344444455555677777777777
Q ss_pred HHHhc--chhh--------HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhh-CCCccchhhhccccccCCccccccC
Q 001060 232 RILEN--PIQQ--------LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAA-APSETGAEVKANEEEVQPDATEQTS 300 (1169)
Q Consensus 232 r~L~~--p~~~--------~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~e~~~ 300 (1169)
+++.. +..+ +..-|+.....+. +...+.|.. +|. .+.+ +|..++.
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~------l~~~~~A~e----~Yk~Ilke------------hp~YId~-- 532 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEE------LHDTEVAEE----MYKSILKE------------HPGYIDA-- 532 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHh------hhhhhHHHH----HHHHHHHH------------CchhHHH--
Confidence 77765 1111 1123333322211 111111111 110 0000 1111110
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001060 301 KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 380 (1169)
Q Consensus 301 ~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lye 380 (1169)
|+ .++.+-+......+++..+..++. .+..++.+|..++.|+....++..+.+-|+
T Consensus 533 ---------------yl-Rl~~ma~~k~~~~ea~~~lk~~l~--------~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 533 ---------------YL-RLGCMARDKNNLYEASLLLKDALN--------IDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred ---------------HH-HhhHHHHhccCcHHHHHHHHHHHh--------cccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 11 011223344567778888888887 788888999999999888877777777777
Q ss_pred HHHHhccCC--HHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 381 RCLIACANY--PEYWIRYVLCMEAS------------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 381 raL~~~~~~--~e~W~~~a~~l~~~------------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
+.+..--.. .-.-+.++.++... +..+.|+.+|.++++.+ |.+..+-.-.|.++-..|++.+|+.
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 777653333 33344445444331 23567788888888766 6666666667889999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+|.++ .+..-++..+|++++.++..+|+|-.|+..|+.++..+-.+ +.+.+...+++.++. .|.+.+|...+.+
T Consensus 668 IFsqV-rEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~----~~~~vl~~Lara~y~-~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 668 IFSQV-REATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK----NRSEVLHYLARAWYE-AGKLQEAKEALLK 741 (1018)
T ss_pred HHHHH-HHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 99997 55555678899999999999999999999999999987533 337788899999888 8889999999999
Q ss_pred HhhhcCCCHHHHHHHHHhH
Q 001060 527 SLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 527 Al~~~p~s~~l~~~~a~~E 545 (1169)
|+...|.+..+..+++...
T Consensus 742 a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 742 ARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHhCCccchHHhHHHHHH
Confidence 9999999998877655443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-15 Score=179.48 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC----HHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS----VDIWLH 174 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s----~~lw~~ 174 (1169)
+..++.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...+.. ...|..
T Consensus 35 ~~~~y~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 35 LSRDYFKGLNFLL--NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred ccHHHHHHHHHHh--cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3444444444443 4688889999999999999888888999999889999999999998888753222 245666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc
Q 001060 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~ 254 (1169)
++..+. ..|++++|+.+|+++++. ++.....+..++......|++++|..+|+++++..+.+....
T Consensus 113 La~~~~-~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 178 (389)
T PRK11788 113 LGQDYL-KAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------- 178 (389)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------
Confidence 677666 678888888888888874 333556677777777777888888888877765422110000
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 255 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 334 (1169)
Q Consensus 255 ~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai 334 (1169)
...+...+...|...+++++++
T Consensus 179 ----------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 179 ----------------------------------------------------------IAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHhCCCHHHHH
Confidence 0001111223344455555555
Q ss_pred HHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 001060 335 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-PEYWIRYVLCMEASGSMDLAHNAL 413 (1169)
Q Consensus 335 ~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-~e~W~~~a~~l~~~g~~e~A~~vl 413 (1169)
..|+++++ .++.....|..++..+...|++++|+.+|++++...|.+ ..+|..++..+...|++++|...+
T Consensus 201 ~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 201 ALLKKALA--------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHh--------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666555 334444555555555555666666666666666555443 344555555555566666666666
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 414 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 414 ~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+++++.. |+. .++..++.++.+.|++++|+.+|+++ ++..|++..+
T Consensus 273 ~~~~~~~-p~~-~~~~~la~~~~~~g~~~~A~~~l~~~-l~~~P~~~~~ 318 (389)
T PRK11788 273 RRALEEY-PGA-DLLLALAQLLEEQEGPEAAQALLREQ-LRRHPSLRGF 318 (389)
T ss_pred HHHHHhC-CCc-hHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCcCHHHH
Confidence 6665554 333 23355555566666666666666655 4445555433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-15 Score=176.29 Aligned_cols=309 Identities=15% Similarity=0.128 Sum_probs=210.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHH
Q 001060 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY-LSFPLWDKYIEY 216 (1169)
Q Consensus 138 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~-~s~~lw~~y~~~ 216 (1169)
++..+......|++++|+..|++++...|.+..+|...+.++. ..|++++|..++++++....... .....|..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~- 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ- 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-
Confidence 4444666778888999999999999988888888888888887 78888888888888876211100 00112222222
Q ss_pred HHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccc
Q 001060 217 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 296 (1169)
Q Consensus 217 e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (1169)
T Consensus 116 -------------------------------------------------------------------------------- 115 (389)
T PRK11788 116 -------------------------------------------------------------------------------- 115 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHH
Q 001060 297 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 376 (1169)
Q Consensus 297 e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~ 376 (1169)
+|...++++.|+..|+++++ .++.....+..++..+...|++++|+
T Consensus 116 --------------------------~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 116 --------------------------DYLKAGLLDRAEELFLQLVD--------EGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred --------------------------HHHHCCCHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHHhchHHHHH
Confidence 33344455555555555554 23444555666666666777777777
Q ss_pred HHHHHHHHhccCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 377 KLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 377 ~lyeraL~~~~~~~-----e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.+|++++...+... .+|..++..+...|++++|..+|+++++.. |+....++.++.++.+.|++++|..+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777776655432 256667777777888888888888888876 677778888888888888888888888887
Q ss_pred hhhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 452 HTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 452 ~~~~~P~~-~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
.+..|.+ ..++..++.++...|++++|...+++++...|+ ..++..++.++.+ .|++++|+.+|+++++.
T Consensus 241 -~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-------~~~~~~la~~~~~-~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 241 -EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG-------ADLLLALAQLLEE-QEGPEAAQALLREQLRR 311 (389)
T ss_pred -HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Confidence 5556665 356777788888888888888888888887653 1234667777666 88888888888888888
Q ss_pred cCCCHHHHHHHHHhHhh--CCC-hhHHHHHHHHHHHHhhcCCCCC
Q 001060 531 VQLSKPLLEALIHFESI--QSS-PKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 531 ~p~s~~l~~~~a~~E~~--~~~-~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.|++..+..-+..+... .+. .+.++.++..+++.+...|++.
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 88877555333222211 112 1234556667777777666643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-14 Score=167.13 Aligned_cols=361 Identities=17% Similarity=0.150 Sum_probs=244.6
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.+..+|+++|.++.+|..|+.+++.. |+++++....-.+-.+.|.+.++|+.++++-..+|+++.|+-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4577888999999999999999999999999985 59999998888888999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD-YL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d-~~-s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
.|+++..|.+..+...++.++. ..|+...|...|.+++...|.. +. ...+-..++.+....++-++|.+++..++..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999888 7899999999999999987721 11 1122223333344444446666666665542
Q ss_pred --chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 237 --PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 237 --p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
.....+.+
T Consensus 310 ~~~~~~~ed~---------------------------------------------------------------------- 319 (895)
T KOG2076|consen 310 EKDEASLEDL---------------------------------------------------------------------- 319 (895)
T ss_pred ccccccccHH----------------------------------------------------------------------
Confidence 00000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------cCCcccCCCChhcHHHHHHHHH-HHHHcCChH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIR--------------------RPYFHVKPLSVTELENWHNYLD-FIERDGDFN 373 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~--------------------r~~~~v~pl~~~~~~~W~~yl~-~~~~~gd~~ 373 (1169)
....++|.+.+.++.++....+... .+.+-+...-...+.+.+..+. +.++.....
T Consensus 320 ---ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~ 396 (895)
T KOG2076|consen 320 ---NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELL 396 (895)
T ss_pred ---HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchH
Confidence 1111222222222222222111111 0011111111223333122221 222223333
Q ss_pred HHHHHHHHHHHh---ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 374 KVVKLYERCLIA---CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 374 ~a~~lyeraL~~---~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
.++.. ...+. .....++++.++..|...|++.+|+..|..++....-++.-+|...|.++...|.+++|...|++
T Consensus 397 e~ll~--~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 397 EALLH--FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHH--HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33222 22222 23567899999999999999999999999998766456677999999999999999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHH
Q 001060 451 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 451 a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
+ +.+.|++.++.+.++.++.++|+.++|...++..+.-++. .+...-.--+..++..++.. .|+.++
T Consensus 475 v-l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~-~gk~E~ 544 (895)
T KOG2076|consen 475 V-LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ-VGKREE 544 (895)
T ss_pred H-HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH-hhhHHH
Confidence 8 7889999999999999999999999999998876632211 01111112245667777666 777665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-14 Score=167.38 Aligned_cols=445 Identities=14% Similarity=0.053 Sum_probs=289.0
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...+.-.|..+-+++-.+--.|+.-..++...+....+.|...|...+...|.|.-+.+--|.+....++|-.|..+|.+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34555666666666666666666555554443333356777777777777777777777777777777777777777777
Q ss_pred HHhccCCC-----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh---hhHHHHHHHHHH
Q 001060 161 AVQGVTYS-----VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ---QEWSRVAMIYTR 232 (1169)
Q Consensus 161 aL~~~P~s-----~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~---~~~~~a~~iY~r 232 (1169)
+|..+|.. +.+|+|+++ +++.+.|+..|+||++. |+.+......+..+.+.. ..++.+..++.+
T Consensus 190 al~inp~~~aD~rIgig~Cf~k-----l~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ 261 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWK-----LGMSEKALLAFERALQL---DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQR 261 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHh-----ccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 77777643 334544443 34577777777777773 334544555555544443 335666777777
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCccccCH-HHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001060 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTA-EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311 (1169)
Q Consensus 233 ~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 311 (1169)
+..+.+.+-..+-.....|--.......... +-+. .. + ......++
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai-------~~--------t------------------~~~~~~ae 308 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI-------KN--------T------------------ENKSIKAE 308 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH-------Hh--------h------------------hhhHHHHH
Confidence 7666333222221111111111000000000 0000 00 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~-~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~ 390 (1169)
.. |. ++..|...++|++|...|-.+++ .++.+ +-....+++.+...|+++.++..|++.+...|++.
T Consensus 309 s~--Y~--~gRs~Ha~Gd~ekA~~yY~~s~k--------~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 309 SF--YQ--LGRSYHAQGDFEKAFKYYMESLK--------ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HH--HH--HHHHHHhhccHHHHHHHHHHHHc--------cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 00 22 34578889999999999999988 45544 55566778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC----ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----cCCChHHH
Q 001060 391 EYWIRYVLCMEASG----SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE----TSPGLLEA 462 (1169)
Q Consensus 391 e~W~~~a~~l~~~g----~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~----~~P~~~~~ 462 (1169)
+.-.-++.++...+ ..+.|.+++.++++.. |.+.+.|+.++.+++...- -.++.+|.+|... -.+=-+++
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999887654 5688999999999987 8899999999999987554 4447777776211 12223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh---CCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK---GKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
..+.+.+..++|++++|+..|++|+.... +.+. ..+.-++-.++++++.. .++++.|-++|+..++.+|.-.+-+
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-LHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHCchhHHHH
Confidence 88899999999999999999999998722 1111 01222346778888776 8899999999999999998766555
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001060 539 EALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 593 (1169)
Q Consensus 539 ~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~ 593 (1169)
..+.-|....+. ...+..++..++..+..++ .+|..+.++...
T Consensus 534 lRl~~ma~~k~~---~~ea~~~lk~~l~~d~~np---------~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 534 LRLGCMARDKNN---LYEASLLLKDALNIDSSNP---------NARSLLGNLHLK 576 (1018)
T ss_pred HHhhHHHHhccC---cHHHHHHHHHHHhcccCCc---------HHHHHHHHHHHh
Confidence 555444443333 3456777888888877776 366666655443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=176.77 Aligned_cols=302 Identities=13% Similarity=0.087 Sum_probs=252.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 183 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~ 183 (1169)
.++..++.+.+=+-.+|..+|++.-...++.......++..+..+.+|++|+++|+.+-+..|.-++---.|-..+. +.
T Consensus 322 ~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-HL 400 (638)
T KOG1126|consen 322 GLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-HL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH-HH
Confidence 33444443333366789999999778888888777889999999999999999999999999977665555555544 32
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCH
Q 001060 184 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 263 (1169)
Q Consensus 184 ~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1169)
.+ +-+..++-+-| +.+++.+..-|...+.+..-+++.+.|+++|+|++++.+...- .|..
T Consensus 401 q~-~v~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-ayTL---------------- 460 (638)
T KOG1126|consen 401 QD-EVALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-AYTL---------------- 460 (638)
T ss_pred Hh-hHHHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-hhhh----------------
Confidence 22 22333443333 3477789999999999999999999999999999998553110 0110
Q ss_pred HHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001060 264 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 343 (1169)
Q Consensus 264 eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r 343 (1169)
++.-+..+++++.|...|+.+|+
T Consensus 461 --------------------------------------------------------lGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 461 --------------------------------------------------------LGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred --------------------------------------------------------cCChhhhhHHHHhHHHHHHhhhc-
Confidence 11123456778889999999999
Q ss_pred CCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc
Q 001060 344 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 423 (1169)
Q Consensus 344 ~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~ 423 (1169)
.++....+|.-++..+.++++++.|...|++|+..+|.+.-+-..++.++.+.|+.|+|+.+|++|+.+. |+
T Consensus 484 -------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 484 -------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred -------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++...+..+.++...+++++|+..++++ .++.|+...++..++.++.++|+.+.|...|.-|+.++|.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeL-k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEEL-KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHH-HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999997 8999999999999999999999999999999999999874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-14 Score=158.88 Aligned_cols=364 Identities=13% Similarity=0.146 Sum_probs=253.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH--HH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC--IF 178 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~--~~ 178 (1169)
..+..+.++.+ .+.+.+|+..|...+...|-+=..|..+.++... .+. ....+..-| +...|+.-. ..
T Consensus 166 llYL~Gvv~k~--~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~----~~~l~~~l~-~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 166 LLYLYGVVLKE--LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEI----LSILVVGLP-SDMHWMKKFFLKK 235 (559)
T ss_pred HHHHHHHHHHh--hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHH----HHHHHhcCc-ccchHHHHHHHHH
Confidence 33344555555 3689999999999999999998888888776532 222 222222222 224454321 11
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhcC
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL---DRYFSSFKEFAASR 255 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~---~~~~~~~~~~~~~~ 255 (1169)
........++++.-+++.+. +|.- .+.-|-..-+.....+.+++.|..+|+.+++..+..+ +.+=+.+ |+.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~-~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS-VGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 11233478888888888877 4432 1223333333344456789999999999999855433 3222221 11110
Q ss_pred CCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 335 (1169)
Q Consensus 256 ~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~ 335 (1169)
. ...+-++..++ .+.++..+ ..-.-++.|.-.++-+.|+.
T Consensus 312 ~-------skLs~LA~~v~-~idKyR~E--------------------------------TCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 312 K-------SKLSYLAQNVS-NIDKYRPE--------------------------------TCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred h-------HHHHHHHHHHH-HhccCCcc--------------------------------ceeeehhHHHHHHhHHHHHH
Confidence 0 00001111111 01111110 11112456777788899999
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
.|+++|+ ++|.-+.+|..++.=+.+.++...|+..|++|+..||.+...|+-+++.++-.+-..=|+-.|+|
T Consensus 352 YFkRALk--------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 352 YFKRALK--------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHh--------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999 99999999999998778899999999999999999999999999999999999988899999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--hCC
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE--KGK 493 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~--~~~ 493 (1169)
|++.- |+++.+|..+|.++++.+++++|.++|.++ +...-.+..++.+++.++.++++.++|-..|++.++.. -+.
T Consensus 424 A~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra-i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 424 ALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA-ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 99976 999999999999999999999999999998 66666677899999999999999999999999999843 111
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 494 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 494 ~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
..+..-..-+.++.++.+ .+++++|-....+++..
T Consensus 502 -~~~~t~ka~~fLA~~f~k-~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 502 -IDDETIKARLFLAEYFKK-MKDFDEASYYATLVLKG 536 (559)
T ss_pred -cchHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhcC
Confidence 112122234457777776 88899988776666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-13 Score=175.34 Aligned_cols=421 Identities=10% Similarity=0.057 Sum_probs=284.5
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFP--LCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P--~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
.+.......+...+. ...+..+...+.+ .|++.+|+++|+.+..... .+.-++..++..+.+.+..+.|..+|+.
T Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 355 NSLAAYNGGVSGKRK-SPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhHHHhccccCCCCC-chHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444444 3334444443444 3689999999999988653 3445556677888889999999999987
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ- 239 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~- 239 (1169)
+.. .+...|...+..+. ..++.+.|+++|+++++ .|..+ +...|...+....+.|+++.|..+|+++.+....
T Consensus 432 M~~---pd~~Tyn~LL~a~~-k~g~~e~A~~lf~~M~~-~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 432 IRN---PTLSTFNMLMSVCA-SSQDIDGALRVLRLVQE-AGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred cCC---CCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 765 46777877777776 78899999999999887 44332 4577888888888899999999999887653111
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
+. ..| ..
T Consensus 506 dv-vTy------------------------------------------------------------------------na 512 (1060)
T PLN03218 506 NV-HTF------------------------------------------------------------------------GA 512 (1060)
T ss_pred CH-HHH------------------------------------------------------------------------HH
Confidence 11 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccCCHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA---CANYPEYWIRY 396 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~---~~~~~e~W~~~ 396 (1169)
+...|.+.+++++|+..|++.... . + ..+...|..++..+.+.|++++|..+|++.... ...+...|..+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~---G---v-~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSK---N---V-KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHc---C---C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 123455666677777777776542 1 1 123567888888778888888888888887653 22345577777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCC
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
+..+.+.|++++|..+|++..+...+.+...|..+...+.+.|++++|+.+|++.... +.|+ ...|..++..+.+.|+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Confidence 7777788888888888888777654556677888888888888888888888876221 2443 5567777778888888
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh-cCCCHHHHHHHHHhHhhCCChhHH
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-VQLSKPLLEALIHFESIQSSPKQI 554 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~-~p~s~~l~~~~a~~E~~~~~~~~~ 554 (1169)
+++|..+|+.+++... ......|..++..+.+ .|++++|+++|++..+. ...+...|..++......+. +
T Consensus 665 ~eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k-~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~---~ 735 (1060)
T PLN03218 665 LDKAFEILQDARKQGI-----KLGTVSYSSLMGACSN-AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ---L 735 (1060)
T ss_pred HHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC---H
Confidence 8888888888776532 1123467777777666 88888888888877653 12245566666666666665 5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 555 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 555 ~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
+.+..+|+++...+-... ...|...+.-..+.|+++.+.++..++.+.
T Consensus 736 eeAlelf~eM~~~Gi~Pd--------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPN--------TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 667777777655432111 136677777777788888888888777665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-14 Score=156.45 Aligned_cols=437 Identities=12% Similarity=0.035 Sum_probs=285.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001060 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217 (1169)
Q Consensus 138 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e 217 (1169)
.+..+..+.+.++|++|++.|..++..+|+.+-++.+.+-.+. ..|+.+++.+---+||+..+. -......-..-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~-~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE-SLGDWEKVIEDCTKALELNPD---YVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH-HHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHHH
Confidence 4556778889999999999999999999987667777766666 789999988888888884432 222222222333
Q ss_pred HHhhhHHHHHHHHHHHHhc---chh----hHHHHHHHHHHHHhcC----CCccccCHHHHHHHHHHHhhCCCccchhhhc
Q 001060 218 YMQQEWSRVAMIYTRILEN---PIQ----QLDRYFSSFKEFAASR----PLSELRTAEEVDAAAVAVAAAPSETGAEVKA 286 (1169)
Q Consensus 218 ~~~~~~~~a~~iY~r~L~~---p~~----~~~~~~~~~~~~~~~~----~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~ 286 (1169)
+..|+++.|..=..-..-+ ... -.++..+......... +-...+..-..+. ..+..+..+
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~------syf~sF~~~--- 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA------SYFGSFHAD--- 264 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH------HHHhhcccc---
Confidence 3445555543211111111 000 1122222211110000 0001111111110 001111000
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCc---ccCCCChhc---HHHH
Q 001060 287 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK-AKEFDSKIIGFETAIRRPYF---HVKPLSVTE---LENW 359 (1169)
Q Consensus 287 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~-~~~~~~ai~~~e~al~r~~~---~v~pl~~~~---~~~W 359 (1169)
... ............+.+ .++.+|.. ...|+.+...+.+.+.- ++ +++.+|..- ....
T Consensus 265 ---------~~~--~~~~~~~ksDa~l~~---~l~~l~~~~~e~Y~~a~~~~te~~~~-~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 265 ---------PKP--LFDNKSDKSDAALAE---ALEALEKGLEEGYLKAYDKATEECLG-SESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred ---------ccc--cccCCCccchhhHHH---HHHHHHhhCchhHHHHHHHHHHHhhh-hhhhccccccchhHHHHHHHH
Confidence 000 000000001111111 11222222 12344444444443321 11 112122110 1222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
..-+.|..-.|+...+...|..++.+.+....++++++..|...++.++-.+.|.+|..+. |.++.+|+..+++..-.+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2234455567899999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001060 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
++++|..-|+++ +.++|++.-.+++++.+++|++.+++++..|+.++..+|. .|++|..++.+|.. .++++.
T Consensus 409 q~e~A~aDF~Ka-i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtD-qqqFd~ 480 (606)
T KOG0547|consen 409 QYEEAIADFQKA-ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTD-QQQFDK 480 (606)
T ss_pred HHHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhh-HHhHHH
Confidence 999999999998 8999999999999999999999999999999999999964 37899999999988 889999
Q ss_pred HHHHHHHHhhhcCC------CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001060 520 ARQILVDSLDHVQL------SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 593 (1169)
Q Consensus 520 Ar~i~~kAl~~~p~------s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~ 593 (1169)
|.+.|.+|+++.|. +...+..-+.+... . .++++.+..|+.++++..|.+. ........|+..
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-w-k~d~~~a~~Ll~KA~e~Dpkce---------~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-W-KEDINQAENLLRKAIELDPKCE---------QAYETLAQFELQ 549 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhc-h-hhhHHHHHHHHHHHHccCchHH---------HHHHHHHHHHHH
Confidence 99999999999998 55444333333222 1 1348889999999999876543 578888999999
Q ss_pred hCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhh
Q 001060 594 FGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627 (1169)
Q Consensus 594 ~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~ 627 (1169)
.|+++.+..+.++...+-.. +.++.++..
T Consensus 550 ~~~i~eAielFEksa~lArt-----~~E~~~a~s 578 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART-----ESEMVHAYS 578 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh-----HHHHHHHHH
Confidence 99999999999998877643 445554433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-14 Score=174.48 Aligned_cols=408 Identities=8% Similarity=-0.080 Sum_probs=284.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTAL--LEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L--~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
+..+.++..+++++ +|.+......+ +..+.. +|++++|+.+|+++++.+|++..++..++..+...++.++|++
T Consensus 82 G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~--~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 82 GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN--EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 56789999999999 55554555444 668777 4699999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
.+++++...|..... +..+.+.. ..++..+|++.|+++++.. +....++..|..-+...|-...|.++.++--..
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~~-~~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLNR-ATDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHHH-hcchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 999999999874433 44444443 3566666999999999954 446778888888888777777776655543222
Q ss_pred chhhHHHHHHHHHHHHhcC------CCccc---cCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCc
Q 001060 237 PIQQLDRYFSSFKEFAASR------PLSEL---RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 307 (1169)
Q Consensus 237 p~~~~~~~~~~~~~~~~~~------~~~~~---~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 307 (1169)
....+..+.....+.... +..+. ...+.+.+....++.. ....+
T Consensus 233 -f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~--------------------------~~~~p 285 (822)
T PRK14574 233 -VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR--------------------------WGKDP 285 (822)
T ss_pred -cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh--------------------------ccCCC
Confidence 111122222222221110 00000 0001111000000000 00011
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001060 308 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 387 (1169)
Q Consensus 308 ~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~ 387 (1169)
.....+.....-+.-.....+++.++|..|+.+-.- ..+--.-+-..+++.+...+.+++|..+|++++...+
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 111222223333334556778899999999876531 1111122445578888999999999999999988652
Q ss_pred ----CCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHhh--------------ccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 388 ----NYPEY--WIRYVLCMEASGSMDLAHNALARATHVFV--------------KRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 388 ----~~~e~--W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--------------p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
...++ ...+.-.+...+++++|..++++..+..+ |+...+..+.+..+.-.|++.+|.++
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22232 34444445678999999999999887432 12346777788888899999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
++++ ....|++..+++.+++++...|...+|+.+++.++.+.|.+ ..+....+..... ++++.+|..+..+.
T Consensus 439 le~l-~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~------~~~~~~~~~~al~-l~e~~~A~~~~~~l 510 (822)
T PRK14574 439 LEDL-SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS------LILERAQAETAMA-LQEWHQMELLTDDV 510 (822)
T ss_pred HHHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 9998 78899999999999999999999999999999999887642 4567777777666 89999999999999
Q ss_pred hhhcCCCHHH
Q 001060 528 LDHVQLSKPL 537 (1169)
Q Consensus 528 l~~~p~s~~l 537 (1169)
++.+|++...
T Consensus 511 ~~~~Pe~~~~ 520 (822)
T PRK14574 511 ISRSPEDIPS 520 (822)
T ss_pred HhhCCCchhH
Confidence 9999999843
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=184.43 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=104.0
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
+.+...|..++.++.+.|+.++|+..|+++|...|.+++++..++.++...|+.++++.++.+..... +.++.+|..+|
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la 221 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA 221 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 35577899999999999999999999999999999999999999999999999999999998888876 78899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
..+...|+.++|+..|+++ .+.+|+++.++..+++++...|+.++|..++++++..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~-~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKA-LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHH-HHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHhcccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998 7889999999999999999999999999999998865
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-14 Score=157.49 Aligned_cols=324 Identities=15% Similarity=0.148 Sum_probs=236.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHh
Q 001060 78 VPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA---------------------------QDNIVKIRRVYDAFLAE 130 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~---------------------------~~~i~~Ar~~ye~~l~~ 130 (1169)
.+..+.+++-|..+|..-|.+..+|..|.+++.... -...++++.-++..+..
T Consensus 177 ~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~ 256 (559)
T KOG1155|consen 177 LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSV 256 (559)
T ss_pred hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999999999988775421 01334455555666666
Q ss_pred -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC-HH
Q 001060 131 -FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS-FP 208 (1169)
Q Consensus 131 -~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s-~~ 208 (1169)
||.+.-+-...|.....+.++++|+.+|+..++..|+..+-.-.|.+.+. ..++..+.--+-+.........+.. ..
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY-v~~~~skLs~LA~~v~~idKyR~ETCCi 335 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY-VKNDKSKLSYLAQNVSNIDKYRPETCCI 335 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-HHhhhHHHHHHHHHHHHhccCCccceee
Confidence 67665555555556666677777777777777777776665555655554 2222222212222222211122221 22
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccc
Q 001060 209 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 288 (1169)
Q Consensus 209 lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~ 288 (1169)
|..-|. ..++.++|...|+|+|++.+.-+..+
T Consensus 336 IaNYYS----lr~eHEKAv~YFkRALkLNp~~~~aW-------------------------------------------- 367 (559)
T KOG1155|consen 336 IANYYS----LRSEHEKAVMYFKRALKLNPKYLSAW-------------------------------------------- 367 (559)
T ss_pred ehhHHH----HHHhHHHHHHHHHHHHhcCcchhHHH--------------------------------------------
Confidence 322222 25677888888888887754422111
Q ss_pred cccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH
Q 001060 289 EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER 368 (1169)
Q Consensus 289 ~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~ 368 (1169)
...+.-|.+.+.-..||..|++||+ ++|.+..+|..+++.++-
T Consensus 368 -----------------------------TLmGHEyvEmKNt~AAi~sYRrAvd--------i~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 368 -----------------------------TLMGHEYVEMKNTHAAIESYRRAVD--------INPRDYRAWYGLGQAYEI 410 (559)
T ss_pred -----------------------------HHhhHHHHHhcccHHHHHHHHHHHh--------cCchhHHHHhhhhHHHHH
Confidence 1123346666777889999999999 899999999999999999
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
.+-+.=++..|++++.+-|++..+|..++.++++.++.++|+++|.||+... .....++..+|+++++.++.++|...|
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999865 556789999999999999999999999
Q ss_pred HHHhhh-------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001060 449 QLVHTE-------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 449 ~~a~~~-------~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
++- ++ ..|+...+...++..+.+.+++++|.....+++..
T Consensus 490 ek~-v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 490 EKY-VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHH-HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 986 33 56667777777999999999999988776666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=183.85 Aligned_cols=217 Identities=18% Similarity=0.286 Sum_probs=168.0
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001060 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL--SFPLWDKYIEYEYMQQEWSRVAMIYTR 232 (1169)
Q Consensus 155 ~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~--s~~lw~~y~~~e~~~~~~~~a~~iY~r 232 (1169)
.+=|+|.|..+|++.-+|+.|..|.+ ..++.++||++++|||..+...-. -..||..|+++|...|.-+.+.++|.|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34588899999999999999999999 789999999999999987743322 357899999988888766667777777
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHH
Q 001060 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 312 (1169)
Q Consensus 233 ~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 312 (1169)
+.+.- +.
T Consensus 1523 Acqyc--------d~----------------------------------------------------------------- 1529 (1710)
T KOG1070|consen 1523 ACQYC--------DA----------------------------------------------------------------- 1529 (1710)
T ss_pred HHHhc--------ch-----------------------------------------------------------------
Confidence 64320 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH
Q 001060 313 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 392 (1169)
Q Consensus 313 ~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~ 392 (1169)
+..+..++.+|++.+.++.|..+|++.++.+.....+
T Consensus 1530 -------------------------------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v 1566 (1710)
T KOG1070|consen 1530 -------------------------------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV 1566 (1710)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH
Confidence 1123344455566666677777777777777777888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
|++|+.+|.++++-+.|+.++.||++.. |+ +..+.-..|+++.++|+-+.+|.+|+-. +..+|.-.++|+-|++++
T Consensus 1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl-l~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGL-LSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHH-HhhCccchhHHHHHHHHH
Confidence 8888888888888888888888888866 54 5666667888888888888888888886 556888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001060 471 RRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~ 490 (1169)
.++|+.+.+|.+|+|+|.+.
T Consensus 1645 ik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1645 IKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HccCCHHHHHHHHHHHHhcC
Confidence 88888888888888888865
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-12 Score=169.47 Aligned_cols=408 Identities=10% Similarity=0.066 Sum_probs=288.9
Q ss_pred CCCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSS--DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~--d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
+.+..+++.|+...+.+.. +.-.+..++..+.+ .+.+..|..+|+.+.. | +...|..++..+.+.++++.|.+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHH
Confidence 3456677777777776643 33344456676666 3589999999988865 6 46789999999999999999999
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 157 VYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 157 l~eraL~~~-P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
+|+++++.- ..+...|..++..+. ..|+.+.|+++|+++.. .|..+ +...|...|..+.+.|++++|..+|.++..
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~-k~G~vd~A~~vf~eM~~-~Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCA-KSGKVDAMFEVFHEMVN-AGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999998753 347788888888888 78999999999999987 34332 457899999999999999999999999987
Q ss_pred cchh-hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 236 NPIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 236 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
.... +...+......+.... ..+++..+...+... ..+ .. .+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G------~~deA~~lf~eM~~~---~~g--------i~---------------PD~v--- 580 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSG------AVDRAFDVLAEMKAE---THP--------ID---------------PDHI--- 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHh---cCC--------CC---------------CcHH---
Confidence 5211 1122222222222221 113332211111000 000 00 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cCCHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYPEYW 393 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~~~~e~W 393 (1169)
....+...|-+.+++++|++.|+++.++ . -+.+...|..++..+.+.|++++|+.+|++..... .-+...|
T Consensus 581 -TynaLI~ay~k~G~ldeA~elf~~M~e~---g----i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 581 -TVGALMKACANAGQVDRAKEVYQMIHEY---N----IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHc---C----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2233445688889999999999998873 1 13456789999999899999999999999988662 3346688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHHHHH
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~~e~r 472 (1169)
..++..+.+.|++++|..+|++..+...+-+..+|..+...+.+.|++++|+.+|++... .+.| +...|..++..+.+
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k 731 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence 888888888999999999999988765555778888889999999999999999998621 2345 45679999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc-CCCHHHHHHHHHh
Q 001060 473 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHF 544 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~-p~s~~l~~~~a~~ 544 (1169)
.|++++|..+|++.....- .++ ...|..++..+.+ .|++++|+++|..+++.. ..+...+..++.+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi----~Pd-~~Ty~sLL~a~~k-~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGL----CPN-TITYSILLVASER-KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999998876431 122 3456666666555 889999999999998853 2234445444433
|
|
| >PLN03134 glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=154.78 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++|||+|||+++|+++|+++|++||.|+++.| +.++.+++++|||||+|++.++|++||+. +++.|+|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4579999999999999999999999999999875 56778999999999999999999999975 899999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-13 Score=160.84 Aligned_cols=340 Identities=13% Similarity=0.124 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
......+..+-. .|++++|.+++..++.++|.++..|.-++.++..+|+.+++...+--+--+.|.+.++|+.++.+.
T Consensus 140 ~~ll~eAN~lfa--rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFA--RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334444444444 479999999999999999999999999999999999999999999888888899999999999998
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhcCCCc
Q 001060 180 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFKEFAASRPLS 258 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p~~~~~~~~~~~~~~~~~~~~~ 258 (1169)
. ..|+++.|+-+|.|||+..|.+ ..+...+..+..+.|...+|...|.+++.. |+.+++.+-..
T Consensus 218 ~-~~~~i~qA~~cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~----------- 282 (895)
T KOG2076|consen 218 E-QLGNINQARYCYSRAIQANPSN---WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL----------- 282 (895)
T ss_pred H-hcccHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH-----------
Confidence 8 8999999999999999976664 566667777888889999999999999987 53322222111
Q ss_pred cccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 338 (1169)
Q Consensus 259 ~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e 338 (1169)
+-.....|...++-+.|+..++
T Consensus 283 ----------------------------------------------------------i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 283 ----------------------------------------------------------IRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhhHHHHHHHHHH
Confidence 0011123444444466666677
Q ss_pred HhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------hcc----CCHHH
Q 001060 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI----------------------ACA----NYPEY 392 (1169)
Q Consensus 339 ~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~----------------------~~~----~~~e~ 392 (1169)
.++.. -.+....+...-|+..+.+...++++......--. .|+ ...++
T Consensus 305 ~~~s~------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 305 GALSK------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHhh------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 66651 11222233344455555555555554333222111 111 11122
Q ss_pred H-HHHHHHHHHcCChHHHHHHHHHHHHHh--hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-ChHHHHHHHHH
Q 001060 393 W-IRYVLCMEASGSMDLAHNALARATHVF--VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-GLLEAIIKHAN 468 (1169)
Q Consensus 393 W-~~~a~~l~~~g~~e~A~~vl~rAl~~~--~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P-~~~~~~~~~a~ 468 (1169)
- ++...++...+..+....++...+... +.+.+.+++..++.+...|++.+|+.+|..+ ....+ .+..+|++++.
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI-TNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCccccchhhhHHHHH
Confidence 2 255555555444443333333333322 3467889999999999999999999999997 33222 34669999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
++..+|.+++|...|+++|...|.+ -.+.+.++.++.+ .|+.++|.++++...
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~------~D~Ri~Lasl~~~-~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDN------LDARITLASLYQQ-LGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCc------hhhhhhHHHHHHh-cCCHHHHHHHHhccc
Confidence 9999999999999999999998754 3467788888776 999999999988765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-13 Score=172.97 Aligned_cols=433 Identities=11% Similarity=0.071 Sum_probs=320.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHY 175 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~y 175 (1169)
...|..++..+.. .++..+|..+|+.+.... ..+...|..++..+.+.++++.+..++..+++.- ..++.++..+
T Consensus 87 ~~~~~~~i~~l~~--~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVA--CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3478888887776 469999999999998754 3456778999999999999999999999887642 3467888888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhc
Q 001060 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ-QLDRYFSSFKEFAAS 254 (1169)
Q Consensus 176 ~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~-~~~~~~~~~~~~~~~ 254 (1169)
+..+. ..|+.+.|+++|++..+ . +...|...+.-+...|++++|..+|+++++.... +...+-.....+...
T Consensus 165 i~~y~-k~g~~~~A~~lf~~m~~---~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHV-KCGMLIDARRLFDEMPE---R---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHh-cCCCHHHHHHHHhcCCC---C---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 88887 78999999999998754 2 3456888888888899999999999999875221 111111111111111
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 255 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 334 (1169)
Q Consensus 255 ~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai 334 (1169)
.. .+.+.++...+. +.. . .+ +. .+...+...|.+.+++++|+
T Consensus 238 ~~------~~~~~~l~~~~~----~~g-----~----~~-------d~------------~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 238 GS------ARAGQQLHCCVL----KTG-----V----VG-------DT------------FVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred Cc------HHHHHHHHHHHH----HhC-----C----Cc-------cc------------eeHHHHHHHHHHCCCHHHHH
Confidence 10 011111000000 000 0 00 00 02344567889999999999
Q ss_pred HHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001060 335 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNAL 413 (1169)
Q Consensus 335 ~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~-~~~~~e~W~~~a~~l~~~g~~e~A~~vl 413 (1169)
..|++... .+...|..++..+.+.|+.++|+.+|++.... ..-+...+..++..+.+.|++++|..++
T Consensus 280 ~vf~~m~~-----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 280 CVFDGMPE-----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHHhCCC-----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99987643 34678999999999999999999999998765 3445678888888889999999999999
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 414 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 414 ~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
..+++...+.+..++..+...+.+.|++++|+.+|++. . .| +...|..++..+.+.|+.++|..+|++.+....
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~--~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-- 422 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-P--RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-- 422 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-C--CC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence 99998766667788999999999999999999999986 3 23 567899999999999999999999999887542
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC--CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001060 494 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 494 ~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~--s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~ 571 (1169)
.|+ ...|..++..+.+ .|.+++|+++|+...+..+. +...|..++.+....|. ++.+.++|+++.. .|+
T Consensus 423 --~Pd-~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~~~-~p~- 493 (697)
T PLN03081 423 --APN-HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL---LDEAYAMIRRAPF-KPT- 493 (697)
T ss_pred --CCC-HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC---HHHHHHHHHHCCC-CCC-
Confidence 122 3456666666666 99999999999999874322 33456667777777776 6667777776421 111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 572 PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 572 ~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
..+|...+.-...+|+.+..+++.++..++.+.
T Consensus 494 ---------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 494 ---------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred ---------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 247999999999999999999999988777664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-13 Score=171.97 Aligned_cols=446 Identities=11% Similarity=0.030 Sum_probs=327.8
Q ss_pred CCCchHHHHHHHHHHhCC--CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHH
Q 001060 79 PAMSGEEDRLWNIVKANS--SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGSMDKV 154 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP--~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~~e~A 154 (1169)
+.+..+++.|+.+....+ -|...|..|+..+... +++..++.++..++.. .| +...|..++..+.+.|++++|
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHH
Confidence 345677888887776543 4778899999988875 5899999999998863 45 578899999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 155 ~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
+++|+++.. .++..|...+..+. ..|++++|.++|++++. .|..+. ...+...+......+....+..++..++
T Consensus 178 ~~lf~~m~~---~~~~t~n~li~~~~-~~g~~~~A~~lf~~M~~-~g~~p~-~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 178 RRLFDEMPE---RNLASWGTIIGGLV-DAGNYREAFALFREMWE-DGSDAE-PRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHhcCCC---CCeeeHHHHHHHHH-HCcCHHHHHHHHHHHHH-hCCCCC-hhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999865 36778888888877 78999999999999987 444432 2345555555555678888888888877
Q ss_pred hcchhh----HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001060 235 ENPIQQ----LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 310 (1169)
Q Consensus 235 ~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 310 (1169)
+..... +..+...|.+ .. ..++|.. ++..+.+. +.
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k---~g------~~~~A~~----vf~~m~~~----------------------------~~ 290 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSK---CG------DIEDARC----VFDGMPEK----------------------------TT 290 (697)
T ss_pred HhCCCccceeHHHHHHHHHH---CC------CHHHHHH----HHHhCCCC----------------------------Ch
Confidence 752211 1122222221 11 1133321 12111100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cCC
Q 001060 311 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANY 389 (1169)
Q Consensus 311 ~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~~~ 389 (1169)
. ....+...|.+.++.++|+..|++..+. .+ ..+...+..++..+.+.|+++++..+++.++... +.+
T Consensus 291 v----t~n~li~~y~~~g~~~eA~~lf~~M~~~---g~----~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 291 V----AWNSMLAGYALHGYSEEALCLYYEMRDS---GV----SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred h----HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC----CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 1 2233456788899999999999988652 11 1234578888888889999999999999999874 667
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHAN 468 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~ 468 (1169)
..++..++..|.+.|++++|..+|++..+ .+...|..+...+.++|+.++|.++|++... .+.|+ ...+..++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~ 434 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLS 434 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHH
Confidence 78999999999999999999999988653 4667899999999999999999999999632 24564 456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
.+.+.|..++|..+|+...+...-. ++ ...|..+++.+.+ .|++++|.+++++.- ..| +...|..++.--..+
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~---p~-~~~y~~li~~l~r-~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIK---PR-AMHYACMIELLGR-EGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCC---CC-ccchHhHHHHHHh-cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHc
Confidence 8889999999999999998643211 11 2357778888777 999999999998753 333 456788777777666
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001060 549 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 609 (1169)
Q Consensus 549 ~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~ 609 (1169)
++ ++.++.++++.+...|++.. .+...++.....|..+.+.++.+++.+
T Consensus 508 g~---~~~a~~~~~~l~~~~p~~~~---------~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 508 KN---LELGRLAAEKLYGMGPEKLN---------NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CC---cHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66 67788889998887776542 466777788888999999888877643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-13 Score=178.67 Aligned_cols=444 Identities=9% Similarity=0.024 Sum_probs=312.1
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
++.+...|+.... .|.-.|..|+..+-+. |+.++|..+|++++.. .|+. -.+..++..+.+.++.+.+++++
T Consensus 238 ~~~A~~lf~~m~~---~d~~s~n~li~~~~~~--g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 238 VVSARLVFDRMPR---RDCISWNAMISGYFEN--GECLEGLELFFTMRELSVDPDL-MTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HHHHHHHHhcCCC---CCcchhHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Confidence 3344444444322 2445666666666653 4666677777666553 4443 33455556666666777777766
Q ss_pred HHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Q 001060 159 ERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN- 236 (1169)
Q Consensus 159 eraL~~~-P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~- 236 (1169)
..+++.- ..+..+|..++..+. ..|+.++|+++|++... . +...|...+.-+.+.|++++|..+|+++...
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~---~---d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEKVFSRMET---K---DAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHHHHhhCCC---C---CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 6665532 346788888888888 78999999999998653 2 3356888998888899999999999998765
Q ss_pred --chh-hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHH
Q 001060 237 --PIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL 313 (1169)
Q Consensus 237 --p~~-~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 313 (1169)
|.. .+..+...+. ... ..+++.++ +....+... . .+
T Consensus 385 ~~Pd~~t~~~ll~a~~---~~g------~~~~a~~l----~~~~~~~g~-----~-------------------~~---- 423 (857)
T PLN03077 385 VSPDEITIASVLSACA---CLG------DLDVGVKL----HELAERKGL-----I-------------------SY---- 423 (857)
T ss_pred CCCCceeHHHHHHHHh---ccc------hHHHHHHH----HHHHHHhCC-----C-------------------cc----
Confidence 222 1222222221 111 11222111 110000000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W 393 (1169)
......+...|.+.+++++|+..|++..+ .+...|..++..+.+.|+.++|+.+|++.+....-+...+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~ 492 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTL 492 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHH
Confidence 01334456788999999999999998644 2356799999999999999999999999987766677778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
..+...+.+.|+++.+..++..+++.-...+..++..+...+.+.|++++|+.+|+.. +.+...|..++..+.+.
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAH 567 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHc
Confidence 8888888889999999999999888665556677778888999999999999999874 44678899999999999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC--CHHHHHHHHHhHhhCCCh
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~--s~~l~~~~a~~E~~~~~~ 551 (1169)
|+.++|..+|++.++.... |+ ...|..+...+.+ .|.+++|+++|+...+..+. +...|..++.+....|.
T Consensus 568 G~~~~A~~lf~~M~~~g~~----Pd-~~T~~~ll~a~~~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~- 640 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVN----PD-EVTFISLLCACSR-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK- 640 (857)
T ss_pred CCHHHHHHHHHHHHHcCCC----CC-cccHHHHHHHHhh-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-
Confidence 9999999999998875321 22 1235555555455 89999999999999854332 34566677777777776
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 552 KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 552 ~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++.+..++++.- ..|+ ..+|..++.-...+|+++..+.+.++..++.|..
T Consensus 641 --~~eA~~~~~~m~-~~pd----------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 641 --LTEAYNFINKMP-ITPD----------PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred --HHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 666788888752 1222 2589999999999999999999999999887763
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-17 Score=155.93 Aligned_cols=130 Identities=34% Similarity=0.477 Sum_probs=96.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++.+.+|+++|.+||.|..|++ +++. ...+||||+|+++.+|+.||.. +|..++|.+|+||+.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 489999999999999999999999999999664 3332 2568999999999999999988 8999999999999998
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC--------C-CCCCCCCCCCCCCCCCCCCCCCC
Q 001060 1112 PNTGSTSRGG-RRGRGRGSYQTDAPRGRFGGR--------G-LGRGSAQDGGDYNRSRGNGFYQR 1166 (1169)
Q Consensus 1112 ~~~~~~~rg~-~~g~grg~~~~~~~~g~~ggr--------g-~grg~~~~~g~~~r~~g~g~~~~ 1166 (1169)
.-+.++.++| .+|+||||.++++.+|.-.-| | ...++|++.+++||..|..+|..
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfad 146 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFAD 146 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeee
Confidence 7654443333 333444432222111111011 2 24678999999999999998853
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=177.77 Aligned_cols=270 Identities=18% Similarity=0.221 Sum_probs=114.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001060 93 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 93 ~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 170 (1169)
+..|. +....++.++-. .|++++|.+++++.+... |++..||..++++....++++.|+..|++++...+.++.
T Consensus 4 ~~~~~--~~~l~~A~~~~~--~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~ 79 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQ--RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455 445577777776 469999999997776554 899999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 250 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~ 250 (1169)
....++.+ . ..+++++|..+++++.+..+ +..+|..++......++++++..++.++...+...
T Consensus 80 ~~~~l~~l-~-~~~~~~~A~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 143 (280)
T PF13429_consen 80 DYERLIQL-L-QDGDPEEALKLAEKAYERDG----DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP---------- 143 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------------
T ss_pred cccccccc-c-cccccccccccccccccccc----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC----------
Confidence 88888888 4 67899999999998887432 45678888888888899999988887765322100
Q ss_pred HHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 001060 251 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 330 (1169)
Q Consensus 251 ~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~ 330 (1169)
.-..++..+..+|.+.++.
T Consensus 144 -------------------------------------------------------------~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 144 -------------------------------------------------------------DSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -------------------------------------------------------------T-HHHHHHHHHHHHHCCHH
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHcCCH
Confidence 0001444556778889999
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++|+..|+++|+ ++|.+..++..++.++...|+.++++.++++.....+.++.+|..++..+...|+.++|+
T Consensus 163 ~~A~~~~~~al~--------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 163 DKALRDYRKALE--------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHHHHHHHHHH--------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 999999999999 788889999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
..|++++... |+++.++..+|.++...|+.++|..++.+++
T Consensus 235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccc
Confidence 9999999977 8999999999999999999999999999874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-16 Score=173.31 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHH
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 540 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~ 540 (1169)
-+|+.|+.+.+|.+.++.||.+|++|+... .....+|+.+|.+++...++.+.|++||+++++.+|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 379999999999999999999999998543 23367999999999996778888999999999999999999999
Q ss_pred HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchh
Q 001060 541 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAE-REELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSE 619 (1169)
Q Consensus 541 ~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~-~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~ 619 (1169)
|+.|+..+++ ++.+|.+|||++... +.+. ...||.+|++||..|||++++.+|++|+.+++++..
T Consensus 76 Y~~~l~~~~d---~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~---- 141 (280)
T PF05843_consen 76 YLDFLIKLND---INNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN---- 141 (280)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-----
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh----
Confidence 9999999887 678999999999863 3344 788999999999999999999999999999998631
Q ss_pred hhhcchhhhhcchHHHhhhcCCCCCCC
Q 001060 620 LRKRHAEDFLASERAKMAKSYSGAPSP 646 (1169)
Q Consensus 620 ~~kr~~~~~~~~~~~k~~~~~~~~~~~ 646 (1169)
.....++||++.+++||+...
T Consensus 142 ------~~~~f~~ry~~~~~~~~~~~~ 162 (280)
T PF05843_consen 142 ------SLELFSDRYSFLDLNPISPRE 162 (280)
T ss_dssp ------HHHHHHCCT-BTTB-CCHHCC
T ss_pred ------HHHHHHHHhhccccCcccHHh
Confidence 233467899999999998653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-12 Score=143.79 Aligned_cols=437 Identities=15% Similarity=0.123 Sum_probs=239.7
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVYERA 161 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~era 161 (1169)
.-...++.++...+.|...|..++.++.+. +.+.+..++|.++|..+|+++++|+.-|.++...+. ++.|+.+|.|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 446778899999999999999999999985 369999999999999999999999999999997764 99999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH-----------HHHHHhcCCCCCCHHHHHHHHHHHHH--h-hhHHHHH
Q 001060 162 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLF-----------ERGLAYVGTDYLSFPLWDKYIEYEYM--Q-QEWSRVA 227 (1169)
Q Consensus 162 L~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~-----------erAl~~~g~d~~s~~lw~~y~~~e~~--~-~~~~~a~ 227 (1169)
|+.+|++++||++|.++++........-++.+ +++....-.-..+... ..+...+.. . ...+.+-
T Consensus 167 LR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~-~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDI-IKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhh-hhcchhhcchHHHHHHHHHH
Confidence 99999999999999999884322221111111 1111100000000000 000000000 0 0011111
Q ss_pred HHHHHHH----h----cchhh--H-HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccc
Q 001060 228 MIYTRIL----E----NPIQQ--L-DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 296 (1169)
Q Consensus 228 ~iY~r~L----~----~p~~~--~-~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (1169)
++=++++ . .|..- + .+.++.+......+..+.- ...+. ...+..- ....+
T Consensus 246 el~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~-~~~~~---------~~k~s~~-~~v~e-------- 306 (568)
T KOG2396|consen 246 ELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQA-KAVEV---------GSKESRC-CAVYE-------- 306 (568)
T ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhh-hchhc---------chhHHHH-HHHHH--------
Confidence 1111111 1 12211 1 1111111111111110000 00000 0000000 00000
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHH
Q 001060 297 EQTSKPVSAGLTEAEELEKYIAVREEMYKK--AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK 374 (1169)
Q Consensus 297 e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~--~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~ 374 (1169)
.....+.....|.-||..+.+.+.. .......+..|+.+.. .+.+.+.....+.....+..... .
T Consensus 307 -----e~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~-----~~~l~~~~~~~ys~~~l~~~t~~---~ 373 (568)
T KOG2396|consen 307 -----EAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHE-----LKLLSECLYKQYSVLLLCLNTLN---E 373 (568)
T ss_pred -----HHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----hcccccchHHHHHHHHHHHhccc---h
Confidence 0001112333444566666554432 2233344445565554 12233333333333333333222 2
Q ss_pred HHHHHHHH-HHhccCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC-HHHHH--HHHH
Q 001060 375 VVKLYERC-LIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGAR--AAYQ 449 (1169)
Q Consensus 375 a~~lyera-L~~~~~~~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~-~~~A~--~~~~ 449 (1169)
++.+-++. ......+..+|+.+...+... .+++--..-+--.++..+ ....+..|+..- .++ +...+ .++.
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~--~s~~~~~w~s~~--~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV--CSELLISWASAS--EGDSLQEDTLDLIIS 449 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh--cchhHHHHHHHh--hccchhHHHHHHHHH
Confidence 22222222 244578889999999887643 232221111111122121 233444444332 222 22222 2333
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHh
Q 001060 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV-SRNAEKARQILVDSL 528 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~-~g~~e~Ar~i~~kAl 528 (1169)
.++.-..++...+-..+..+..+.+.+.+|+.+|.+...+.|- .-.++-+...|+-.. .-++..+|++|+.|+
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~------sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPF------SLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 3334457777778888888999999999999999998888652 234666777666542 225899999999999
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 529 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 529 ~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..+..+..+|..|..+|..+|.++. +-.+|-||+..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en---~~~~~~ra~kt 559 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPEN---CGQIYWRAMKT 559 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCccc---ccHHHHHHHHh
Confidence 9999999999999999999998654 56678887664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=142.87 Aligned_cols=368 Identities=12% Similarity=0.013 Sum_probs=284.9
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHhCCHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK---YADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~---~a~~e~~~~~~e~A~~l~e 159 (1169)
.+.-++...|..-|--.+.-..|+....+. .+....--..+...|.....|+. ++.++.-...+.-+..++-
T Consensus 148 ~~vl~ykevvrecp~aL~~i~~ll~l~v~g-----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~l 222 (564)
T KOG1174|consen 148 EAVLAYKEVIRECPMALQVIEALLELGVNG-----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLML 222 (564)
T ss_pred HHHHhhhHHHHhcchHHHHHHHHHHHhhcc-----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHH
Confidence 556667777777777666666666554431 12233334556667777666642 3333333344566677788
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
.-+...|.|++|....++++. ..|+.+++.-.|+++.. .|+....-.+.|..++-..|+.++.-.+-.+++.+...
T Consensus 223 e~~~~lr~NvhLl~~lak~~~-~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ 298 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLY-YNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY 298 (564)
T ss_pred HhhccCCccHHHHHHHhhhhh-hhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc
Confidence 888889999999999999998 89999999999999988 45555566778888777778888776666665544322
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
.-..+|-..
T Consensus 299 ta~~wfV~~----------------------------------------------------------------------- 307 (564)
T KOG1174|consen 299 TASHWFVHA----------------------------------------------------------------------- 307 (564)
T ss_pred chhhhhhhh-----------------------------------------------------------------------
Confidence 222222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
...-..+++..|+..-+++|. +++.+.+.+...+..+...++.+.|+-.|+.+...-|...+++.-++..
T Consensus 308 --~~l~~~K~~~rAL~~~eK~I~--------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 308 --QLLYDEKKFERALNFVEKCID--------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred --hhhhhhhhHHHHHHHHHHHhc--------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 112234677778888889998 7888999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHH-HHH-HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAA-RFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a-~~~-e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
|...|++.+|.-.-..++..+ +.+....-..+ .+. ..-..-++|.++|++. +.++|++..+....+.+..+.|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~-L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS-LKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhh-hccCCccHHHHHHHHHHHHhhCccc
Confidence 999999999998888888877 77776666654 222 2233457899999998 8899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 550 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~ 550 (1169)
.+++++++++...++ -.|...+++++.. .+.+.+|...|..||.++|.+..-...+-.+|....+
T Consensus 456 D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A-~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPD-------VNLHNHLGDIMRA-QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hHHHHHHHHHhhccc-------cHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 999999999998864 2488999999776 8899999999999999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-12 Score=153.87 Aligned_cols=293 Identities=11% Similarity=-0.007 Sum_probs=194.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHH
Q 001060 112 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIR 190 (1169)
Q Consensus 112 ~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~y~~~~~~~~~~~e~Ar 190 (1169)
..+|+++.|++.+.++....|...-+++..+....+.|++++|.+.|+++++..|.+. .+...++.+.+ ..++++.|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHH
Confidence 3468999999999999999999888999999999999999999999999999888774 67777888888 789999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHH
Q 001060 191 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 270 (1169)
Q Consensus 191 ~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~ 270 (1169)
..+++.++..|. +..++..+.......|+++.+..++.+.++....+- ++..
T Consensus 174 ~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~----------------------~~~~--- 225 (409)
T TIGR00540 174 HGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD----------------------EEFA--- 225 (409)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH----------------------HHHH---
Confidence 999999995444 567888888888889999999998888875511100 0000
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p 350 (1169)
..+
T Consensus 226 -----------------------------------------------~l~------------------------------ 228 (409)
T TIGR00540 226 -----------------------------------------------DLE------------------------------ 228 (409)
T ss_pred -----------------------------------------------HHH------------------------------
Confidence 000
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA----NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~----~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
...|..+++- +..++....++++....| .++.+++.++..+...|++++|.++++++++.. |++..
T Consensus 229 -----~~a~~~~l~~----~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~ 298 (409)
T TIGR00540 229 -----QKAEIGLLDE----AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA 298 (409)
T ss_pred -----HHHHHHHHHH----HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCccc
Confidence 0011111100 000111122223333333 466677777776666677777777777777665 44432
Q ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhhCCCccCchH
Q 001060 427 IH--LFAARFKEQNGDIDGARAAYQLVHTETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQ--AIAIEKGKEHSQTLP 500 (1169)
Q Consensus 427 l~--~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~--~~~~~~a~~e~r~g~~e~A~~iy~~--Al~~~~~~~~~~~~~ 500 (1169)
.. ..........++.+.+++.++++ .+..|+++ .+...++.++.+.|++++|+..|++ +++..|+ +
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~-lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-------~ 370 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQ-AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-------A 370 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-------H
Confidence 21 11111122245666677777776 56677777 6677777777777777777777773 4444432 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
..+..++.++++ .|+.++|+++|++++.
T Consensus 371 ~~~~~La~ll~~-~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 371 NDLAMAADAFDQ-AGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 345567777666 7777777777777765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-12 Score=166.60 Aligned_cols=392 Identities=12% Similarity=0.065 Sum_probs=242.3
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLHY 175 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~y 175 (1169)
|...|..|+..+-+. |++++|+++|+++.. | +...|..++..+.+.|++++|.++|+++.... |+. ..+...
T Consensus 322 d~~~~n~Li~~y~k~--g~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~l 395 (857)
T PLN03077 322 DVSVCNSLIQMYLSL--GSWGEAEKVFSRMET--K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASV 395 (857)
T ss_pred chHHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHH
Confidence 455555555555553 366666666665532 2 23446666666666666666666666554322 322 222222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC
Q 001060 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 255 (1169)
Q Consensus 176 ~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~ 255 (1169)
+.... ..|+.+.++++++.+++ .|... ...+|...+..+.+.|+++.|+++|+++.+........+...| ....
T Consensus 396 l~a~~-~~g~~~~a~~l~~~~~~-~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~---~~~g 469 (857)
T PLN03077 396 LSACA-CLGDLDVGVKLHELAER-KGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL---RLNN 469 (857)
T ss_pred HHHHh-ccchHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH---HHCC
Confidence 23222 45556666666666655 22211 2345566666666666677777776665432211111111111 1111
Q ss_pred CCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 335 (1169)
Q Consensus 256 ~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~ 335 (1169)
..+++..+...+.. ...| +.. .+......+...+..+.+.+
T Consensus 470 ------~~~eA~~lf~~m~~--------------~~~p---------------d~~----t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 470 ------RCFEALIFFRQMLL--------------TLKP---------------NSV----TLIAALSACARIGALMCGKE 510 (857)
T ss_pred ------CHHHHHHHHHHHHh--------------CCCC---------------CHh----HHHHHHHHHhhhchHHHhHH
Confidence 11222221111100 0000 001 11111233455566677777
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
.+..+++.- -..+......+++.+.+.|++++|..+|+++ ..+...|..++..+.+.|+.++|..+|++
T Consensus 511 i~~~~~~~g-------~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 511 IHAHVLRTG-------IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHHHHHhC-------CCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777776631 1122345667889999999999999999986 56788999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH--TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~--~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
..+.-..-+...+..+...+.+.|.+++|+.+|+... ..+.| +...|..+++++.|.|++++|..++++. ...|
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-- 655 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-- 655 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC--
Confidence 8764323344455555666788999999999999873 12345 4578999999999999999999999875 2222
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001060 494 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 561 (1169)
Q Consensus 494 ~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~ 561 (1169)
+ +.+|..+..... ..|+.+.|..+.++++++.|++...+..+..+....|..+++..+|+..
T Consensus 656 ----d-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 656 ----D-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred ----C-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1 557877777654 4899999999999999999999988888887777778766665666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-12 Score=162.08 Aligned_cols=264 Identities=13% Similarity=0.068 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHH---------HcCChHHHHHHH
Q 001060 310 AEELEKYIAVREEMYKK-AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE---------RDGDFNKVVKLY 379 (1169)
Q Consensus 310 ~~~~~k~i~~~~~~y~~-~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~---------~~gd~~~a~~ly 379 (1169)
.+.+..|+..+..++.. ...+++|+..|+++|. ++|.....|..++.++. ..+++++|+..+
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 34444455444444432 3467899999999999 88988888888776543 224578999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh
Q 001060 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 459 (1169)
Q Consensus 380 eraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~ 459 (1169)
++++..+|.++++|..++.++...|++++|..+|++|+++. |+++.+|+.++.++...|++++|+..|+++ ++++|.+
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A-l~l~P~~ 405 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC-LKLDPTR 405 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCC
Confidence 99999999999999999999999999999999999999988 899999999999999999999999999998 8999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
...++.++.+....|++++|+.++++++...+ +..+..+..++.++.. .|++++|+..+++.+...|.+...+.
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~-~G~~~eA~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL-KGKHELARKLTKEISTQEITGLIAVN 479 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccchhHHHHH
Confidence 87766666667778999999999999998753 2336677778878766 99999999999999988888877776
Q ss_pred HHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001060 540 ALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 603 (1169)
Q Consensus 540 ~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v 603 (1169)
.++......++ .....++.+++..... +.+. -| .-.|+-.+||.+....+
T Consensus 480 ~l~~~~~~~g~-~a~~~l~~ll~~~~~~-~~~~----------~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 480 LLYAEYCQNSE-RALPTIREFLESEQRI-DNNP----------GL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHhccHH-HHHHHHHHHHHHhhHh-hcCc----------hH--HHHHHHHHhhhHHHHHH
Confidence 66655555542 2223344444433221 2111 11 44566667776665555
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-12 Score=141.48 Aligned_cols=413 Identities=16% Similarity=0.213 Sum_probs=269.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-------- 150 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-------- 150 (1169)
+.+++..+.+++...-.|.-..+|...+.-... -+++.....+|-++|..- .+.++|..|.+.-.+.++
T Consensus 56 ~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA--~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~ 132 (660)
T COG5107 56 ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA--RKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRF 132 (660)
T ss_pred hhHHHHHHHHHHhcCCCccccHHHHHHhcchhh--hhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhh
Confidence 568899999999999999999999977663222 258889999999999865 458999999998887763
Q ss_pred -HHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 001060 151 -MDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ 221 (1169)
Q Consensus 151 -~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~--------~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~ 221 (1169)
+-+|-+.--.|.-..|.+..+|-.|+.|+.. ...++|..|+.|.|||. .|.+- -..+|..|-.||.+.+
T Consensus 133 ~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~n-leklW~dy~~fE~e~N 210 (660)
T COG5107 133 KIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGN-LEKLWKDYENFELELN 210 (660)
T ss_pred hhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-Ccccc-HHHHHHHHHHHHHHHH
Confidence 2233333334555678999999999999872 12357899999999998 44432 2589999999999876
Q ss_pred hH-------------HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccc
Q 001060 222 EW-------------SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 288 (1169)
Q Consensus 222 ~~-------------~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~ 288 (1169)
+. ..|+..|+.+... ..............+ ..
T Consensus 211 ~~TarKfvge~sp~ym~ar~~yqe~~nl---------------t~Gl~v~~~~~~Rt~--------nK------------ 255 (660)
T COG5107 211 KITARKFVGETSPIYMSARQRYQEIQNL---------------TRGLSVKNPINLRTA--------NK------------ 255 (660)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHH---------------hccccccCchhhhhh--------cc------------
Confidence 53 3345555444322 000000000000000 00
Q ss_pred cccCCccccccCCccccCcchHHHHHHHHHHHHHHH-H-HHHHHHHHH-HHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 289 EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY-K-KAKEFDSKI-IGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 289 ~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y-~-~~~~~~~ai-~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
+ ..+....|..+|.-..+-= . ..+-.++.| -.|+.+|. |+ +-..++|+.|-.+
T Consensus 256 -------~---------~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~--y~------~~~~evw~dys~Y 311 (660)
T COG5107 256 -------A---------ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILD--YF------YYAEEVWFDYSEY 311 (660)
T ss_pred -------c---------cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHH--Hh------hhhHHHHHHHHHH
Confidence 0 0000111111111100000 0 000001111 13555554 11 2235899999999
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--------------c----ChH-
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK--------------R----LPE- 426 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p--------------~----~~~- 426 (1169)
....+|-++|++.-++++..||. +.++|+.+++..++.++...+|+++++.... + .++
T Consensus 312 ~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~El 388 (660)
T COG5107 312 LIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKEL 388 (660)
T ss_pred HhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHH
Confidence 99999999999999999876665 8899999999888888888888887764421 0 111
Q ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 427 ----------IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 427 ----------l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~-r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
+|+-+...-.+..-++.||.+|-++ .+..--...+++.-|.+|. ..|+...|-.+|+..+..+++
T Consensus 389 l~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d--- 464 (660)
T COG5107 389 LLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPD--- 464 (660)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCC---
Confidence 2333334445666789999999997 3322122334443344432 357889999999999999864
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC--HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s--~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
.+.+-..|..|+.. .++-+.||.+|+++++...+. ..+|..|+.+|...|+ +..+-++=+|+....|
T Consensus 465 ---~~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~p 533 (660)
T COG5107 465 ---STLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVP 533 (660)
T ss_pred ---chHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcC
Confidence 24456788888887 999999999999999977666 7999999999999998 4455556566555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=137.99 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+.+.++.-+...|++..|+.-+++|+++. |++...|..+|.++.+.|+.+.|.+.|+++ +.+.|++.++..+|+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA-lsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKA-LSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHH-HhcCCCccchhhhhhHHH
Confidence 466677777777888888888888888876 888888888888888888888888888888 788888888889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 550 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~ 550 (1169)
+.+|.+++|...|++|+.... -+..+..|.+.+.+..+ .|+.+.|+.+|+++|+++|+.+.-...++.++..-++
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~----Y~~~s~t~eN~G~Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPA----YGEPSDTLENLGLCALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCC----CCCcchhhhhhHHHHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 888999999999998887542 12224567777777666 8899999999999999999998888888888887766
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 551 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 551 ~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
.--++..+++.....+-+ .+-+..-|+++...||.+.+.+...+...+||..
T Consensus 189 ---y~~Ar~~~~~~~~~~~~~---------A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 189 ---YAPARLYLERYQQRGGAQ---------AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred ---chHHHHHHHHHHhccccc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 344677888887765422 2356677889999999999999999999999974
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=160.99 Aligned_cols=137 Identities=14% Similarity=0.013 Sum_probs=107.4
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|.....|..++..+...|++++|+..|++++..+|.++..++.++..+...|++++|+..+++++...+|+.+..+..
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~ 446 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM 446 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence 44555556666677677788888999999999999998877665555555567889999999999887766778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++.++...|++++|+..+.++ ....|.....+..++..+.+.| +++...+++.++..
T Consensus 447 la~~l~~~G~~~eA~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEI-STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 999998999999999999886 6668887777877777777776 47888777766654
|
|
| >KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=148.50 Aligned_cols=94 Identities=23% Similarity=0.433 Sum_probs=82.1
Q ss_pred ccccCCCCCCCCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC
Q 001060 1019 FEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP 1097 (1169)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~ 1097 (1169)
|.+..++.. .+.+-++|||+-|++++++..|+..|++||+|+.|. +|++..||+++|||||+|++..++..|.+. .|
T Consensus 88 wdP~~dp~a-~gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir-lV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 88 WDPNNDPNA-IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR-LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred cCCCCCCcc-cCCccceeeeeeccccccHHHHHHHHHhcCcceeEE-EeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 444444333 346789999999999999999999999999999997 488999999999999999999999999987 79
Q ss_pred CeeeceEEEEEeccCCC
Q 001060 1098 IQLAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1098 ~~i~g~~l~V~~~r~~~ 1114 (1169)
+.|+|+.|.|+.-+.+.
T Consensus 166 ~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 166 IKIDGRRILVDVERGRT 182 (335)
T ss_pred ceecCcEEEEEeccccc
Confidence 99999999998877654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-12 Score=148.36 Aligned_cols=440 Identities=14% Similarity=0.149 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001060 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 163 (1169)
Q Consensus 84 ~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~ 163 (1169)
........+...|.+.+.|..+.... .....|..++.--......+.++.+|...|.
T Consensus 17 ~~~~~n~~~~~~p~~~~~we~~~~~~-----------------------~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ 73 (577)
T KOG1258|consen 17 QFSTDNTSLTKYPDSLDYWEILSNDS-----------------------LDFDAWTTLIQENDSIEDVDALREVYDIFLS 73 (577)
T ss_pred ccCccchhhhhCcchhhHhhccccch-----------------------hcccchHHHHhccCchhHHHHHHHHHHHHHh
Confidence 34445556777788777777655432 2234555444433333456889999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcchhh--
Q 001060 164 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ-QEWSRVAMIYTRILENPIQQ-- 240 (1169)
Q Consensus 164 ~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~-~~~~~a~~iY~r~L~~p~~~-- 240 (1169)
.+|.+..+|..|+.++. ..|..+++.++|||+|..++. |..||..|+.|.... ++-+.+++.|.+++..-..+
T Consensus 74 kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~ 149 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPL---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFL 149 (577)
T ss_pred hCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchh
Confidence 99999999999999999 899999999999999998875 999999999998875 55666999999999973332
Q ss_pred HHHHHHHHHHHHhcC-CCccccCHHHHHHHHHHHhh----CCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 241 LDRYFSSFKEFAASR-PLSELRTAEEVDAAAVAVAA----APSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~~~~~eea~~~~~~~~~----~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
-..+|..|.+|++.. ....+ ..+.+.++. .+...+....... ...+. ...... ..
T Consensus 150 S~~lWdkyie~en~qks~k~v------~~iyeRileiP~~~~~~~f~~f~~~l--------~~~~~---~~l~~~---d~ 209 (577)
T KOG1258|consen 150 SDPLWDKYIEFENGQKSWKRV------ANIYERILEIPLHQLNRHFDRFKQLL--------NQNEE---KILLSI---DE 209 (577)
T ss_pred ccHHHHHHHHHHhccccHHHH------HHHHHHHHhhhhhHhHHHHHHHHHHH--------hcCCh---hhhcCH---HH
Confidence 267888888886432 11111 111111100 0011110000000 00000 000000 00
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHhhccCCcccCCCC--hhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 001060 316 YIAVREEMYKK-----AKEFDSKIIGFETAIRRPYFHVKPLS--VTELENWHNYLDFIERD----GDFNKVVKLYERCLI 384 (1169)
Q Consensus 316 ~i~~~~~~y~~-----~~~~~~ai~~~e~al~r~~~~v~pl~--~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~ 384 (1169)
++..+..+-.. .++..+....+-+-+. .|.. .....+.+.++...++. -.....+..||..+.
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~------~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDST------DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhcc------CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11111111000 0001111111111111 1110 00001112221111110 111122333333332
Q ss_pred h--------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 385 A--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 385 ~--------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
. .....+-|..|..+.+..|+++.....|+|++-.+ -...++|+.|+++.+..|+.+-|..++.+++.-..
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 2 22344799999999999999999999999998766 78899999999999999999999999998866678
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH---HHHHHHhhhc--
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR---QILVDSLDHV-- 531 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar---~i~~kAl~~~-- 531 (1169)
|..+.+.+.++.|+...|+++.|+.+|++.....|+ +-.+-..++.++++ .|+.+.+. .++.......
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg------~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG------LVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc------hhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccC
Confidence 889999999999999999999999999999987653 23455677888887 88888888 4433333321
Q ss_pred -CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 532 -QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 532 -p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
.....++..++.|-...-. ..+.++.++..++...+++. .+|..++.|+...+
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~--d~~~a~~~l~~~~~~~~~~k---------~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIRE--DADLARIILLEANDILPDCK---------VLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhcCCccH---------HHHHHHHHHHHhCC
Confidence 1123555677777766532 25667888888888776654 58999999998877
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-13 Score=153.48 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
..+..|.-.++.+.||+.|+++|. +||...-.+..++-=.....++++|+..|+.+|.++|.+..+|+-++.
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQ--------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQ--------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGT 497 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhc--------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhh
Confidence 346778888888888888888888 777655444444433345567888888888888888888888988888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
.+.++++++.|.-.|++|++++ |.+..+...++.++.+.|+.|+|+.+|++| ..++|.++--.+..+.++..++++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A-~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKA-IHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHH-HhcCCCCchhHHHHHHHHHhhcchHH
Confidence 8888888888888888888888 778888888888888888888899888888 67888888888888888888888888
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
|...+++.-++.|.+ ..++..++++..+ .|+.+.|..-|-=|+.++|.-..
T Consensus 576 al~~LEeLk~~vP~e------s~v~~llgki~k~-~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVPQE------SSVFALLGKIYKR-LGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCcch------HHHHHHHHHHHHH-HccchHHHHhhHHHhcCCCccch
Confidence 888888887777532 4567677777554 88888888888888888876554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=140.61 Aligned_cols=225 Identities=14% Similarity=0.060 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++..+...-+.++. ++.-+.....+.+...--+||++++...|+.+|..+..+.+..+..+...+.+|+++
T Consensus 470 k~~~~aqqyad~aln--------~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld 541 (840)
T KOG2003|consen 470 KDFADAQQYADIALN--------IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD 541 (840)
T ss_pred cchhHHHHHHHHHhc--------ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH
Confidence 355555555566655 444444444444433345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
+|+++|-+...+. .++.+++...+.+++...+...|+++|.++ ..+.|+++.++.++++++.+.|+-..|..++-...
T Consensus 542 eald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~-~slip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA-NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh-cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 9999999988877 789999999999999999999999999998 88999999999999999999999999999988888
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..+|.+ .+....++.++.. ..-.++|+..|++|--+-|+-..+-+..+.--.+.|+ ...+..+|......
T Consensus 620 ryfp~n------ie~iewl~ayyid-tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 620 RYFPCN------IETIEWLAAYYID-TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQKAFDLYKDIHRK 689 (840)
T ss_pred cccCcc------hHHHHHHHHHHHh-hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHh
Confidence 888632 2233333333222 4447899999999998888766555444544445555 55567777777777
Q ss_pred CCCCC
Q 001060 568 NSDSP 572 (1169)
Q Consensus 568 ~~~~~ 572 (1169)
+|.+-
T Consensus 690 fpedl 694 (840)
T KOG2003|consen 690 FPEDL 694 (840)
T ss_pred Cccch
Confidence 76553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-11 Score=142.87 Aligned_cols=119 Identities=8% Similarity=0.031 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
+|++++|+++..+.-...+...-++...+....+.|+++.|...|+++.+..|++. ......+.+.. ..|+++.|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 47888888777766554433344555556666888888888888888888777653 33334466666 67888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
++++++..| .+..............|+|+.|..++.++.+.
T Consensus 176 l~~~~~~~P---~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 176 VDKLLEVAP---RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHhcCC---CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 888888444 35555666666667778888888888777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-12 Score=149.65 Aligned_cols=293 Identities=7% Similarity=-0.030 Sum_probs=223.9
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVVEV 157 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~~l 157 (1169)
+.+..+.+.+.++.+..|...-.+...++.+... |+.+++...|+++++.+|++. .....++.+.+..|+++.|...
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3477899999999999999888888889988874 699999999999999999985 6777789999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhc
Q 001060 158 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVA-MIYTRILEN 236 (1169)
Q Consensus 158 ~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~-~iY~r~L~~ 236 (1169)
+++.++..|.+..++..++..+. ..|+.+.+++.+++.++....+ ..- +..+. ..+...+
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~-~~~d~~~a~~~l~~l~k~~~~~---~~~-------------~~~l~~~a~~~~l-- 236 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYI-RSGAWQALDDIIDNMAKAGLFD---DEE-------------FADLEQKAEIGLL-- 236 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCC---HHH-------------HHHHHHHHHHHHH--
Confidence 99999999999999999999998 8899999999999999842221 110 00000 0000000
Q ss_pred chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHH
Q 001060 237 PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316 (1169)
Q Consensus 237 p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~ 316 (1169)
.. +
T Consensus 237 ------------~~---------------~-------------------------------------------------- 239 (409)
T TIGR00540 237 ------------DE---------------A-------------------------------------------------- 239 (409)
T ss_pred ------------HH---------------H--------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH----
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---- 392 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~---- 392 (1169)
..++.+..++.+... .+...+++..++..++..+...|++++|+.++++++...|.+...
T Consensus 240 ------------~~~~~~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~ 303 (409)
T TIGR00540 240 ------------MADEGIDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL 303 (409)
T ss_pred ------------HHhcCHHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH
Confidence 000000011111110 000122457889999999999999999999999999999988764
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHcCCHHHHHHHHHH--HhhhcCCChHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLP--EIHLFAARFKEQNGDIDGARAAYQL--VHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~--~l~~~~a~~~e~~g~~~~A~~~~~~--a~~~~~P~~~~~~~~~a~ 468 (1169)
...++. ...++.+.++..++++++.+ |+++ .+...+|.++.+.|++++|++.|++ + .+..|+... +..++.
T Consensus 304 l~~~~~--l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~-~~~La~ 378 (409)
T TIGR00540 304 CLPIPR--LKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDAND-LAMAAD 378 (409)
T ss_pred HHHhhh--cCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHH-HHHHHH
Confidence 222222 22467888999999999987 8999 8899999999999999999999994 4 567887765 558999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 001060 469 MERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++.++|+.++|..+|++++...
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-11 Score=133.73 Aligned_cols=208 Identities=17% Similarity=0.071 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g 404 (1169)
..+++++.+...|.++|. -+....+..++.+-.++..|+.++++..|-+.....-++.++.+.++.+++...
T Consensus 501 f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred eecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 345789999999999998 577788899999888899999999999999999888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
+...|+++|..+..+. |++|.++-.++.++.+.|+...|..++-.. -...|.+.+..--++.++....-.++++..|+
T Consensus 573 d~aqaie~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~yds-yryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDS-YRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred CHHHHHHHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhc-ccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999877 999999999999999999999999987776 56799999886556666666666799999999
Q ss_pred HHHHhhhCCCccCchHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC
Q 001060 485 QAIAIEKGKEHSQTLPMLYAQ-YSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 550 (1169)
Q Consensus 485 ~Al~~~~~~~~~~~~~~l~~~-~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~ 550 (1169)
+|.-+.|+. .-|.. .+.++ +..|++.+|..+|+.....+|.+...+..++.+...+|-
T Consensus 651 kaaliqp~~-------~kwqlmiasc~-rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALIQPNQ-------SKWQLMIASCF-RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcCccH-------HHHHHHHHHHH-HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998887642 23433 34444 449999999999999999999999888777777666554
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=156.32 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=72.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~~~ 1110 (1169)
++|||+|||..+|+++|+++|++||.|+.+.| ++++.+|+++|||||+|.+.++|++||+. +++.|.| +.|+|..+
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNI-LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 68999999999999999999999999999876 56777999999999999999999999987 8888866 67889887
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+.+..
T Consensus 273 ~~~~~ 277 (346)
T TIGR01659 273 EEHGK 277 (346)
T ss_pred Ccccc
Confidence 76543
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=132.18 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=69.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++||||||+..+++.+|+.+|..||+|.. |+|-. .+.|||||||++..+|..|+.. +|..|.|..|+||..+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--vWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRS--VWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCccee--EEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 589999999999999999999999999999 55533 3568999999999999999987 8999999999999988
Q ss_pred CCCCCC
Q 001060 1112 PNTGST 1117 (1169)
Q Consensus 1112 ~~~~~~ 1117 (1169)
.+...+
T Consensus 84 G~~r~~ 89 (195)
T KOG0107|consen 84 GRPRGS 89 (195)
T ss_pred CCcccc
Confidence 765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-10 Score=129.36 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC--------------------------CChhcHHHHHHHHHHHHHc
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP--------------------------LSVTELENWHNYLDFIERD 369 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p--------------------------l~~~~~~~W~~yl~~~~~~ 369 (1169)
++..+.+.+....++.++.+.++..++..=||.+. +.|...--|+..+-++.--
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 44445555555666777777766666644444322 2366667788888888778
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 449 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~ 449 (1169)
|.+.+|++.|-+|...++.+...|+.+|..+.-.+..|.|..+|.+|.++. +.+-.-.+.++.=+-+.++++-|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 889999999999999999999999999998888888999999999998877 6666666666666667888999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
.+ ..+.|.++-+..-.+.+....+.+.+|..+|+.++...+.... ......++.+++....+ .+.+++|+..|+++|
T Consensus 405 ~A-~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QA-LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKAL 482 (611)
T ss_pred HH-HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHHH
Confidence 98 7889999999888888888888999999999999954332110 11123467888888776 999999999999999
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-HHhhC
Q 001060 529 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF-LGLFG 595 (1169)
Q Consensus 529 ~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f-e~~~G 595 (1169)
...|.+...+-..+.+-.-+|+ ++.+...|.++|...|++. -..+++...|+- +...|
T Consensus 483 ~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n~------~~~~lL~~aie~~~~~~~ 541 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPDNI------FISELLKLAIEDSECKSG 541 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCccH------HHHHHHHHHHHhhhhhcc
Confidence 9999999999877777777776 6778889999999988874 234566666666 44455
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-10 Score=127.87 Aligned_cols=416 Identities=12% Similarity=0.088 Sum_probs=255.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+....++..|-++|.++|.|--.+..-+..+.++ +++.+|.+=-.+.+.+.|+=...|...+....-+|+|++|+..|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 3467888888999999988766666555555554 48888888888888888988888888888888889999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-- 236 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-- 236 (1169)
.++|+..|.|..|.-.+.+... . .+.+ +.-+....+|.....-.... ..-....|..+|+.
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~-----~-----~~~~-----~~~~~~p~~~~~l~~~p~t~--~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYL-----E-----DYAA-----DQLFTKPYFHEKLANLPLTN--YSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhh-----H-----HHHh-----hhhccCcHHHHHhhcChhhh--hhhccHHHHHHHHHhh
Confidence 9999988888777655554432 1 1111 12223455666666533332 12222334333332
Q ss_pred -chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccc---cCCccccccCCccccCcchHHH
Q 001060 237 -PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE---VQPDATEQTSKPVSAGLTEAEE 312 (1169)
Q Consensus 237 -p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~e~~~~~~~~~~~~~~~ 312 (1169)
.+.++..+.+ ...+.... -++.-..........+... ..|..-+..+.+...+.+....
T Consensus 157 ~~p~~l~~~l~-d~r~m~a~----------------~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 157 KNPTSLKLYLN-DPRLMKAD----------------GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR 219 (539)
T ss_pred cCcHhhhcccc-cHHHHHHH----------------HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence 2222222221 11110000 0000000000000000000 0010000001111111111111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001060 313 L---EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY 389 (1169)
Q Consensus 313 ~---~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~ 389 (1169)
. ..-...++....+.+.+..++..|..+|. ++ .......+....+.+.|.+.+.+...+.+++.....
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 1 01112224455567889999999999998 67 666666666666667777776666666655443322
Q ss_pred HHHHH-------HHHHHHHHcCChHHHHHHHHHHHHHhhc-------------------------cChHHHHHHHHHHHH
Q 001060 390 PEYWI-------RYVLCMEASGSMDLAHNALARATHVFVK-------------------------RLPEIHLFAARFKEQ 437 (1169)
Q Consensus 390 ~e~W~-------~~a~~l~~~g~~e~A~~vl~rAl~~~~p-------------------------~~~~l~~~~a~~~e~ 437 (1169)
-.-.. +.+..+.+.++++.++..|.+++.-+.. ....--...+.-..+
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 11111 1223444456788888888888865521 001111112444567
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 517 (1169)
.|++.+|...|.++ ++.+|++..+|.+++.++.++|++..|.+..+.+|+++| .....|+.-+..++. ..++
T Consensus 371 ~gdy~~Av~~YteA-Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p------~~~kgy~RKg~al~~-mk~y 442 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEA-IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP------NFIKAYLRKGAALRA-MKEY 442 (539)
T ss_pred ccCHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHH-HHHH
Confidence 89999999999998 888999999999999999999999999999999999975 345677777777766 7889
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 518 EKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 518 e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
++|.+.|+++++++|.+..+...|...-..
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999988877665553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-11 Score=132.46 Aligned_cols=199 Identities=13% Similarity=0.101 Sum_probs=171.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
....|..++..+...|++++++..|++++...|.+...|..++.++...|++++|...|+++++.. |++..++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 357788888888899999999999999999999999999999999999999999999999999987 7888999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTET--SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~--~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+...|++++|+..|+++ +.. .+.....|..++.++...|++++|...|++++...+. .+..+..++.+++.
T Consensus 109 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHH
Confidence 99999999999999998 443 3556778999999999999999999999999998753 25678888888877
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral 565 (1169)
.|++++|..+++++++..|.+...+...+.+....++ .+.++.+.+.+.
T Consensus 182 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 -RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQ 230 (234)
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 9999999999999999988888777777777776665 344555555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=133.93 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..+...|...+++++++..|+++++ .+|.....|..++..+...|++++++..|++++...|.+..+|..++
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALE--------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3446678889999999999999998 56777889999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 398 LCMEASGSMDLAHNALARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
.++...|++++|...|++++.... +....++..++.++...|++++|...|.++ ++.+|++...|..++.++...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA-LQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999997431 345678888999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
++|..++++++...+. .+..+...+.+... .|+.++|+.+++.+....|
T Consensus 186 ~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQ------TAESLWLGIRIARA-LGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhCc
Confidence 9999999999998532 24555566777665 8999999999888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=150.99 Aligned_cols=133 Identities=23% Similarity=0.397 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-GSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
.|..+.++.... +.++.||++|++++...+.+..+|..+|.+|... ++.+.|.+||+++|+.+|.+.++|..|+.|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 699999998885 4799999999999976677899999999999995 5566699999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 180 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
+ ..++.+.||.+|||++..++.+..+..||..|++||...|+++.+++|++|+.+.
T Consensus 81 ~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 I-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp H-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred H-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 7899999999999999988776657789999999999999999999999999987
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-10 Score=134.86 Aligned_cols=392 Identities=13% Similarity=0.154 Sum_probs=265.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHH
Q 001060 121 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--TYGDPETIRRLFERGLA 198 (1169)
Q Consensus 121 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~--~~~~~e~Ar~~~erAl~ 198 (1169)
+..++.-+...+.++.....|+.+..+.|++++.+..=+.+..+.|.+..+|+.|+.=... ..++...+...|++||.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 3445666677788888888889999999999999999999999999999999999875552 23566788889999994
Q ss_pred hcCCCCCCHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCCccccCHHHHHH
Q 001060 199 YVGTDYLSFPLWDKYIEYEYMQ-------QEWSRVAMIYTRILENPI---QQLDRYFSSFKEFAASRPLSELRTAEEVDA 268 (1169)
Q Consensus 199 ~~g~d~~s~~lw~~y~~~e~~~-------~~~~~a~~iY~r~L~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~eea~~ 268 (1169)
|+.+..||..|+.|.... +.++..|.+|.|+|..-. ..-..+|..|.+|+..
T Consensus 179 ----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~-------------- 240 (881)
T KOG0128|consen 179 ----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVT-------------- 240 (881)
T ss_pred ----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHH--------------
Confidence 788999999999999875 357889999999998622 2335566666665322
Q ss_pred HHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001060 269 AAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV 348 (1169)
Q Consensus 269 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v 348 (1169)
|..+.+.++.+..|...+..++++-
T Consensus 241 -------------------------------------------------------~l~n~~~~qv~a~~~~el~~~~D~~ 265 (881)
T KOG0128|consen 241 -------------------------------------------------------YLCNVEQRQVIALFVRELKQPLDED 265 (881)
T ss_pred -------------------------------------------------------HHHhHHHHHHHHHHHHHHhccchhh
Confidence 1111222333334444444332211
Q ss_pred CCCChhcHHHHH--HHHHHHH-----HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 349 KPLSVTELENWH--NYLDFIE-----RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 349 ~pl~~~~~~~W~--~yl~~~~-----~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
.-..++.-|+ .+.+.+. ...+..+.+..|++.+...+.....|+.|+.+....|+.-.-..+++|++.-.
T Consensus 266 --~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~- 342 (881)
T KOG0128|consen 266 --TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM- 342 (881)
T ss_pred --hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc-
Confidence 0011222222 1222111 11223456677888888888888899999999999999888888999998766
Q ss_pred ccChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCch
Q 001060 422 KRLPEIHLFAARFKEQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
..+..+|+.|+.++.. ++--+.+..++-++ +..+|-...+|-++-..+.|.+. .......+++++...
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra-~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~--------- 412 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRA-VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT--------- 412 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchh-hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH---------
Confidence 6679999999977643 34444566677777 67788888888877755545443 344555667766653
Q ss_pred HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHhhhc----C----CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 500 PMLYAQYSRFLHLV-----SRNAEKARQILVDSLDHV----Q----LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~-----~g~~e~Ar~i~~kAl~~~----p----~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
-.++..|..+..+. ..+++.-|+.|..|.... . ....++..|+.+|.++.. +.+..|.++.-++.
T Consensus 413 ~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 413 VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhcccc
Confidence 12444444333331 124566677777776632 1 123677789999988742 26778888887777
Q ss_pred cCCCCCCCCCHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001060 567 SNSDSPSTANAAEREE-LSCVFLEFLGLFGDAQLIKKAEDRHAR 609 (1169)
Q Consensus 567 ~~~~~~~~l~~~~~~~-i~~~~l~fe~~~Gd~~~i~~v~~R~~~ 609 (1169)
.... +.. .|-.|+..|..||+..++++++++...
T Consensus 491 y~~~---------~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 491 YGGG---------SIAGKWLEAINLEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred CCcc---------hHHHHHHHHHhHHHHhCCchhHHHHHHHHHh
Confidence 6432 233 899999999999999999996665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=138.18 Aligned_cols=147 Identities=12% Similarity=-0.044 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~----d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
.+..+.++.++|..+|. ....|+.++.++... |+.++|+..|+++++.+|++..+|..++..+...|++++|+.
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45788999999975553 356799999998885 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
.|+++|++.|.+...|...+..+. ..|++++|.+.|+++++..+.++. ..+|... ....++.++|...|.+.+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l---~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPY-RALWLYL---AESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH---HHccCCHHHHHHHHHHHH
Confidence 999999999999999999998887 789999999999999996665431 2344322 223456677777665544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-11 Score=133.56 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+-.|...+++.+|++.|-++.. +|+.--..|..|+.-+--.+..++++..|-+|-...+....=.+-++.-+
T Consensus 319 g~YYl~i~k~seARry~SKat~--------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATT--------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEY 390 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhh--------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 5567778999999999999987 89999999999999888888999999999999999887655455555556
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---cCCC---hHHHHHHHHHHHHHcC
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE---TSPG---LLEAIIKHANMERRLG 474 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~---~~P~---~~~~~~~~a~~e~r~g 474 (1169)
.+.++++.|...|..|+.++ |.+|.+....+-+....+.+.+|...|+.++.. ..+. -..+|.+++.++++++
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 66889999999999999999 899999999999999999999999999987421 1222 2245899999999999
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
.+++|+..|+++|...|.+ +..+...+.+... .|+++.|...|.+||-+.|++.
T Consensus 470 ~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKD------ASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCccH
Confidence 9999999999999998643 5567666666444 9999999999999999999985
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=125.31 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=161.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
..++--+.+.||+..|...++++|..+|.+...|..++.++.+.|..+.|.+.|++|+.+. |++.+++..|+.|++.+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3344445788999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 440 DIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
.+++|...|+++ +. .|. ....|.+.+.+-.+.|+++.|+.+|+++|+++|+. |.....+++.++. .|+
T Consensus 118 ~~~eA~q~F~~A-l~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~-~~~ 188 (250)
T COG3063 118 RPEEAMQQFERA-LA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYK-AGD 188 (250)
T ss_pred ChHHHHHHHHHH-Hh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHh-ccc
Confidence 999999999998 33 454 45679999999999999999999999999998753 5567788899888 999
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChh
Q 001060 517 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 552 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~ 552 (1169)
+-.||..+++-....+-+...+.--+.|+..+|+..
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 999999999999887777765556778888888743
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=137.79 Aligned_cols=282 Identities=9% Similarity=0.015 Sum_probs=209.0
Q ss_pred HHHHhCCCC---HHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 90 NIVKANSSD---FSAWTAL-LEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-YWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 90 ~al~~nP~d---~~aw~~L-~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~-~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
+++..+|.+ ......+ +..... .|+++++...|+++.+..|++.- .....+++.+..|++++|...+++.+..
T Consensus 105 k~l~~~~~~~~~p~l~~llaA~aA~~--~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 105 KLMTRNADHAEQPVVNYLLAAEAAQQ--RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444444443 2333333 444355 46999999999999999999853 3345589999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001060 165 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 244 (1169)
Q Consensus 165 ~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~ 244 (1169)
.|.+..+....+..+. ..|+.+++.+++++..+....+ ... ..++..++.
T Consensus 183 ~P~~~~al~ll~~~~~-~~gdw~~a~~~l~~l~k~~~~~---~~~----------------~~~l~~~a~---------- 232 (398)
T PRK10747 183 APRHPEVLRLAEQAYI-RTGAWSSLLDILPSMAKAHVGD---EEH----------------RAMLEQQAW---------- 232 (398)
T ss_pred CCCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCC---HHH----------------HHHHHHHHH----------
Confidence 9999999999999998 7899999999999998843321 110 110110000
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH
Q 001060 245 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY 324 (1169)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y 324 (1169)
.......... .+.+.+.++
T Consensus 233 ~~l~~~~~~~-----------------------------------------------------~~~~~l~~~-------- 251 (398)
T PRK10747 233 IGLMDQAMAD-----------------------------------------------------QGSEGLKRW-------- 251 (398)
T ss_pred HHHHHHHHHh-----------------------------------------------------cCHHHHHHH--------
Confidence 0000000000 000000000
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g 404 (1169)
++..-+ ..+++..++..|+..+...|+.++|..+.++++. .+.++++...|+.+. .+
T Consensus 252 ------------w~~lp~--------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~~ 308 (398)
T PRK10747 252 ------------WKNQSR--------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK--TN 308 (398)
T ss_pred ------------HHhCCH--------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc--CC
Confidence 111101 2245578899999999999999999999999998 577888888888753 48
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
+.++++..+++.++.+ |+++.+++.+|+++.+.+++++|+..|+++ .+..|++. .+..++.++.++|+.++|..+|+
T Consensus 309 ~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~a-l~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 309 NPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAA-LKQRPDAY-DYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999988 899999999999999999999999999998 78899864 46678999999999999999999
Q ss_pred HHHHhh
Q 001060 485 QAIAIE 490 (1169)
Q Consensus 485 ~Al~~~ 490 (1169)
+++...
T Consensus 386 ~~l~~~ 391 (398)
T PRK10747 386 DGLMLT 391 (398)
T ss_pred HHHhhh
Confidence 999865
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-10 Score=120.02 Aligned_cols=309 Identities=14% Similarity=0.104 Sum_probs=179.9
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
.+|.|++-...|+..+.. .+.+..|...|-++++.+|+++...+.-+-.++..|.-.-|+.=+.|.|.+-|+-...-+
T Consensus 33 ~~~advekhlElGk~lla--~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLA--RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 456677777777776665 357777888888888888888877777788888888777777777888877776666666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHhcch
Q 001060 174 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ---------------QEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 174 ~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~---------------~~~~~a~~iY~r~L~~p~ 238 (1169)
.-+..++ ..|.++.|..-|...|+..+.+ ...-..+-+..... |+...|+.....+|++-+
T Consensus 111 QRg~vll-K~Gele~A~~DF~~vl~~~~s~---~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 111 QRGVVLL-KQGELEQAEADFDQVLQHEPSN---GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred Hhchhhh-hcccHHHHHHHHHHHHhcCCCc---chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 6666666 6777788877788777743322 11112222211111 111222222222221100
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~ 318 (1169)
= + ..+..
T Consensus 187 W---------------------------------------------------------------------d----a~l~~ 193 (504)
T KOG0624|consen 187 W---------------------------------------------------------------------D----ASLRQ 193 (504)
T ss_pred c---------------------------------------------------------------------h----hHHHH
Confidence 0 0 00333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.|.+.|...++...||..+..+-+ +...+.+..+....++-..||.+..+...+.||+.+|.+-..+-.|-.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~ask--------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASK--------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHh--------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 455667777777777777776655 666777788888888778888888888888899888877654433322
Q ss_pred H------H------HHcCChHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 399 C------M------EASGSMDLAHNALARATHVFVKRLPEI----HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 399 ~------l------~~~g~~e~A~~vl~rAl~~~~p~~~~l----~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+ + ...+++.+++...++.++.. |..+.+ +-.+..+...-+++-+|+..+.++ +++.|++.++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev-L~~d~~dv~~ 343 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV-LDIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHH-HhcCchHHHH
Confidence 1 1 11123334444444444332 221211 112233334445555555555555 4555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
+..++..+.-...|+.|+.-|++|++.++
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 55555555555555556666665555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-09 Score=125.85 Aligned_cols=410 Identities=13% Similarity=0.047 Sum_probs=279.3
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLH 174 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~ 174 (1169)
+|...|..|.-.+... |++..+.++||+++..-=...+.|..++.-+...|.-.+|+.+.+.++... |.+....+.
T Consensus 321 nd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 5777777777666664 599999999999998777788999999999999999999999999999999 777777777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCC---CCC---HHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhcchhhH
Q 001060 175 YCIFAINTYGDPETIRRLFERGLAYVGTD---YLS---FPLWDKYIEYEYMQ-------QEWSRVAMIYTRILENPIQQL 241 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~~~g~d---~~s---~~lw~~y~~~e~~~-------~~~~~a~~iY~r~L~~p~~~~ 241 (1169)
-.+...+..+..+++..+-.+++...+.. ... ..+...|......- -...++.+.|++++++.+.+.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 77777778888899988888888854311 111 11222222211111 124668888999998866666
Q ss_pred HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHH
Q 001060 242 DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 321 (1169)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~ 321 (1169)
..+|...-.+...+.+.. |.......+.. . ...+.. .+..+.
T Consensus 479 ~~if~lalq~A~~R~l~s------Al~~~~eaL~l----------~------------------~~~~~~----~whLLA 520 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTS------ALDYAREALAL----------N------------------RGDSAK----AWHLLA 520 (799)
T ss_pred hHHHHHHHHHHHHHhHHH------HHHHHHHHHHh----------c------------------CCccHH----HHHHHH
Confidence 666665555544433221 11100000000 0 001111 222334
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH-----
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY----- 396 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~----- 396 (1169)
.++...+++..|+.+.+.++. .-+.+..+-+--+..+...+|.+.++......| .+|...
T Consensus 521 LvlSa~kr~~~Al~vvd~al~--------E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L-------~~we~~~~~q~ 585 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALE--------EFGDNHVLMDGKIHIELTFNDREEALDTCIHKL-------ALWEAEYGVQQ 585 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--------HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH-------HHHHhhhhHhh
Confidence 466677788888887777776 334444444444555555566666655555554 556511
Q ss_pred ----HHHHHH-------cCChHHHHHHHHHHHHHh------------hc------c-------ChHHHHHHHHHHHHcCC
Q 001060 397 ----VLCMEA-------SGSMDLAHNALARATHVF------------VK------R-------LPEIHLFAARFKEQNGD 440 (1169)
Q Consensus 397 ----a~~l~~-------~g~~e~A~~vl~rAl~~~------------~p------~-------~~~l~~~~a~~~e~~g~ 440 (1169)
+..+.. .++...|...+.++.... .| . ...+|+..+.+..+.++
T Consensus 586 ~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~ 665 (799)
T KOG4162|consen 586 TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN 665 (799)
T ss_pred hhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 111111 112223333333332211 01 1 23688899999999999
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH--H
Q 001060 441 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA--E 518 (1169)
Q Consensus 441 ~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~--e 518 (1169)
-++|+.++.++ ..+.|....+|+..+.+....|..++|.+.|..|+.++|++ +.....++.++.+ .|+. .
T Consensus 666 ~~~a~~CL~Ea-~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle-~G~~~la 737 (799)
T KOG4162|consen 666 DDEARSCLLEA-SKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLE-LGSPRLA 737 (799)
T ss_pred chHHHHHHHHH-HhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHH-hCCcchH
Confidence 99999999998 78899999999999999999999999999999999999753 4466678888776 7764 4
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 519 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 519 ~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++|.++..|++.+|.+...|..+...-...|+ .+.+-.||.-+++....+|
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCC
Confidence 55559999999999999999999999999998 5668889999988776665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-11 Score=134.56 Aligned_cols=219 Identities=8% Similarity=-0.026 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+.+.+|..|.++|.+ .++++. ....|...+..+...|+.+.|+..|++++...|.++++|..++.++...|+++
T Consensus 41 ~~e~~i~~~~~~l~~-----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 41 QQEVILARLNQILAS-----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred HHHHHHHHHHHHHcc-----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 455667777777763 234444 36789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
+|...|++++++. |++..+|+.++.++...|++++|...|+++ ++++|++... ..+..+....+++++|...|++++
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a-l~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAF-YQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999987 899999999999999999999999999998 7889998732 222233455788999999998877
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh-------hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHH
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL-------DHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl-------~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
...+. ..|. ++..... .|++.++ ..++.++ ++.|.....|..++......|+ .+.+..+
T Consensus 193 ~~~~~--------~~~~-~~~~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~ 258 (296)
T PRK11189 193 EKLDK--------EQWG-WNIVEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAAL 258 (296)
T ss_pred hhCCc--------cccH-HHHHHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 55421 1222 2222222 5555433 2333333 4445555667777777777777 6779999
Q ss_pred HHHHhhcCC
Q 001060 561 VDKFLMSNS 569 (1169)
Q Consensus 561 ~eral~~~~ 569 (1169)
|++++..++
T Consensus 259 ~~~Al~~~~ 267 (296)
T PRK11189 259 FKLALANNV 267 (296)
T ss_pred HHHHHHhCC
Confidence 999998765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-09 Score=117.29 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=85.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHH
Q 001060 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPL 209 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~l 209 (1169)
-.|....-.+.++.-.+..+++..|..-|..++...|++....+.-+..++ ..|+-..|..-+++.|+.- +||....|
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelK-pDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELK-PDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcC-ccHHHHHH
Confidence 345556667788888999999999999999999999999999888888888 7898888999999999843 55554443
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 210 WDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 210 w~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
.-...++++|++++|..=|+.+|...+
T Consensus 111 --QRg~vllK~Gele~A~~DF~~vl~~~~ 137 (504)
T KOG0624|consen 111 --QRGVVLLKQGELEQAEADFDQVLQHEP 137 (504)
T ss_pred --HhchhhhhcccHHHHHHHHHHHHhcCC
Confidence 334456779999999999999988743
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=144.39 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
.....++|||+|||+++|+++|+++|+.||+|++|+| +++..+++++|||||+|.+.++|.+||+. +++.|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i-~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRI-MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3446799999999999999999999999999999876 66778999999999999999999999975 899999999999
Q ss_pred Eecc
Q 001060 1108 EERR 1111 (1169)
Q Consensus 1108 ~~~r 1111 (1169)
.+++
T Consensus 182 ~~a~ 185 (346)
T TIGR01659 182 SYAR 185 (346)
T ss_pred eccc
Confidence 8665
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=131.49 Aligned_cols=398 Identities=14% Similarity=0.081 Sum_probs=253.5
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...++..|-+++++++.-.-+|..|+.++.... +..+|+++|++++++++.+...|...++.+.+..+++.|..+.-+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 567888999999999999999999999999864 889999999999999999999999999999999999999999766
Q ss_pred HHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-c
Q 001060 161 AVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-P 237 (1169)
Q Consensus 161 aL~~~P~--s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p 237 (1169)
.-+..|- ...-|.+..-++. ..++.-.+..-|+.|+. .++.+..+|....+.+.+.|++..|.++|.++... |
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 6665542 3455777666666 66788889999999998 67778899999999999999999999999999987 5
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH-HHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE-ELEKY 316 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~k~ 316 (1169)
..-+.+++..-.+-... ..+++......+....... .....+ ..+.- +..+.
T Consensus 628 ~s~y~~fk~A~~ecd~G-------kYkeald~l~~ii~~~s~e---~~~q~g-----------------LaE~~ir~akd 680 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNG-------KYKEALDALGLIIYAFSLE---RTGQNG-----------------LAESVIRDAKD 680 (1238)
T ss_pred HhHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH---HHhhhh-----------------HHHHHHHHHHH
Confidence 55555555443322111 1122211111111000000 000000 00000 00000
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHH-----------------------HHcCCh
Q 001060 317 IAVREEMYKKAKE-FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI-----------------------ERDGDF 372 (1169)
Q Consensus 317 i~~~~~~y~~~~~-~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~-----------------------~~~gd~ 372 (1169)
... .-++.+..+ ++..|+.|.-.|. |.. -.+.-.|.-..+.. +..+..
T Consensus 681 ~~~-~gf~~kavd~~eksie~f~~~l~----h~~---~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l 752 (1238)
T KOG1127|consen 681 SAI-TGFQKKAVDFFEKSIESFIVSLI----HSL---QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGAL 752 (1238)
T ss_pred HHH-HHHhhhhhHHHHHHHHHHHHHHH----Hhh---hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccC
Confidence 000 011112211 2222233322222 000 11222333332211 111111
Q ss_pred --HH----HHHHHHHHHHhccCCHHHHHHHHHHHHH----c----CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 373 --NK----VVKLYERCLIACANYPEYWIRYVLCMEA----S----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 373 --~~----a~~lyeraL~~~~~~~e~W~~~a~~l~~----~----g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
++ +...|-+.|.. ..++--|+.++.-+.+ . .+...|+.++.++++.. -++..+|.+++.+ -.-
T Consensus 753 ~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~ 829 (1238)
T KOG1127|consen 753 KKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGI 829 (1238)
T ss_pred cchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hcc
Confidence 11 11122222222 1224567777654333 1 23346888888888877 6788888888876 445
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
|++.-|..+|-+. +...|...-.|.+++.+.....+++-|...|.++..+.|.+ ..-|+.-+.+... .|++-
T Consensus 830 gnva~aQHCfIks-~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n------l~~WlG~Ali~ea-vG~ii 901 (1238)
T KOG1127|consen 830 GNVACAQHCFIKS-RFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN------LVQWLGEALIPEA-VGRII 901 (1238)
T ss_pred chhhhhhhhhhhh-hhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh------hHHHHHHHHhHHH-HHHHH
Confidence 7888888888887 67788888889998888888888889999998888887532 4457777777665 78888
Q ss_pred HHHHHHHHHhhh
Q 001060 519 KARQILVDSLDH 530 (1169)
Q Consensus 519 ~Ar~i~~kAl~~ 530 (1169)
++..+|.-..+.
T Consensus 902 ~~~~lfaHs~el 913 (1238)
T KOG1127|consen 902 ERLILFAHSDEL 913 (1238)
T ss_pred HHHHHHHhhHHh
Confidence 888888774443
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=151.69 Aligned_cols=74 Identities=34% Similarity=0.481 Sum_probs=66.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcC--CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++|||+||+.++|+++|+++|++| |.|++|++ .++||||+|++.++|.+||+. |+..|+|+.|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4789999999999999999999999 99998653 246999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=132.35 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=73.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
|..-++||||||++.++.+.|+++|++||+|.+..| |.|+.+|++||||||+|.|.++|.+|++...-.|+||+..|..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavv-itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVV-ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEE-EeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 445689999999999999999999999999999854 7799999999999999999999999999878899999988875
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-10 Score=132.51 Aligned_cols=318 Identities=14% Similarity=0.043 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001060 119 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197 (1169)
Q Consensus 119 ~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl 197 (1169)
++...++++++.+|+|+..-+.++-.+..+++.+.|.....++|... -++...|..++-.+. ..+++..|..+.+.++
T Consensus 462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-a~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-AQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777773 345666766665555 6667777777777777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCC
Q 001060 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277 (1169)
Q Consensus 198 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~ 277 (1169)
.-.|. .+.+-+.-+..+...++.+.+.......| .+|+.-..+.... ++... ....
T Consensus 541 ~E~~~---N~~l~~~~~~i~~~~~~~e~~l~t~~~~L--------~~we~~~~~q~~~--------~~g~~-----~~lk 596 (799)
T KOG4162|consen 541 EEFGD---NHVLMDGKIHIELTFNDREEALDTCIHKL--------ALWEAEYGVQQTL--------DEGKL-----LRLK 596 (799)
T ss_pred HHhhh---hhhhchhhhhhhhhcccHHHHHHHHHHHH--------HHHHhhhhHhhhh--------hhhhh-----hhhh
Confidence 65554 23344445555555566666655554443 2232111110000 00000 0000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh----
Q 001060 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV---- 353 (1169)
Q Consensus 278 ~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~---- 353 (1169)
..... + + ..+++....-+++..... -......++..+ |.+++.|-..
T Consensus 597 ~~l~l---a-----~------------~q~~~a~s~sr~ls~l~a-------~~~~~~~se~~L--p~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 597 AGLHL---A-----L------------SQPTDAISTSRYLSSLVA-------SQLKSAGSELKL--PSSTVLPGPDSLWY 647 (799)
T ss_pred ccccc---C-----c------------ccccccchhhHHHHHHHH-------hhhhhccccccc--CcccccCCCCchHH
Confidence 00000 0 0 001111111112111100 011112244443 3566665432
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
....+|...++...+.+..+.+......+-+.++..+..|+..+..++.+|..++|...|.-|+.+. |+++.+...+|.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3456788888887888999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHcCCHHHHHH--HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 434 FKEQNGDIDGARA--AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 434 ~~e~~g~~~~A~~--~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++.+.|+-.-|.+ ++..+ ++++|.+.++|+.++.+...+|+.++|-.+|..|+++...
T Consensus 727 ~lle~G~~~la~~~~~L~da-lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDA-LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHhCCcchHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9999886655554 88888 8999999999999999999999999999999999999854
|
|
| >KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=126.57 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=72.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
-.+|-|-||.+.++.++|+.+|++||.|-+|-| -+++.|+.++|||||-|.+..+|+.|+++ .|.+|+|+.|+|..++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Prdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceec-ccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 478999999999999999999999999999854 57888999999999999999999999988 7999999999999876
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=133.73 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+|.|.+|.-+||.++..+|.+.++|.+++......++=..|+..++|||++.|.|.++.+.++--+. ..+.-..|...+
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999998887776 556667788888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
++.|...+.. .|..-.. ..+....- ...+ ....+..+-..|.+....++.
T Consensus 377 ~~Wi~~~p~y-----~~l~~a~---~~~~~~~~----~s~~--~~~~l~~i~~~fLeaa~~~~~---------------- 426 (579)
T KOG1125|consen 377 DKWIRNKPKY-----VHLVSAG---ENEDFENT----KSFL--DSSHLAHIQELFLEAARQLPT---------------- 426 (579)
T ss_pred HHHHHhCccc-----hhccccC---ccccccCC----cCCC--CHHHHHHHHHHHHHHHHhCCC----------------
Confidence 8888743221 1111100 00000000 0000 000111111111111000000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
+ ++ -++...++.+|.-.++|++++.+|+.+|. .+|
T Consensus 427 -----~-------~D-------------------------pdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~P 461 (579)
T KOG1125|consen 427 -----K-------ID-------------------------PDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKP 461 (579)
T ss_pred -----C-------CC-------------------------hhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCC
Confidence 0 00 01344456677778888888888888887 566
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
.+..+|.+|+..+-...+.++|+..|.|||.+-|.+..+|+.++..+...|.+++|...|-+||.+.
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 7778888888776666677788888888888888888888888887777888888888888887766
|
|
| >KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-12 Score=118.23 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=71.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++||||||++-++|++|.++|++||+|+.| |+--++-+..+.||+||+|-+.++|..|+.- +++.++.+.|+|++.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri-iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI-IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee-EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999997 3334666667889999999999999999988 899999999999986
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-09 Score=111.81 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANM 469 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~ 469 (1169)
.++..+++-+....+++.|+..+.||++.. |++..+-+.+++++...|++..|.+.++++ .+.+|+.. ++.-.+...
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v-~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERV-LEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHH-HHhChHHHHHHHHHHHHH
Confidence 456677777777788999999999999977 889999999999999999999999999998 77788865 456777788
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
+..+|+.++.+..+.++++..++. .+-..++++.....| .+.|...+.+-|...|+-..++ .++.+...-.
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~-------~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~da 329 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGA-------DAELMLADLIELQEG-IDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADA 329 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCc-------cHHHHHHHHHHHhhC-hHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccc
Confidence 889999999999999999987642 233344444444355 8899999999998888654444 6666666543
Q ss_pred Ch----hHHHHHHHHHHHHhhcCCC
Q 001060 550 SP----KQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 550 ~~----~~~~~~r~l~eral~~~~~ 570 (1169)
++ ++...++++..+-+...+.
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcCC
Confidence 33 2356677777666665543
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-12 Score=145.81 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+++|||+|||+++++++|+++|++||.|.+++| ++++.+|++||||||+|.+.++|.+||.. +|..|+||.|+|++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i-~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKI-IRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999986 56777999999999999999999999986 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 87653
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-10 Score=121.48 Aligned_cols=313 Identities=10% Similarity=0.036 Sum_probs=225.0
Q ss_pred HHHhCCCCHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 91 IVKANSSDFSAWT---ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 91 al~~nP~d~~aw~---~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
++...|.+.+.|. .+++++.. ..-..-+..++-..+.++|+|..+...+++++...|++++|+..|++.+.++|+
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~--~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNF--KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhc--ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 4455666666665 33333332 233445667788888999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHH
Q 001060 168 SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS 247 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~ 247 (1169)
.+.-.-.|+-++- ..|+++..-.+..+.+..... ...-|..-+..+...+++.+|.-.=.+++.....++..+.-+
T Consensus 265 ~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~---ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilK 340 (564)
T KOG1174|consen 265 NVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKY---TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILK 340 (564)
T ss_pred hhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhc---chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhc
Confidence 9999999988877 889998888887777763311 223354444444444566666665555555544433332221
Q ss_pred HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHH
Q 001060 248 FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKA 327 (1169)
Q Consensus 248 ~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~ 327 (1169)
+......
T Consensus 341 -------------------------------------------------------------------------G~lL~~~ 347 (564)
T KOG1174|consen 341 -------------------------------------------------------------------------GRLLIAL 347 (564)
T ss_pred -------------------------------------------------------------------------cHHHHhc
Confidence 2344566
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH-HHHH-HcCC
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV-LCME-ASGS 405 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a-~~l~-~~g~ 405 (1169)
++.++|+..|+.++. +-|..++.+.-++..|...|.+.+|+.+-..++...+.+.....-++ ..+. ..--
T Consensus 348 ~R~~~A~IaFR~Aq~--------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred cchHHHHHHHHHHHh--------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh
Confidence 777778888888887 77777888888888888888888888888888888887776665554 2222 2223
Q ss_pred hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 406 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 406 ~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
-++|.+.+++++++. |....+-...|.+...-|.+..+.+++++. +...|+ ..++..++++..-.+.+.++.+.|..
T Consensus 420 rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~-L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKH-LIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHH-Hhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 477888888888876 777777777888888888888888888887 444553 45777788888888888888888888
Q ss_pred HHHhhhCC
Q 001060 486 AIAIEKGK 493 (1169)
Q Consensus 486 Al~~~~~~ 493 (1169)
|+.++|.+
T Consensus 497 ALr~dP~~ 504 (564)
T KOG1174|consen 497 ALRQDPKS 504 (564)
T ss_pred HHhcCccc
Confidence 88888753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-08 Score=115.90 Aligned_cols=392 Identities=11% Similarity=0.092 Sum_probs=236.4
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
+.+-++.++.+|+..|...++.-..+-.+..+| +.++|...-..++.-++.+.-=|.-++.+....++|++|+++|+.
T Consensus 23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg--~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG--KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHhHHHHHHHHHHhCCccchhHHhccchhhccc--chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 556677788888888888888887777777764 778888888888888888888888888888888888888888888
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc---
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP--- 237 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p--- 237 (1169)
||+..|+|..+|..++-+-. +.++++-....-.+.++..+ ....-|..|+.-....+++..|..+.....+.-
T Consensus 101 Al~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~---~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 101 ALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRP---SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 88888888888888776666 77777777777666666333 244567777766666677777777766665542
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i 317 (1169)
+.....-+.....+.+..- .+....+++. ..+.+.. .....--.+.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~-~E~g~~q~al-------e~L~~~e--------------------------~~i~Dkla~~ 222 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQIL-IEAGSLQKAL-------EHLLDNE--------------------------KQIVDKLAFE 222 (700)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHcccHHHHH-------HHHHhhh--------------------------hHHHHHHHHh
Confidence 2211111111111100000 0000001110 0000000 0000112255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhccCC-------
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI-ERDGDFNKVVKLYERCLIACANY------- 389 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~-~~~gd~~~a~~lyeraL~~~~~~------- 389 (1169)
..+..++.+.+++++|...|...|.| +|+++.-+..|...+ .-.+..+....+|.+.-...|.+
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp 294 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP 294 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc
Confidence 66678899999999999999999984 555554444443332 12223333335666533332211
Q ss_pred ------HHHHHHHHHHH---HHcC-------------ChHHHHHHHHHHHHHhh------------------ccChHHHH
Q 001060 390 ------PEYWIRYVLCM---EASG-------------SMDLAHNALARATHVFV------------------KRLPEIHL 429 (1169)
Q Consensus 390 ------~e~W~~~a~~l---~~~g-------------~~e~A~~vl~rAl~~~~------------------p~~~~l~~ 429 (1169)
.++-..+..|+ .+.| +... ..++++.+.-+. |-...+|.
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 12222222222 2222 1111 124444333221 01123443
Q ss_pred H--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001060 430 F--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 430 ~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a 507 (1169)
. +++-....|+++.|...++.+ +.-.|...+.++..+.+..-.|++++|-.+++.+.+.+..+ -.+-..++
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~A-IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------R~INsKcA 446 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLA-IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------RAINSKCA 446 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------HHHHHHHH
Confidence 3 345556788888888888888 77788888888888888888888888888888888876321 11223577
Q ss_pred HHHHHHhCCHHHHHHHHHHHhh
Q 001060 508 RFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
.+..+ .+.+++|.++..+--.
T Consensus 447 KYmLr-An~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 447 KYMLR-ANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHH-ccccHHHHHHHHHhhh
Confidence 77776 7778888888765544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-09 Score=126.34 Aligned_cols=361 Identities=12% Similarity=0.051 Sum_probs=199.6
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 159 (1169)
....++..|+.+++.+|.|++.|..|++.|... |++..|.++|.++..+.|++.-.-++-+-++...|++.++...++
T Consensus 577 n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s--Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES--GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc--CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 466889999999999999999999999999996 599999999999999999998888888999999999999999998
Q ss_pred HHHhccCCC----HHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHhcC----CC-CCCHHHHHHHHHHHHHhhhHHHHHH
Q 001060 160 RAVQGVTYS----VDIWLHYCIFAIN--TYGDPETIRRLFERGLAYVG----TD-YLSFPLWDKYIEYEYMQQEWSRVAM 228 (1169)
Q Consensus 160 raL~~~P~s----~~lw~~y~~~~~~--~~~~~e~Ar~~~erAl~~~g----~d-~~s~~lw~~y~~~e~~~~~~~~a~~ 228 (1169)
..+...... .++--.+++.... ..|-..++...+++.++.+- .+ ..+...|..... ..+-
T Consensus 655 ~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd---------ac~~ 725 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD---------ACYI 725 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH---------HHHH
Confidence 887765322 2333333333221 11222334444444443221 10 112223333222 1111
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcc
Q 001060 229 IYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 308 (1169)
Q Consensus 229 iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 308 (1169)
.++....+|..++..++. ++++....+. +.+ ...+..+.+..-..... .+ .+
T Consensus 726 f~q~e~~~vn~h~l~il~--~q~e~~~~l~---~~d-~l~Lg~~c~~~hlsl~~------------------~~----~~ 777 (1238)
T KOG1127|consen 726 FSQEEPSIVNMHYLIILS--KQLEKTGALK---KND-LLFLGYECGIAHLSLAI------------------HM----YP 777 (1238)
T ss_pred HHHhcccchHHHHHHHHH--HHHHhcccCc---chh-HHHHHHHHhhHHHHHhh------------------cc----ch
Confidence 111111122222211111 1121111100 000 00000000000000000 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001060 309 EAEELEKYIAVREEMYKKA-KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 387 (1169)
Q Consensus 309 ~~~~~~k~i~~~~~~y~~~-~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~ 387 (1169)
=......|+..-. ...++ .+-..+|.++.++|+ ++.++...|..++-. -..|++.-+...|-+.+...|
T Consensus 778 WyNLGinylr~f~-~l~et~~~~~~Ai~c~KkaV~--------L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep 847 (1238)
T KOG1127|consen 778 WYNLGINYLRYFL-LLGETMKDACTAIRCCKKAVS--------LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP 847 (1238)
T ss_pred HHHHhHHHHHHHH-HcCCcchhHHHHHHHHHHHHH--------HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc
Confidence 0000011110000 00011 123567778888887 677777777777655 222555555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH-----------------
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL----------------- 450 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~----------------- 450 (1169)
.+.-.|..++.+...+.+++-|..+|.++..+. |.+..-|+-.+.+.+..|++-++..+|..
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 666666666665555666666666666666655 55666666666666666655555444431
Q ss_pred ----------------------H---------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 451 ----------------------V---------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 451 ----------------------a---------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+ +..-+|++..++...+....+++.+..|..++.++|.+.
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglL 997 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLL 997 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 234477778888888888888888988888888887654
|
|
| >KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=123.29 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=76.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+..+|-|.||+.++++++|+++|.+||.|.++- +.+++.||.+||||||.|.+.++|.+||.. ||+-++.-.|+||++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy-lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVY-LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeE-EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 568899999999999999999999999999985 588999999999999999999999999987 899999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=123.55 Aligned_cols=256 Identities=18% Similarity=0.231 Sum_probs=182.1
Q ss_pred hhHHHHHHHHHHHHHhC---CC----C--HHHHH-HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Q 001060 115 DNIVKIRRVYDAFLAEF---PL----C--YGYWK-KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 184 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~---P~----~--~~~W~-~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~ 184 (1169)
+++.+|.......++.. |. | ..+|+ .++..++++|-+.+|++-|+..|...| .+|.+..+.+.+. ...
T Consensus 193 nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~-rid 270 (478)
T KOG1129|consen 193 NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQ-RID 270 (478)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHH-Hhc
Confidence 58888886666555432 21 2 23443 468899999999999999999999985 7888888888887 788
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHH
Q 001060 185 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264 (1169)
Q Consensus 185 ~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 264 (1169)
.++.|..+|..+|+..+.+ ..+...-.+..+.+++.+.+.++|+++|+..+.+++.+-
T Consensus 271 QP~~AL~~~~~gld~fP~~---VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA------------------- 328 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFD---VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA------------------- 328 (478)
T ss_pred cHHHHHHHHhhhhhcCCch---hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee-------------------
Confidence 9999999999999976653 445555566667778889999999998876444322210
Q ss_pred HHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001060 265 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344 (1169)
Q Consensus 265 ea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~ 344 (1169)
. |-..
T Consensus 329 ---------------------------------------------------c------------------------ia~~ 333 (478)
T KOG1129|consen 329 ---------------------------------------------------C------------------------IAVG 333 (478)
T ss_pred ---------------------------------------------------e------------------------eeec
Confidence 0 0000
Q ss_pred CcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh--c
Q 001060 345 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--K 422 (1169)
Q Consensus 345 ~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--p 422 (1169)
|| + .++++-|+..|+|.|..-..+++++..++.+..--+++|-++..|+||+.... .
T Consensus 334 yf-------------------Y--~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 334 YF-------------------Y--DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred cc-------------------c--CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 01 0 23455567777777777777777777777776666777777777777776542 1
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 423 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 423 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
...++|+.++.+....||+.-|..+|.-+ +..++++.+.+.+++.+..|.|+++.|+++|..|-...|
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrla-L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLA-LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHH-hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 24567777777777777777777777776 555777777777777777777777777777777776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-09 Score=118.86 Aligned_cols=361 Identities=12% Similarity=0.066 Sum_probs=228.6
Q ss_pred CCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-------
Q 001060 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG------- 149 (1169)
Q Consensus 77 ~~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~------- 149 (1169)
+.+.+..+++...+++++||....+|..++..+..+ |++++|+..|++.|+.+|+|..+...+++.+....
T Consensus 48 ~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l--g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~ 125 (539)
T KOG0548|consen 48 SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL--GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFT 125 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc--ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhcc
Confidence 345577889999999999999999999999998886 59999999999999999999999888888772220
Q ss_pred ----------C-------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHh--cCCCC----
Q 001060 150 ----------S-------MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI--RRLFERGLAY--VGTDY---- 204 (1169)
Q Consensus 150 ----------~-------~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~A--r~~~erAl~~--~g~d~---- 204 (1169)
+ .+.+.......++..|.++.+.+. -..++...+..-.+ ...+...... .+..+
T Consensus 126 ~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 204 (539)
T KOG0548|consen 126 KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQE 204 (539)
T ss_pred CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCccccc
Confidence 0 111222222333334444433333 11111111100000 0000000000 00000
Q ss_pred ------CCHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc-CCCccccCHHHH
Q 001060 205 ------LSFPL-----------WDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS-RPLSELRTAEEV 266 (1169)
Q Consensus 205 ------~s~~l-----------w~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~eea 266 (1169)
..... ....+.-..+...+..+.+.|..++++. ..+..+.+....+... .-...+...+.+
T Consensus 205 ~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a 283 (539)
T KOG0548|consen 205 HNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKA 283 (539)
T ss_pred CCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence 00000 0011111111245677778888887775 4443333322211110 000000011111
Q ss_pred HHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001060 267 DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYF 346 (1169)
Q Consensus 267 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~ 346 (1169)
.. .- -....+...+.+.+...+..|.+.+.++.++..|+++|..
T Consensus 284 ~E-----------------------------~g----re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte--- 327 (539)
T KOG0548|consen 284 VE-----------------------------VG----RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE--- 327 (539)
T ss_pred HH-----------------------------Hh----HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh---
Confidence 00 00 0001122233445555677888889999999999998762
Q ss_pred ccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 347 HVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 347 ~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
|.. -+.+.+....++++...++..-..|.-.+--..-+.-+.+.|++..|+..|.+||... |++..
T Consensus 328 ~Rt-------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 328 HRT-------------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hcC-------------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 222 2334455667778888888777777665555555777778899999999999999988 99999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+|...|.++.+.|++..|++-.+++ ++++|.....|++-+.++.-+.++++|...|.++++.+|.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~-ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKC-IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999997 8999999999999999999999999999999999999864
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-09 Score=122.17 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccCC
Q 001060 311 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANY 389 (1169)
Q Consensus 311 ~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g-d~~~a~~lyeraL~~~~~~ 389 (1169)
+...+.+.....++...+..++|+..++++|. ++|.+..+|......+...+ ++++++..+++++..+|.+
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~--------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIR--------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 34445666667788888899999999999999 89999999999988888887 6799999999999999999
Q ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSM--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 467 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~--e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 467 (1169)
..+|...+.++.+.+.. +++..++++++++. |++..+|...+.++...|+++++++.+.++ ++++|.+..+|..++
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~-I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQL-LEEDVRNNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHCCCchhHHHHHH
Confidence 99999999888887763 67889999999988 899999999999999999999999999998 889999999999999
Q ss_pred HHHHHc---CCH----HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhhcCCCHHH
Q 001060 468 NMERRL---GNL----EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 468 ~~e~r~---g~~----e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
.+..+. |.+ ++...+..++|...|.+ ...|..+..++... .++..+|...+.+++...|.+...
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 887665 333 56788888999998754 34776665554431 234567999999999988988877
Q ss_pred HHHHHHhHh
Q 001060 538 LEALIHFES 546 (1169)
Q Consensus 538 ~~~~a~~E~ 546 (1169)
+..++++-.
T Consensus 258 l~~l~d~~~ 266 (320)
T PLN02789 258 LSDLLDLLC 266 (320)
T ss_pred HHHHHHHHH
Confidence 776666554
|
|
| >KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=128.44 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=69.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|+|.|||+...+.||+.+|.+||+|.+|.|+.-++ | +||||||+|++.++|++|-+. +|..|.||+|.|..+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--G-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--G-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--C-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 48999999999999999999999999999998755444 2 799999999999999999987 8999999999998765
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 4
|
|
| >PF00076 RRM_1: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=105.66 Aligned_cols=69 Identities=35% Similarity=0.566 Sum_probs=62.6
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
|||+|||.++|+++|+++|++||.|..+.+.. + .+++.+|||||+|++.++|.+|++. ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~-~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR-N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE-E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc-c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999876533 3 5678899999999999999999985 99999999885
|
(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A .... |
| >PLN03120 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-11 Score=127.49 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=69.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||+.+|+++|+++|+.||.|.+|.| ++++. .+|||||+|++.+++..||.++|..|+|+.|+|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 489999999999999999999999999999876 44432 46899999999999999998899999999999999875
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=140.41 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=74.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
..+|||+|||.++++++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|.+||+. ++..|.|+.|+|++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i-~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKL-VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEE-EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 479999999999999999999999999999986 66788899999999999999999999976 8999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >PLN03213 repressor of silencing 3; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-11 Score=132.04 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=68.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCH--HHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI--SGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~--~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
.+.+||||||++.+++++|+.+|+.||.|++|.|. +.+| ||||||+|.+. .++.+||.. +|..+.||.|+|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 56899999999999999999999999999998763 5566 89999999987 789999987 8999999999999
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-08 Score=105.34 Aligned_cols=250 Identities=11% Similarity=0.056 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
++.+|+..++.+.||+.-...+++|-+ ...+..-+...++.-++..|-+++|..+|.......-.-......+..+
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~I 150 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNI 150 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 356677777888888887777775432 2234445556667666788889999999988776555666788888888
Q ss_pred HHHcCChHHHHHHHHHHHHHhhcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 400 MEASGSMDLAHNALARATHVFVKR----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
|....++++|+++-++..++...+ ....+..+|..+....+.+.|+..+.++ .+.+|.+..+=+.+++++...|+
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-lqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-LQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhhCccceehhhhhhHHHHhccc
Confidence 888889999999998887765221 1234445566666678999999999999 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHH
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 555 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~ 555 (1169)
+..|.+.++++++.++. -++++...+...+.. .|+.++.+..+.++.+.++.......-+-..|...| ++
T Consensus 230 y~~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~~-lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G----~~ 299 (389)
T COG2956 230 YQKAVEALERVLEQNPE-----YLSEVLEMLYECYAQ-LGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG----ID 299 (389)
T ss_pred hHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC----hH
Confidence 99999999999999863 346666666665444 999999999999999999876655543433443333 45
Q ss_pred HHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 001060 556 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF 594 (1169)
Q Consensus 556 ~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~ 594 (1169)
.++..+-+-|...|+. ..+-+++++.-.-
T Consensus 300 ~Aq~~l~~Ql~r~Pt~----------~gf~rl~~~~l~d 328 (389)
T COG2956 300 AAQAYLTRQLRRKPTM----------RGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhhCCcH----------HHHHHHHHhhhcc
Confidence 5666666666665542 3677788776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-07 Score=104.40 Aligned_cols=441 Identities=15% Similarity=0.091 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH-HHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD-IWLHYCIF 178 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~-lw~~y~~~ 178 (1169)
+.|+.|-.... ++++++|.+...++|...|++......-.-..++.+.|++|.++.+.-....-.++- +-..||.|
T Consensus 14 ~l~t~ln~~~~---~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGK---NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 56666666443 579999999999999999999999888888899999999999776655432222222 45566666
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHH-HHHHHhcCCC
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS-FKEFAASRPL 257 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~-~~~~~~~~~~ 257 (1169)
..+.+|+|...++ |.+.....+-..+.....+++++++|.+||+.++++....++.-... +..-...
T Consensus 91 ---rlnk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--- 158 (652)
T KOG2376|consen 91 ---RLNKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--- 158 (652)
T ss_pred ---HcccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---
Confidence 5688999999888 34555667888999999999999999999999998744433221111 1000000
Q ss_pred ccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 258 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 337 (1169)
Q Consensus 258 ~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~ 337 (1169)
-.+. ......+ .+ ..+.+ .+--..-++...++|.+|++.+
T Consensus 159 ------l~~~-----~~q~v~~-------------------v~------e~sye----l~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 159 ------LQVQ-----LLQSVPE-------------------VP------EDSYE----LLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred ------hhHH-----HHHhccC-------------------CC------cchHH----HHHHHHHHHHhcccHHHHHHHH
Confidence 0000 0000000 00 00111 1111223455667788888888
Q ss_pred HHhhccCCcccCCCCh---------hcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CC-
Q 001060 338 ETAIRRPYFHVKPLSV---------TELENWHNYLD-FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GS- 405 (1169)
Q Consensus 338 e~al~r~~~~v~pl~~---------~~~~~W~~yl~-~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~-g~- 405 (1169)
+.+++- -...+.. .++...+--+. .+...|+.+++..+|..++..++.+..+-.-...-+... ++
T Consensus 199 ~kA~~~---~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 199 EKALRI---CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHH---HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcccc
Confidence 877650 0011110 01111111111 123457777788888888877765553322222111110 00
Q ss_pred --hH-------------HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHH
Q 001060 406 --MD-------------LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANM 469 (1169)
Q Consensus 406 --~e-------------~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~ 469 (1169)
++ -+..++.+... .....++...+.+..-.+..+.++++..+. -...|... .+.+..+..
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~---~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l-p~~~p~~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSK---KQKQAIYRNNALLALFTNKMDQVRELSASL-PGMSPESLFPILLQEATK 351 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-CccCchHHHHHHHHHHHH
Confidence 01 01111111111 112234444444444445555666655543 22233322 233333333
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh-------cCCCHHHHHHHH
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-------VQLSKPLLEALI 542 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~-------~p~s~~l~~~~a 542 (1169)
. +.....++..++...-+.+|.+ ...+.+..+.+... .|+++.|.+++...++. ....+.+.-...
T Consensus 352 ~-~~~~~~ka~e~L~~~~~~~p~~-----s~~v~L~~aQl~is-~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 352 V-REKKHKKAIELLLQFADGHPEK-----SKVVLLLRAQLKIS-QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred H-HHHHHhhhHHHHHHHhccCCch-----hHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 2 2235677777777777766532 12344445555555 89999999999944421 122222222222
Q ss_pred HhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 543 HFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 543 ~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
.+....++ .+.+..++..++..-.... ..+ ..-..+|....+|+..+|+.+...++++...+.+++.
T Consensus 425 ~l~~~~~~---~~~a~~vl~~Ai~~~~~~~-t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 425 ALYYKIKD---NDSASAVLDSAIKWWRKQQ-TGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHhccC---CccHHHHHHHHHHHHHHhc-ccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 22222222 1234455555544321111 011 3445688889999999999999999999998877653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-08 Score=114.08 Aligned_cols=314 Identities=12% Similarity=0.013 Sum_probs=173.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHH
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 171 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~l 171 (1169)
||+..-+|..++.++... ++.+.+.+.|.+++...|.+ .+.+...+......|++++|.+++++++..+|.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 677777888888777664 36666677777777776644 4455556667777788888888888888888877766
Q ss_pred HHH-HHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 001060 172 WLH-YCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFK 249 (1169)
Q Consensus 172 w~~-y~~~~~~-~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~ 249 (1169)
|.. +..+... ..+..+.+.+.++. ..+.++.....+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~---------------------------------- 122 (355)
T cd05804 80 LKLHLGAFGLGDFSGMRDHVARVLPL---WAPENPDYWYLLGMLAF---------------------------------- 122 (355)
T ss_pred HHHhHHHHHhcccccCchhHHHHHhc---cCcCCCCcHHHHHHHHH----------------------------------
Confidence 652 1111110 11222233332222 11222222112222222
Q ss_pred HHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 001060 250 EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKE 329 (1169)
Q Consensus 250 ~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~ 329 (1169)
++...++
T Consensus 123 -------------------------------------------------------------------------~~~~~G~ 129 (355)
T cd05804 123 -------------------------------------------------------------------------GLEEAGQ 129 (355)
T ss_pred -------------------------------------------------------------------------HHHHcCC
Confidence 3334444
Q ss_pred HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcCC
Q 001060 330 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----EYWIRYVLCMEASGS 405 (1169)
Q Consensus 330 ~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~----e~W~~~a~~l~~~g~ 405 (1169)
+++++..|++++. +.|.+...++.++..+...|++++++.+|++++...+..+ ..|..++.++...|+
T Consensus 130 ~~~A~~~~~~al~--------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 130 YDRAEEAARRALE--------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHHHHHHHHh--------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 5555555555555 4455555666666666777777777777777777655332 356677777777888
Q ss_pred hHHHHHHHHHHHHHhhccChHHHH----HHHHHHHHcCCHHHHHHH---HHHHhhhcCCC--hHHHHHHHHHHHHHcCCH
Q 001060 406 MDLAHNALARATHVFVKRLPEIHL----FAARFKEQNGDIDGARAA---YQLVHTETSPG--LLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 406 ~e~A~~vl~rAl~~~~p~~~~l~~----~~a~~~e~~g~~~~A~~~---~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~ 476 (1169)
+++|+.+|++++...+........ .........|....+... .... ....+. .......++......|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA-AWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH-HhhcCcccchHHHHHHHHHHhcCCCH
Confidence 888888887776433101111111 111112223322222222 1111 111111 222334566677778889
Q ss_pred HHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 477 EDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
++|..+++........ .........+.+..+..++. .|+.++|+..+..++..
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~-~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA-EGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 9999999887765432 11001112233444555555 99999999999999854
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-09 Score=116.45 Aligned_cols=199 Identities=12% Similarity=0.054 Sum_probs=158.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCH-
Q 001060 364 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI- 441 (1169)
Q Consensus 364 ~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~- 441 (1169)
..+...+..++|+.++.++|..+|.+..+|...+.++...+ ++++++..++++++.+ |++..+|...+.+..+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34456678899999999999999999999999999999888 6799999999999988 89999999999888888863
Q ss_pred -HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CC-
Q 001060 442 -DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RN- 516 (1169)
Q Consensus 442 -~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~- 516 (1169)
++++.+++++ ++++|.+..+|..++.+....|++++++..++++|+.++.+ ...|.+.+..+.. . |+
T Consensus 124 ~~~el~~~~ka-l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~-~~~l~~~ 195 (320)
T PLN02789 124 ANKELEFTRKI-LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITR-SPLLGGL 195 (320)
T ss_pred hHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHh-ccccccc
Confidence 6789999998 78999999999999999999999999999999999998643 4577776655443 3 22
Q ss_pred ---HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh-hHHHHHHHHHHHHhhcCCCC
Q 001060 517 ---AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 517 ---~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~-~~~~~~r~l~eral~~~~~~ 571 (1169)
.+++.....++|+.+|++...|..+..+....+.. .....+...+++++...+.+
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 35788888999999999999997665555443221 01122455566666654443
|
|
| >PLN03121 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=121.64 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
.+++|||+||++.+|+++|+++|+.||.|.+|+| +++. ..+|||||+|++.+++..|+.++|..|.|+.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I-~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEI-IRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE-ecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4699999999999999999999999999999875 4443 45689999999999999999999999999999998754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-09 Score=116.64 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=139.2
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
|.++...+.+...+..+...|+++.|+..|++++...|.++ +.|+.++.++...|++++|+..|+++++.+ |+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCc
Confidence 46677788899999988999999999999999999998765 688999999999999999999999999988 66665
Q ss_pred ---HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHH
Q 001060 427 ---IHLFAARFKEQN--------GDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLED 478 (1169)
Q Consensus 427 ---l~~~~a~~~e~~--------g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~ 478 (1169)
.++..+.++... |++++|+..|+++ ++.+|++...+ +..+.++.+.|++.+
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 677778777665 7899999999998 77899876554 244566667777777
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
|+..|++++...|+. +..+.+|..++..+.. .|++++|..+++.....+|
T Consensus 185 A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 185 AINRFETVVENYPDT---PATEEALARLVEAYLK-LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHCCCC---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 777777777776532 3345566667766665 7777777777776665554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF14259 RRM_6: RNA recognition motif (a | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=100.86 Aligned_cols=69 Identities=26% Similarity=0.521 Sum_probs=60.3
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
|||+|||+++++++|+++|+.||.|..+.+ ..++. |+++|+|||+|.+.++|.+|+.. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~-~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRL-IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEE-EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEE-Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999764 44554 88999999999999999999998 67999999875
|
k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A .... |
| >KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=107.73 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=77.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..++.|||.++...+++++|.+.|..||+|+.+.+.+ ++.||-.||||.|+|++.+.|++||.. ||..|.|+.|.|++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNL-DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNL-DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecc-ccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3689999999999999999999999999999988655 777999999999999999999999988 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+..+.+
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876543
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=138.48 Aligned_cols=81 Identities=19% Similarity=0.369 Sum_probs=74.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|+.||.|++++| ++++.+|++||||||+|++.++|.+||+. |++.|+|+.|+|.++.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl-~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE-EecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 479999999999999999999999999999875 56777889999999999999999999987 8999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.7e-12 Score=121.64 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
-.++.-|||||||++.|+.||-.+|++||+|..|. ++|++.||+++||||+.|+|..+..-|+.. ||+.|.||.|+|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin-LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN-LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEE-EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44678999999999999999999999999999986 589999999999999999999999999976 8999999999997
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 54
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-09 Score=124.20 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 402 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~ 402 (1169)
.+.+.+...+|.-.||.+|+ .+|...++|..++...-++++-..++..++|||+++|.+.++.+.+|..+..
T Consensus 294 ~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 45567778999999999999 7999999999999887778888899999999999999999999999999988
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---------DIDGARAAYQLVHTETSP--GLLEAIIKHANMER 471 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g---------~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~ 471 (1169)
.|.-..|...|.+=|...+ +..|+..+.-....+ .+....++|-.+ ....| .++++...++.++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea-a~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKP---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA-ARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhHHHHHHHHHHHHHhCc---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHH-HHhCCCCCChhHHhhhHHHHh
Confidence 8877888888888776552 233333322122211 123344556665 34466 68899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh
Q 001060 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~ 551 (1169)
-.++|++|+.||+.||...|++ ..+|..|+-.+.- ..+.++|...|.+||++.|.-...+..++.=-+.+|.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~- 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA- 513 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-
Confidence 9999999999999999998753 5699999988765 6679999999999999999877777666554444444
Q ss_pred hHHHHHHHHHHHHhhc--CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001060 552 KQIDFLEQLVDKFLMS--NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 603 (1169)
Q Consensus 552 ~~~~~~r~l~eral~~--~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v 603 (1169)
.+.+-..|-.||.- .+.++-.. +.....||+..--++...+..+.+..+
T Consensus 514 --ykEA~~hlL~AL~mq~ks~~~~~~-~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 514 --YKEAVKHLLEALSMQRKSRNHNKA-PMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred --HHHHHHHHHHHHHhhhcccccccC-CcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 22233333334332 21111000 112567999999888888877744443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=114.41 Aligned_cols=240 Identities=9% Similarity=-0.045 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE 391 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e 391 (1169)
-||| ...++.|...+-+.+|.+.|...|+. ..-++.+..+...+.+..++.+|+.+|...|...|.+..
T Consensus 223 wwWk--~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 223 WWWK--QQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHH--HHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 3444 34567888888888888889888873 223466777778888899999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+....+.+++..+++++|.++|+++++.+ +.+.+..--.+.-+.-.++.+.|+..|.++ +.+.-.+++++.+.+.+..
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH-HHhcCCChHHHhhHHHHHH
Confidence 99999999999999999999999999988 665554333333334467889999999998 7788888999999999888
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh
Q 001060 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~ 551 (1169)
-.+.+|-+...|++|+...... ....++|.+++.+... .||+.-|...|+-||..++++..-+.+++.++..-|+
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~---~~aaDvWYNlg~vaV~-iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~- 444 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQP---GQAADVWYNLGFVAVT-IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD- 444 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCc---chhhhhhhccceeEEe-ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-
Confidence 8899999999999999876422 2346799999888666 9999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHhhcCCCC
Q 001060 552 KQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 552 ~~~~~~r~l~eral~~~~~~ 571 (1169)
|+.+|+++..+-...|+-
T Consensus 445 --i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 445 --ILGARSLLNAAKSVMPDM 462 (478)
T ss_pred --hHHHHHHHHHhhhhCccc
Confidence 888999999887766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-07 Score=104.56 Aligned_cols=411 Identities=11% Similarity=0.096 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
..+-..+..++. +.+.+..++.+..|+.||...+-.-..+......|+.++|-+...++|...+.|.--|.-|+-+.
T Consensus 9 ~lF~~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 344456666775 68999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH-HHhcCCCc
Q 001060 180 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE-FAASRPLS 258 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~-~~~~~~~~ 258 (1169)
. ...++++|++.|..||.. +.....||....-+-..+++++.....-.+.|+..+.+...|+..... +....-
T Consensus 86 R-~dK~Y~eaiKcy~nAl~~---~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y-- 159 (700)
T KOG1156|consen 86 R-SDKKYDEAIKCYRNALKI---EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY-- 159 (700)
T ss_pred h-hhhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 8 678899999999999993 444788999999888888999999888888998755544333222111 111000
Q ss_pred cccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 338 (1169)
Q Consensus 259 ~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e 338 (1169)
..+ ...+.++.+ +.. +.. +..+.+..+ .+..+..+..+.+.++.+.+.+.
T Consensus 160 -----~~A-------~~il~ef~~--t~~-------------~~~--s~~~~e~se-~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 160 -----KMA-------LEILEEFEK--TQN-------------TSP--SKEDYEHSE-LLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred -----HHH-------HHHHHHHHH--hhc-------------cCC--CHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHH
Confidence 001 001111111 000 000 001111111 12222223344444444444332
Q ss_pred HhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 001060 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME-ASGSMDLAHNALARAT 417 (1169)
Q Consensus 339 ~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~-~~g~~e~A~~vl~rAl 417 (1169)
+.=+ ..-..+..-..-++++++.+++++|..+|.+.|+.+|++.+.+..+-.++. -.+..+.-..+|.+.-
T Consensus 210 ~~e~--------~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 210 DNEK--------QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred hhhh--------HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 2111 111223333445778889999999999999999999999988888877774 2333333335666555
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhh--
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDG-ARAAYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEK-- 491 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~---~e~A~~iy~~Al~~~~-- 491 (1169)
+.+ |...-+...-..++.- .++.. ..+++...+.+-.| .+...+..++..-.. +++-..-|...+.-..
T Consensus 282 ~~y-~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 282 EKY-PRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hcC-cccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 544 3222111111111111 12212 12222222111112 122222222211100 1122222222222110
Q ss_pred -----CCCccCchHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH
Q 001060 492 -----GKEHSQTLPMLYAQY--SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 564 (1169)
Q Consensus 492 -----~~~~~~~~~~l~~~~--a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~era 564 (1169)
++.. +-...+|..| +.-.. ..|+++.|...+..|+.+.|+-..++..=+.+-.-.|+ ++.+-..++++
T Consensus 357 ~~~D~~~~E-~PttllWt~y~laqh~D-~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea 431 (700)
T KOG1156|consen 357 NFLDDGKQE-PPTTLLWTLYFLAQHYD-KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEA 431 (700)
T ss_pred CcccccccC-CchHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Confidence 0000 1123455433 22223 38899999999999999999888887666666665565 55566666666
Q ss_pred hhc
Q 001060 565 LMS 567 (1169)
Q Consensus 565 l~~ 567 (1169)
-..
T Consensus 432 ~el 434 (700)
T KOG1156|consen 432 QEL 434 (700)
T ss_pred Hhc
Confidence 543
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-10 Score=116.28 Aligned_cols=77 Identities=30% Similarity=0.418 Sum_probs=69.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||||++..+|+++|++.|+.||.|.+|+|+- -+||+||.|++.|+|..||.. |+.+|+|+.|++.+-
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-------ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 579999999999999999999999999999988632 358999999999999999976 999999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+....
T Consensus 236 Ke~~~ 240 (321)
T KOG0148|consen 236 KEGDD 240 (321)
T ss_pred ccCCC
Confidence 87544
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-11 Score=121.63 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=79.6
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+|+.|||-.||.+..+.+|-++|-.||.|.+.+|++ |+.|+++||||||.|++..++++||.+ ||+.|+-++|+|.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv-DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee-hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 44789999999999999999999999999999999866 788999999999999999999999988 9999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
.+|++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9999753
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=137.81 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|++|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3479999999999999999999999999999876 56888999999999999999999999976 899999999999854
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-08 Score=103.72 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=165.9
Q ss_pred ChHHHHHHHHHHHHhccC---CHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH
Q 001060 371 DFNKVVKLYERCLIACAN---YPEYWIRYVLCM---EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~---~~e~W~~~a~~l---~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
+.++++.++...+...+. -.+.|.-|=+.+ ...|..+.|..++.+....+ |++..+-.+.|.+++..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 566777777777766443 356776665443 34688999999999999989 99999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 524 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~ 524 (1169)
.++|+.+ ++-+|.+.-++.+...+...+|+--+|++.+...++.+..+ +++|..++.++.. .|++++|.-+|
T Consensus 106 ~e~y~~l-L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~-~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESL-LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLS-EGDFEKAAFCL 177 (289)
T ss_pred HHHHHHH-hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 9999998 67799999999999999999999999999999999999643 7899999999776 99999999999
Q ss_pred HHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001060 525 VDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 525 ~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
+..+-+.|.+..++..|+.+...+|..+++..+|+.|++++..++
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999988888888999999999999765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-08 Score=118.99 Aligned_cols=260 Identities=14% Similarity=0.123 Sum_probs=165.1
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc-
Q 001060 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG--------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV- 200 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~--------~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~- 200 (1169)
.+|.-...-..++..+...|++++|+.+|++||.. +|.=..+...++.+++ ..+++++|..+|++||+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 35666666777899999999999999999999998 5433344444777777 7889999999999999752
Q ss_pred ---C-CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC
Q 001060 201 ---G-TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 276 (1169)
Q Consensus 201 ---g-~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~ 276 (1169)
| +|+....+...+...+...|++++|...+++++++-.. .+.
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~----------~~~------------------------ 318 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK----------LLG------------------------ 318 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH----------hhc------------------------
Confidence 2 44444555666555666789999999999988765322 000
Q ss_pred CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcH
Q 001060 277 PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 356 (1169)
Q Consensus 277 ~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~ 356 (1169)
...+.+...+.-...++...+++++++..|.++++.
T Consensus 319 -------------------------------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i------------- 354 (508)
T KOG1840|consen 319 -------------------------------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI------------- 354 (508)
T ss_pred -------------------------------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------------
Confidence 001111223333334555556666666555554441
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cC---hHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----RL---PEIH 428 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~-~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p----~~---~~l~ 428 (1169)
|.+++...- .-..+...++.++...|++++|.+.|++|+++... .. ....
T Consensus 355 ----------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 355 ----------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred ----------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 222221111 23456667777777777777777777777766511 11 1222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 429 LFAARFKEQNGDIDGARAAYQLV------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
..+|..+.+.+.+.+|..+|.++ +-.-.|+....+.+++.++.++|++++|+.+-++++...
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 23344446666666666666654 222356667779999999999999999999999888543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-07 Score=104.08 Aligned_cols=437 Identities=11% Similarity=0.071 Sum_probs=248.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
++.+.++....+.+...|+|.++..--.-.+-+ .+.+++|.++.++-....-.+ .+.+.-+-++.+++..|+|.+.+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq--~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ--LDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh--hhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 557889999999999999999998844444444 357888875544433322222 23367777889999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
+ .+ .+.+..+...+++.+. .++++++|..+|+..++..-.+. ...+-..++. .+.-..+. +.++.-..|.
T Consensus 103 ~-~~--~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~-d~~~r~nl~a----~~a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-GL--DRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQ-DEERRANLLA----VAAALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-cc--cccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHH----HHHhhhHH-HHHhccCCCc
Confidence 8 44 3456778888999988 89999999999999988433221 1122111111 11111122 3444445577
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH----hhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV----AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
..++.+|+..+.++....+.. |.++.... ...+.+.... .|++ .+.+.
T Consensus 173 ~syel~yN~Ac~~i~~gky~q------A~elL~kA~~~~~e~l~~~d~~------------eEei----------e~el~ 224 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQ------AIELLEKALRICREKLEDEDTN------------EEEI----------EEELN 224 (652)
T ss_pred chHHHHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHhhcccccc------------hhhH----------HHHHH
Confidence 789999999888876544332 22111111 1111111000 0000 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHH-HHHHHHHcCChH--HHHHHHHH--------HH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN-YLDFIERDGDFN--KVVKLYER--------CL 383 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~-yl~~~~~~gd~~--~a~~lyer--------aL 383 (1169)
-+...+.-++...++-+++...|...|++ .|.|.....+..+ ++.+ ....++- .++..++. ++
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~-----~~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l 298 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKR-----NPADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLL 298 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh-----cCCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHH
Confidence 12222344677888999999999999985 3444332322222 2222 1111111 12222222 11
Q ss_pred Hhcc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH----HHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 384 IACA--NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL----FAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 384 ~~~~--~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~----~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
...- .-..|....+.+....+..+.+++...+ .++..|...+ ..+....+. ...+|..++... .+..|
T Consensus 299 ~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~----lp~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~-~~~~p 372 (652)
T KOG2376|consen 299 SKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS----LPGMSPESLFPILLQEATKVREK-KHKKAIELLLQF-ADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh----CCccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHH-hccCC
Confidence 1111 1112344444444445555555544433 3334433222 222222222 567778888775 56678
Q ss_pred Ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc----
Q 001060 458 GL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV---- 531 (1169)
Q Consensus 458 ~~-~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~---- 531 (1169)
.. ..+.+..+.+....|+++.|+.++...+..-...- .....|.+ +.++.+++...++.+.|..++..|+...
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~-V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT-VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH-HHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 76 66788889999999999999999994432111000 00112333 3444555554777888888888888853
Q ss_pred C---CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 532 Q---LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 532 p---~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
+ .-..+|...+.|++..|. .+.+.++++..+..++.+.
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGN---EEEASSLLEELVKFNPNDT 492 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHHHHhCCchH
Confidence 2 223566788999999887 4557778888888666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=113.08 Aligned_cols=123 Identities=14% Similarity=0.065 Sum_probs=113.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCC--HHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGS--MDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~-e~~~~~--~e~A~ 155 (1169)
.++...+..|+++|+.+|.|.++|..|+..+... +++++|..+|++++...|++..+|..++.. +...|+ +++|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4467889999999999999999999999999885 599999999999999999999999999996 467777 59999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
++|+++|+.+|.+++.|..++..+. ..|++++|+..|+++++..+.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999888 89999999999999999887754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-07 Score=105.14 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=117.7
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh----H
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----E 426 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~----~ 426 (1169)
.++.....+..++..+...|++++++..+++++...|.+..++..++.++...|++++|+..|++++... +..+ .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCCcchhHH
Confidence 4455555555666777899999999999999999999999999999999999999999999999999876 3222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC--ChHHHHHHH---HHHHHHcCCHHHHHH---HHHHHHHhhhCCCccCc
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSP--GLLEAIIKH---ANMERRLGNLEDAFS---LYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P--~~~~~~~~~---a~~e~r~g~~e~A~~---iy~~Al~~~~~~~~~~~ 498 (1169)
.|..++.++...|++++|+.+|+++ ....| ......... .......|....+.. +........+. ..
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~----~~ 262 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTH-IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD----HG 262 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc----cc
Confidence 5667899999999999999999997 44444 222111011 111122233222222 22222111111 11
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
........++.+.. .|+.+.|..+++......
T Consensus 263 ~~~~~~~~a~~~~~-~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 263 LAFNDLHAALALAG-AGDKDALDKLLAALKGRA 294 (355)
T ss_pred chHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 22333456666555 889999999998887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=112.94 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
+.....+.++... |++++|...+++.-..-.+...+....|++++++|++++|..+|..+|..+|+|.+.+..|....
T Consensus 5 E~lLY~~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4445556666664 69999999999999999999999999999999999999999999999999999998888887776
Q ss_pred Hh----hcCCHHHHHHHHHHHHHhc
Q 001060 180 IN----TYGDPETIRRLFERGLAYV 200 (1169)
Q Consensus 180 ~~----~~~~~e~Ar~~~erAl~~~ 200 (1169)
.- ...+.+....+|+......
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y 107 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY 107 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC
Confidence 31 1124566666777655533
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-08 Score=115.60 Aligned_cols=249 Identities=15% Similarity=0.163 Sum_probs=181.3
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 421 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~--------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~- 421 (1169)
.+|......+.++..+...|++++|+.++++||.. ++.-...-..+|.+|..++++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777777888889999999999999999998 444445556689999999999999999999999874
Q ss_pred ---cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001060 422 ---KR---LPEIHLFAARFKEQNGDIDGARAAYQLVH-------TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 488 (1169)
Q Consensus 422 ---p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-------~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~ 488 (1169)
++ ...++..++.++...|++++|+.++++++ ....|.....+...+.++...+++++|+.+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 22 34678888999999999999999888872 122344555678888888899999999999999998
Q ss_pred hhhC--CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc----C-----CCHHHHHHHHHhHhhCCChhHHHHH
Q 001060 489 IEKG--KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV----Q-----LSKPLLEALIHFESIQSSPKQIDFL 557 (1169)
Q Consensus 489 ~~~~--~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~----p-----~s~~l~~~~a~~E~~~~~~~~~~~~ 557 (1169)
+... ..+....+.++.+++.+++. .|++++|+++|++|+++. . ....+|.--..++.. .. +..+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~---~~~a 428 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KK---YEEA 428 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-cc---cchH
Confidence 7541 11123456789999999887 999999999999999964 1 123455432223222 22 3335
Q ss_pred HHHHHHHhhc----CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 558 EQLVDKFLMS----NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 558 r~l~eral~~----~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
..+|++++.. +++.+ +-...+.....-.+..|+.+.+.++..+....
T Consensus 429 ~~l~~~~~~i~~~~g~~~~------~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHP------DVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHHhCCCCC------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5566555332 23333 12345666666778889988888888777644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-09 Score=111.22 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH-HHcCC--HHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGD--IDGAR 445 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~-e~~g~--~~~A~ 445 (1169)
.++.++++..++++|..+|.+.+.|+.++.++...|++++|..+|++++.+. |+++.++..+|.++ ...|+ .++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4567889999999999999999999999999999999999999999999988 89999999999965 67777 59999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
.+|+++ ++++|++..+++.++..+.++|++++|+..|+++++..+..
T Consensus 131 ~~l~~a-l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKA-LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHH-HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999998 88999999999999999999999999999999999998753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-09 Score=105.16 Aligned_cols=122 Identities=14% Similarity=-0.027 Sum_probs=99.6
Q ss_pred HHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 337 ~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
|+++|+ ++|.. |..++......|++++++..|++++...|.+.++|+.++.++...|++++|...|+++
T Consensus 16 ~~~al~--------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 16 LKQLLS--------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHH--------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 667766 56553 5566666678888888888888888888888888888888888888888888888888
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+.+. |+++..|+.++.++...|++++|+..|.++ +++.|++...|...+....
T Consensus 85 l~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A-l~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA-IKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHH
Confidence 8876 788888888888888888888888888887 7788888888877666553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-08 Score=119.86 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=125.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC
Q 001060 127 FLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS 206 (1169)
Q Consensus 127 ~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s 206 (1169)
+....|.+..+|..++..+...+++++|+.+++.++..+|.+..+|+..+.++. ..++...+.-+ +++...+.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~--- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQN--- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccc---
Confidence 345789999999999999999999999999999999999999999998888666 55665555444 555433321
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhc
Q 001060 207 FPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKA 286 (1169)
Q Consensus 207 ~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~ 286 (1169)
.++..+.-+|.+++..+
T Consensus 97 --------------~~~~~ve~~~~~i~~~~------------------------------------------------- 113 (906)
T PRK14720 97 --------------LKWAIVEHICDKILLYG------------------------------------------------- 113 (906)
T ss_pred --------------cchhHHHHHHHHHHhhh-------------------------------------------------
Confidence 12222222222221111
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHH
Q 001060 287 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366 (1169)
Q Consensus 287 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~ 366 (1169)
.+..+.+.++.++
T Consensus 114 -------------------------------------------------------------------~~k~Al~~LA~~Y 126 (906)
T PRK14720 114 -------------------------------------------------------------------ENKLALRTLAEAY 126 (906)
T ss_pred -------------------------------------------------------------------hhhHHHHHHHHHH
Confidence 1122455666777
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
.+.|+.+++..+|++||..+|+++.+...||.+|... ++++|+..+.+|+.++- ..+++.+++.
T Consensus 127 dk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i---------------~~kq~~~~~e 190 (906)
T PRK14720 127 AKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI---------------KKKQYVGIEE 190 (906)
T ss_pred HHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH---------------hhhcchHHHH
Confidence 7778888888888888888888888888888777777 78888888877776531 2235555666
Q ss_pred HHHHHhhhcCCChHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~ 466 (1169)
+.++. .+.+|++.+..+..
T Consensus 191 ~W~k~-~~~~~~d~d~f~~i 209 (906)
T PRK14720 191 IWSKL-VHYNSDDFDFFLRI 209 (906)
T ss_pred HHHHH-HhcCcccchHHHHH
Confidence 66665 45566655544433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-08 Score=123.92 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=131.0
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
.+...+..+.+++...+.|.++++..++++|+..+|.+..+++.++..|.+.+++++|+..+++++... |++...++.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344578899999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
|.++.+.|++++|..+|+++ +..+|++..+|+.++..+...|+.++|...|++|++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~-~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERL-SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999998 557999999999999999999999999999999999874
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=117.26 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+++||.|||+++.+.+|+++|. +.|+|..|.++. ...|+.||||.|||++++.+++|++. +.+.++||.|+|.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~--D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF--DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec--ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 347799999999999999999995 899999987544 44689999999999999999999988 89999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
.+.
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=111.83 Aligned_cols=276 Identities=13% Similarity=0.061 Sum_probs=194.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+.++..|.+.|..++..+|++..||-.-+..++..++|+.+.--.++.+.+.|....-...-.+... ..++..+|.+.|
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~-a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL-ALSDLIEAEEKL 140 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh-hhHHHHHHHHHh
Confidence 3589999999999999999999999999999999999999999999999987654432222222222 222233333332
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
+ +.. . .....+...+++++...
T Consensus 141 ~-----------~~~---~--------~~~anal~~~~~~~~s~------------------------------------ 162 (486)
T KOG0550|consen 141 K-----------SKQ---A--------YKAANALPTLEKLAPSH------------------------------------ 162 (486)
T ss_pred h-----------hhh---h--------hHHhhhhhhhhcccccc------------------------------------
Confidence 2 000 0 01111111121111110
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
+......++......++...+.+.+++..--+.++ +++
T Consensus 163 ----------------------------------s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk--------ld~ 200 (486)
T KOG0550|consen 163 ----------------------------------SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK--------LDA 200 (486)
T ss_pred ----------------------------------cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh--------ccc
Confidence 00011111222223445555666666666555655 677
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------------EYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~------------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
.+.+...--..++.-.++.+.++..|+++|...|.+. +.|..-+.-+.++|.+..|.++|..||.+.|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 7776655555555566788889999999998888665 4777777777788999999999999999884
Q ss_pred c---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 422 K---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 422 p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
. .+..+|...+....+.|+..+|+.-++.+ +++++..+..++..+.+..-++++++|.+-|++|++...
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 24567777888889999999999999998 899999999999999999999999999999999999874
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=102.35 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001060 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 163 (1169)
Q Consensus 84 ~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~ 163 (1169)
-+..|+++++.+|.+ |..++..+... |++++|...|++++...|.+..+|..++.++.+.|++++|+..|++++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457899999999995 66677777664 6999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 164 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 164 ~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
..|.+.+.|+..+..+. ..|++++|+..|++++...+.+
T Consensus 87 l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 87 LDASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred cCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999888 8999999999999999966654
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=121.75 Aligned_cols=83 Identities=33% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC------C-Ceeec
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS------P-IQLAG 1102 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~------~-~~i~g 1102 (1169)
+..+.+|||+|||+++|+++|.++|++||+|+++. ++.++.||+++|+|||.|.+..++..||.+- | +.|.|
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~-iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI-IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEE-EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 44679999999999999999999999999999985 5789999999999999999999999999762 3 78999
Q ss_pred eEEEEEeccCC
Q 001060 1103 RQVYIEERRPN 1113 (1169)
Q Consensus 1103 ~~l~V~~~r~~ 1113 (1169)
|.|+|..+-++
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999866543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=119.20 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
...+.+++...+=..+|+..||+ +++|-..+.+|...|+..+|..+..+-++ .+.++-+|..+
T Consensus 401 q~~laell~slGitksAl~I~Er----------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER----------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh----------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 33445566666666777777765 47899999999888988888887777776 67777788777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
++++... .+|++|.++....+..+...++....+++++.++.+.++.. .+++|.....|+.++.+..+++++
T Consensus 464 GDv~~d~-------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s-l~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDP-------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS-LEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccCh-------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH-hhcCccchhHHHhccHHHHHHhhh
Confidence 7766432 46777777665556667777787777889999999999998 789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~ 556 (1169)
..+.+.|.+++...|++ .+.|.+++..+.+ .++..+|+..+++|++.+..+..+|++|..+....+. .+-
T Consensus 536 q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge---~ed 605 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDN------AEAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE---FED 605 (777)
T ss_pred HHHHHHHHHHhhcCCCc------hhhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc---HHH
Confidence 99999999999998753 6789999888777 9999999999999999999999999999999998887 444
Q ss_pred HHHHHHHHhh
Q 001060 557 LEQLVDKFLM 566 (1169)
Q Consensus 557 ~r~l~eral~ 566 (1169)
+.+++.+.+.
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 5556666544
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=133.27 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=70.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
+|||||||.++|+++|+++|++||.|.+|+| +++..+++++|||||+|.+.++|++||+. ++..|+|+.|+|.+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v-~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRV-CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999999999999999999999999875 66788899999999999999999999977 78889999999987643
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=129.66 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=74.4
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.++|..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i-~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQC-IKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 446789999999999999999999999999999876 5677889999999999999999999999999999999999976
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 43
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=127.04 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+.+|||+||+.++|+++|+++|++||.|++++|.. + .+|+++|||||+|.+.++|.+||.. ++..|+|+.|.|..+
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~-d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML-D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE-C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 457899999999999999999999999999987643 4 6789999999999999999999976 899999999999987
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 653
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-09 Score=108.42 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++.|||-||..++++.-|.++|++||.|..|+| ++|-.|.++||||||...+.++|..||.. ||..+++|.|.|.++
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv-irD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV-IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEE-EecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 4799999999999999999999999999999986 78888899999999999999999999977 899999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 764
|
|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-10 Score=111.47 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=74.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++||||+|..++++.-|...|-.||.|+.|.+.+ +..+++.||||||+|+..++|.+||.. |+.++-||.|+|..+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPl-DyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPL-DYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhccccc-chhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 458999999999999999999999999999987654 667889999999999999999999987 899999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8654
|
|
| >smart00362 RRM_2 RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-09 Score=91.82 Aligned_cols=71 Identities=34% Similarity=0.564 Sum_probs=62.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+|||+|||..++.++|+++|++||.|..+.+. .+. +.++|+|||+|.+.+++.+|+.. ++..++|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~-~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIP-KDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999997643 333 67889999999999999999987 6899999998873
|
|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=107.56 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=79.1
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+...+.+.|.-||.++|+++||.+|+..|+|++|+ ++||+-+|++-|||||.|-++.+|++||.. ||..+..+.|+|.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK-LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCK-LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeee-eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 44568899999999999999999999999999998 599999999999999999999999999987 8999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
++||...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998653
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=111.58 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=76.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
-..+||+.|...++-++||+.|.+||+|.+++| |||..|+++||||||.|-..++|+.||.. ||.-|++|.|+-.++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akv-irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKV-IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceE-eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 368999999999999999999999999999996 89999999999999999999999999987 8999999999999887
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
.++.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 6653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-07 Score=97.19 Aligned_cols=174 Identities=16% Similarity=0.040 Sum_probs=149.5
Q ss_pred HHHHHHHH---HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 357 ENWHNYLD---FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 357 ~~W~~yl~---~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
+.|.-|=. .....|..+-|...+.+....+|.+..+-...|.+|+..|.+++|.++|++.++-. |.+..++-....
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHH
Confidence 45666533 23466888889999999999999999999999999999999999999999999866 778888888777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 513 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~ 513 (1169)
+...+|+--+|++.+..- ++..+.+.++|..+++++...|+|++|.-||+..+-+.| ..|.++..|++.+|..
T Consensus 129 ilka~GK~l~aIk~ln~Y-L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEY-LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHcCCcHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHH
Confidence 888888888999988885 788999999999999999999999999999999998874 4578889999999984
Q ss_pred hC--CHHHHHHHHHHHhhhcCCCHHHH
Q 001060 514 SR--NAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 514 ~g--~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.| +++-||+.|.++|+++|.+..-|
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 44 68899999999999999665333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-08 Score=119.10 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=130.5
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
.+++.++.+.++.++...|.+++|..++++++++. |++..+++.++..+.+.+.+++|+..++++ +...|++....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~-l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELY-FSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHH-hhcCCCCHHHHHH
Confidence 56778999999999999999999999999999988 999999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
++.++..+|++++|+.+|++++...| ..+..|+.|+..+.. .|+.++|...|++|++...+-.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p------~~~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP------EFENGYVGWAQSLTR-RGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999999999654 336799999999887 9999999999999999875544
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.7e-09 Score=125.94 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=64.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V 1107 (1169)
.+++|||+|||.++++++|+++|++||.|.+++| +++ .+|+++|||||+|.+.++|++||+. ++..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl-~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRL-MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEE-EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 3589999999999999999999999999999875 445 7899999999999999999999987 777775 665544
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-09 Score=128.71 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=72.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||..+|+++|+++|+.||.|+.+.| +++..+|+++|||||+|.+.++|..||.. +|+.|+|+.|.|..+.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL-IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 478999999999999999999999999999875 56777899999999999999999999976 8999999999999876
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-06 Score=104.41 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=197.7
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-----GSMDK 153 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-----~~~e~ 153 (1169)
+....+++.|+..-..-.+........++++.++| +.++|..+|..+|.++|+|..|+..|.....-. .+.+.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg--~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG--RKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 45778999998888888887777789999999975 999999999999999999999999998877333 25677
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC-H-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 154 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P-ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 154 A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~-~-e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
...+|+..-..+|.+.-.-..-+.|.. |+ + ..+..++...|.. |. ..+.... +.+|.
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~---g~~F~~~~~~yl~~~l~K-gv----PslF~~l-------------k~Ly~ 154 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLE---GDEFKERLDEYLRPQLRK-GV----PSLFSNL-------------KPLYK 154 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCC---HHHHHHHHHHHHHHHHhc-CC----chHHHHH-------------HHHHc
Confidence 888888888888765433222222211 11 0 1112222222221 11 0111111 11110
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001060 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311 (1169)
Q Consensus 232 r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 311 (1169)
. + .....+-..+..
T Consensus 155 d----~-~K~~~i~~l~~~------------------------------------------------------------- 168 (517)
T PF12569_consen 155 D----P-EKAAIIESLVEE------------------------------------------------------------- 168 (517)
T ss_pred C----h-hHHHHHHHHHHH-------------------------------------------------------------
Confidence 0 0 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCccc---CCCChhcHHHHHHH--HHHHHHcCChHHHHHHHHHHHHh
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIR-RPYFHV---KPLSVTELENWHNY--LDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~-r~~~~v---~pl~~~~~~~W~~y--l~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
|...+. ...+.. ...++...-+|..| +..+...|++++|+...++||..
T Consensus 169 -------------------------~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 169 -------------------------YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred -------------------------HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 000000 000100 01234445678665 67888999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC--CC-hH--
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS--PG-LL-- 460 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~--P~-~~-- 460 (1169)
.|..+++++..|.+|...|++++|...++.|..+. ..+.-+....+.+..+.|++++|.+++..- ..-+ |. ++
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F-tr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLF-TREDVDPLSNLND 301 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCCCcccCHHH
Confidence 99999999999999999999999999999999877 667778888999999999999999998874 3322 21 11
Q ss_pred --HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 461 --EAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 461 --~~~--~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
-+| ...|..+.|.|++..|..-|......+.
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 135 4456677899999999999988888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=116.02 Aligned_cols=207 Identities=10% Similarity=0.016 Sum_probs=157.9
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh-----
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----- 425 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~----- 425 (1169)
.++.+.++|..++..+...+++++++.+.+.++...|....+|+..+.++.+.++++.+.-+ +++.++ +...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHH
Confidence 57888999999999999999999999999999999999999999999988888887777655 666666 4444
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 426 --------------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 426 --------------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
.+++.+|.++.+.|+.++|..+|+++ ++++|++..+..++|.++... ++++|+.++.+|+...-
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~-L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL-VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999998 899999999999999999888 99999999999988652
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh-----------------CCChhHH
Q 001060 492 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI-----------------QSSPKQI 554 (1169)
Q Consensus 492 ~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~-----------------~~~~~~~ 554 (1169)
+ .+++..++.+|++.++.+|++..++......-.. ....++.
T Consensus 181 ~---------------------~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 181 K---------------------KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred h---------------------hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 1 3345666666666666666665544322221111 1112234
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 001060 555 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL 588 (1169)
Q Consensus 555 ~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l 588 (1169)
+....++.++|...+.+. ..+.+|-.-|.
T Consensus 240 ~~~i~iLK~iL~~~~~n~-----~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHDNKNN-----KAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcCCcch-----hhHHHHHHHHH
Confidence 556667788888776654 33555555554
|
|
| >smart00360 RRM RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-09 Score=89.78 Aligned_cols=70 Identities=34% Similarity=0.559 Sum_probs=62.0
Q ss_pred EecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1038 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1038 V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
|+|||..+++++|+++|++||.|..+.+. .++.+++++|+|||+|.+.++|..|+.. ++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~-~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLV-RDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEE-eCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999998753 4455688899999999999999999987 6899999998874
|
|
| >KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-09 Score=122.10 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=75.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
+.|||||+|+++++++|..+|+..|.|.++++ +.|+.||+.+||||++|.+.+++..|++. ||.+++||+|+|+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee-cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999884 78999999999999999999999999987 89999999999999876
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 98 ~~ 99 (435)
T KOG0108|consen 98 RK 99 (435)
T ss_pred cc
Confidence 54
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-08 Score=96.32 Aligned_cols=114 Identities=14% Similarity=0.209 Sum_probs=106.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001060 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165 (1169)
Q Consensus 86 ~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 165 (1169)
+.|++++..+|.+.++-..++..+... +++++|...|++++..+|.+..+|..++.++.+.+++++|+.+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999999999988888888874 699999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001060 166 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 166 P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~ 202 (1169)
|.+.+.|+.++.++. ..|+.++|...|+++++..+.
T Consensus 82 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccc
Confidence 999999999999888 889999999999999996654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=125.45 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=72.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||..+|+++|+++|++||.|..|.+ +++..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 478999999999999999999999999999875 56777889999999999999999999976 8999999999999976
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=103.34 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH---HHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE---YWI 394 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e---~W~ 394 (1169)
-.+...|...++++.++..|+++++. .|.++.....|..++..+.+.|++++|+..|++++...|.++. .|+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34455677889999999999999882 2333334467888999999999999999999999999998776 688
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHHhhccChHHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 001060 395 RYVLCMEAS--------GSMDLAHNALARATHVFVKRLPEIH-----------------LFAARFKEQNGDIDGARAAYQ 449 (1169)
Q Consensus 395 ~~a~~l~~~--------g~~e~A~~vl~rAl~~~~p~~~~l~-----------------~~~a~~~e~~g~~~~A~~~~~ 449 (1169)
..+.++... |+++.|...|++++..+ |++...+ +..+.++...|++.+|+..|+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 888877765 67899999999999988 6665433 345777888999999999999
Q ss_pred HHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 450 LVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 450 ~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++ ++..|+ ..++|+.++.++..+|++++|..+++.....+
T Consensus 191 ~a-l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TV-VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HH-HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 98 666554 56899999999999999999999988776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-07 Score=98.13 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001060 375 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 454 (1169)
Q Consensus 375 a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 454 (1169)
+...+-+.....|.+.++ ..++..+...|+-+....+...+...+ +++..++..+++...+.|++..|...+.++ ..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA-~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKA-AR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHH-hc
Confidence 444455556678999999 999988888898888888888866555 778888888999999999999999999998 88
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 455 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+.|++.++|..++-++.+.|+++.|+..|.+++++.+++ |.+..+++.+++. .|+++.|+.++.++...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999998753 6688888888776 999999999999999998889
Q ss_pred HHHHHHHHHhHhhCCChhHHHHHHHH
Q 001060 535 KPLLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
..+..+++..-..+++ +++++.+
T Consensus 202 ~~v~~NLAl~~~~~g~---~~~A~~i 224 (257)
T COG5010 202 SRVRQNLALVVGLQGD---FREAEDI 224 (257)
T ss_pred hHHHHHHHHHHhhcCC---hHHHHhh
Confidence 9999999988888887 3444444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=108.25 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQ----------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 152 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~----------~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e 152 (1169)
+....|.+.|+.||.|+++|..|+.+-..+.. .-.++-..+|++||+.+|++..+|+.|.+...+....+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 45678999999999999999999998766521 12356778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCCCC---------------CHHHHHHHHH
Q 001060 153 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPETIRRLFERGLAYVGTDYL---------------SFPLWDKYIE 215 (1169)
Q Consensus 153 ~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~--~~e~Ar~~~erAl~~~g~d~~---------------s~~lw~~y~~ 215 (1169)
+..+.++++|..+|.+..||..|+.|...... .++.++.+|.++|........ -..+...+..
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985443 588999999999987532111 1356777788
Q ss_pred HHHHhhhHHHHHHHHHHHHhc
Q 001060 216 YEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 216 ~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
|+...|-.++|..+++-+|+.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHH
Confidence 888899999999999999986
|
|
| >KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=89.92 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
-.+-|||+|||+++|.+++-++|.+||.|..++| .. +...+|-|||.|++..+|.+|+.. +|..+.++.+.|-.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRi--G~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI--GN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEe--cC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3578999999999999999999999999988654 22 234689999999999999999987 899999999999654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 3
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-09 Score=114.00 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=70.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++||||.+.++..++.||..|..||+|+++.+. -|..|+++||||||+|+-++.++-|++. ||..++||.|+|..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMS-WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMS-WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecc-cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 789999999999999999999999999998753 3778999999999999999999999987 899999999999743
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=111.92 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
.++-||||.||.++.|++|..+|++.|+|-++++ ++++.+|.+||||||+|.+.+.|+.||+. |+++|. |+.|.|.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL-MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL-MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEE-eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4689999999999999999999999999999985 56888999999999999999999999987 777774 7777764
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=110.22 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..+-|||+||+.++|++.|+++|++||.|.+|.. + |-||||.|.+.++|.+|++. |+..|+|..|.|..+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk-~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK-P--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeec-c--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 3478999999999999999999999999998642 2 34999999999999999987 899999999999988
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+|..
T Consensus 329 KP~~ 332 (506)
T KOG0117|consen 329 KPVD 332 (506)
T ss_pred CChh
Confidence 8643
|
|
| >COG0724 RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=113.51 Aligned_cols=78 Identities=32% Similarity=0.542 Sum_probs=71.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ..++.+|+++|||||+|.+.+++..|+.. ++..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999998865 45667899999999999999999999988 7899999999999954
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=113.89 Aligned_cols=81 Identities=22% Similarity=0.362 Sum_probs=72.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|.|+|||+.+...+|+.+|+.||.|..|. +..+..|+..|||||.|....+|..||+. |+..|+||+|-|+++
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~--IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIV--IPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEE--cccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 358999999999999999999999999999965 44566677779999999999999999988 899999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
-++.
T Consensus 194 V~Kd 197 (678)
T KOG0127|consen 194 VDKD 197 (678)
T ss_pred cccc
Confidence 6543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.3e-07 Score=104.82 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=93.0
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
+.+++.++.+.+++.+..+|.....|+.++.+..+.++++.|.+.|.+++... |++.+.|..++..+.+.++..+|+..
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 35677777777777777777777777777777777777777777777777765 77777777777777777777777777
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+.++ ++.+-++..+|.+|..+....|++++|++.|.+.+.....
T Consensus 576 l~EA-lKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 576 LKEA-LKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHH-hhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 7777 5666777777777777777777777777777777776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-05 Score=89.15 Aligned_cols=295 Identities=13% Similarity=0.116 Sum_probs=188.5
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH
Q 001060 147 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV 226 (1169)
Q Consensus 147 ~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a 226 (1169)
-.|+|.+|+++..|.-+.. ...-+-+..+--.-...|+.+.+-.++.++-+..|.+- -.....-.+....++++..|
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~--l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT--LAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch--HHHHHHHHHHHHhCCCchhH
Confidence 4478888888888876654 34444333333222367888888888888887555432 22333344455556777777
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccC
Q 001060 227 AMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 306 (1169)
Q Consensus 227 ~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~ 306 (1169)
+.-...+++.-+.+..
T Consensus 173 ~~~v~~ll~~~pr~~~---------------------------------------------------------------- 188 (400)
T COG3071 173 RENVDQLLEMTPRHPE---------------------------------------------------------------- 188 (400)
T ss_pred HHHHHHHHHhCcCChH----------------------------------------------------------------
Confidence 7777666665332211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001060 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 386 (1169)
Q Consensus 307 ~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~ 386 (1169)
.+.....+|...+.+.+....+.+.-+...++-.....-+-..|...++=....++.+-....+++.-...
T Consensus 189 ---------vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l 259 (400)
T COG3071 189 ---------VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL 259 (400)
T ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence 11222233344444444333333333321111100001112334444443333344444555666655556
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
.+++++-..|+..+...|+.++|..+.+.+++.. -++.+...+..+ +-++...-.+..++. ++..|+++.+++.+
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~L~~~~~~l--~~~d~~~l~k~~e~~-l~~h~~~p~L~~tL 334 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPRLCRLIPRL--RPGDPEPLIKAAEKW-LKQHPEDPLLLSTL 334 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChhHHHHHhhc--CCCCchHHHHHHHHH-HHhCCCChhHHHHH
Confidence 7889999999999999999999999999999865 344443333322 356677777788887 67799999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+.++.+.+.+.+|...|+.||...+. ..-|..+++.+.+ .|+..+|-.+++++|.+
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~-~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPS-------ASDYAELADALDQ-LGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHH-cCChHHHHHHHHHHHHH
Confidence 99999999999999999999998754 2346666777666 99999999999999854
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-08 Score=121.03 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=64.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~~ 1109 (1169)
++.|||+|||+++++++|+++|++||.|.+|.| ++ .||||||+|++.++|.+||+. ++..|+|+.|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-EC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 589999999999999999999999999999764 32 358999999999999999974 68999999999987
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
+.
T Consensus 75 s~ 76 (481)
T TIGR01649 75 ST 76 (481)
T ss_pred cC
Confidence 64
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-05 Score=92.32 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001060 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576 (1169)
Q Consensus 497 ~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~ 576 (1169)
...|.|....++|... ..++++|-.++-.+.+.. ..+.+-...+-+ +-.-|...++...| ..++
T Consensus 1077 ~sDp~ll~RcadFF~~-~~qyekAV~lL~~ar~~~--------~AlqlC~~~nv~-----vtee~aE~mTp~Kd--~~~~ 1140 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFEN-NQQYEKAVNLLCLAREFS--------GALQLCKNRNVR-----VTEEFAELMTPTKD--DMPN 1140 (1416)
T ss_pred CCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH--------HHHHHHhcCCCc-----hhHHHHHhcCcCcC--CCcc
Confidence 4457888888888765 667888877766554321 122222222211 11122233444333 2367
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHH
Q 001060 577 AAEREELSCVFLEFLGLFGDAQLIKK 602 (1169)
Q Consensus 577 ~~~~~~i~~~~l~fe~~~Gd~~~i~~ 602 (1169)
.+.|.+|++.-.+|....|+-..+-|
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHH
Confidence 78999999999999999998665443
|
|
| >cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-08 Score=85.09 Aligned_cols=72 Identities=35% Similarity=0.650 Sum_probs=62.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+|+|+|||..+++++|+++|+.||.|..+.+. .+. .++++|+|||+|.+.+++..|+.. ++..++|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~-~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIV-RDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEe-eCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 48999999999999999999999999987643 333 336789999999999999999987 7888999999886
|
This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=92.13 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=62.2
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|.+...-..++..+...|++++|+..|++++..+|.++++|..++.++...|++++|..+|++++... |+++..|+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 4444444455555555555566666666666665566666666666665555555666666666655554 555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
++.++...|++++|...|+++ ++++|++..
T Consensus 91 la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~ 120 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLA-IEICGENPE 120 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhccccch
Confidence 565555566666666665555 455554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=108.73 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=69.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeece--EE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGR--QV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~--~l 1105 (1169)
|.+.-++|||-||..++|.|||.+|++||.|.+|.| ++|+.||.++|||||.|.+.+++.+|+.+ |-++|-|- .|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 456678999999999999999999999999999864 88999999999999999999999999987 57777663 46
Q ss_pred EEEec
Q 001060 1106 YIEER 1110 (1169)
Q Consensus 1106 ~V~~~ 1110 (1169)
.|.++
T Consensus 110 qvk~A 114 (510)
T KOG0144|consen 110 QVKYA 114 (510)
T ss_pred eeccc
Confidence 66544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=91.28 Aligned_cols=112 Identities=7% Similarity=0.058 Sum_probs=102.9
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 90 NIVKAN-SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 90 ~al~~n-P~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
-..... +++.+.-+.++-.+.. .|+++.|.++|+-++..+|.+..||+.++..+...|++++|+..|.+++.+.|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~--~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLME--VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345566 7888999999988877 4699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 169 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 169 ~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
+...++.+..++ ..|+.+.|++.|+.++..++.++
T Consensus 103 p~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 103 PQAPWAAAECYL-ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred chHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCh
Confidence 999999999999 89999999999999999887543
|
|
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=105.56 Aligned_cols=79 Identities=25% Similarity=0.425 Sum_probs=73.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
...|||..|.+-+|+++|.-+|+.||.|.+|.| +++++||.+-.||||+|++.+++++|.-. ..+.|++|+|.|++..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceV-IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEV-IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeE-EecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 368999999999999999999999999999986 89999999999999999999999999855 7899999999999875
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=91.92 Aligned_cols=167 Identities=19% Similarity=0.133 Sum_probs=146.2
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
+|....+ .++..-+.-.|+-+....+..+.+...+.+.++...++..+...|++..|...+.|+.... |++.++|..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 5666777 7777777778888888888889888999999999889999999999999999999999987 8999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 511 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~ 511 (1169)
+..+.+.|+.+.|+..|.++ .++.|....+..+++..+.-.|+++.|+.++.++....+.+ ..+-.+++...-
T Consensus 141 gaaldq~Gr~~~Ar~ay~qA-l~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~~ 213 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQA-LELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRVRQNLALVVG 213 (257)
T ss_pred HHHHHHccChhHHHHHHHHH-HHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHHh
Confidence 99999999999999999999 89999999999999999999999999999999999876422 456677776655
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001060 512 LVSRNAEKARQILVDSL 528 (1169)
Q Consensus 512 ~~~g~~e~Ar~i~~kAl 528 (1169)
. .|++.+|+++-..=+
T Consensus 214 ~-~g~~~~A~~i~~~e~ 229 (257)
T COG5010 214 L-QGDFREAEDIAVQEL 229 (257)
T ss_pred h-cCChHHHHhhccccc
Confidence 4 999999999866443
|
|
| >smart00361 RRM_1 RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-08 Score=84.82 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHHHh----cCCCeeeeeEEeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1047 AFEIEEEFQ----NFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1047 ~~~L~~~F~----~~G~i~~~~i~~~~~~~--g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+++|+++|+ +||.|.++...+.++.+ |+++|||||+|.+.++|.+|+.. +|..++||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 99999997522445555 88999999999999999999987 8999999999863
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-08 Score=98.25 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
...+|||+||+..++++.|.++|-+.|+|..+.| -+++.+...+|||||+|.+.++|+=||+. |.+.+-||+|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4589999999999999999999999999999875 56777888999999999999999999987 899999999999877
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
|
|
| >KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-08 Score=103.49 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=79.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.+++||+|+.+.+|.++++.+|+.||.|..++| ..++.+|++|||+||+|.+.+.++.++.+++..|.|+.+.|..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceee-eccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 345689999999999999999999999999998876 4577778899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC
Q 001060 1110 RRPNTGSTSRG 1120 (1169)
Q Consensus 1110 ~r~~~~~~~rg 1120 (1169)
++.+..+.+++
T Consensus 177 ~r~~~pg~~~~ 187 (231)
T KOG4209|consen 177 KRTNVPGMGRS 187 (231)
T ss_pred eeeecCCcCCC
Confidence 99875544443
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=113.41 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1031 GEVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
.++++|||+|||+ .+|+++|+++|+.||.|.+|+|+. + .+|||||+|.+.++|..||.. ++..|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~-~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK-N-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 3568999999997 699999999999999999987633 3 258999999999999999976 8999999999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
.++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87654
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=96.97 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=73.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||||.+.+++..|.+.|+.||.|...--.+++..||.++|||||.|++.+...+||.. |+..++.++|+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 478999999999999999999999999876433467888999999999999999999999988 8999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.5e-05 Score=97.85 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----CHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWI 394 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~-----~~e~W~ 394 (1169)
+..++...++++.+...+++++...--+..+..+.....+..++..+...|++++|...+++++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 345566778888888888877652100000000111122334455556679999999999999876432 234555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccC-hHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHH
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRL-PEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAII 464 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~ 464 (1169)
.++.++...|+++.|...+.++..+..... ...+. .....+...|+.+.|...+... ....+.. ...+.
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~-~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA-PKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc-CCCCCccchhHHHHHH
Confidence 577778889999999999999987642211 11111 1123344578999999988775 2212111 12256
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.++.++...|++++|+.+|++++..............++..++..++. .|+.++|+..+.+|++.....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-QGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhCcc
Confidence 778888899999999999999998754322112223456677777776 999999999999999987544
|
|
| >KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=101.94 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=68.5
Q ss_pred CCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEE
Q 001060 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1106 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~ 1106 (1169)
+|...++||||||...+++.+|+++|-+||+|+++.+.. .++||||+|.+..+|+.|.+. +...|+|++|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-------ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 344678999999999999999999999999999976533 246999999999999999987 68899999999
Q ss_pred EEeccCC
Q 001060 1107 IEERRPN 1113 (1169)
Q Consensus 1107 V~~~r~~ 1113 (1169)
|.+.++.
T Consensus 297 i~Wg~~~ 303 (377)
T KOG0153|consen 297 IKWGRPK 303 (377)
T ss_pred EEeCCCc
Confidence 9998883
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-08 Score=111.47 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+..++|||||.+++++++|+.+|+.||.|..|.+ .++..||+++|||||+|.+.+++.+|++. ||++|-||.|+|...
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeee-ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3455999999999999999999999999999764 44666999999999999999999999866 899999999998654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 356 ~ 356 (549)
T KOG0147|consen 356 T 356 (549)
T ss_pred e
Confidence 4
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00043 Score=77.51 Aligned_cols=314 Identities=13% Similarity=0.092 Sum_probs=210.7
Q ss_pred HHhCCCCHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 92 VKANSSDFSAWTA----------LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 161 (1169)
Q Consensus 92 l~~nP~d~~aw~~----------L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 161 (1169)
|-.-|.....|+. +..-+.++++|++.+|.++..+.-+..+...-.++.-++.--..|+++++-..+.++
T Consensus 65 v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 65 VLRTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344555566654 555556667899999999999988888877777777778888889999999999999
Q ss_pred HhccCCCHHHHH--HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 162 VQGVTYSVDIWL--HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 162 L~~~P~s~~lw~--~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
-+. +.+..+-. .-+++.. ..++++.|+...+.++...+. ...+-..-.+.....|+|..+..+...+-+...
T Consensus 145 ae~-~~~~~l~v~ltrarlll-~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~- 218 (400)
T COG3071 145 AEL-AGDDTLAVELTRARLLL-NRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGAWQALLAILPKLRKAGL- 218 (400)
T ss_pred hcc-CCCchHHHHHHHHHHHH-hCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-
Confidence 887 34444443 4455665 678999999999999984444 444445555555567888877777666554311
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC-CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA-PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~ 318 (1169)
++.+++..+....+.- +.+... .. +......||+-
T Consensus 219 ---------------------l~~~e~~~le~~a~~glL~q~~~----------~~-----------~~~gL~~~W~~-- 254 (400)
T COG3071 219 ---------------------LSDEEAARLEQQAWEGLLQQARD----------DN-----------GSEGLKTWWKN-- 254 (400)
T ss_pred ---------------------CChHHHHHHHHHHHHHHHHHHhc----------cc-----------cchHHHHHHHh--
Confidence 1112221111110000 000000 00 00001112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.-+.+ ..+.++-..|+..+.+.|+.+.|..+.+.+|...-. +. .+.++.
T Consensus 255 ------------------~pr~l-----------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~-L~~~~~ 303 (400)
T COG3071 255 ------------------QPRKL-----------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR-LCRLIP 303 (400)
T ss_pred ------------------ccHHh-----------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh-HHHHHh
Confidence 11111 233567778888888999999999999999976443 33 333333
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
.+ .-++...-.+..++.++.+ |+++.++..+++++.+++.+.+|...|+.+ +..-|+ ..-|..++..+.++|+..+
T Consensus 304 ~l-~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaA-l~~~~s-~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 304 RL-RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAA-LKLRPS-ASDYAELADALDQLGEPEE 379 (400)
T ss_pred hc-CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCC-hhhHHHHHHHHHHcCChHH
Confidence 22 3567777888889999888 899999999999999999999999999988 565553 5567778888999999999
Q ss_pred HHHHHHHHHHhh
Q 001060 479 AFSLYEQAIAIE 490 (1169)
Q Consensus 479 A~~iy~~Al~~~ 490 (1169)
|..+++.++...
T Consensus 380 A~~~r~e~L~~~ 391 (400)
T COG3071 380 AEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-08 Score=101.07 Aligned_cols=72 Identities=25% Similarity=0.512 Sum_probs=65.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
.++||||||.++++.+|+.+|++||+|.+|+| | |.||||..++...+..||.. ++.+|+|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI-v--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI-V--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee-e--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 46999999999999999999999999999986 3 35999999999999999985 89999999999998877
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 74 Ks 75 (346)
T KOG0109|consen 74 KS 75 (346)
T ss_pred cC
Confidence 63
|
|
| >PF13893 RRM_5: RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-07 Score=75.82 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=46.2
Q ss_pred HHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1050 IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1050 L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
|.++|++||.|.++.+ ..+. +|+|||+|.+.++|..|++. ++..++|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~--~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKI--FKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEE--ETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEE--EeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999999654 2221 58999999999999999986 999999999999874
|
(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A .... |
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=111.09 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=60.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcC------------CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCC
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNF------------GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPI 1098 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~------------G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~ 1098 (1169)
...++|||||||+++|+++|+++|.+| +.|..+ ..++.+|||||+|.+.++|..||.++|+
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~-------~~~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSV-------NINKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEE-------EECCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 356899999999999999999999975 223322 1235679999999999999999988999
Q ss_pred eeeceEEEEEec
Q 001060 1099 QLAGRQVYIEER 1110 (1169)
Q Consensus 1099 ~i~g~~l~V~~~ 1110 (1169)
.|.|+.|+|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999999643
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=101.44 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
....|||++||.++++.++++.|.+||.|..+.+ +.+..+.+.+||+||.|.+.+++.+++...-+.|+|+.|.|..+-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~-~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVI-MYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEE-eecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 3579999999999999999999999998888754 557888999999999999999999999988999999999998877
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 654
|
|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=98.64 Aligned_cols=84 Identities=24% Similarity=0.458 Sum_probs=72.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.-++.+||.+|...+...+|+.+|++||.|.-.+| |.+..+--.+|||||++.+.++|.+||+. +.+.|.|+.|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV-VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV-VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceee-eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 35789999999999999999999999999988776 44544445789999999999999999987 79999999999998
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++.-..
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-05 Score=87.90 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
+.....|+-.+.-....|++++|+..++..+... |+++.++...++++.+.++.++|.+.++++ +.+.|+..-+|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka-l~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKA-LALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCccHHHHHH
Confidence 5667777777776666777777777777777666 777777777777777777777777777777 67777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
++.+...|+..+|+.++.+.+...|+ .|..|..+++-+.. .|+..+|...+.+++.....
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~------dp~~w~~LAqay~~-~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPE------DPNGWDLLAQAYAE-LGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCC------CchHHHHHHHHHHH-hCchHHHHHHHHHHHHhCCC
Confidence 77777777777777777777776643 25677777766554 77777777776666655543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-06 Score=91.60 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=111.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---MDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---~e~A~ 155 (1169)
.+++.-+.+|+..|..||.|.+.|..|++.+... ++...|..+|.+++.+.|+|.++|..|+..++...+ ..++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4578899999999999999999999999999985 699999999999999999999999999998887753 67899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
.+|+++|+..|.++.....++.-++ ..|++.+|...++..|+..+.+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~af-e~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAF-EQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999888888777 7899999999999999987765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-05 Score=89.34 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC----------
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------- 389 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---------- 389 (1169)
+...|.+.+.|..++..|..+|+ +.|.+...|..-+..++-.++++++..-+++.+...+..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~--------~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAID--------MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHH--------hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35567788899999999999998 677777777776655544444443333333322222211
Q ss_pred ------------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 390 ------------------------------------------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 390 ------------------------------------------~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
...-+.-+.++.-.+++++|..+--+.+++. +.+.+.
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~a 205 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEA 205 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHH
Confidence 2233334455666677777777776767655 667777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL------------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~------------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
.+..+.++.-.++.+.|...|+++ +.++|+. ++.|...++-..+.|++..|.++|..||.+.|.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qa-l~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~- 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQA-LRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK- 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhh-hccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-
Confidence 777788888888999999999998 6777764 45688888888999999999999999999998653
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
.++..+|.+.+....+ +|+.++|..-.+.|+++++.-..-+..-+.-.+.+ +..+.+..-|++++....+
T Consensus 284 -~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~l---e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 284 -KTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLAL---EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred -chhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccc
Confidence 3456678777777666 99999999999999999865433222222111111 2245567778888776544
|
|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-08 Score=106.14 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||++|+++++++.|++.|++||+|.+|. .++++.+++++||+||+|++.+.+.++|....+.|+|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~-vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV-VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE-EeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 568999999999999999999999999999995 4788899999999999999999999999988999999998887765
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.5e-06 Score=93.02 Aligned_cols=160 Identities=18% Similarity=0.067 Sum_probs=137.9
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
+.....|.-.+.-+...|++++++.++...+...|.++-+|...++++...|+..+|.+.+++++... |+.+.+++.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 35566777766666678999999999999999999999999999999999999999999999999988 88899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
..+.+.|+..+|..++++. +..+|+++..|..++..+..+|+..++...+- +.++.
T Consensus 382 ~all~~g~~~eai~~L~~~-~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------------E~~~~ 437 (484)
T COG4783 382 QALLKGGKPQEAIRILNRY-LFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------------EGYAL 437 (484)
T ss_pred HHHHhcCChHHHHHHHHHH-hhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------------HHHHh
Confidence 9999999999999999997 67799999999999999999999777665433 33333
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.|+++.|...+.+|.+....+...|
T Consensus 438 -~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 438 -AGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred -CCCHHHHHHHHHHHHHhccCCcHHH
Confidence 7889999999999998875554444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=83.50 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=90.4
Q ss_pred CC-hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 351 LS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 351 l~-~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
+. +..++....|+-.....|+++.|..+|+-....+|.+.+.|+.++.++...|++++|+.+|.+|+.+. |+++..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 45 66677788888777889999999999999999999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
..+.++...|+++.|++.|+.+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999987
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-06 Score=99.03 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
-|.-+...|++++|+.+|++|+++. |+++.+|+.+|.++...|++++|+..++++ ++++|++..+|++++.++..+|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A-l~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKA-IELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444555677777777777777766 667777777777777777777777777776 66777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001060 476 LEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~ 492 (1169)
+++|+..|++++.+.|.
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77777777777777754
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-07 Score=101.56 Aligned_cols=84 Identities=24% Similarity=0.517 Sum_probs=77.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+|..+||.+||.+.-+.+|-..|..||.|++.+|++ |+.||-+|||+||.|++..++..||.. ||+.|++++++|..
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfi-dk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFI-DKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEE-ecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 3678899999999999999999999999999998855 788999999999999999999999987 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+|.+..
T Consensus 501 k~~~~n 506 (510)
T KOG0144|consen 501 KRDRNN 506 (510)
T ss_pred eeccCC
Confidence 987643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00012 Score=87.05 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 467 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 467 (1169)
.++.+|.=++.|++..|++|.|+.+|..|-. |+-..++..-+|++++|..+-++ .++..+.+.++
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhla 974 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLA 974 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHH
Confidence 4567888899999999999999999977654 44556666678888888776554 34566777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 001060 468 NMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 468 ~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
..+...|++-+|...|.+|...
T Consensus 975 R~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 8888889999998888777543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00056 Score=74.67 Aligned_cols=306 Identities=12% Similarity=0.127 Sum_probs=173.6
Q ss_pred HhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001060 147 RVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 223 (1169)
Q Consensus 147 ~~~~~e~A~~l~eraL~~~---P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~ 223 (1169)
...+|.-|+.+++-.+... -++.++|+.+|.|. .|++++|...|+.+.. .+--...+|..+.-...-.|.+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh---LgdY~~Al~~Y~~~~~---~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH---LGDYEEALNVYTFLMN---KDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh---hccHHHHHHHHHHHhc---cCCCCcccchhHHHHHHHHHHH
Confidence 3445666666665555332 14788999999984 5899999999998887 2222456776665444445677
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcc
Q 001060 224 SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 303 (1169)
Q Consensus 224 ~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~ 303 (1169)
.+|..+-.++-+.|... -.+|....++
T Consensus 108 ~eA~~~~~ka~k~pL~~-RLlfhlahkl---------------------------------------------------- 134 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCI-RLLFHLAHKL---------------------------------------------------- 134 (557)
T ss_pred HHHHHHHhhCCCChHHH-HHHHHHHHHh----------------------------------------------------
Confidence 88877776666665441 1112111111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 304 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 383 (1169)
Q Consensus 304 ~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL 383 (1169)
.+.+.|..+...+++. .|+-| .++...--.-.+.+|+.+|.|.|
T Consensus 135 ----ndEk~~~~fh~~LqD~-------------~EdqL-------------------SLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 135 ----NDEKRILTFHSSLQDT-------------LEDQL-------------------SLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred ----CcHHHHHHHHHHHhhh-------------HHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111111110 11111 11111111124678999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhcCCChHH
Q 001060 384 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ--NGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~--~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
..++.+..+=..++.++.+..-++-+.+++.--++.+ |+++-+....+-...+ +|+..++. ...+........+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~~~~~~- 254 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE--KKELADNIDQEYP- 254 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcccccch-
Confidence 9999999988888999988887888888877777777 7777666665544443 45443332 2222111222211
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 462 AIIKHANMERRL-----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 462 ~~~~~a~~e~r~-----g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
.+....|+ .+-+.|..++-..+... |+..++++-+..+ .+++++|..+.+. +.|..+.
T Consensus 255 ----f~~~l~rHNLVvFrngEgALqVLP~L~~~I---------PEARlNL~iYyL~-q~dVqeA~~L~Kd---l~PttP~ 317 (557)
T KOG3785|consen 255 ----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI---------PEARLNLIIYYLN-QNDVQEAISLCKD---LDPTTPY 317 (557)
T ss_pred ----hHHHHHHcCeEEEeCCccHHHhchHHHhhC---------hHhhhhheeeecc-cccHHHHHHHHhh---cCCCChH
Confidence 22222232 12355666665555554 4455566555445 8899999988764 5777773
Q ss_pred H--HHH--HHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001060 537 L--LEA--LIHFESIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 537 l--~~~--~a~~E~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
- +.. ++.+-...|..+.++.+...|.-+-.+.
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 2 223 3334444566667777777777664443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-06 Score=90.59 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+.-..+.++|++|+..|.++|+ ++|.+.-.+-+-+..+.+.|.++.|++-.+.||..+|+|...|.+++..+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3444455555555555555555 45555544555555555555555555555555555555555555555555
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
..+|++++|+..|++||++. |++...
T Consensus 160 ~~~gk~~~A~~aykKaLeld-P~Ne~~ 185 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELD-PDNESY 185 (304)
T ss_pred HccCcHHHHHHHHHhhhccC-CCcHHH
Confidence 55555555555555555544 444433
|
|
| >KOG0533 consensus RRM motif-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=90.93 Aligned_cols=81 Identities=27% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.-.++|+|.|||+.|+++||+++|..||.++.+ .+.-...|++.|.|-|.|...++|.+|++. +++.++|+.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~--~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRV--AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEE--eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3344889999999999999999999999998884 456677899999999999999999999988 8999999999987
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
...+
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 6543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-06 Score=89.19 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=64.5
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
+.+.++|..|+..|.+||.+.|.++-++...+..|.+.|.++.|++-++.||.+. |...+.|..++..+..+|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 3455666666666666666666666666666666666666666666666666655 566666666666666666666666
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
..|+++ ++++|++...|..+-..
T Consensus 170 ~aykKa-LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKA-LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhh-hccCCCcHHHHHHHHHH
Confidence 666666 56666665444443333
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-07 Score=96.55 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=71.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.-.+|||..+.++.+++||+.+|+-||+|++|.+ .+...++.+|||||++|.+..+...||.. |-+.++|+.|+|-..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEe-eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3578999999999999999999999999999974 67777778999999999999999999977 889999999999765
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
-+
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=78.78 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=100.8
Q ss_pred HcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCH
Q 001060 368 RDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDI 441 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~ 441 (1169)
..++...+...+++.+...|.. ...++.++..+...|++++|...|+.++... ++. ..+++.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 4788899999999999999988 5688889999999999999999999999865 332 45788899999999999
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 442 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 442 ~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
++|+..++.+ .-.+-...++...++++.+.|++++|+..|++||
T Consensus 102 d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI--PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999774 3344566788999999999999999999999885
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-07 Score=95.43 Aligned_cols=94 Identities=20% Similarity=0.388 Sum_probs=86.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 124 YDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 124 ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
|-+....||.+..+|..|+....+.+.+.+.-.+|-.||+.||.++|||+.-|.|+.+..++.+.+|.+|.++|. ++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR---~N 172 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR---MN 172 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc---cC
Confidence 445666899999999999999999999999999999999999999999999999999889999999999999999 55
Q ss_pred CCCHHHHHHHHHHHHHh
Q 001060 204 YLSFPLWDKYIEYEYMQ 220 (1169)
Q Consensus 204 ~~s~~lw~~y~~~e~~~ 220 (1169)
..+..||..|.++|.+.
T Consensus 173 ~~~p~iw~eyfr~El~y 189 (435)
T COG5191 173 SRSPRIWIEYFRMELMY 189 (435)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 66899999999999874
|
|
| >KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=88.53 Aligned_cols=78 Identities=26% Similarity=0.301 Sum_probs=67.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcC-CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~-G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..-+||+.+|..+.+.++...|.+| |.|..++ +-|+++||.+||||||+|++.+.|.-|-+. |+..|.|+.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r-lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR-LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEE-eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 3568999999999999999999988 6676654 458999999999999999999999988876 899999999888654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
-
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 3
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=77.79 Aligned_cols=105 Identities=18% Similarity=0.084 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
+++..+..+.+.|++++|...|.++ +..+|++ ..+++.++.++.+.|+++.|+.+|++++...|+. +..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAF-LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---CcccHHH
Confidence 3444455555555555555555554 3334433 3445555555555555555555555555554321 1123344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 504 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 504 ~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
..++.++.. .|++++|...|+++++..|++..
T Consensus 80 ~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 80 LKLGMSLQE-LGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHH-hCChHHHHHHHHHHHHHCcCChh
Confidence 455555444 55556666666666555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.8e-07 Score=106.86 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=71.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++.|.|+|||+.++..+++.+|..||.|++|+|... ...+.++|||||+|-++.++.+|+.+ ..+.+-||+|.++++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 3689999999999999999999999999999887554 34566899999999999999999987 588899999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 753
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=89.95 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHH----HHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~----~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
+..+|||.||+..+..++|+. +|++||.|.+|. -.++.+.+|-|||.|.+.+.|-.|+.. +|+-+-|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~----a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS----AFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE----ecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 345999999999999999998 999999998742 234678999999999999999999987 89999999999
Q ss_pred EEeccCCCC
Q 001060 1107 IEERRPNTG 1115 (1169)
Q Consensus 1107 V~~~r~~~~ 1115 (1169)
|.+++.+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999886643
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.9e-06 Score=94.59 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
+..-+.-....|++++|+.+|+++|..+|.++.+|+.++.++...|++++|+..+++++.+. |+++.+|+.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 34445555678999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
|++++|+..|+++ ++++|++..+..
T Consensus 84 g~~~eA~~~~~~a-l~l~P~~~~~~~ 108 (356)
T PLN03088 84 EEYQTAKAALEKG-ASLAPGDSRFTK 108 (356)
T ss_pred CCHHHHHHHHHHH-HHhCCCCHHHHH
Confidence 9999999999998 789998865433
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=99.90 Aligned_cols=73 Identities=25% Similarity=0.467 Sum_probs=65.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.|||+||+.+++..+|.++|+.||.|.+|++..+. .| ++|| ||+|++.++|.+||+. ||..++|+.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 39999999999999999999999999999864433 34 8999 9999999999999988 8999999999996543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-05 Score=88.24 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=128.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH
Q 001060 377 KLYERCLIACANYPEYWIRYVLCMEASGS------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 377 ~lyeraL~~~~~~~e~W~~~a~~l~~~g~------------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
.-|++.+..+|.+.+.|+.|+.+-...-. .+.-+.+|+||++.+ |++..+++.+.....+..+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 35778888899999999999987765422 345568999999986 79999999999988888888888
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhCCCccC------------chHHHHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQ------------TLPMLYAQYSRF 509 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~iy~~Al~~~~~~~~~~------------~~~~l~~~~a~~ 509 (1169)
.+.++++ +..+|++..+|..|.++.... -.++.++.+|.++|.......... .+-.++..+.+|
T Consensus 85 ~~~we~~-l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEEL-LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHH-HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8889997 677999999999999988663 357899999999998655322211 223356788999
Q ss_pred HHHHhCCHHHHHHHHHHHhhhc---CCCH------HHHHHHHHhHhh
Q 001060 510 LHLVSRNAEKARQILVDSLDHV---QLSK------PLLEALIHFESI 547 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~~---p~s~------~l~~~~a~~E~~ 547 (1169)
+.. .|-.+.|..+++-.|+.+ |... ..+..+..|-.+
T Consensus 164 l~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS 209 (321)
T PF08424_consen 164 LRQ-AGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWES 209 (321)
T ss_pred HHH-CCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCc
Confidence 887 999999999999999964 3321 344455555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.6e-06 Score=73.18 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
|..++..+...|++++++.+|++++...+.+..+|..++.++...+++++|..+|++++... +....+|..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555555555555555555555444 33444444455555445
Q ss_pred CCHHHHHHHHHHH
Q 001060 439 GDIDGARAAYQLV 451 (1169)
Q Consensus 439 g~~~~A~~~~~~a 451 (1169)
|++++|+..+.++
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0037 Score=68.47 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSS---DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~---d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
+...++..|+-.+..+-. +.+.|.....+ .+ |++++|...|+.+....--+.++|..++-...-+|.|.+|..
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~f--hL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 355677777776655543 45566665554 33 599999999999998777778999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
+-++|-+ .|....|.++.+- ..++-++. -.|..-|+- .....|-..-+. .+.-.+.+|+.+|+|+|..
T Consensus 113 ~~~ka~k-~pL~~RLlfhlah----klndEk~~-~~fh~~LqD----~~EdqLSLAsvh--YmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 113 IAEKAPK-TPLCIRLLFHLAH----KLNDEKRI-LTFHSSLQD----TLEDQLSLASVH--YMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHhhCCC-ChHHHHHHHHHHH----HhCcHHHH-HHHHHHHhh----hHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 9988876 4777777776653 23444333 344444431 112222222222 2224678899999999886
Q ss_pred ch
Q 001060 237 PI 238 (1169)
Q Consensus 237 p~ 238 (1169)
.+
T Consensus 181 n~ 182 (557)
T KOG3785|consen 181 NP 182 (557)
T ss_pred Ch
Confidence 43
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.6e-06 Score=73.51 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+|+..+..+...|++++|..+++++++.. |+...+|+.++.++...+++++|..+|+++ ..+.|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKA-LELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcchhHHHHHHHHHH
Confidence 58889999999999999999999999987 777889999999999999999999999998 7789999899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhh
Q 001060 472 RLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..|++++|..++++++...|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999987653
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=81.14 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=68.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---ceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~~l~V 1107 (1169)
..+++||.+||.++...+|..+|..|---+.+-+...++...-++-+|||+|.+..+|.+|+.+ ||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999998755555444444443334567999999999999999988 899997 567999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
|.++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0056 Score=81.14 Aligned_cols=283 Identities=9% Similarity=0.016 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC----H--HH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----P--EY 392 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~----~--e~ 392 (1169)
+..++...++++.+...+++++.. . ...+. .....+..++..+...|++++++..+++++...... . ..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~--~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAE--L--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc--C--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 445666778899999999998762 0 11111 112233445555677899999999999999764321 1 23
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CC-ChH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKR-------LPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SP-GLL 460 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-------~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----~P-~~~ 460 (1169)
+..++..+...|+++.|...+++++.+.... ...++..++.++...|++++|+..+.++ ..+ .+ ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-l~~~~~~~~~~~~ 612 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG-LEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-HHhhhccCchHHH
Confidence 4456777778999999999999998865321 1234556678888899999999999987 332 12 134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH---
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ-YSRFLHLVSRNAEKARQILVDSLDHVQLSKP--- 536 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~-~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~--- 536 (1169)
..+...+.+....|+++.|...+++++........ ......... .....+...|+.+.|...+............
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 45666788888999999999999999886532110 000001111 1112223378999999998877653322221
Q ss_pred -HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 537 -LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 537 -l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++..++......+. .+.+..++++++....... . .-....+...+.......|+.+.......+..+++...
T Consensus 692 ~~~~~~a~~~~~~g~---~~~A~~~l~~al~~~~~~g--~-~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 692 GQWRNIARAQILLGQ---FDEAEIILEELNENARSLR--L-MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhC--c-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 12344444455555 3446667777765422111 1 11334455566677788899999999999999998654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-05 Score=74.98 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAII 464 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~ 464 (1169)
+.++..+..+..+|++++|...|++++..+ |++ ..+++.++.++.+.|+++.|..+|+++ +...|++ ..+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV-VKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHH-HHHCCCCCcccHHHH
Confidence 344555555555555555555555555444 222 344555555555555555555555554 3334442 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
.++.++...|++++|..+|++++...|
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 555555555555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-06 Score=90.08 Aligned_cols=73 Identities=26% Similarity=0.504 Sum_probs=63.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
..+|||+||+.+.+.+|+.+|..||.|..+.+ ..||+||+|++..+|..||.. ++..|.|..+.|+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 46999999999999999999999999998643 127999999999999999966 89999998899999886
Q ss_pred CCC
Q 001060 1113 NTG 1115 (1169)
Q Consensus 1113 ~~~ 1115 (1169)
..+
T Consensus 73 ~~~ 75 (216)
T KOG0106|consen 73 KRR 75 (216)
T ss_pred ccc
Confidence 543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00019 Score=81.03 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=85.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 364 DFIERDGDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 364 ~~~~~~gd~~~a~~lyeraL~~~~~------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
..+...+++++|...|+++..+.-. -...|...+.++.+. ++++|+.+|++|+.++. .
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~---------------~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR---------------E 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH---------------h
Confidence 3445667778888888877666421 123555555655443 77788888888777652 3
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
.|+...|-.++.+ .+.++... |++++|+.+|++|++..............+...+.+..+ .|+
T Consensus 107 ~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~ 170 (282)
T PF14938_consen 107 AGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGR 170 (282)
T ss_dssp CT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-
T ss_pred cCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCC
Confidence 4444444333333 24444444 566666666666666544322211222345555666554 666
Q ss_pred HHHHHHHHHHHhhhcCCC-------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001060 517 AEKARQILVDSLDHVQLS-------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s-------~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
+++|.++|++.....-++ ..++...+...+..++ .-.++..|+++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC
Confidence 666666666665532111 1233333333444444 334556666655443
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.8e-06 Score=98.71 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=66.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+|||+||++++|.++|..+|.+.|.|+++.|..+.+..+ .+.|||||+|.+.++|++|++. +|+.|+|+.|.|....
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999987654433221 2459999999999999999998 7999999999998877
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.9e-05 Score=87.55 Aligned_cols=166 Identities=8% Similarity=0.063 Sum_probs=129.3
Q ss_pred HHH--HHHHHHH--HHcC---ChHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 001060 357 ENW--HNYLDFI--ERDG---DFNKVVKLYERCL---IACANYPEYWIRYVLCMEAS---------GSMDLAHNALARAT 417 (1169)
Q Consensus 357 ~~W--~~yl~~~--~~~g---d~~~a~~lyeraL---~~~~~~~e~W~~~a~~l~~~---------g~~e~A~~vl~rAl 417 (1169)
+.| ..|+.-. ...+ +.++|+.+|.||+ ..+|.+...|..++.++... ....+|+...+||+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 778 5565422 2222 4558999999999 88999888777777665432 23567888999999
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~ 497 (1169)
++. +.++.++..+|.+..-.++++.|...|+++ ..++|+...+|+.++.+..-.|+.++|+..+++|+.+.|-+-
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA-~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~--- 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQA-KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR--- 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHH-hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh---
Confidence 987 899999999999999999999999999999 899999999999999999999999999999999999997431
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 498 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 498 ~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
...+...|.+.++ ..-+++|.++|-+-.+.
T Consensus 407 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 407 -KAVVIKECVDMYV--PNPLKNNIKLYYKETES 436 (458)
T ss_pred -HHHHHHHHHHHHc--CCchhhhHHHHhhcccc
Confidence 1223333443433 45588888888765443
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=89.92 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=66.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCeeece--EEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGR--QVYIE 1108 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~-~~~i~g~--~l~V~ 1108 (1169)
.+++|||-|...-+|+|++.+|..||.|.+|.+ + ....|.+|||+||.|.+..+++.||.. + ..++-|- .|.|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tv-l-rg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTV-L-RGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEE-e-cCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 489999999999999999999999999999875 3 445688999999999999999999987 4 3455553 48888
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
++.+.
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 77654
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.7e-06 Score=98.40 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=67.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
-+++||||+|+..+++.||.++|+.||.|.+|.+ + .++|||||......+|.+|+.+ +.+.+.++.|+|.++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-I------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee-c------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3689999999999999999999999999999643 2 2568999999999999999987 789999999999988
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
..+.
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 7654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.6e-06 Score=73.98 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRR 191 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~ 191 (1169)
+++++.|+.+|+++++..|. +..+|+.+|..+.+.|++++|+.++++ +...+.+.+.++.+++.+. ..+++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHHH
Confidence 46899999999999999995 578899999999999999999999999 8888888888888899888 8999999999
Q ss_pred HHHHH
Q 001060 192 LFERG 196 (1169)
Q Consensus 192 ~~erA 196 (1169)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99975
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.9e-05 Score=74.36 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC---HHHHHH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---VDIWLH 174 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---~~lw~~ 174 (1169)
.+..++..+. .++..++...+++++..+|.+ ...++.++......|++++|...|++++...|+. .-.++.
T Consensus 14 ~y~~~~~~~~---~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQALQ---AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3444444443 368899999999999999999 6778888999999999999999999999987543 235667
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
++.+++ ..+++++|+..++.. .........+....+.....|+++.|+..|+++|
T Consensus 91 LA~~~~-~~~~~d~Al~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILL-QQGQYDEALATLQQI----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777777 789999999999662 2333456788888899999999999999999875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=72.63 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
.|++++|+.+|++++...|. +..+|+.+|.++.+.|++++|..++++ .... +.+..+++.+|+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46788888888888888874 466788888888888888888888888 5544 5566777777888888888888888
Q ss_pred HHHHH
Q 001060 447 AYQLV 451 (1169)
Q Consensus 447 ~~~~a 451 (1169)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88763
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-06 Score=91.90 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||++.|+..|++-|..||.|++++| + ..|+++| .|.|.++++|++|+.. ++..++||.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-m---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-M---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhh-h---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35688999999999999999999999999999876 2 2456666 9999999999999998 89999999999975
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=85.73 Aligned_cols=204 Identities=15% Similarity=0.137 Sum_probs=139.1
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-A-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~-~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
+..+...+.|+.++....+.+.++..++..+... . .++-+-+-.+.++...|++++|+.++.+. .+.+....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4556777888888765556666666655544332 2 22333344445555678999988777553 45677778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAII--KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 508 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~--~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~ 508 (1169)
...++.+.++++.|.+.+++. .+++.+..-+.+ .|+.+....+++.+|.-+|+...+..+ ..+.++...+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~-~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~------~t~~~lng~A~ 209 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNM-QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG------STPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC------CCHHHHHHHHH
Confidence 888999999999999999997 777777654433 333443334469999999999776653 22667777777
Q ss_pred HHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 509 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 509 ~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.... .|++++|.+++++|++.+|.+...+.+.+-+....|.+. +.+++++.......|+.+
T Consensus 210 ~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~--~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 210 CHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT--EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC--HHHHHHHHHCHHHTTTSH
T ss_pred HHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHhCCCCh
Confidence 7666 999999999999999999999999999888888877652 234555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=76.03 Aligned_cols=119 Identities=17% Similarity=0.091 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
.....++.++.++...|++++|..+|++++.+. ++ ...+|+.++.++...|++++|+.+|.++ +.+.|++...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQA-LELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHH
Confidence 455678888888888899999999999998765 33 2468888888899999999999999988 678888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
.++.++...|+...+...++.++. .+++|++++++++...|++.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchhH
Confidence 888888888876665544443321 25667788888888888763
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7e-06 Score=86.55 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=66.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|+||||.+.++-.+|+..|.+||+|..|+| + |+|+||.|+-.++|..||.. ++.+|.|++++|...
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi-v--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI-V--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee-e--------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4578999999999999999999999999999885 3 36999999999999999976 899999999999887
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
..|-+
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 66543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=68.80 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 169 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 169 (1169)
.++..+.. .|++++|+++|++++..+|.+..+|..++.++...|++++|+.+|++++...|.++
T Consensus 2 ~~a~~~~~--~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ--QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH--CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555555 35888888888888888888888888888888888888888888888888888663
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=68.58 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhccC
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-SMDKVVEVYERAVQGVT 166 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-~~e~A~~l~eraL~~~P 166 (1169)
+...|..++..+... +++++|+..|+++|..+|++..+|..++..+.+.| ++++|++.|+++|++.|
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 566788888877774 58888888888888888888888888888888887 68888888888887765
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=69.16 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
+|++++|.++|++++..+|++..+|+.++.++++.|++++|+.++++++...|++..+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999988888877664
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-05 Score=76.80 Aligned_cols=128 Identities=11% Similarity=0.017 Sum_probs=99.2
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 87 RLWNIVKANSS--DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERA 161 (1169)
Q Consensus 87 ~l~~al~~nP~--d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~era 161 (1169)
.+...+..++. ....+..++..+.. .+++++|..+|++++...|+. ..+|..++.++.+.|++++|+..|+++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQA--DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444555554 45556788888777 469999999999999988764 468999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 162 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 162 L~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
+...|.+...|..++..+. ..++...+..-++.++. .+++|..+|++++...+.+
T Consensus 99 l~~~p~~~~~~~~lg~~~~-~~g~~~~a~~~~~~A~~-----------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYH-KRGEKAEEAGDQDEAEA-----------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHhCcccHHHHHHHHHHHH-HcCChHhHhhCHHHHHH-----------------------HHHHHHHHHHHHHhhCchh
Confidence 9999999999998888777 66776666655555553 3566777888888775554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.6e-05 Score=80.90 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc---CCHHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN---GDIDGARAA 447 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~---g~~~~A~~~ 447 (1169)
+.++.+.-.+.-|..+|.+.+-|..++.++..+|+++.|...|.+|+++. +++++++..|+..+..+ ....+++.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 46678888999999999999999999999999999999999999999988 89999999999887653 345779999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
|+++ +.++|.+....+.++.-+...|++.+|...++..+...|.+
T Consensus 216 l~~a-l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 216 LRQA-LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9998 88999999999999999999999999999999999998754
|
|
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.4e-06 Score=85.91 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCCCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEE
Q 001060 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1105 (1169)
Q Consensus 1027 ~~~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l 1105 (1169)
.+.+.+-.+||.|.|..+++++.|-..|++|-.....++ ++++.||+++|||||.|.+..++..|+.. +|..++.|.|
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv-iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV-IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccc-cccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 344556689999999999999999999999987776665 78999999999999999999999999976 7999999987
Q ss_pred EEE
Q 001060 1106 YIE 1108 (1169)
Q Consensus 1106 ~V~ 1108 (1169)
+..
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=68.44 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~ 490 (1169)
+.+|+.+|..+...|++++|+..|.++ ++++|++..+|+.++.++.++| ++++|+..|+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~a-i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKA-IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445556666666666666666666665 5556666666666666666666 4666666666666554
|
... |
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=87.47 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=69.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeee------eEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD------GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~------~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
-.+.|||.|||.++|.+++.++|++||-|.+. +|.+.....|+.||-|.|.|-..+++.-|+.. ++..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35789999999999999999999999988763 23333344589999999999999999999998 799999999
Q ss_pred EEEEecc
Q 001060 1105 VYIEERR 1111 (1169)
Q Consensus 1105 l~V~~~r 1111 (1169)
|+|+.++
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=89.05 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=111.1
Q ss_pred ChhcHHHHHHHHHHH--HHc---CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 001060 352 SVTELENWHNYLDFI--ERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG--------SMDLAHNALARATH 418 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~--~~~---gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g--------~~e~A~~vl~rAl~ 418 (1169)
-+.+++.|..|+.-. ... ++..+++.+|++++..+|.+...|-.++.++.... +...+...+++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456678888886633 333 34678999999999999999998888776554321 23455566666665
Q ss_pred H-hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 419 V-FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 419 ~-~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+ ..+..+.+|..++......|++++|...|+++ ++++|+ ...|..++.++...|+.++|...|++|+.+.|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA-l~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKA-IDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4 13567789999999988999999999999999 899995 789999999999999999999999999999874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.7e-05 Score=78.15 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
..+|+.++.++...|++++|...|++++.+. ++ ...+|..++.++...|++++|+..|+++ +.+.|.+...|..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A-l~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA-LERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCcHHHHHHH
Confidence 5677777877777788888888888887765 33 3457777888888888888888888887 66777777777777
Q ss_pred HHHHH-------HcCCHH-------HHHHHHHHHHHhhh
Q 001060 467 ANMER-------RLGNLE-------DAFSLYEQAIAIEK 491 (1169)
Q Consensus 467 a~~e~-------r~g~~e-------~A~~iy~~Al~~~~ 491 (1169)
+.++. ++|+++ ++..+|++++...|
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 77776 666766 44455555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.8e-05 Score=86.49 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=107.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC
Q 001060 361 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440 (1169)
Q Consensus 361 ~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~ 440 (1169)
.++.+....+.++.++.+|++..... ++++..++.++...++-.+|..++.++++.. |.+..++...++|+...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 34566667789999999999988665 5688889998888888899999999999877 8889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 441 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 441 ~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
++.|+.+.+++ +++.|+....|..++.++..+|+++.|...+..
T Consensus 250 ~~lAL~iAk~a-v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 250 YELALEIAKKA-VELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999998 899999999999999999999999999977663
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.025 Score=63.24 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=193.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHH
Q 001060 113 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD--HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIR 190 (1169)
Q Consensus 113 ~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~--~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar 190 (1169)
+.|+-..||+.-.+.-.+--.+.+..+.+.+ .-+-.|+++.|++-|+-++. +|.--.+-+.-+.++-...|+.+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4577888888888877666666565555543 44456999999999999987 46554443333333334679999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHH
Q 001060 191 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 270 (1169)
Q Consensus 191 ~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~ 270 (1169)
++-+++-...+. -.-.|...++-....|+|+.|+++.+.........-. .+
T Consensus 175 ~yAe~Aa~~Ap~---l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~----------------------~a---- 225 (531)
T COG3898 175 HYAERAAEKAPQ---LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD----------------------VA---- 225 (531)
T ss_pred HHHHHHHhhccC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh----------------------hH----
Confidence 999999886554 3345666666666679999999888765433110000 00
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p 350 (1169)
+..+-.+......-.-.-+...++..-..++|
T Consensus 226 ----------------------------------------eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K-------- 257 (531)
T COG3898 226 ----------------------------------------ERSRAVLLTAKAMSLLDADPASARDDALEANK-------- 257 (531)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--------
Confidence 00000000000000000112233333444555
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HhhccChHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH--VFVKRLPEIH 428 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~--~~~p~~~~l~ 428 (1169)
+.|.-...-..-...+-+.|+.-+.-.++|.+.+..|+ +++|..|... +.|+. +..-++|+-+ ...|++.+..
T Consensus 258 L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~gdt--a~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 258 LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--RSGDT--ALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cCCCc--HHHHHHHHHHHHhcCccchHHH
Confidence 55555555555556667789999999999999988885 8999999863 45643 4444555433 3347888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhh
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~iy~~Al~~~~ 491 (1169)
+..++.....|++..||.--+.+ ....|. ..+++.+++++.-. |+-.+++..+-+++....
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa-~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAA-AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHH-hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 99998888999999999888876 566774 45788889998776 999999999999998653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=84.77 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=109.2
Q ss_pred CCCCCchHHHHHHHHH---HhCCCCHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001060 77 SVPAMSGEEDRLWNIV---KANSSDFSAWTALLEETEKL-------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146 (1169)
Q Consensus 77 ~~~~~~~~~~~l~~al---~~nP~d~~aw~~L~~~~~~~-------~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~ 146 (1169)
++.....++..|.+|+ .++|....++-.|+...... .+....+|+++-+++++++|.+......++....
T Consensus 270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456778899999999 99999888887776655433 1357788999999999999999999999999888
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 147 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 147 ~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
-.++++.+..+|+|++.+.|++.+.|+.++-+.. ..|+.++|++.+++|++..|..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchh
Confidence 8889999999999999999999999999988777 8899999999999999966543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=82.01 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
-+.-+..+-+.|++..|...|+||+....+.. .-+.++...+. ++. ..+|+.+|.++.+.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~k------~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--ALK------LACHLNLAACYLKL 270 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HHH------HHHhhHHHHHHHhh
Confidence 34456677788899999999999885433211 11112222111 111 23667788888899
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
+++.+|+..+.++ +++.|+|..+.++.+..+..+|+++.|+..|++++++.|.+ ..+-..++.+--+.....+
T Consensus 271 ~~~~~Ai~~c~kv-Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 271 KEYKEAIESCNKV-LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIREYEE 343 (397)
T ss_pred hhHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 78899999999999999999999999999999999998754 3455555555444333445
Q ss_pred HHHHHHHHHhhhcC
Q 001060 519 KARQILVDSLDHVQ 532 (1169)
Q Consensus 519 ~Ar~i~~kAl~~~p 532 (1169)
+.+++|.+.+....
T Consensus 344 kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 344 KEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccc
Confidence 56777777776543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.9e-05 Score=66.89 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=47.5
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
+.|++++|+.+|++++...|.+.++|+.++.++.+.|++++|+.++++++... |+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHHHHHHHHhc
Confidence 46777777777777777777777777777777777777777777777777766 555666666654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.2e-05 Score=64.69 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
.+|..+.+.|++++|+.+|+++ ++.+|++..+|+.++.++.++|++++|+..|+++++..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~-l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQA-LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHH-HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4566777788888888888887 6777888888888888888888888888888888877653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.038 Score=59.60 Aligned_cols=80 Identities=11% Similarity=-0.103 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+.++..+++++....++.|.+-...-.++-.+....+|..|.++|++.-..+|.-...-+.+++-+. ..+.+..|.++.
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY-~A~i~ADALrV~ 101 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY-KACIYADALRVA 101 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhcccHHHHHHH
Confidence 3589999999999999999888888888999999999999999999999999977776666676666 455566665554
Q ss_pred H
Q 001060 194 E 194 (1169)
Q Consensus 194 e 194 (1169)
.
T Consensus 102 ~ 102 (459)
T KOG4340|consen 102 F 102 (459)
T ss_pred H
Confidence 4
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.1e-05 Score=87.69 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=63.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..|-+++||+.||++||.+||+-.=.| ...|.+.....+++.|-|||.|++.+.+++|+..+...|+.|-|.|..+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv-~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIV-PDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCccc-ccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 578899999999999999999976444 3345444555678889999999999999999999989999999999654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=82.64 Aligned_cols=123 Identities=14% Similarity=0.009 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
+..+..++..+++++.++..|++..+ .+| +++..++..+...++..+|+.++.++|...|.+.+++...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~--------~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE--------RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh--------cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34445566777889999999999877 333 4566677777777888899999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+.+|...++++.|+.+.++|+.+. |..-..|..++.++.+.|+++.|+..++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999987 899999999999999999999999887753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00025 Score=73.36 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=84.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
.+...|..++......|++++|+..|++++...+.. ..+|..++.++...|++++|+.+|++++.+. |.....|..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 456778999999899999999999999999886653 4589999999999999999999999999987 777888888
Q ss_pred HHHHHH-------HcCCHHHHHH-------HHHHHhhhcCCC
Q 001060 431 AARFKE-------QNGDIDGARA-------AYQLVHTETSPG 458 (1169)
Q Consensus 431 ~a~~~e-------~~g~~~~A~~-------~~~~a~~~~~P~ 458 (1169)
++.++. ..|++++|+. +|+++ ...+|.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a-~~~~p~ 152 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA-IALAPG 152 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH-HHhCcc
Confidence 888777 7778775554 44454 455664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00037 Score=84.54 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=108.2
Q ss_pred HhccCCHHHHHHHHHHHHH--c---CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 001060 384 IACANYPEYWIRYVLCMEA--S---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--------GDIDGARAAYQL 450 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~--~---g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~--------g~~~~A~~~~~~ 450 (1169)
..-+.+.+.|-.|..-+.. . ++.+.|+.+|++|+++. |++..+|-.++..+... .++..+.....+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446677776666554332 2 24778999999999988 89988888766654332 123455555555
Q ss_pred Hhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 451 VHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 451 a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
+ .. ..|....++..++......|++++|...|++|+.+.+. ...|..+++++.. .|+.++|...|++|+
T Consensus 410 a-~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~-~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 I-VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYEL-KGDNRLAADAYSTAF 480 (517)
T ss_pred h-hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4 33 36777788888888888899999999999999999852 4578888888776 999999999999999
Q ss_pred hhcCCCHH
Q 001060 529 DHVQLSKP 536 (1169)
Q Consensus 529 ~~~p~s~~ 536 (1169)
.++|....
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99999874
|
|
| >KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.3e-05 Score=81.30 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=67.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|+-..++++.|.++|-+.|+|.+|. +++.+.++.| ||||+|++.-++.-|+++ ||..+-++.+.|....
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~--ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVG--IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEe--CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 38999999999999999999999999998854 5666666777 999999999999999998 8999999998887654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=78.76 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=68.4
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHH
Q 001060 390 PEYWIRYVLCM-EASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEA 462 (1169)
Q Consensus 390 ~e~W~~~a~~l-~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~ 462 (1169)
...|+..+..+ .+.|++++|+..|+..++.+ |++ +.+++.+|.++...|++++|+..|+++ ++..|+ ..++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v-v~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV-VKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCcchhHH
Confidence 45555555544 34567777777777777766 444 467777777777777777777777776 544555 4566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++++.++..+|+.++|+.+|++++...|+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777777777777777777777777777664
|
|
| >KOG1995 consensus Conserved Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.4e-05 Score=82.51 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=72.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeee------E-EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~------i-~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
...-+|||-+||..+++.+|.++|.+||.|+.-+ | +.+++.|++.||-|.|.|+|...|+.||.. ++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3567899999999999999999999999987532 1 134678999999999999999999999988 8999999
Q ss_pred eEEEEEeccCCCC
Q 001060 1103 RQVYIEERRPNTG 1115 (1169)
Q Consensus 1103 ~~l~V~~~r~~~~ 1115 (1169)
..|+|..+..+.+
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999987766553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0027 Score=69.72 Aligned_cols=165 Identities=10% Similarity=0.002 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHL 429 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~---W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~ 429 (1169)
...+...+.-..+.|++++|+..|++++...|..+.. .+.++..+.+.+++++|+..|++.++.+ |++ +.+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHH
Confidence 4445555665567899999999999999999977643 3667777788999999999999999999 544 45666
Q ss_pred HHHHHHHHcC---------------CH---HHHHHHHHHHhhhcCCChHHH-----------------HHHHHHHHHHcC
Q 001060 430 FAARFKEQNG---------------DI---DGARAAYQLVHTETSPGLLEA-----------------IIKHANMERRLG 474 (1169)
Q Consensus 430 ~~a~~~e~~g---------------~~---~~A~~~~~~a~~~~~P~~~~~-----------------~~~~a~~e~r~g 474 (1169)
..|......+ |. .+|...|++. ++..|+..-. -+..+.++.+.|
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6665532222 22 3566778876 7778874321 245667788999
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
.+..|..-++.+++..|+. +..++....+...... .|..++|.++...
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t---~~~~eal~~l~~ay~~-lg~~~~a~~~~~~ 237 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDT---QATRDALPLMENAYRQ-LQLNAQADKVAKI 237 (243)
T ss_pred chHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHH-cCChHHHHHHHHH
Confidence 9999999999999988763 3445555555566555 8889988887653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00048 Score=77.73 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-
Q 001060 310 AEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACA- 387 (1169)
Q Consensus 310 ~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~- 387 (1169)
.+.-..+.......|+..+++++|...|+++..- +.+--++ .-...|..-+..+.+ .++++|+..|++++...-
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~---~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADC---YEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH---HHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHh
Confidence 3444445566678899999999999999998751 1111121 122334444445444 499999999999998743
Q ss_pred -CC----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-
Q 001060 388 -NY----PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTET- 455 (1169)
Q Consensus 388 -~~----~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~- 455 (1169)
.. ..+...++.+++.. |+++.|+..|++|+.++.... ..++...+.++.+.|++++|..+|+++....
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 22 35888999999888 899999999999999885432 4567778999999999999999999973321
Q ss_pred C-C----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 456 S-P----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 456 ~-P----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
. + +.-..++..+.+....|+.-.|...|++....+|.
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1 1 11235677777888889999999999999988753
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.9e-05 Score=80.82 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~-e~~g~~~~A~~~~~~a~ 452 (1169)
+...+|.|+....+.++.+|..|+.|..+.+.+.+..++|..+++.+ |.+.++|+..+.++ +..++++.+|.+|.++
T Consensus 91 k~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g- 168 (435)
T COG5191 91 KKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKG- 168 (435)
T ss_pred eeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhh-
Confidence 56777888888899999999999999999999999999999999999 89999999977665 5689999999999998
Q ss_pred hhcCCChHHHHHHHHHHHH
Q 001060 453 TETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e~ 471 (1169)
+.++|+++.+|..|..+|.
T Consensus 169 lR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 169 LRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred hccCCCCchHHHHHHHHHH
Confidence 8999999999999988874
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00048 Score=76.14 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred hHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001060 425 PEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500 (1169)
Q Consensus 425 ~~l~~~~a~~~-e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~ 500 (1169)
...++..|..+ .+.|++++|+..|++. ++.+|+. ..+++.++.++...|++++|+..|++++...|+. +..+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~f-l~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~ 217 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNF-VKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAA 217 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchh
Confidence 34555555443 4579999999999997 7889987 4789999999999999999999999999998753 4557
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
..+...+.++.. .|+.++|+++|++.++.+|++...-
T Consensus 218 dAl~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 218 DAMFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 788888888766 9999999999999999999987443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=72.30 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ 174 (1169)
.+...+.-+.++--+-. +|++++|.++|.-+...+|.+.+||+.++..+...+++++|+.+|..|....++++...++
T Consensus 33 s~~~le~iY~~Ay~~y~--~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYN--QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 33445555555544444 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 001060 175 YCIFAINTYGDPETIRRLFERGLA 198 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~ 198 (1169)
.+.+++ ..++.+.|+..|+.++.
T Consensus 111 agqC~l-~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQL-LMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHh
Confidence 999888 89999999999999998
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.2e-05 Score=86.87 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=64.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
.++||| +++|+.+|.++|+++|+|.+++| .++. | +-|||||.|.++.+|.+||.. |...+.|++|+|-+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rv-c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRV-CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEE-eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 368999 89999999999999999999875 4455 5 899999999999999999988 78889999999977654
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 3
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0031 Score=67.34 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh---HHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---EIHLFA 431 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~---~l~~~~ 431 (1169)
.+...+.-..+.|++.+|+..|++++...|.. +++++.++..+.+.|+++.|+..|++.++.+ |+++ .+++..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHH
Confidence 34445555578899999999999999887754 4688888888888899999999999999988 5543 455555
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001060 432 ARFKEQN-----------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500 (1169)
Q Consensus 432 a~~~e~~-----------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~ 500 (1169)
|...... +...+|+..|+.. ++..|+..- ..+|...+..+.... .
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-i~~yP~S~y--------------~~~A~~~l~~l~~~l---------a 141 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEEL-IKRYPNSEY--------------AEEAKKRLAELRNRL---------A 141 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHH-HHH-TTSTT--------------HHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHH-HHHCcCchH--------------HHHHHHHHHHHHHHH---------H
Confidence 5433221 2233455555554 445555321 122222222211111 0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
.--...++|.++ .|.+..|..-|+..++..|++...-+.+..+...
T Consensus 142 ~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 142 EHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 111345777666 8999999999999999999998766555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.043 Score=57.68 Aligned_cols=224 Identities=18% Similarity=0.126 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hccCCHHHHHHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLI--ACANYPEYWIRYVLCMEA 402 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~--~~~~~~e~W~~~a~~l~~ 402 (1169)
...+..+...+...+. .... ...............+++..++..+..++. ..+.....|...+.++..
T Consensus 36 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 36 LGELAEALELLEEALE--------LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred HhhHHHHHHHHHHHHh--------cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 3445555555655554 2221 234555666666788999999999999997 677888899999999999
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHH-HHHHcCCHHHHHHHHHHHhhhcCC---ChHHHHHHHHHHHHHcCCHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAAR-FKEQNGDIDGARAAYQLVHTETSP---GLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~-~~e~~g~~~~A~~~~~~a~~~~~P---~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
.+++..+...+..++... +.....+..... ++...|+++.|...|.++ ....| .....+..........++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 108 LGKYEEALELLEKALALD-PDPDLAEALLALGALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HhhHHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 999999999999998765 444455555565 788999999999999998 55777 455666666666778899999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHH
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 558 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r 558 (1169)
++..+.+++...+.. ....+..++..+.. .++++.|...+.+++...|.....+..........+. .+.+.
T Consensus 186 a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 256 (291)
T COG0457 186 ALELLEKALKLNPDD-----DAEALLNLGLLYLK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEAL 256 (291)
T ss_pred HHHHHHHHHhhCccc-----chHHHHHhhHHHHH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHH
Confidence 999999999987531 23455566666555 7789999999999999999844333333222223332 45567
Q ss_pred HHHHHHhhcCC
Q 001060 559 QLVDKFLMSNS 569 (1169)
Q Consensus 559 ~l~eral~~~~ 569 (1169)
..+.+++...+
T Consensus 257 ~~~~~~~~~~~ 267 (291)
T COG0457 257 EALEKALELDP 267 (291)
T ss_pred HHHHHHHHhCc
Confidence 77777777654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00073 Score=65.07 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFA 431 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~---~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~ 431 (1169)
+++..+..+...|+.++|+.+|++++..... -...++.++..+...|++++|..+|+.++..+ |+ +..+..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 4667777778889999999999999986433 24689999999999999999999999999877 66 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHh
Q 001060 432 ARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
+..+...|+.++|...+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999998887763
|
|
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.3e-05 Score=85.83 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=70.1
Q ss_pred ceEEE-EecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1033 VKSVY-VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~-V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++| |+||++.+++++|+.+|..+|.|..+++ ..+..+|.++|||||+|.+......++......+.++.+.|++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~-~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRL-PTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeecc-CCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 35565 9999999999999999999999999775 346678999999999999999999998766778889999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+++
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0006 Score=76.72 Aligned_cols=159 Identities=17% Similarity=0.115 Sum_probs=116.7
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC--CHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG--DIDG 443 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g--~~~~ 443 (1169)
+...|+++.|+.++.++ .+.|+-.-.+.++.+.++++.|.+.++.+.+.. .+..-+.+.-+.+....| ++.+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhHHH
Confidence 34568887777766654 567888888899999999999999999887654 444444444333444444 6999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH-HHHHH
Q 001060 444 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA-EKARQ 522 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~-e~Ar~ 522 (1169)
|..+|+.+ .+..+..+.++...+.+...+|++++|..++++|+..++ ..+.++++++-+... .|+. +.+.+
T Consensus 186 A~y~f~El-~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~------~~~d~LaNliv~~~~-~gk~~~~~~~ 257 (290)
T PF04733_consen 186 AFYIFEEL-SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP------NDPDTLANLIVCSLH-LGKPTEAAER 257 (290)
T ss_dssp HHHHHHHH-HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C------CHHHHHHHHHHHHHH-TT-TCHHHHH
T ss_pred HHHHHHHH-HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHH-hCCChhHHHH
Confidence 99999997 666777889999999999999999999999999998764 347788888777665 6765 77888
Q ss_pred HHHHHhhhcCCCHHHH
Q 001060 523 ILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 523 i~~kAl~~~p~s~~l~ 538 (1169)
.+.......|.++.+-
T Consensus 258 ~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 258 YLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHCHHHTTTSHHHH
T ss_pred HHHHHHHhCCCChHHH
Confidence 8888777888776443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00063 Score=66.39 Aligned_cols=108 Identities=16% Similarity=0.355 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHh
Q 001060 118 VKIRRVYDAFLAEFP---LCYGYWKKYADHEARV----GSMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAIN 181 (1169)
Q Consensus 118 ~~Ar~~ye~~l~~~P---~~~~~W~~~a~~e~~~----~~~e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~ 181 (1169)
++.++.|+..|..+. +--+.|..|+.+.... +.-.....+++||+..+..+ +.+|+.|+.+..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 456788888888776 6679999999998876 45677889999999988654 677888877532
Q ss_pred hcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 182 TYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 182 ~~~~~e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
.++.+|..+... +|.. ...+|..|+.+++..+++++|..||+++|
T Consensus 81 ------~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ------DPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ------HHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 788899988773 4554 78999999999999999999999999875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0035 Score=68.79 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH---
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE--- 461 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l---~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~--- 461 (1169)
..++.++..+.-+...|++++|+..|++++..+ |..+.+ .+.++..+.+.+++++|+..|++. ++++|++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f-i~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF-IRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCcCCCchHH
Confidence 456778888887888999999999999999988 665544 377888889999999999999997 788888654
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhhCCCccCchHH----H-------HHHHHHHHHH
Q 001060 462 AIIKHANMERRLG---------------N---LEDAFSLYEQAIAIEKGKEHSQTLPM----L-------YAQYSRFLHL 512 (1169)
Q Consensus 462 ~~~~~a~~e~r~g---------------~---~e~A~~iy~~Al~~~~~~~~~~~~~~----l-------~~~~a~~~~~ 512 (1169)
+++..+.....++ + ..+|...|++.+...|+....+.... + -...++|.++
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666665432222 1 34677899999999986433221111 1 1234677776
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
.|.+..|..=++..++..|++...-+.+..+...
T Consensus 188 -~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 188 -RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred -cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 8899999999999999999998776666555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=62.49 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ 174 (1169)
++++++|++++++++..+|.+...|..++.++.+.|++++|++.|+++++..|.+.+.-..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999887766443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=66.59 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=93.6
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
+....++....++--.-..|+++.|..+|.-....++.+++.|+-++.++..++.++.|+..|..|..+. ++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccch
Confidence 4566677677776655688999999999999999999999999999999999999999999999999876 789999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
.|.++...|+.+.|+..|+.+ ++ .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a-~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELV-NE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHH-Hh-CcchHH
Confidence 999999999999999999997 44 555433
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=82.67 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=65.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
...-|-+++|||++|++||.+||+.|+ |..+ +..+.+|+..|-|||+|.+.+++++|++++...++.|-|.|..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~---~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENL---EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEE---EEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 457788999999999999999999996 6663 34566799999999999999999999999888999999999654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.012 Score=61.98 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH-H
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL-C 399 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~-~ 399 (1169)
...+...+.+..++..+...+.. ...+.....|...+.+....+++..++..+..++...+.....+..... +
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33455566667777777766541 1234455677788888888899999999999999988777666666666 6
Q ss_pred HHHcCChHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHcCC
Q 001060 400 MEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMERRLGN 475 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~ 475 (1169)
+...++++.|...|.+++... + .....+..........++++.|...+.++ ....+. ....+...+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKA-LKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH-HhhCcccchHHHHHhhHHHHHccc
Confidence 788999999999999998743 4 34555555666677889999999999998 677888 68889999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
++.+...+..++...+. ....+...+..+. ..+.++++...+.++++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPD------NAEALYNLALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcc------cHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999998753 1234555555555 478899999999999999987
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.12 Score=55.89 Aligned_cols=409 Identities=12% Similarity=0.062 Sum_probs=202.0
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...+++.+....+.+|.+..+...|+-.+-.. .++..|-.+|+.+...+|.-..|-+.++.-..+.+-+..|..+...
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45677788888899999999999999887764 4899999999999999999999999999999999999998877655
Q ss_pred HHhccCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 161 AVQGVTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~---~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
+.. +..|.-.-+++... ..++...+|.+.++.-. .+-.... ..-.-...+.|+++.|.+-|+.+++..
T Consensus 104 ~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~--in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQ--INLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchh--ccchheeeccccHHHHHHHHHHHHhhc
Confidence 443 23333222222110 34666677777664321 1111111 111222233477888888888888873
Q ss_pred hhhHHHHHHH-HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCc---chHHHH
Q 001060 238 IQQLDRYFSS-FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL---TEAEEL 313 (1169)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~ 313 (1169)
..+-...|+. +..|....--+.+.-..|.+ .+-+.. -.|+. .+.+.+.++.-...- .....+
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIi--eRG~r~-HPElg-----------IGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEII--ERGIRQ-HPELG-----------IGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHH--Hhhhhc-CCccC-----------ccceeccCchhcccchHHHHHHHH
Confidence 3222222222 22221111000000000000 000000 00110 001111111100000 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W 393 (1169)
-...+....++...+.++.|.+.+-+.=-|.- ..+|| -..++++-. .-.+++..-..-+.=.|..+|.-.+..
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE---~elDP---vTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE---EELDP---VTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCccc---ccCCc---hhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHH
Confidence 22334445567777888877766654322211 01222 233444322 122333322222223344456555666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-H
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-R 471 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e-~ 471 (1169)
-.+..++.++.-++.|.+++..-...--. -++-++..+-.+-..+-..++|.+-++++...+.. .+....+.+. .
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRklAi~vQe~ 390 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66666666666677777776432111000 01111111212222234455555554443111000 0111111111 1
Q ss_pred HcC----CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 472 RLG----NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 472 r~g----~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
|.. .+..++.-|+.+++..- | +...++.+.|. ..++..+.++|++..+.+.++
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~YL--------P-VlMa~AkiyW~-~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKYL--------P-VLMAQAKIYWN-LEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHhhcc-ccccHHHHHHHHHHHhhhccc
Confidence 111 13345556666666541 2 45567777777 788888999998888877654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0079 Score=60.62 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=111.7
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
+.-|+++...--.+.+..-|. ..-.++++..+...|++.+|+..|+.++.-.--+++.+.+-+++.....++..+|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 334555554444444544443 3456777888888899999999998887643357788888888888888999999999
Q ss_pred HHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH---
Q 001060 448 YQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ--- 522 (1169)
Q Consensus 448 ~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~--- 522 (1169)
++++ .+.+|. .++-.+.++..+..+|.+..|+..|+.++...|+ +..-+.|+.|+.+ .|...+|+.
T Consensus 147 Le~l-~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~-qgr~~ea~aq~~ 217 (251)
T COG4700 147 LEDL-MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAK-QGRLREANAQYV 217 (251)
T ss_pred HHHH-hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-hcchhHHHHHHH
Confidence 9987 566665 3445677788888889999999999999988764 5677788888887 776666544
Q ss_pred -HHHHHhhhcC
Q 001060 523 -ILVDSLDHVQ 532 (1169)
Q Consensus 523 -i~~kAl~~~p 532 (1169)
+++++.+..|
T Consensus 218 ~v~d~~~r~~~ 228 (251)
T COG4700 218 AVVDTAKRSRP 228 (251)
T ss_pred HHHHHHHhcch
Confidence 4444444433
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=78.18 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCC--eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC-CCeeeceEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS-PIQLAGRQVYI 1107 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~-~~~i~g~~l~V 1107 (1169)
...+|||||-|.+|++||-+.+...|- +.+++ +..++..|++||||.|...+..++.+-++.. ..+|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK-FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK-FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh-hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 478999999999999999888876652 33332 3557888999999999999999999999884 67889987555
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00062 Score=66.43 Aligned_cols=107 Identities=25% Similarity=0.363 Sum_probs=74.0
Q ss_pred HHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhccCC---------HHHHHHHHHHH
Q 001060 334 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANY---------PEYWIRYVLCM 400 (1169)
Q Consensus 334 i~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~~~~~~---------~e~W~~~a~~l 400 (1169)
+..||..|.. +- .....++.|..|+.|.++. +.......+++||+..+..+ ..+|+.|+.+.
T Consensus 5 r~~~e~~i~~-~~----~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~ 79 (126)
T PF08311_consen 5 RQEFEEQIRS-YE----EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS 79 (126)
T ss_dssp HHHHHHHHHC-CG----GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB
T ss_pred HHHHHHHHHH-cc----CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc
Confidence 3446666652 10 1335688999999999765 45667889999999987543 35888888754
Q ss_pred HHcCChHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 401 EASGSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
. .+.++|....... -.+.+.+|..||.+++..|++++|.++|.++
T Consensus 80 ~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 S------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp S------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3 5666776554421 1467788888888888888888888888764
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00093 Score=75.43 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++..|.+.++|..|+..|+++++- +-+....++ ++. ...+... ..+.+.++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~-l~~~~~~~~-------------------ee~-~~~~~~k------~~~~lNlA 264 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSF-LEYRRSFDE-------------------EEQ-KKAEALK------LACHLNLA 264 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHH-hhccccCCH-------------------HHH-HHHHHHH------HHHhhHHH
Confidence 34566888999999999999999861 001111111 110 0011111 12345556
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH-
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL- 476 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~- 476 (1169)
.++.+.+.+.+|+....++|++. +++....+..++.+...|+++.|+..|+++ +++.|+|-.+-..++.+-.+...+
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka-~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKA-LKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655 666666666666666666666666666666 566666666655555554444333
Q ss_pred HHHHHHHHHHHHhhh
Q 001060 477 EDAFSLYEQAIAIEK 491 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~ 491 (1169)
++.+.+|.+++....
T Consensus 343 ~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 343 EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccc
Confidence 334666666666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0076 Score=60.75 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccCCHHHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCME 401 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~-~~~~~e~W~~~a~~l~ 401 (1169)
...-...+.++.+.++.+ ..+.+-..++.-..+.|++.+++..|++++.- ..+++.+.+.++....
T Consensus 69 ~ldP~R~~Rea~~~~~~A-------------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 69 KLDPERHLREATEELAIA-------------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hcChhHHHHHHHHHHhhc-------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 334444555555555543 22456667777778899999999999999865 6788899999999999
Q ss_pred HcCChHHHHHHHHHHHHHhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 402 ASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
..+++.+|...++...+.+ | ..+.-++.+++.+-.+|.+..|+..|+.+ +...|+ ....+.|+.++.++|+.+++
T Consensus 136 a~~~~A~a~~tLe~l~e~~-pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a-~~~ypg-~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYN-PAFRSPDGHLLFARTLAAQGKYADAESAFEVA-ISYYPG-PQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hhccHHHHHHHHHHHhhcC-CccCCCCchHHHHHHHHhcCCchhHHHHHHHH-HHhCCC-HHHHHHHHHHHHHhcchhHH
Confidence 9999999999999998876 4 46889999999999999999999999998 777886 66788899999999998888
Q ss_pred HHHHHHHHHh
Q 001060 480 FSLYEQAIAI 489 (1169)
Q Consensus 480 ~~iy~~Al~~ 489 (1169)
..-|....+.
T Consensus 213 ~aq~~~v~d~ 222 (251)
T COG4700 213 NAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHHH
Confidence 8777655543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.071 Score=62.03 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=99.0
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-hhc----
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC----ANYPEYWIRYVLCMEASGSMDLAHNALARATHV-FVK---- 422 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~----~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~-~~p---- 422 (1169)
.......|..++....+.|.++.|...+.++.... ...+.+-+.++.++...|+.++|...++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34456789999999999999999999999988654 226788999999999999999999988887771 111
Q ss_pred ----------------------------cChHHHHHHHHHHHHc------CCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 423 ----------------------------RLPEIHLFAARFKEQN------GDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 423 ----------------------------~~~~l~~~~a~~~e~~------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
....+++.+|.+.... +..+++...|.++ .++.|.....|..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEA-TKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHhChhHHHHHHHHHH
Confidence 1245777888888888 8899999999998 7899999999999998
Q ss_pred HHHHc
Q 001060 469 MERRL 473 (1169)
Q Consensus 469 ~e~r~ 473 (1169)
+..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 87655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00027 Score=83.06 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecC--CCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~--~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++..+.+||+||++.++++.|-..|..||+|..++|+.... ...+.+.||||-|-+..++++|++. +|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44568999999999999999999999999999988765322 2345678999999999999999987 79999999999
Q ss_pred EEeccC
Q 001060 1107 IEERRP 1112 (1169)
Q Consensus 1107 V~~~r~ 1112 (1169)
+-+.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988753
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00017 Score=56.24 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
+.|..++..+.+.|++++|+++|+++|+.+|++.++|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888888888888888888888888888888888877764
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.25 Score=67.12 Aligned_cols=209 Identities=14% Similarity=0.180 Sum_probs=130.6
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-------
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR------- 423 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~------- 423 (1169)
++..-.+.|..++.+.+..|.+++|....-.|.+.. -+++.+..|.++...|+...|+.+++..++.+.++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 345567899999999999999999998888887765 57899999999999999999999999999776554
Q ss_pred ---------ChHHHHHHHHHHHHcCCH--HHHHHHHHHHhhhcCCChHHHHHHHHHHH------------HHcCCHHH--
Q 001060 424 ---------LPEIHLFAARFKEQNGDI--DGARAAYQLVHTETSPGLLEAIIKHANME------------RRLGNLED-- 478 (1169)
Q Consensus 424 ---------~~~l~~~~a~~~e~~g~~--~~A~~~~~~a~~~~~P~~~~~~~~~a~~e------------~r~g~~e~-- 478 (1169)
...+.+.++.+.+..++. +...+.|..+ .++.|..-+-++.++.++ ++.|++..
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~-~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA-KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence 123455566777777764 3366778887 677774333222222222 23355555
Q ss_pred -HHHHHHHHHHhhhCCCccCchHHHHHHHHHH---HHH---------HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 479 -AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF---LHL---------VSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 479 -A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~---~~~---------~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
+.-.|.+++....... -..+|.+..-|.++ .+. ..++.+.--++.+.++++.|.- .++-.|..+.
T Consensus 1822 ~~~~~~~~sl~yg~~~i-yqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y-~f~ta~sQLl 1899 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGNQHL-YQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY-QFYTAYSQLL 1899 (2382)
T ss_pred HHHHHHHHHHHhcchhH-HHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHHH
Confidence 4444457776553221 11244443333332 111 1223455566677778787753 3444777777
Q ss_pred hhCC-ChhH-HHHHHHHHHHH
Q 001060 546 SIQS-SPKQ-IDFLEQLVDKF 564 (1169)
Q Consensus 546 ~~~~-~~~~-~~~~r~l~era 564 (1169)
.+.- ..++ +..+.++..+.
T Consensus 1900 SRicH~~~dV~~vl~~II~~l 1920 (2382)
T KOG0890|consen 1900 SRICHPNQDVARVLKHIIAKL 1920 (2382)
T ss_pred HHHcCCchHHHHHHHHHHHHH
Confidence 6642 2222 34445554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=63.14 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIK 465 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~ 465 (1169)
++++..+..+...|+.++|+.+|++++..-+. ....+++.++..+...|++++|..+++++ ....|+ +..+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~-~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA-LEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHH
Confidence 57889999999999999999999999985432 24679999999999999999999999998 566788 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
++......|+.++|...+-.++..
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998877764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0005 Score=60.02 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=40.6
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
+.+.+++++++..+++++...|.++.+|+.+|.++...|++++|+..|+++++.. |+.+.+....
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~~ 69 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-PDDPDARALR 69 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666655 5555444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.24 Score=59.24 Aligned_cols=32 Identities=19% Similarity=0.019 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001060 580 REELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611 (1169)
Q Consensus 580 ~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~ 611 (1169)
..++-.+|.-|+++-|.++.+.+-|-.+.++.
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 34577888889999999888888877777764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.012 Score=62.78 Aligned_cols=110 Identities=17% Similarity=0.103 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 502 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l 502 (1169)
..++..|....+.|++.+|+..|+++ +...|. ...+++.++..+.+.|+++.|+..|++.+...|.. +..+.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l-~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---~~~~~A 81 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKL-IDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---PKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH-HHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhhH
Confidence 34444444445556666666666654 333443 23445555666666666666666666666666543 222333
Q ss_pred HHHHHHHHHH----------HhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 503 YAQYSRFLHL----------VSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 503 ~~~~a~~~~~----------~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
+...+...+. -.+...+|+..|+..+...|++...-.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 3222222211 123467899999999999999974443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.72 Score=57.31 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
+++.+|.+-.+++++.+|+..-+-..-+-...+.|..++|..+++-.-.. +.+.++-+..+.+.....++.++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 47889999999999999998887777788889999999999666544443 44456666666666657899999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001060 195 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 233 (1169)
Q Consensus 195 rAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~ 233 (1169)
|++...|..-....++..|++-..-..+-+.+.++|+..
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999866653233455556665333233445577777733
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.35 Score=59.92 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhccCCH-H
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK----VVKLYERCLIACANYP-E 391 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~----a~~lyeraL~~~~~~~-e 391 (1169)
+.....+|...++++++...|++++. .+|. .++...|...+.+.+++.+ ++++|+ ..|..+ -
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~--------~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~yy 146 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQ--------KYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRAYY 146 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh--------hCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccch
Confidence 34445567777777777777777766 3444 4444444444444444442 455554 334433 3
Q ss_pred HHHHHHHHHHHc
Q 001060 392 YWIRYVLCMEAS 403 (1169)
Q Consensus 392 ~W~~~a~~l~~~ 403 (1169)
+|--...++...
T Consensus 147 fWsV~Slilqs~ 158 (932)
T KOG2053|consen 147 FWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHhc
Confidence 566555555443
|
|
| >PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00051 Score=67.53 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=72.6
Q ss_pred cchhHhHHHHHHHHhhh-----hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC-CcceeEeeeeccccCC
Q 001060 720 PAQVGSYFVGQYYQVLQ-----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN-FTAIEIKTINSLGSWN 793 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~-~~~~~i~~~d~q~~~~ 793 (1169)
++++...||+.||..|+ +....|..||..++.++ |+|+.+.+.. ...+++.+.+ .+.++++++||+...+
T Consensus 3 ~tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II-~Ng~Pi~~~~---~F~~~w~~~pv~TqH~L~s~D~H~IPG 78 (166)
T PF10429_consen 3 QTQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKII-WNGTPIAQPT---AFQQTWQQQPVQTQHQLTSFDCHVIPG 78 (166)
T ss_dssp CCCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEE-ETTEEES-HH---HHHHHHHCCS--EEEEEEEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEE-ECCccCCCHH---HHHHHHHhCccceeeeeeeeeeeEeCC
Confidence 56788899999999999 33455888998876555 8999876663 4577889999 6778999999999775
Q ss_pred -CceEEEEEEEEEecCccccceeEEEEEEEee
Q 001060 794 -GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824 (1169)
Q Consensus 794 -~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~ 824 (1169)
|.++|.|+|.+..++. -+-|--|+..|...
T Consensus 79 sgt~i~N~n~KVRFDEs-Grdk~G~~a~l~~~ 109 (166)
T PF10429_consen 79 SGTFIINVNCKVRFDES-GRDKLGEDADLPQP 109 (166)
T ss_dssp TTEEEEEEEEEEEEB-S-SB-TTS-B--TTS-
T ss_pred CCeEEEeeeEEEEecCC-CCCCCCCceeeccc
Confidence 4577789999999876 35667788877653
|
Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.16 Score=57.06 Aligned_cols=248 Identities=17% Similarity=0.079 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
-.++++.+++.||-++. +|. .+.+--.||.- ++.|+.+-++.+-+++-...|.-+=.|.....-....
T Consensus 132 ~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleA-qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEA-QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred hcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHH-HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 34688888999998875 322 12222223333 5779999999999999988888888888877777788
Q ss_pred CChHHHHHHHHHHHHHhh--cc---ChHHHHHHHHH-HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 404 GSMDLAHNALARATHVFV--KR---LPEIHLFAARF-KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~--p~---~~~l~~~~a~~-~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
|+++.|+++++....... ++ ....-++-+.. ..-.-+...|+..-..+ .++.|+....-..-+..+.+.|+..
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a-~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA-NKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhcCCccchHHHHHHHHHHhccchh
Confidence 999999988876554321 21 11222222222 22234566677776676 7889998888888888888999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI-LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i-~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~ 556 (1169)
++-.|++.+.+.+| +|.+|..|.+. + .|+.-..|-- .++.-.+.|++..-....+.-.+.-++ ...
T Consensus 281 Kg~~ilE~aWK~eP-------HP~ia~lY~~a--r-~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e---~~~ 347 (531)
T COG3898 281 KGSKILETAWKAEP-------HPDIALLYVRA--R-SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE---FSA 347 (531)
T ss_pred hhhhHHHHHHhcCC-------ChHHHHHHHHh--c-CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc---hHH
Confidence 99999999998875 26777777544 3 5654333321 222233567776655444444433333 334
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Q 001060 557 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF-GDAQLIKKAEDRH 607 (1169)
Q Consensus 557 ~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~-Gd~~~i~~v~~R~ 607 (1169)
+|.--|.+....| ++.++-...+.|+-. ||...++....+.
T Consensus 348 ARa~Aeaa~r~~p----------res~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 348 ARAKAEAAAREAP----------RESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhhhCc----------hhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4554454444332 334666666666655 7776665555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.11 Score=55.80 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a 507 (1169)
+...+.++...|++++|.++..+. .++++.-.-+.+..++.+++-|+..++++.+...+ .++-.|-..|.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----~tLtQLA~awv 180 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED----ATLTQLAQAWV 180 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----HHHHHHHHHHH
Confidence 333445555555666665554442 23444444444455555555555555555554421 11112222232
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 001060 508 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF 587 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~ 587 (1169)
.+.-- .+++..|.-||+..-+..+....+....+-.-+.+++ ++.+..+++.+|.....++ +.+...
T Consensus 181 ~la~g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~dp---------etL~Nl 247 (299)
T KOG3081|consen 181 KLATG-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAKDP---------ETLANL 247 (299)
T ss_pred HHhcc-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCCCH---------HHHHHH
Confidence 22111 2245556666666555555555555555555555444 4445555555555544443 234444
Q ss_pred HHHHHhhC-CHHHHHHHHHHHHhhhC
Q 001060 588 LEFLGLFG-DAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 588 l~fe~~~G-d~~~i~~v~~R~~~~~~ 612 (1169)
+-.-...| |.+...+........-+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 44444445 44444444433333333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.032 Score=64.02 Aligned_cols=178 Identities=17% Similarity=0.100 Sum_probs=118.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhhccChHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIRYVLCMEA---SGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~----~~~~~e~W~~~a~~l~~---~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
+.+.-+.++--+..-.|++..+.+.+..-.. .+..+.+-+.||..|.+ .|+.++|+.++..++......++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456677776778888999999999886655 45677899999999998 8999999999999776665778999
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH-H---HHHHHHHHHHHhhhCCC
Q 001060 428 HLFAARFKEQ---------NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL-E---DAFSLYEQAIAIEKGKE 494 (1169)
Q Consensus 428 ~~~~a~~~e~---------~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~-e---~A~~iy~~Al~~~~~~~ 494 (1169)
+..+|+++.. ...+++|...|.+++ ++.|+.. .=++++.++...|.. + +.+.+--+.-.....+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF-e~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF-EIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH-cCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999987643 224788999999984 5566533 234555555555542 2 22332211111110111
Q ss_pred ccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 495 HSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 495 ~~~~~~~l~--~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
........| ..++..... .|++++|...+++++++.|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCcch
Confidence 111122344 344444443 8899999999999999876554
|
|
| >KOG1855 consensus Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00066 Score=75.72 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEee----cCCCcc--------cccEEEEEECCHHHHHHHHHhC
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR----NRKDVV--------GVCYAFVEFEDISGVQNAIQAS 1096 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~----~~~~g~--------~~g~afV~F~~~~~a~~Ai~~~ 1096 (1169)
-++++|.+-|||.+-.-+-|.++|+.||.|+.|+|.-. ....|. .+-||||+|+..+.|.+|.+.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 47899999999999888999999999999999876322 111222 2468999999999999999874
|
|
| >KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0003 Score=81.33 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=60.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
..++|+|-|||..|+.++|+.+|+.||+|+.|+. +-..+|..||+|-|..+|++|+++ ++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4589999999999999999999999999998542 223568999999999999999988 89999999888
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0046 Score=71.60 Aligned_cols=69 Identities=12% Similarity=-0.044 Sum_probs=65.3
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGY---WKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~---W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
.+|.+.++|..|+..+..+ +++++|..+|+++|+++|++..+ |++++-.+..+|++++|+..|+++|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5899999999999999985 59999999999999999999865 999999999999999999999999997
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00012 Score=84.13 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.5
Q ss_pred CCCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1028 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1028 ~~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
..|.+.+++|+--+.-.++..+|.++|+.+|+|.+|.| |.++.+++++|.|||+|.|.+++..||.++|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVri-I~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRI-IGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEe-eccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 45667899999999999999999999999999999975 77888999999999999999999999999999999999999
Q ss_pred Ee
Q 001060 1108 EE 1109 (1169)
Q Consensus 1108 ~~ 1109 (1169)
..
T Consensus 253 q~ 254 (549)
T KOG0147|consen 253 QL 254 (549)
T ss_pred cc
Confidence 64
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=64.66 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 441 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e-----~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~ 441 (1169)
-.+|+++.|..-|.++|..||..+. ++..-+.++.+++.++.|++-..+||++. |.+-.+....|.++++...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 4678899999999999999987654 55555666667777777777777777776 66666666667777777777
Q ss_pred HHHHHHHHHHhhhcCCChHHHHH
Q 001060 442 DGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 442 ~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
++|+.-|+++ ++++|...++.-
T Consensus 185 eealeDyKki-~E~dPs~~ear~ 206 (271)
T KOG4234|consen 185 EEALEDYKKI-LESDPSRREARE 206 (271)
T ss_pred HHHHHHHHHH-HHhCcchHHHHH
Confidence 7777777776 667776544433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.027 Score=58.28 Aligned_cols=218 Identities=13% Similarity=0.118 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE 391 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e 391 (1169)
+..+++--|+.+|...+-..-|+..|..+|. +.|...+++..++-++...|+++-+...|...++.+|.+.-
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLa--------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALA--------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhh--------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 3344566677788888888888888888887 77777777777777778889999999999999999998877
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH-HHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII-KHANME 470 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~-~~a~~e 470 (1169)
.....+..+.--|++.-|.+-+..--+.. |++| ....|..+-++.-+..+|+.-+.+-....+. +.|= ..+.++
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~---e~WG~~iV~~y 209 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK---EQWGWNIVEFY 209 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcC-CCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHHhccH---hhhhHHHHHHH
Confidence 76666654544678888877666655544 5544 2223333445666777777654432133222 2221 122233
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
+|++. ...+++++.+...++.. ...+.+.|..+++.... .|++++|..+|+-|+...--+- +=..|+.||+.
T Consensus 210 --LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~-~G~~~~A~~LfKLaiannVynf-VE~RyA~~EL~ 282 (297)
T COG4785 210 --LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS-LGDLDEATALFKLAVANNVYNF-VEHRYALLELS 282 (297)
T ss_pred --Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 34432 34566666654432111 11223456666766554 9999999999999986542111 11156666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.03 Score=59.05 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhc-----
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY------LDFIERDGDFNKVVKLYERCLIAC----- 386 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y------l~~~~~~gd~~~a~~lyeraL~~~----- 386 (1169)
......|+..++++++...+.++++ -..++...|+.- +.+..+...+.++..+|+++....
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~--------~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASK--------GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 3345578899999999999999886 223333344432 223345567788999999987653
Q ss_pred cCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHH-----hhh
Q 001060 387 ANYP-EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLV-----HTE 454 (1169)
Q Consensus 387 ~~~~-e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a-----~~~ 454 (1169)
|... ...-+.+..+ ..-+.++|+.+|+|++.++. ... +++-..++++.+...+++|-..+.+- ..+
T Consensus 107 pdtAAmaleKAak~l-env~Pd~AlqlYqralavve-~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 107 PDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVE-EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred cchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 2222 2444555544 45678999999999999873 332 34444677888888888887766653 123
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 455 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
..+.....++..+.++.-..++..|..+|+...++..-. . ........++..+ |. .|+.+++.+++...+-.+
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~-~-sed~r~lenLL~a-yd-~gD~E~~~kvl~sp~~r~--- 257 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL-K-SEDSRSLENLLTA-YD-EGDIEEIKKVLSSPTVRN--- 257 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc-C-hHHHHHHHHHHHH-hc-cCCHHHHHHHHcChHhhh---
Confidence 456666777777777777789999999999987764311 1 1112344555555 34 899999998876444222
Q ss_pred HHHHHHHHHhHhhC
Q 001060 535 KPLLEALIHFESIQ 548 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~ 548 (1169)
+=..|+.+-..+
T Consensus 258 --MDneya~l~kdl 269 (308)
T KOG1585|consen 258 --MDNEYAHLNKDL 269 (308)
T ss_pred --hhHHHHHHhhcc
Confidence 222555555444
|
|
| >cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0034 Score=60.17 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=82.3
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCC-cccchhhHHHHHHHHhcCCC---ccee-EeeeeccccCC-CceE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGD-STESASSMLDIHSLVISLNF---TAIE-IKTINSLGSWN-GGVL 797 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~-~~~~~~~~~~I~~~~~~l~~---~~~~-i~~~d~q~~~~-~~il 797 (1169)
..|+.+||..|+ .+++.|..||.+++.+....+. ......+.++|.+++..+.. ...+ +.+++++...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 8899999999998766543321 01233455567778877752 2333 57888877543 3466
Q ss_pred EEEEEEEEecC--ccccceeEEEEEEEeeCCeEEEEcceEEe
Q 001060 798 VMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837 (1169)
Q Consensus 798 v~v~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 837 (1169)
+.+.+.+...+ ....+.|.++|.+...+++|.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 67778887765 23567899999999999999999999976
|
This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.78 Score=55.09 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
.+++++|...+ .-++.-|+.+..|+.++.+-+..|+.--|..+|
T Consensus 457 ~~df~ra~afl-es~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 457 DGDFDRATAFL-ESLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cCchHHHHHHH-HhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 46888886544 456788999999999999999999987666555
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0032 Score=60.74 Aligned_cols=91 Identities=22% Similarity=0.381 Sum_probs=64.0
Q ss_pred hhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 001060 353 VTELENWHNYLDFIERD----GDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALARATH- 418 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~~~~---------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~- 418 (1169)
..-++.|..||.|.+.. +.-.....+++||+..+. .+..+|+.|+.+. ++ .+++|.-...
T Consensus 19 dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~ 92 (125)
T smart00777 19 DDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK 92 (125)
T ss_pred CCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC
Confidence 34478899999998753 344568899999998853 3346899999853 23 3444543332
Q ss_pred -HhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 419 -VFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 419 -~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
+- .....+|..||.+++..|++.+|.++|+.
T Consensus 93 ~IG-~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 93 GIG-TKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred Ccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 12 35677888888888888888888888764
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.023 Score=65.96 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=115.8
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc---------c---------------
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---------R--------------- 423 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p---------~--------------- 423 (1169)
+..+..+-+++-.+||..+|++.+.|+-++. +......++..+|++|++.-.. .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 4567888889999999999999999988885 3344577888888888764310 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
...+...+|.+..+.|+.++|.+.|..+ ++.+|. +..+...++..+..++.+.++..++.+.-++. -+....
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdL-lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-----lpkSAt 331 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDL-LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-----LPKSAT 331 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHH-HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-----CCchHH
Confidence 1223344788899999999999999998 444454 56788899999999999999999988853321 111222
Q ss_pred HHHHHHHHHHHHhCC---------------HHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 502 LYAQYSRFLHLVSRN---------------AEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~---------------~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
+...-+-+..+..++ ...|.+.+.+|++.+|+-+.++...
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 222222222232332 1356788999999999988777543
|
The molecular function of this protein is uncertain. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0042 Score=62.90 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---- 150 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--------~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---- 150 (1169)
.+.+.++..+..||.|.++++.++..+..+. ..-|++|+.-|+.+|.++|+..+....++..+..++.
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d 88 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD 88 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence 4566777778888888888887666655442 1345667777777777888777777777666655431
Q ss_pred -------HHHHHHHHHHHHhccCCC
Q 001060 151 -------MDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 151 -------~e~A~~l~eraL~~~P~s 168 (1169)
|++|.+.|++++...|.|
T Consensus 89 ~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 89 TAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555555555554433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=51.65 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
+.|..++..+...|++++|+.+|+++|..+|.++++|+.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 346666666666666666666666666666666666666553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.15 Score=54.69 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=128.5
Q ss_pred hhcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhccCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFN-KVVKLYERCLIACANYPEYWIRYV-LCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~-~a~~lyeraL~~~~~~~e~W~~~a-~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
...+...+.+..+++..++.+ ..-.++|..+........+|.-++ .++...+++++|.+.+.+.. ..++...
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al 142 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAAL 142 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHH
Confidence 344566777777766555544 455667777666666666776655 55667889999998876632 3345566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGL-----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-----~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~ 505 (1169)
-..++.+..+++-|++.+++. .+++-+. ...|++++ -..+.+.+|.=+|+...+..+. .|.+...
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~m-q~ided~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~------T~~llnG 212 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKM-QQIDEDATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPP------TPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCC------ChHHHcc
Confidence 667777788888999998886 5544432 22344333 3345688999999988875431 2566666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChh
Q 001060 506 YSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 552 (1169)
Q Consensus 506 ~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~ 552 (1169)
.+-+... .|++++|..+++.||...++++..+.+++-.-.-+|.+.
T Consensus 213 ~Av~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 213 QAVCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 6666555 999999999999999999999999988888887777543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.05 E-value=1 Score=61.50 Aligned_cols=216 Identities=16% Similarity=0.159 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFV------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
.+.|......-....+..+-+-.++|++-... ....++|+..|++....|.++.|...+-+| .+.. ..+++
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A-~e~r--~~~i~ 1705 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA-KESR--LPEIV 1705 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh-hhcc--cchHH
Confidence 35676555433223333333344555443221 234678888888888888888888877776 3322 46678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC-----c------hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhh
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ-----T------LPMLYAQYSRFLHLVSRN--AEKARQILVDSLDH 530 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~-----~------~~~l~~~~a~~~~~~~g~--~e~Ar~i~~kAl~~ 530 (1169)
+..|.+++..|+-..|..+++..++..-.+.+.+ . .......+++|... .++ .+.-.+.|..+.+.
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHH
Confidence 8888888888888888888888886543322111 1 11123344455444 443 46678999999999
Q ss_pred cCC--CHHHHHH--HHHhHhhCCChh-----HH-HHHH--HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-----H-H
Q 001060 531 VQL--SKPLLEA--LIHFESIQSSPK-----QI-DFLE--QLVDKFLMSNSDSPSTANAAEREELSCVFLEF-----L-G 592 (1169)
Q Consensus 531 ~p~--s~~l~~~--~a~~E~~~~~~~-----~~-~~~r--~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f-----e-~ 592 (1169)
.|. +..+++. |..++....... ++ .++- .-|.+++..+...-. +..-.+...|+++ . +
T Consensus 1785 l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iy----qsmPRllTLWLD~~t~~~~~e 1860 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLY----QSMPRLLTLWLDIGTHISSVE 1860 (2382)
T ss_pred cccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHH----HhhhHHHHHHHhhcchhcccc
Confidence 884 3334433 333333221111 12 2222 224688877644321 2234577788885 2 2
Q ss_pred hhC-------CHHHHHHHHHHHHhhhCC
Q 001060 593 LFG-------DAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 593 ~~G-------d~~~i~~v~~R~~~~~~~ 613 (1169)
+.| +++.+.++-.++.+.+|.
T Consensus 1861 k~~r~ei~s~~~~~in~~i~~~~~~lp~ 1888 (2382)
T KOG0890|consen 1861 KAPRGEIVSKNLKLINSLIEEALEHLPT 1888 (2382)
T ss_pred cCChhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 222 344555556666666654
|
|
| >PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0013 Score=61.80 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=42.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---C---CCeeeceEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---S---PIQLAGRQVY 1106 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~---~~~i~g~~l~ 1106 (1169)
|..|+|.|++..++.++|+++|++||.|..|++.. +-.-|||-|.+.++|+.|++. . +..|.+..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 35789999999999999999999999999876421 223799999999999999975 3 5677777766
Q ss_pred EE
Q 001060 1107 IE 1108 (1169)
Q Consensus 1107 V~ 1108 (1169)
++
T Consensus 74 ~~ 75 (105)
T PF08777_consen 74 LE 75 (105)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0061 Score=62.06 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
+.-+...|++++|..-|.+||.++++-. .-+|...|....+++..+.|+.-+.++ ++++|.+..++.+++.++.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa-iel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA-IELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh-HhcCchhHHHHHHHHHHHHh
Confidence 3335578999999999999999985432 345666788888999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhC
Q 001060 473 LGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+..+++|+.-|++.++..|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0042 Score=71.90 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=65.6
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~---W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
.+|.....|.+++..+...|++++|+..|+++|..+|++.+. |+.++.+|..+|++++|+..|++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999965 9999999999999999999999999863
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0074 Score=63.28 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
+.+..|+.+|-++|.+.|+...||.+-|..+++.++++.+..-+.|+|+++|+.+...+.+..+.+ ....+++++..+.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQ 102 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999888 6778999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHH
Q 001060 195 RGLAYVGTDY--LSFPLWDKYIE 215 (1169)
Q Consensus 195 rAl~~~g~d~--~s~~lw~~y~~ 215 (1169)
||......+. ....||..+..
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~ 125 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRD 125 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHH
Confidence 9976543222 24577777666
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0007 Score=79.26 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
...+|||+|||...++.+++++...||+++... ++.+..+|.++||||.+|.+......|+.. ||..++++.|.|..+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~-lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR-LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhhe-eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 457899999999999999999999999999876 467888899999999999999999999987 899999999999766
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 43
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.17 Score=53.55 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-------~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.++..-.-.++..++++++...++++....-++.. |+..+..++. ...+.++..+|+||+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs-lfhAAKayEqaamLake~~klsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS-LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence 33444444445567777777777777765544433 3333333332 2233444444444443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
++.++|..+-|-..++++. .+. ..-+.++|+.+|.+++......+....-.+++-..++.
T Consensus 100 ----lY~E~GspdtAAmaleKAa---------------k~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 100 ----LYVECGSPDTAAMALEKAA---------------KAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred ----HHHHhCCcchHHHHHHHHH---------------HHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3446777777777777762 121 23477899999999998775433322234567777788
Q ss_pred HHHHhCCHHHHHHHHHHHhhh------cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 001060 510 LHLVSRNAEKARQILVDSLDH------VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREEL 583 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~------~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i 583 (1169)
+.+ ...+.+|-..+.+-... .+.-...+...+.+.+-.++ ...+..||....... ..+.+++ ...
T Consensus 160 lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D---yv~aekc~r~~~qip----~f~~sed-~r~ 230 (308)
T KOG1585|consen 160 LVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD---YVQAEKCYRDCSQIP----AFLKSED-SRS 230 (308)
T ss_pred hhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH---HHHHHHHhcchhcCc----cccChHH-HHH
Confidence 776 66677776655543321 23223444444444443333 334566665543321 1122232 246
Q ss_pred HHHHHHHHHhhCCHHHHHHHH
Q 001060 584 SCVFLEFLGLFGDAQLIKKAE 604 (1169)
Q Consensus 584 ~~~~l~fe~~~Gd~~~i~~v~ 604 (1169)
+++.|.+.. -||.+.+.+|.
T Consensus 231 lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhc-cCCHHHHHHHH
Confidence 667777663 48898888876
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0015 Score=68.41 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=59.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
..+.++|.|++..+.+.+|+++|.++|.+....+ .++++||+|++.+++..|+.. ++..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3488999999999999999999999999954221 347999999999999999988 799999999999
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0038 Score=68.14 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=82.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
-+.-+.++|++++|+++|.+++... |.++-++...|..+.+...+.-|..-+..+ +.++-.+..+|.+++..-..+|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhh
Confidence 3445667899999999999999877 788888988888888888888888888887 77788888899999999889999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001060 476 LEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~ 492 (1169)
+.+|..-|+.+|.+.|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 99999999999999874
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.13 Score=57.10 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPE 426 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~-----e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~ 426 (1169)
+.+.++..-.++..++.+++.+-.-++..-...+ ....-++..+...+.++.+++.|+.|+.+.... .-.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444444444555566677766666665543333 233445555556677889999999998765221 124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC----Ch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSP----GL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P----~~------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~ 496 (1169)
++..++.+.-+..|+++|.-...++ .++.- ++ ..+.+.++..++.+|.+-.|.++.++|.++.-...+.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA-~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKA-AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhH-HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 6777889999999999988776665 22211 11 2245667777888899999999999988765322222
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001060 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576 (1169)
Q Consensus 497 ~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~ 576 (1169)
.....-..-+++++.. .|+.+.|..-|+.|.... ..+-+.+..++...+- -++++..-..+.-..
T Consensus 243 a~~arc~~~~aDIyR~-~gd~e~af~rYe~Am~~m---~~~gdrmgqv~al~g~-------Akc~~~~r~~~k~~~---- 307 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRS-RGDLERAFRRYEQAMGTM---ASLGDRMGQVEALDGA-------AKCLETLRLQNKICN---- 307 (518)
T ss_pred HHHHHHHHHHHHHHHh-cccHhHHHHHHHHHHHHH---hhhhhhHHHHHHHHHH-------HHHHHHHHHhhcccc----
Confidence 2222334567888554 999999999999887543 3344455555544332 222222111111000
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001060 577 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 577 ~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~ 612 (1169)
=...++-.+.++.....|..-.+.|+.=|...++.
T Consensus 308 -Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 308 -CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred -cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 12457889999999999999999999999988874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.016 Score=62.72 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 438 NGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
.|++..|...|..- ++..|+.. .+++=++.....+|++++|..+|..++...|. ++..|+.++.++..+.+ +
T Consensus 154 sgdy~~A~~~F~~f-i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~---s~KApdallKlg~~~~~-l 228 (262)
T COG1729 154 SGDYAEAEQAFQAF-IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK---SPKAPDALLKLGVSLGR-L 228 (262)
T ss_pred cCCHHHHHHHHHHH-HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHHH-h
Confidence 34444444444442 33344321 22333344444455555555555555544433 23334445555555444 5
Q ss_pred CCHHHHHHHHHHHhhhcCCCH
Q 001060 515 RNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
|+.++|+.+|+..++.+|++.
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCH
Confidence 555555555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.014 Score=63.27 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=65.0
Q ss_pred HHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHc
Q 001060 400 MEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRL 473 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~ 473 (1169)
+.+.|++..|...|..-++.+ |+ .++.++-++..+..+|++++|..+|..+ .+-.|+ -++..++++.+..++
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~-~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV-VKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHH-HHhCCCCCCChHHHHHHHHHHHHh
Confidence 445677777777777777777 43 3566777777777777777777777776 344444 456677888888888
Q ss_pred CCHHHHHHHHHHHHHhhhC
Q 001060 474 GNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~ 492 (1169)
|+.++|+..|+++++..|+
T Consensus 229 ~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 229 GNTDEACATLQQVIKRYPG 247 (262)
T ss_pred cCHHHHHHHHHHHHHHCCC
Confidence 8888888888888877764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=1 Score=54.16 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=37.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 125 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 125 e~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
..+++.+|. +++|..+|+.-+..-.++.|+..|-||-.. .-+.+-..+..+.
T Consensus 683 ~qfiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY--~Gik~vkrl~~i~ 734 (1189)
T KOG2041|consen 683 IQFIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY--AGIKLVKRLRTIH 734 (1189)
T ss_pred HHHHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc--cchhHHHHhhhhh
Confidence 456777885 699999999988888899999999888542 2444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.27 Score=51.18 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 449 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~ 449 (1169)
.+-+||.-+|||.. ++...|-..-|+.-|..++.+. |+.+.++..++.++...|+++.|.++|+
T Consensus 60 ~~eeRA~l~fERGv---------------lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFd 123 (297)
T COG4785 60 TDEERAQLLFERGV---------------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 123 (297)
T ss_pred ChHHHHHHHHHhcc---------------hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhh
Confidence 34556776777654 4455566667788888888888 8999999999999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHh
Q 001060 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL-VDSL 528 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~-~kAl 528 (1169)
.. .+++|.+--+.++++....=-|++.-|..-+.+..+.+|.+ | .-.+|..+... .-+..+|+.-+ +++-
T Consensus 124 s~-~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D---P-fR~LWLYl~E~----k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 124 SV-LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND---P-FRSLWLYLNEQ----KLDPKQAKTNLKQRAE 194 (297)
T ss_pred hH-hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC---h-HHHHHHHHHHh----hCCHHHHHHHHHHHHH
Confidence 97 89999988888887776666789988888887777776532 1 22466554322 34577776544 4444
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH---hhCCHHHHHHHHH
Q 001060 529 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLG---LFGDAQLIKKAED 605 (1169)
Q Consensus 529 ~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~---~~Gd~~~i~~v~~ 605 (1169)
.+ +...| .|...+.-+|.-. ...+++++..-..++. .-.+.+.+.|...-+ ..|+++.+..+.+
T Consensus 195 ~~---d~e~W-G~~iV~~yLgkiS----~e~l~~~~~a~a~~n~-----~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 195 KS---DKEQW-GWNIVEFYLGKIS----EETLMERLKADATDNT-----SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred hc---cHhhh-hHHHHHHHHhhcc----HHHHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33 34555 3333443333211 2456777655433322 223345555554443 4588888888877
Q ss_pred HHHhh
Q 001060 606 RHARL 610 (1169)
Q Consensus 606 R~~~~ 610 (1169)
-....
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 66543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.042 Score=54.11 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
-++.-|.-..+.|++++|++.|+.+ ....|. ...+.+.++..+.+.+++++|+..|++.|.++|.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L-~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEAL-DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3333444444555555555555554 333433 2234444455555566666666666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0041 Score=55.08 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
|+...++..++.++.++|++++|+.+|++++.+...-. ..+.....+.+++.+... .|++++|++.|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 34566788899999999999999999999998742111 112234457788888776 999999999999999764
|
... |
| >PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0083 Score=55.08 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=58.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHhc--CCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee----ceEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQN--FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA----GRQVY 1106 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~--~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~----g~~l~ 1106 (1169)
++|-|+|||...|.++|.+++.. .|..-.+= +..|-.++-+.|||||.|.+++.+.+-.+. +|.... .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~Y-LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFY-LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEE-eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999999999999998864 34443332 233556777899999999999999988876 776664 35567
Q ss_pred EEeccC
Q 001060 1107 IEERRP 1112 (1169)
Q Consensus 1107 V~~~r~ 1112 (1169)
|..++-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 777654
|
It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO). |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.019 Score=54.62 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~ 476 (1169)
...|+++.|++.|.+++.+. |..+.+|...++.+.-+|+.++|+.-++++ +++.-+ -...+...+.+++.+|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~A-leLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKA-LELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 33455555555555555544 455555555555555555555555555554 333221 123344455555555555
Q ss_pred HHHHHHHHHHHHh
Q 001060 477 EDAFSLYEQAIAI 489 (1169)
Q Consensus 477 e~A~~iy~~Al~~ 489 (1169)
+.|+.-|+.|-++
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 5555555554444
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0028 Score=45.48 Aligned_cols=32 Identities=34% Similarity=0.794 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001060 149 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 180 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~ 180 (1169)
|++++|+.+|+++|..+|.+.++|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35666777777777777777777777777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.19 Score=53.73 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hhcC--CChHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH---TETS--PGLLEAIIKH 466 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~---~~~~--P~~~~~~~~~ 466 (1169)
+-+.|+.++.-.+.+.-....+.+.++.+++..+.+.-.++++..+.||++.|...|++.- ..++ -....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445556666666777778888888888878889999999999999999999999998541 1111 2244567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.++...+++..|...|.+++..++.+ +..-.+.|-++.. .|+...|.+.++.+++..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCccc
Confidence 888888899999999999999887532 3344455555555 8899999999999999998753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=53.90 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=79.3
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~ 442 (1169)
.-+.|+.+.++..|.++|..||..+.++..-++.+..+|+.++|++-+++|+++.-+.- -..|...+.++...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 35679999999999999999999999999999999999999999999999999774432 246777889999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 001060 443 GARAAYQLVHTETSP 457 (1169)
Q Consensus 443 ~A~~~~~~a~~~~~P 457 (1169)
.||.-|+.+ .++..
T Consensus 133 ~AR~DFe~A-A~LGS 146 (175)
T KOG4555|consen 133 AARADFEAA-AQLGS 146 (175)
T ss_pred HHHHhHHHH-HHhCC
Confidence 999999998 45444
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.019 Score=55.39 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=74.8
Q ss_pred HHHHHHHHH-H--hCCCCHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHhhc
Q 001060 120 IRRVYDAFL-A--EFPLCYGYWKKYADHEARV---G-SMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAINTY 183 (1169)
Q Consensus 120 Ar~~ye~~l-~--~~P~~~~~W~~~a~~e~~~---~-~~e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~~~ 183 (1169)
.|+.|++-| . ...+--..|..|+.+.... | .-..-..+++||++.+-++ +.+|+.|+++.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---- 79 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---- 79 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----
Confidence 456677666 2 2233358999999987753 2 3446778889998876322 68898888763
Q ss_pred CCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001060 184 GDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 232 (1169)
Q Consensus 184 ~~~e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r 232 (1169)
++ .+.+|..+... +|. ....+|..|+.+++..|++.+|..||++
T Consensus 80 ~d---p~~if~~L~~~~IG~--~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DE---PRELFQFLYSKGIGT--KLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CC---HHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33 46678877652 343 3678999999999999999999999975
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.053 Score=59.79 Aligned_cols=83 Identities=25% Similarity=0.276 Sum_probs=62.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC---------------------------------------
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------------------------------------- 1072 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~--------------------------------------- 1072 (1169)
.+-.|.|++|-..+++.+|-+.++.||+|..+...-.++.-
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i 109 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCI 109 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhh
Confidence 45678999999999999999999999999876432211110
Q ss_pred ----------------------------------------------cccccEEEEEECCHHHHHHHHHh-CCCeee--ce
Q 001060 1073 ----------------------------------------------VVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GR 1103 (1169)
Q Consensus 1073 ----------------------------------------------g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~--g~ 1103 (1169)
.+.---|.|||++.+.|++|..+ ||..|- -.
T Consensus 110 ~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 110 ERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred ccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccce
Confidence 12233689999999999999987 776663 35
Q ss_pred EEEEEeccCCC
Q 001060 1104 QVYIEERRPNT 1114 (1169)
Q Consensus 1104 ~l~V~~~r~~~ 1114 (1169)
.|+||++++.+
T Consensus 190 TLKIeyAkP~r 200 (494)
T KOG1456|consen 190 TLKIEYAKPTR 200 (494)
T ss_pred eEEEEecCcce
Confidence 79999998654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.41 Score=50.47 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcCCC------hH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQN-GDIDGARAAYQLVHTETSPG------LL 460 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~-g~~~~A~~~~~~a~~~~~P~------~~ 460 (1169)
+...+.++ +..+.++|.++++++++|+.. .-...|+..|.+++.- .+++.|+..|+++ -+...+ --
T Consensus 77 YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~A-ae~yk~ees~ssAN 154 (288)
T KOG1586|consen 77 YVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQA-AEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH-HHHHcchhhhhhHH
Confidence 33334444 345788888888888888732 1223455677777754 8899999999987 232222 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML-Y-----AQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l-~-----~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
..+++.+.+-..++++.+|+.+|++.....-++ +.+ | ..-+.+......+.=.++..+++..+.+|.-
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n------~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN------NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 346778888888899999999999988764321 222 2 1112222222466777778888888877753
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.032 Score=54.86 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
+..-+.-..+.|+++.|+..|+......|.. ...-+.++..+.+.+++++|+..++|-++++ |.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCC
Confidence 3444444456677777777777777666532 2344444444556677777777777777776 44443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.8 Score=50.32 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=92.8
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCC----
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSP---- 457 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P---- 457 (1169)
.......|+.++.+..+.|.++.|...+.++...... ..+.+.+.++++++..|+-.+|...++..+. .+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3455689999999999999999999999998874422 2678999999999999999999998877532 1110
Q ss_pred ----------------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 458 ----------------------------GLLEAIIKHANMERRL------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 458 ----------------------------~~~~~~~~~a~~e~r~------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
....+++.++.+.... +..+++...|..++...+. ....|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEKAW 295 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHHHH
Confidence 0224578888888777 8899999999999998753 24467
Q ss_pred HHHHHHHHH
Q 001060 504 AQYSRFLHL 512 (1169)
Q Consensus 504 ~~~a~~~~~ 512 (1169)
..|+.+...
T Consensus 296 ~~~a~~~~~ 304 (352)
T PF02259_consen 296 HSWALFNDK 304 (352)
T ss_pred HHHHHHHHH
Confidence 777777554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=64.26 Aligned_cols=106 Identities=17% Similarity=0.070 Sum_probs=85.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 511 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~ 511 (1169)
+.-+.++|.+++|+.+|.+. +.+.|.++-.+.+++..+.++..|..|+.-++.|+.++. .+-..|..-+.. +
T Consensus 104 GN~yFKQgKy~EAIDCYs~~-ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~A-R 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTA-IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQA-R 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhh-hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHH-H
Confidence 44556899999999999998 889999999999999999999999999999999999873 122233333222 2
Q ss_pred HHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 512 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 512 ~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
..+|++++|.+-++.+|.+.|++-.|-..++.+.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 2488999999999999999999877776665544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0027 Score=46.37 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=21.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001060 124 YDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 155 (1169)
Q Consensus 124 ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 155 (1169)
|+++|+.+|++..+|..++.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=2.6 Score=49.05 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=105.6
Q ss_pred HHcCChHHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH--HHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACA----------NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE--IHLFAARF 434 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~----------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~--l~~~~a~~ 434 (1169)
.-.|++.+++........-|- +.+.+.+-++.|-..-+-++.|..-|..|++.....+-. +-..+|..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 456888877766666555543 334566667777667788999999999988765222222 22346777
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGL----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~----------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
+.+.|+-+.-.++++.+ .|.+ ..+++.++.+...++++.+|+..+.+.++... .++...+-..+.
T Consensus 414 YL~~~~~ed~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL~a~~L 488 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRLTACSL 488 (629)
T ss_pred HHHhccHHHHHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHHHHHHH
Confidence 78888766666665553 4431 23578888899999999999999999998763 222111111222
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
-+....+...|+..+++++.+-++++.
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHH
Confidence 222233345899999999999988854
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.21 Score=52.60 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHH
Q 001060 370 GDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 443 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~ 443 (1169)
+.+++|..+|.|+--.... --+.+...+.+..+.|+-.+|...|-.|- ..+ +..+..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~---------------~cy-kk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA---------------NCY-KKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---------------HHh-hccChHH
Confidence 4677777777776433211 11234444444444444444443333333 222 3446777
Q ss_pred HHHHHHHHhhhcCCChHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 444 ARAAYQLVHTETSPGLLE------AIIKHANMERRL-GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~~~~------~~~~~a~~e~r~-g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
|..+++++ +++..+... .++..+.++... .++++|+..|+.|-+...+.+.....-.-++..+.+... .++
T Consensus 92 Av~cL~~a-ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leq 169 (288)
T KOG1586|consen 92 AVNCLEKA-IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQ 169 (288)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHH
Confidence 77777776 444433222 244566665544 789999999999999877544321112235566666555 888
Q ss_pred HHHHHHHHHHHhhhcCCCH
Q 001060 517 AEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.+|+.+|++.....-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999888765554
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.004 Score=75.72 Aligned_cols=24 Identities=21% Similarity=0.023 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHH
Q 001060 576 NAAEREELSCVFLEFLGLFGDAQL 599 (1169)
Q Consensus 576 ~~~~~~~i~~~~l~fe~~~Gd~~~ 599 (1169)
+...-..++-.|+.--..||+++.
T Consensus 651 pgwa~i~~L~~~ll~~~~fg~~~~ 674 (1282)
T KOG0921|consen 651 PGWAEIMTLCNRLLEHQEFGQANK 674 (1282)
T ss_pred CchHHhhhhhhhhhhhhhhccchh
Confidence 344444555566655566666543
|
|
| >KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0064 Score=64.20 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1049 EIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1049 ~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
+|-..|+ +||+|+.+ .|.+.-.-..+|-++|.|...++|++|++. |+--|+|++|..++
T Consensus 84 d~f~E~~~kygEiee~--~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEEL--NVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHhhhhhhh--hhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 4444444 99999985 355554456788999999999999999987 89999999998865
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.39 Score=51.83 Aligned_cols=167 Identities=16% Similarity=0.100 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH---HH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IH 428 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~---l~ 428 (1169)
....|..-+.-+.+.|++++|+..|+.+....|..+ .+-+.++..+.+.++++.|+..++|-+.++ |.++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHH
Confidence 356677777777889999999999999998877544 566677777778899999999999999988 54443 23
Q ss_pred HHHHHHHHH-----cCCHHHHHHH---HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001060 429 LFAARFKEQ-----NGDIDGARAA---YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500 (1169)
Q Consensus 429 ~~~a~~~e~-----~g~~~~A~~~---~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~ 500 (1169)
++.+..... ..|...++.. |+.. +...|+..-+ ..|..-+..+.... .
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~-i~ryPnS~Ya--------------~dA~~~i~~~~d~L---------A 167 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKEL-VQRYPNSRYA--------------PDAKARIVKLNDAL---------A 167 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHH-HHHCCCCcch--------------hhHHHHHHHHHHHH---------H
Confidence 333322221 1222223333 3332 4445543211 11111111111110 1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
..=...++|..+ .|.+-.|..-++..++..|+.....+++..++..
T Consensus 168 ~~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea 213 (254)
T COG4105 168 GHEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSAVREALARLEEA 213 (254)
T ss_pred HHHHHHHHHHHH-hcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 112345677666 8889999999999999999888777776666644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=51.79 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACA-------NYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~-------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
..+..++..+...|++++|+..|++|+.... ....++..++.++...|++++|++.|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4455666666666777777777777765521 112355666666666666666666666666554
|
... |
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0053 Score=43.33 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 150 ~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
.+++|+.||+|.|..+| ++..|+.|++|+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 45666777777766664 566677776664
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.029 Score=56.96 Aligned_cols=65 Identities=8% Similarity=-0.034 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 372 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 372 ~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~----------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
++.+++.++.....+|.+.+.+++++..|..+.+ +++|+.-|+.||.+. |+...++..++..+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 4568888999999999999999999988876532 355667777777777 6666666666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0081 Score=61.58 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=49.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
...++||.||..++++++|+.+|+.|--...++ ++.+ . +-+.|||+|++.+.|..|+.. .|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~--~~~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILK--IRAR-G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEE--EecC-C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 356899999999999999999999998776533 4443 2 346899999999988888865 35444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.7 Score=48.66 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHhhcCCHHHHHHH
Q 001060 120 IRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-----DIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 120 Ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-----~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
|....+-+++..-.. ...+++++.-..+.-++.+++.+..-++..-.... ........-.. -.+.++++.+.
T Consensus 66 a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Les 144 (518)
T KOG1941|consen 66 AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALES 144 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHH
Confidence 334444444433222 45667777777788888899888888887532222 11111111111 23567889999
Q ss_pred HHHHHHhcC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 193 FERGLAYVG---TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 193 ~erAl~~~g---~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
||.|+++.. .......+...+..+.-..++++++.-.-.+++++
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 999998642 22234566677777777778888877666666654
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.035 Score=69.49 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHhcCCCeeeee---EEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1042 PSTVTAFEIEEEFQNFGRIKPDG---VFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1042 p~~~t~~~L~~~F~~~G~i~~~~---i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
-..++..+|-.++..-+.|..-. |.+.+ .|.||+-.. ..+...+.. ++..+.|+.|.|+..+
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 35788889988887666564422 12222 488999865 446666665 6889999999999865
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0062 Score=44.45 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 379 YERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 379 yeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
|+|+|+.+|.+++.|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67777777777777777777777777777664
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.015 Score=67.15 Aligned_cols=69 Identities=26% Similarity=0.260 Sum_probs=59.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLA 1101 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~ 1101 (1169)
+.++||||+||--++.++|..+|. -||-|..++|-+ |.+-+-++|-|-|+|.+..+..+||.+.-++|.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt-D~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~ 438 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT-DPKLKYPKGAGRVTFSNQQAYIKAISARFVQLD 438 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc-CcccCCCCCcceeeecccHHHHHHHhhheEEEe
Confidence 569999999999999999999998 799999998744 444556889999999999999999998655544
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.01 Score=42.38 Aligned_cols=31 Identities=35% Similarity=0.773 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~ 146 (1169)
++++++.+|++++..+|.+..+|..|++++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 6789999999999999999999999999885
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.2 Score=47.93 Aligned_cols=212 Identities=14% Similarity=0.052 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhccCCH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD-GDFNKVVKLYERCLIACANYP 390 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~-gd~~~a~~lyeraL~~~~~~~ 390 (1169)
..++.+.-.+.++.+.++-..|+..-+.+|. ++|.+.-+|+.--..+... .+..+-+..+.+.+..+|.+.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~--------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY 112 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIR--------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY 112 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHH--------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch
Confidence 3445555566677778888889999999998 8899999998766555443 466777888899999999999
Q ss_pred HHHHHHHHHHHHcCChH-HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH----H------------------
Q 001060 391 EYWIRYVLCMEASGSMD-LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA----A------------------ 447 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e-~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~----~------------------ 447 (1169)
.+|..-=.+++..|+.. .-+....+++... -++-.+|...--+....+.++.-+. +
T Consensus 113 QvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi 191 (318)
T KOG0530|consen 113 QVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVI 191 (318)
T ss_pred hHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEE
Confidence 99998888788778765 4556677777644 4444455443222222222322111 1
Q ss_pred ------------------HHHHhhhcCCChHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 448 ------------------YQLVHTETSPGLLEAIIKHANMERR-LG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 448 ------------------~~~a~~~~~P~~~~~~~~~a~~e~r-~g--~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
..+ .+.+.|++..+|..+..++.. .| ...++.......+... ++ ..|.+...+
T Consensus 192 ~~~~~~~~~~~le~El~yt~~-~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~-~~----~sP~lla~l 265 (318)
T KOG0530|consen 192 TNTKGVISKAELERELNYTKD-KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQL-PK----RSPFLLAFL 265 (318)
T ss_pred EeccCCccHHHHHHHHHHHHH-HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhcc-CC----CChhHHHHH
Confidence 112 256789999999888888765 33 1344444444444221 11 224444444
Q ss_pred HHHH-----HHHhCCHH---HHHHHHHHHh-hhcCCCHHHH
Q 001060 507 SRFL-----HLVSRNAE---KARQILVDSL-DHVQLSKPLL 538 (1169)
Q Consensus 507 a~~~-----~~~~g~~e---~Ar~i~~kAl-~~~p~s~~l~ 538 (1169)
.+++ ....+.-+ +|.++|+..- +.+|-.+.+|
T Consensus 266 ~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW 306 (318)
T KOG0530|consen 266 LDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYW 306 (318)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4443 22233333 3444554433 4555555555
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.014 Score=63.14 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=58.7
Q ss_pred ceEEEEecCCCCCCHHHH------HHHHhcCCCeeeeeEEeecCCCc---cccc-E-EEEEECCHHHHHHHHHh-CCCee
Q 001060 1033 VKSVYVRNLPSTVTAFEI------EEEFQNFGRIKPDGVFVRNRKDV---VGVC-Y-AFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L------~~~F~~~G~i~~~~i~~~~~~~g---~~~g-~-afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
..-+||-+||+.+..+++ .++|.+||.|+.+-| ++++. ...+ + .||+|.+.++|.++|.. .|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv---Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV---NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEe---cccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 456899999988877662 578999999998532 33331 1123 2 29999999999999988 89999
Q ss_pred eceEEEEEeccC
Q 001060 1101 AGRQVYIEERRP 1112 (1169)
Q Consensus 1101 ~g~~l~V~~~r~ 1112 (1169)
+||.|+..+...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999876543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.5 Score=47.39 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=98.9
Q ss_pred HHHhhccCCc----ccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHc---C----
Q 001060 337 FETAIRRPYF----HVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-WIRYVLCMEAS---G---- 404 (1169)
Q Consensus 337 ~e~al~r~~~----~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~-W~~~a~~l~~~---g---- 404 (1169)
|++|++ +| +-.|..+-.-..-..++-..-+.++++.|+...+|-+...|.++++ |..|...+..- .
T Consensus 50 ~~~A~~--~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 50 YEEAIK--YFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred HHHHHH--HHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 666665 22 2223333333444444545567899999999999999999998873 44444444322 1
Q ss_pred C---hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001060 405 S---MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481 (1169)
Q Consensus 405 ~---~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 481 (1169)
+ ...|...|+..++.+ |++.-.-....++- .++. .....=+..+.++.+.|.+..|..
T Consensus 128 Dq~~~~~A~~~f~~~i~ry-PnS~Ya~dA~~~i~-------~~~d-----------~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 128 DQSAARAAFAAFKELVQRY-PNSRYAPDAKARIV-------KLND-----------ALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCCcchhhHHHHHH-------HHHH-----------HHHHHHHHHHHHHHHhcChHHHHH
Confidence 1 234666777777777 55432211111110 1111 111222456788889999999999
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh-hcCCCH
Q 001060 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD-HVQLSK 535 (1169)
Q Consensus 482 iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~-~~p~s~ 535 (1169)
-++..++..+...+ ..+.+..+...++. .|-.++|-+. .+.|. ..|++.
T Consensus 189 R~~~v~e~y~~t~~---~~eaL~~l~eaY~~-lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 189 RFEEVLENYPDTSA---VREALARLEEAYYA-LGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhccccccc---hHHHHHHHHHHHHH-hCChHHHHHH-HHHHHhcCCCCc
Confidence 99999998764322 12233334444444 7877777666 44444 446665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.089 Score=52.80 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 198 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~ 198 (1169)
....++.++...|++++|+.++++++..+|.+..+|..++..+. ..|+...|+++|++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 44556666777788888888888888888888888888888887 77888888888887765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.096 Score=58.67 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=63.7
Q ss_pred ceEEEEecCC-CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
...|.|.||. ..+|.+-|-.+|+-||.|.+|+|+. +++ --|.|.+.|...|+-|++. +|+.+.|++|+|...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~-nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY-NKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee-cCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 3678899996 5689999999999999999988643 443 3799999999999999987 799999999999987
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
|-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 74
|
|
| >PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.067 Score=46.88 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=45.4
Q ss_pred eEEEEecCCCCCCHHH----HHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1034 KSVYVRNLPSTVTAFE----IEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~----L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
..|||.|||.+.+... |++++..|| .|.. + ..|.|+|-|.+.+.|.+|.+. .|-.+-|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~----v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS----V-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE----E-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 4689999999988764 567777887 4433 2 236899999999999999987 788899999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 88743
|
Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A. |
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.017 Score=40.86 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~ 146 (1169)
.+++||.+|++++..+|. ...|++||.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 588999999999999987 588999999984
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.26 Score=54.25 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-c---cCCHHHHHHHHHHHHHcC
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-C---ANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~-~---~~~~e~W~~~a~~l~~~g 404 (1169)
+.-+|-...++.|. ..|.++-.|..-=+.+--+|+...-+.++++.+-. + |-+.-+.-.|+..|+..|
T Consensus 118 ~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred cccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34444445666666 35666666666555444567777777888887754 2 334556678888899999
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-H---HHHHHHHHHHHHcCCHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-L---EAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~---~~~~~~a~~e~r~g~~e~A~ 480 (1169)
-+++|.+.-+||++++ +.+.......+.+++.+|++.++.+...+. ....... . -.|.-.+.++...+.++.|.
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t-ed~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT-EDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc-ccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999999998 788889999999999999999999988874 2222211 1 12445566666678999999
Q ss_pred HHHHHHHHhh
Q 001060 481 SLYEQAIAIE 490 (1169)
Q Consensus 481 ~iy~~Al~~~ 490 (1169)
.+|++-|-..
T Consensus 268 eIyD~ei~k~ 277 (491)
T KOG2610|consen 268 EIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHH
Confidence 9998766543
|
|
| >KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.029 Score=61.08 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.9
Q ss_pred hHhHHHHHHHHh
Q 001060 723 VGSYFVGQYYQV 734 (1169)
Q Consensus 723 vg~~Fv~~YY~~ 734 (1169)
+-.+|-+.||+.
T Consensus 206 ~~~~~~~ey~~R 217 (465)
T KOG3973|consen 206 QCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHH
Confidence 677899999975
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.56 Score=56.78 Aligned_cols=168 Identities=13% Similarity=0.150 Sum_probs=110.5
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH------HHHHHH-HHHH----HcCChHHHHHHHHHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYV-LCME----ASGSMDLAHNALARATHV 419 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e------~W~~~a-~~l~----~~g~~e~A~~vl~rAl~~ 419 (1169)
+-|..+--...++.| .||-+..+.++.+|......... +|+..+ ..+. .....+.|..++.+..+.
T Consensus 186 lLPp~~~kll~~vGF---~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGF---SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR 262 (468)
T ss_pred hCCHHHHHHHhhcCc---CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh
Confidence 334444444444444 58999999999998875433322 222222 2121 133568899999999999
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL----EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
+ |+..-..++.|+++...|++++|...|+++. ....... -.++.++....-+.++++|...|.+.++...-
T Consensus 263 y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--- 337 (468)
T PF10300_consen 263 Y-PNSALFLFFEGRLERLKGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--- 337 (468)
T ss_pred C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc---
Confidence 9 8888888889999999999999999999873 2222211 23566677777789999999999999986531
Q ss_pred cCchHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHhh
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNA-------EKARQILVDSLD 529 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~-------e~Ar~i~~kAl~ 529 (1169)
...+|...+-..+...++. ++|.++|+++-.
T Consensus 338 ---Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 338 ---SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ---HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2334433333333337777 666666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2 Score=46.19 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=110.7
Q ss_pred ChhcHHHHHHHHH--------HHHHcCChHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-
Q 001060 352 SVTELENWHNYLD--------FIERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 421 (1169)
Q Consensus 352 ~~~~~~~W~~yl~--------~~~~~gd~~~a~~lyeraL~~~-~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~- 421 (1169)
....++.|.+-+. +..-.|.+.-.+.+|.+.+..+ +..+.+-..++..-.+-||.+.|...|++.-+...
T Consensus 165 ~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k 244 (366)
T KOG2796|consen 165 EESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK 244 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 3556777877544 3345577778888999999887 67788888999988899999999988886543221
Q ss_pred ----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 422 ----KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 422 ----p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
...-.++...+.++.-.+++.+|...|.++ .+.+|.++.+....+.+..=+|+...|++.++.++...|.
T Consensus 245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i-~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI-LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhccchhHHHHhhhhhheecccchHHHHHHHhhc-cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 124456666777777788999999999997 7789999988888888888889999999999999999875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 143 DHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 143 ~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
+-+.+.|++..-+..|+.+|+.-..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe 49 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE 49 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch
Confidence 3345667777777777777776443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.44 E-value=4.2 Score=52.38 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 417 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl 417 (1169)
.|-.-.++.++.|-+.+++.+|.--.+ .+..++..||..|.....+++|.-.|+++-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e---~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSE---KQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHH---HHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 455566666777766666665544331 234577778888877777777665554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.63 Score=53.70 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---hccChHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhcCCChHH
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVF---VKRLPEIHLFAARFKEQ---NGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~---~p~~~~l~~~~a~~~e~---~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
.++++-+.+...|....+++..+++.+..-.+- ..+.+.+.++||-.+.+ .|+.++|+.++..++....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 456677777777777778888887776654430 24678889999999998 899999999999965666777888
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-HH---HHHHHHHHH-
Q 001060 462 AIIKHANMERRL---------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-AE---KARQILVDS- 527 (1169)
Q Consensus 462 ~~~~~a~~e~r~---------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~e---~Ar~i~~kA- 527 (1169)
++...+.++.++ ..+++|+..|.++.+..++ . + --++++-++.. .|. .+ +.+++--+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~----Y--~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-Y----Y--SGINAATLLML-AGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-c----c--chHHHHHHHHH-cCCcccchHHHHHHHHHHH
Confidence 877777766433 2478999999999998742 1 1 12566666555 553 32 333433111
Q ss_pred --h-h--hcCCCHHHHHHHHHhHhh--CCChhHHHHHHHHHHHHhhcC
Q 001060 528 --L-D--HVQLSKPLLEALIHFESI--QSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 528 --l-~--~~p~s~~l~~~~a~~E~~--~~~~~~~~~~r~l~eral~~~ 568 (1169)
+ + .......+|.---.+|.. .++ .+.+...+++++...
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcC
Confidence 1 1 112335788755555554 344 566888889888764
|
|
| >PF15008 DUF4518: Domain of unknown function (DUF4518) | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.08 Score=57.37 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=84.3
Q ss_pred CCc-chhHhHHHHHHHHhhhh--CcccccccccCCceEEEE-cCCcc-c-chhhHHHHHHHHhcCCCcce-----eEee-
Q 001060 718 AYP-AQVGSYFVGQYYQVLQQ--QPDLVHQFYSDASSMIRV-DGDST-E-SASSMLDIHSLVISLNFTAI-----EIKT- 785 (1169)
Q Consensus 718 ~~~-~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~~~~~-~g~~~-~-~~~~~~~I~~~~~~l~~~~~-----~i~~- 785 (1169)
.|| ..+|..|.+.||.+|+. +-=..--|+.|-+--+.+ .++.. . -..|-+.+..+|.+|-.+.. .+.+
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~ 203 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSD 203 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCC
Confidence 444 55999999999999999 444466788884322222 22221 2 22466677889999876532 3554
Q ss_pred -eeccccCCCceEEEEEEEEEecCccccceeEEEEEEEeeC---CeEEEEcceEEec
Q 001060 786 -INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFL 838 (1169)
Q Consensus 786 -~d~q~~~~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nDifr~~ 838 (1169)
+.|-.+..|-|+|.|.|+|-.++.+ .=-|=|.|=|...+ |.|.|.+=-+|..
T Consensus 204 G~k~~~~phGlV~V~v~GTvH~~~~C-lGiFEq~FGLiRdP~~~N~WKiK~~~l~i~ 259 (262)
T PF15008_consen 204 GVKGRISPHGLVLVAVCGTVHRDNTC-LGIFEQIFGLIRDPFAENNWKIKFVNLRIR 259 (262)
T ss_pred CcceEEcCCCcEEEEEeeeEecCCce-EeehhhhhhcccCccccCceeEEEEEEEEE
Confidence 6666688888999999999887764 44599999998765 8999987666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.44 Score=52.32 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
...|++..+..+|..++...+.+.++-..|+.+|...|+.+.|..+|...=.....+..........++++.....+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 46789999999999999999999999999999999999999999888653221101111121234466666655555544
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+-.+ ...+|++.++-+.++..+...|+.+.|...+-..+..+
T Consensus 225 l~~~--~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 225 LQRR--LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHH--HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4444 35699999999999999999999999888776666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.96 Score=53.03 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=107.6
Q ss_pred HcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------h----cC--C---------C-
Q 001060 402 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-------E----TS--P---------G- 458 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-------~----~~--P---------~- 458 (1169)
+..+...-+++-.+|+++. |++..+|+.+|. +....+.+|..+|++++. + .. + .
T Consensus 180 RERnp~aRIkaA~eALei~-pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN-PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh-hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 4456666677788899988 899999998873 345567778888776511 0 00 0 0
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh-cCCCHH
Q 001060 459 -LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-VQLSKP 536 (1169)
Q Consensus 459 -~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~-~p~s~~ 536 (1169)
..-+-.+++.+.+++|+.++|++.|+..++.+|.. ++-.+...+...+.. .+.+.++..++.+-=.. -|+++.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----DNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----chhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHH
Confidence 01234677888899999999999999999887632 234467777777776 88999999998885333 367776
Q ss_pred HHHHHHHhHhhC-CCh---h---------HHHHHHHHHHHHhhcCCCCC
Q 001060 537 LLEALIHFESIQ-SSP---K---------QIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 537 l~~~~a~~E~~~-~~~---~---------~~~~~r~l~eral~~~~~~~ 572 (1169)
+...-+.+..+. ++. + ....+...+.||++.+|-.+
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 666555554332 211 0 01234456777777766544
|
The molecular function of this protein is uncertain. |
| >PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT [] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.052 Score=50.23 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=50.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecC------CCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR------KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVY 1106 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~------~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~ 1106 (1169)
.+.|.|-+.|... ...+-+.|++||.|.+..-..++. ......++-.|.|+++.+|.+||..||..|+|..+.
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 4668888999874 455779999999997642001110 011244689999999999999999999999987643
Q ss_pred -EEec
Q 001060 1107 -IEER 1110 (1169)
Q Consensus 1107 -V~~~ 1110 (1169)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 4443
|
This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=11 Score=46.86 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC
Q 001060 115 DNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD 185 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~ 185 (1169)
+.+++|..+-+.....-|. -...|..|+++++-.++++.|-.++-+++. ++...|-.+..... ..+.
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~-e~~~ 438 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFA-ELDQ 438 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhc-cccc
Confidence 3667777666655554443 457899999999999999999988877775 57788876654443 4443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.58 Score=54.46 Aligned_cols=161 Identities=13% Similarity=0.038 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-------------------------ccC
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-------------------------KRL 424 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-------------------------p~~ 424 (1169)
.|++..+. +|..+|.+.+..+.++.++..+|+.+.|.++++||+-.+. +.+
T Consensus 24 ~Dp~~l~~----ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eN 99 (360)
T PF04910_consen 24 HDPNALIN----LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPEN 99 (360)
T ss_pred cCHHHHHH----HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccc
Confidence 35555543 3566788999999999988888888888888888764331 112
Q ss_pred hHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCch
Q 001060 425 PEIH---LFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 425 ~~l~---~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e-~r~g~~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
..+| +.+...+.+.|-+..|.++.+-+ ..++|. ++-..+.+++++ .+.++++-.+.+++........+ ....+
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlL-lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~l 177 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLL-LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLL 177 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhC
Confidence 2333 33567788899999999998876 789998 776666666655 56677887888888765531100 00013
Q ss_pred HHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHhhhcCCCHHH
Q 001060 500 PMLYAQYSRFLHLVSRNA---------------EKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~---------------e~Ar~i~~kAl~~~p~s~~l 537 (1169)
|.+-...+-.++. .++. ++|+..+++|+..+|.-...
T Consensus 178 Pn~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~ 229 (360)
T PF04910_consen 178 PNFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVP 229 (360)
T ss_pred ccHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHHHHHH
Confidence 4444444333334 4445 89999999999999865433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.011 Score=65.21 Aligned_cols=75 Identities=25% Similarity=0.251 Sum_probs=58.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCee--eeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
-.|..++||+++++.++.++|..--+|+ ..+|+...+..|+..|-|||.|...++|+.||..+.-.|+-|.|.+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567889999999999999997433333 12244556667899999999999999999999998777877766653
|
|
| >PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.041 Score=44.68 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=40.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHH
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai 1093 (1169)
+.|-|.|.+.+..+. +..+|..||+|..+. +.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~--~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIY--VPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEE--cCC-----CCcEEEEEECCHHHHHhhC
Confidence 567888998776655 556999999999854 321 2358999999999999985
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.038 Score=39.94 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
.+|..++.++...|++++|++.|+++|.+.|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.6 Score=45.48 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=144.6
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH-HHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID-GAR 445 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~-~A~ 445 (1169)
+...-.||+.+-+.||..+|-+..+|.---.++... .++.+-++.+.+.++-. |++-.+|...-.+.+..|+.. .-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 344567999999999999999999998777777654 35667778899988877 889999999988889999877 566
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKA 520 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~e~A 520 (1169)
++.+++ +..+..+.-+|.-+-.+.+..+.++.-...-.+.|+.+.-++ ..|.+-..+.....| .++.=
T Consensus 134 ef~~~~-l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN------SAWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 134 EFTKLM-LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN------SAWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred HHHHHH-HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc------chhheeeEEEEeccCCccHHHHHHH
Confidence 777776 667888888998888888888889988888888888764322 134221100000012 13445
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHhHhh-CC---ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH-HHHHHhhC
Q 001060 521 RQILVDSLDHVQLSKPLLEALIHFESI-QS---SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF-LEFLGLFG 595 (1169)
Q Consensus 521 r~i~~kAl~~~p~s~~l~~~~a~~E~~-~~---~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~-l~fe~~~G 595 (1169)
.....+.+...|+|..-|.-+.-+... .| +++-++.+..++ +.... -+|..-..|...| .+++....
T Consensus 207 l~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~---~~~~~-----~sP~lla~l~d~~~e~~l~~~~ 278 (318)
T KOG0530|consen 207 LNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY---LQLPK-----RSPFLLAFLLDLYAEDALAYKS 278 (318)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh---hccCC-----CChhHHHHHHHHHHHHHhhccc
Confidence 667788899999999988766655553 22 222233444443 22221 2345555677777 55665544
Q ss_pred C
Q 001060 596 D 596 (1169)
Q Consensus 596 d 596 (1169)
+
T Consensus 279 ~ 279 (318)
T KOG0530|consen 279 S 279 (318)
T ss_pred c
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.32 Score=53.59 Aligned_cols=158 Identities=13% Similarity=-0.054 Sum_probs=118.4
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~~A 444 (1169)
-.|++.+|-..+++.|...|.+.-.|-.--..+.-.|..+.-++.++|.+-...++. .-++=+|+--+++.|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 457788888899999999999988888777777778888888889988876533444 45666788889999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 524 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~ 524 (1169)
.+.-+++ .++|+.+.-+.-..+.+..-.+++.++.+.+.+--..=. ........-|-+++-|+.. .+.++.|..||
T Consensus 195 Ek~A~ra-lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE-~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRA-LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIE-GAEYEKALEIY 270 (491)
T ss_pred HHHHHhh-ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhc-ccchhHHHHHH
Confidence 9999998 789998887777777788888899999888765432211 0011112235566766555 67899999999
Q ss_pred HHHhh
Q 001060 525 VDSLD 529 (1169)
Q Consensus 525 ~kAl~ 529 (1169)
.+-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 86553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=13 Score=47.14 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
++++|-..-++. +.+..|-.++..-++.+...+|++-|-|+ +++.-+..-++... +.|.+++..+++..
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~-~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVAS-RTGKYEDLVKYLLM 1158 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 455554444443 34678888888888888888888877554 33444455555544 56677777666666
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 001060 196 GLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~ 215 (1169)
|-+.....+....|...|.+
T Consensus 1159 aRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHhhcCccchHHHHHHHHH
Confidence 66554433334455555554
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.047 Score=63.21 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=48.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--cccc---EEEEEECCHHHHHHHHHh
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVC---YAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g---~afV~F~~~~~a~~Ai~~ 1095 (1169)
-.++||||+||++++|+.|...|..||.++- +-..+....+ -.+| |+|+.|++..++++-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4689999999999999999999999999862 1111111111 2456 999999999999987766
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.082 Score=55.18 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=57.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~~~ 1110 (1169)
...+|+.|||.+++.+.|..+|.+|.-.+.++. +..+ ++.|||+|.+...+..|... .+..|- ...++|.++
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 478999999999999999999999999998753 4322 37999999998888888876 566665 666777654
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.12 Score=61.08 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=79.6
Q ss_pred chhHhHHHHHHHHhhhhCc-ccccccccCCceEEEE-cCCcc------------------------------cchhhHHH
Q 001060 721 AQVGSYFVGQYYQVLQQQP-DLVHQFYSDASSMIRV-DGDST------------------------------ESASSMLD 768 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p-~~l~~fY~~~s~~~~~-~g~~~------------------------------~~~~~~~~ 768 (1169)
-++-.+|+++||...+.+. ..+-..|+++|.|.+- +.... ....|..+
T Consensus 338 ~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~ 417 (585)
T KOG3763|consen 338 KQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACD 417 (585)
T ss_pred HHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchH
Confidence 3567799999999999655 4567777888888752 11100 12345568
Q ss_pred HHHHHhcCCCcceeEe----eeeccccCCCceEEEEEEEEEecCc---cccce---eEEEEEEEeeC-CeEEEEcceEE
Q 001060 769 IHSLVISLNFTAIEIK----TINSLGSWNGGVLVMVSGSVKTKEF---CRRRK---FVQTFFLAPQE-KGYFVLNDIFH 836 (1169)
Q Consensus 769 I~~~~~~l~~~~~~i~----~~d~q~~~~~~ilv~v~G~~~~~~~---~~~~~---F~q~F~L~~~~-~~y~v~nDifr 836 (1169)
|...+..||-+.+.+. .+-.|. ..++.+.|.|.+.-.+. ..-++ |+-||+..|-+ .+-.|.||.+-
T Consensus 418 Iv~aLs~LPkT~Hdl~s~vvDv~~~~--~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~Lf 494 (585)
T KOG3763|consen 418 IVVALSALPKTQHDLDSFVVDVWYQT--GNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQLF 494 (585)
T ss_pred HHHHHHhCccchhhhhhhheeeeecc--cceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEeceeE
Confidence 9999999998776433 344444 35788999999864322 11234 99999999987 68999999883
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.033 Score=68.17 Aligned_cols=11 Identities=9% Similarity=-0.134 Sum_probs=5.1
Q ss_pred eeEEEEEEEee
Q 001060 814 KFVQTFFLAPQ 824 (1169)
Q Consensus 814 ~F~q~F~L~~~ 824 (1169)
.|-+-|.|.-.
T Consensus 890 ~~~~~~rl~g~ 900 (1282)
T KOG0921|consen 890 REKHHSRLSGT 900 (1282)
T ss_pred ccccccccccc
Confidence 34444555443
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.27 Score=49.27 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=48.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
..+|.|.+||...++.+|+++..+-|.|...++. + -|.+.|+|-..+++.=||..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~-r-------Dg~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ-R-------DGVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee-c-------ccceeeeeeehhhHHHHHHh
Confidence 4789999999999999999999999999886642 1 15899999999999999976
|
|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.078 Score=62.93 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=65.0
Q ss_pred Cce-EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVK-SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~-~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
++. .|-+.|+|++++-+||.+||.-|-.+-. .|.++....|+..|-|.|-|++.+.|.+|... ++..|..|.|++.
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCC-ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 444 6789999999999999999999966543 35677777899999999999999999999876 7999999988875
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.073 Score=38.38 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 500 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+.+|..++.+++. .|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 3578888888887 999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.022 Score=63.56 Aligned_cols=72 Identities=28% Similarity=0.317 Sum_probs=57.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~ 1108 (1169)
+++-|.++|||++++|++|-.++.+||.|..+.+ + +++.-||++|.|.++|...+.- -.-.+.|+.|.|.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~-l------kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLM-L------KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeee-e------ccchhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 5688999999999999999999999999998542 2 2345899999999888774433 2566788888886
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
+.
T Consensus 100 ~s 101 (492)
T KOG1190|consen 100 YS 101 (492)
T ss_pred hh
Confidence 53
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.2 Score=50.26 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
.++..++..+...|++++++.++++++..+|.+..+|..++..+...|+..+|+.+|++....+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4566677777889999999999999999999999999999999999999999999998877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.28 Score=51.84 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
.+..++..|-|+|..+|..+..|..-|.++.+..+++.+..-..||+++. |+....+++++....+...+++|+..+.+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999987 89999999999999999999999999998
Q ss_pred H
Q 001060 451 V 451 (1169)
Q Consensus 451 a 451 (1169)
+
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 7
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=14 Score=43.59 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARF 434 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~~ 434 (1169)
-.+..+++.+.++ ..++...+++|.++.|-++..+=..++.+|++ ++...+...|.+|+..+-|+ +..+.-.|..+
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL 177 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL 177 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 3466677777666 56788899999999999999999999999987 77888999999999877653 34444455555
Q ss_pred HHH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 435 KEQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHA-NMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 435 ~e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a-~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
-+- ..+.+.-..+..++...+.-+...+.+... .-+....|+++|+.++...++.+.
T Consensus 178 ~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 178 PELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 443 446667777777764455555556666655 344556789999999998888763
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.072 Score=38.60 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
..|..++..+...+++++|+..|+++|++.|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.093 Score=51.50 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccCCC
Q 001060 1049 EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1049 ~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~~~ 1114 (1169)
+|-+.|..||.+.-+++ + .+.-.|+|.+-.+|.+|+..+|+.++|+.|+|..+.+..
T Consensus 52 ~ll~~~~~~GevvLvRf-v--------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRF-V--------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEE-E--------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEE-e--------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 67788899999864432 1 135699999999999999999999999999999988754
|
; PDB: 1UFW_A 2DNR_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.2 Score=53.00 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
.+.....+..+.+...+--|.++|.++. . .-..+++....+++++|..+-++-=+ ..+.+|.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~g-D--------~ksiVqlHve~~~W~eAFalAe~hPe---------~~~dVy~ 808 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMG-D--------LKSLVQLHVETQRWDEAFALAEKHPE---------FKDDVYM 808 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhc-c--------HHHHhhheeecccchHhHhhhhhCcc---------ccccccc
Confidence 3444555666666666666777777651 1 11234455556788888877664332 3356899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 001060 505 QYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
.|++|+.. ..++++|.+.|.+|
T Consensus 809 pyaqwLAE-~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAE-NDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhh-hhhHHHHHHHHHHh
Confidence 99999887 77899999998877
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.58 Score=52.96 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
++.++++...-+|+++.|.+.|++.+.+...-.....-...-..++..++. ..++++|+.++.+-|.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLA 303 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHH
Confidence 456667777778999999999998876542100000001112233333333 4456666666665543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.4 Score=46.97 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
-+++.|++++...|++-++++....+ +...|++..++++++......=+.++|+.-|.++|+++|
T Consensus 231 pLllNy~QC~L~~~e~yevleh~sei-L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEI-LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 47788899999999999999999997 788999999999999988888889999999999999985
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.29 Score=59.16 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.0
Q ss_pred HHHHHHhhh
Q 001060 728 VGQYYQVLQ 736 (1169)
Q Consensus 728 v~~YY~~l~ 736 (1169)
-+|||.+..
T Consensus 421 rpqYykLIE 429 (1102)
T KOG1924|consen 421 RPQYYKLIE 429 (1102)
T ss_pred hHHHHHHHH
Confidence 456666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=12 Score=42.14 Aligned_cols=157 Identities=14% Similarity=0.011 Sum_probs=101.1
Q ss_pred HHcCChHHHHHHHHHHHHhc-cCCHH-------HHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhc------c-------C
Q 001060 367 ERDGDFNKVVKLYERCLIAC-ANYPE-------YWIRYVLCMEASG-SMDLAHNALARATHVFVK------R-------L 424 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~-~~~~e-------~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p------~-------~ 424 (1169)
.+.||++.|...|.||-... ...++ +.+..+.-+...+ ++++|...++||.+++.. . .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35789999999999987765 44443 6666666667778 999999999999988521 1 1
Q ss_pred hHHHHHHHHHHHHcCCH---HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 425 PEIHLFAARFKEQNGDI---DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~---~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
..+...++..+...+.. ++|..+++.+ ..-.|+.+.+++....+..+.++.+++.+++.+++....-. ...-.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l-~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLL-ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---ESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc---cchHH
Confidence 23455566666665554 4455555555 44577777887777777777888899999999998875311 11122
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
..+...+.+.. .+...|...+...|.
T Consensus 160 ~~l~~i~~l~~--~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 160 SILHHIKQLAE--KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHHHh--hCcHHHHHHHHHHHH
Confidence 23333333332 234556666655555
|
It is also involved in sporulation []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.39 Score=55.49 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--------hHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------LLEA 462 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--------~~~~ 462 (1169)
++..-.+.+|....++..+..-..-+..+. .+.+...+..+.++...|++.+|.+++....+...|+ ....
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhee
Confidence 334444444544444444443333344333 5788888999999999999999999998764544555 3446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----CCCc--cCc-----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK-----GKEH--SQT-----LPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~-----~~~~--~~~-----~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
|.+++.+..+.+.+.-+..+|.+|+.... +=.. ..+ .-++..+.+-.+.. .|+...|...|.++.+.
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHH
Confidence 88999999999999999999999996211 0000 000 12345556555454 99999999999999999
Q ss_pred cCCCHHHHHHHHHh
Q 001060 531 VQLSKPLLEALIHF 544 (1169)
Q Consensus 531 ~p~s~~l~~~~a~~ 544 (1169)
+-.++.+|..++.-
T Consensus 365 fh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 365 FHRNPRLWLRLAEC 378 (696)
T ss_pred HhcCcHHHHHHHHH
Confidence 99999999877643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.56 E-value=27 Score=44.01 Aligned_cols=446 Identities=11% Similarity=0.063 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHhCC----CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHhCCHH
Q 001060 83 GEEDRLWNIVKANS----SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFP--LCYGY----WKKYADHEARVGSMD 152 (1169)
Q Consensus 83 ~~~~~l~~al~~nP----~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P--~~~~~----W~~~a~~e~~~~~~e 152 (1169)
.++.-|+-+++..+ .+.-....|+.++-.- ..+++.|+..+++++.+.- ...++ -..++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44566666663222 2455566777776643 3689999999999977653 33222 233455665666555
Q ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHH--hhhH
Q 001060 153 KVVEVYERAVQGVTY-SVDIWLHYCIFAIN----TYGDPETIRRLFERGLAYVG--TDYLSFPLWDKYIEYEYM--QQEW 223 (1169)
Q Consensus 153 ~A~~l~eraL~~~P~-s~~lw~~y~~~~~~----~~~~~e~Ar~~~erAl~~~g--~d~~s~~lw~~y~~~e~~--~~~~ 223 (1169)
|...+++++...-. ....|...++|+.- ..++...|.+.++.+..... .|+ ...+...+.+.... .+..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~-~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP-AVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHhcCCCc
Confidence 99999998886532 23457766666631 12688889999988887653 111 11122222222211 1323
Q ss_pred HHHHHHHHHHHhc---c----h---hhHHHHHHH--HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhh-ccccc
Q 001060 224 SRVAMIYTRILEN---P----I---QQLDRYFSS--FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK-ANEEE 290 (1169)
Q Consensus 224 ~~a~~iY~r~L~~---p----~---~~~~~~~~~--~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~-~~~~~ 290 (1169)
+.+....++++.. + . ..+..++.. ...+......+.+ .+........+........+.. ..++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~---~~~L~~lq~~~~~~~~~~~w~~~~~d~~ 272 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS---KQKLKQLQQFLDEIKKSPSWPSWDEDGS 272 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHhhcCccCCCcCCCee
Confidence 4444555544322 1 0 012211111 1111111111111 1110000001111000000000 00000
Q ss_pred cCCcc---ccc--cCCccccCcchHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHhh-ccCCcccCCC-ChhcH
Q 001060 291 VQPDA---TEQ--TSKPVSAGLTEAEELEK--YIAVREEMYKK-----AKEFDSKIIGFETAI-RRPYFHVKPL-SVTEL 356 (1169)
Q Consensus 291 ~~~~~---~e~--~~~~~~~~~~~~~~~~k--~i~~~~~~y~~-----~~~~~~ai~~~e~al-~r~~~~v~pl-~~~~~ 356 (1169)
+.-.. ... ........++..+...- ++...-.++.. .+=++++++..++.+ +++.....++ .-...
T Consensus 273 i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~ 352 (608)
T PF10345_consen 273 IPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASER 352 (608)
T ss_pred EEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHh
Confidence 00000 000 00111112222222111 12221122221 122344444555544 2111111111 01233
Q ss_pred HHHHHHHHHHH---------HcCChHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCChHHHHHHHHH---
Q 001060 357 ENWHNYLDFIE---------RDGDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALAR--- 415 (1169)
Q Consensus 357 ~~W~~yl~~~~---------~~gd~~~a~~lyeraL~~~~---------~~~e~W~~~a~~l~~~g~~e~A~~vl~r--- 415 (1169)
..|..++.+.. -.+++..+....+.....+. ..+-+++-.|.+....|+++.|...|.+
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 56777665542 34788888888777665543 3466888888888889999999999982
Q ss_pred ----HHHHhhccChHHHHHHH----HHHHHcC--CHHH--HHHHHHHHhhhc---CC-ChHHHHHHHHHHHHHc---CCH
Q 001060 416 ----ATHVFVKRLPEIHLFAA----RFKEQNG--DIDG--ARAAYQLVHTET---SP-GLLEAIIKHANMERRL---GNL 476 (1169)
Q Consensus 416 ----Al~~~~p~~~~l~~~~a----~~~e~~g--~~~~--A~~~~~~a~~~~---~P-~~~~~~~~~a~~e~r~---g~~ 476 (1169)
..... ....++++..+ .++...+ +..+ +..+++.+ ... .| .+...|..+...-... -.+
T Consensus 433 ~~~~~~~~~-~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i-~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 510 (608)
T PF10345_consen 433 LLCEAANRK-SKFRELYILAALNLAIILQYESSRDDSESELNELLEQI-EPLCSNSPNSYNRTAYCLVLATYNTFEPFSS 510 (608)
T ss_pred hhhhhhccC-CcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc-CccccCCccHHHHHHHHHHHHHHhhCCcccc
Confidence 22222 23455555533 2222222 2222 56666653 111 11 1223333333222222 123
Q ss_pred HHHHHHHHHHHHhh-hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC----HHHH
Q 001060 477 EDAFSLYEQAIAIE-KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLL 538 (1169)
Q Consensus 477 e~A~~iy~~Al~~~-~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s----~~l~ 538 (1169)
.+++..+..++... ..-. ....-.+...++.+.+- .|+..+..++..+++...... ..+|
T Consensus 511 ne~k~~l~~~L~~~~~~~~-n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW 575 (608)
T PF10345_consen 511 NEAKRHLQEALKMANNKLG-NSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLW 575 (608)
T ss_pred HHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 57888888888766 2111 11122234445555444 788999888888888765444 3566
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.52 E-value=2.1 Score=44.57 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEA 402 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~---~~~e~W~~~a~~l~~ 402 (1169)
+..+.+..++.++..+ .+..-...|..+++++.+.||.+.|++.|.++...|- +..++|+..+.+...
T Consensus 15 ~~~~Le~elk~~~~n~---------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~ 85 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNL---------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF 85 (177)
T ss_pred HHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3344555555554332 2233346788899999999999999999999998874 445788999988888
Q ss_pred cCChHHHHHHHHHHHHHh
Q 001060 403 SGSMDLAHNALARATHVF 420 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~ 420 (1169)
.+++..+...+.++-.+.
T Consensus 86 ~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 86 FGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 899999988888887755
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.078 Score=58.71 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=60.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
..|.+++||+.++.++|-++|..|-. |+.-+|.+.-+..|+..|-|||+|.+.+++.+|... ++..+.+|.|.|....
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 57889999999999999999998864 333223333345688999999999999999999877 4555568888886543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.2 Score=43.67 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
.++.+.++.+.. -.+.-+.-+.-+...|++.+|..+|..++... +++..+.+.++.++...|+.+.|..+|..+-.
T Consensus 121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 455556665533 23333344444556799999999999999987 78899999999999999999999999887411
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 454 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 454 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
+..-+........+.+..+.....+...+ ++.+..+|+ ...+-+.++..+.. .|+.++|.+.+-..|+.+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l-~~~~aadPd------d~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDL-QRRLAADPD------DVEAALALADQLHL-VGRNEAALEHLLALLRRD 266 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 11111111122345566666555444333 444455543 35677788888766 999999998887777654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.3 Score=45.75 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH-HHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTEL----ENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE-YWIRYVL 398 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~----~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e-~W~~~a~ 398 (1169)
+.++|+..|++.+. +++..- .+...++...-+.+++++.+..|.+.|... .++.+ .-....+
T Consensus 42 ~p~~Al~sF~kVle--------lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD 113 (440)
T KOG1464|consen 42 EPKEALSSFQKVLE--------LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD 113 (440)
T ss_pred CHHHHHHHHHHHHh--------cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 67788888888887 443322 233445555567899999999998887653 23333 3333444
Q ss_pred HHHHcCChHHHHHHHHHHHHHhh-ccChHHHHH----HHHHHHHcCCHHHHHHHHHHHhhhc-----------CCChHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFV-KRLPEIHLF----AARFKEQNGDIDGARAAYQLVHTET-----------SPGLLEA 462 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~-p~~~~l~~~----~a~~~e~~g~~~~A~~~~~~a~~~~-----------~P~~~~~ 462 (1169)
|.....+++...+.|+..+.... -++.++|+. ++.++...+++.+-.++++++.... ....+++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 44445566666666766555431 246677765 6777777777877777777653211 1224566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
|-.-+.++-.+.+-.+...+|+++|.+...--|+..+..+...=+.+..+ .|.+++|-.-|=.|++..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr-eg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc-cchHHHHHhHHHHHHhcc
Confidence 77777788888888999999999998764222222222222222334344 788888888888888754
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.14 Score=37.02 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
++|+..|.++...|++++|+..|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456666666666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.74 Score=42.01 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
..+..|++.++.||.|.++.+.|+..+.. .|+++.|...+-.++..++.. ...-+.++++....|.-+-...-|+|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 56777888888888888888888887776 458888888888888877664 45555666665555554444444444
Q ss_pred HH
Q 001060 161 AV 162 (1169)
Q Consensus 161 aL 162 (1169)
-|
T Consensus 84 kL 85 (90)
T PF14561_consen 84 KL 85 (90)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.42 Score=52.78 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=57.4
Q ss_pred CceEEEEecCC----CCCC-------HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1032 EVKSVYVRNLP----STVT-------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1032 ~~~~i~V~nlp----~~~t-------~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
..++|.++|+- ...+ .++|++--++||.|.+|- |.++ .+.|.+-|.|.+.+.|..||+. +|-.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv--v~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV--VYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE--Eecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 34789999983 2233 245555678999999964 4444 3568999999999999999998 7999
Q ss_pred eeceEEEEEecc
Q 001060 1100 LAGRQVYIEERR 1111 (1169)
Q Consensus 1100 i~g~~l~V~~~r 1111 (1169)
|+||.|..+..-
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999876543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.21 Score=58.18 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=53.6
Q ss_pred eEEEEecCCCCCCH------HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec-eEE
Q 001060 1034 KSVYVRNLPSTVTA------FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-RQV 1105 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~------~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g-~~l 1105 (1169)
..|+|-|+|---.. .-|..+|+++|+|..+-+ .-...|.++||.|++|.+..+|+.|++. +|+.|+- +..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~--P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY--PIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee--ccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 67899999843222 245778999999987543 3233455999999999999999999987 7888764 345
Q ss_pred EE
Q 001060 1106 YI 1107 (1169)
Q Consensus 1106 ~V 1107 (1169)
.|
T Consensus 137 ~v 138 (698)
T KOG2314|consen 137 FV 138 (698)
T ss_pred Ee
Confidence 55
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.028 Score=67.58 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
+...++|+.+ ..|..--+..++-....|..+++.--+.+++|.+.
T Consensus 60 Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 60 AINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQL 104 (556)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHH
Confidence 3444555543 22333222334444445666677777777776654
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=12 Score=45.24 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=28.0
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.+++++|..+-++ +|.-.+.+|+.+|+++.+..++++|.+.|.++
T Consensus 786 ~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3566666544443 32334567777777777777777777776665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=35 Score=43.61 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=21.1
Q ss_pred hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 514 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 514 ~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
.|-+++-+.+++.+|-+..-...++-.++.+-...
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 66677777777777766554445555555544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.18 Score=36.38 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVT 166 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 166 (1169)
.+|..++.++...|++++|.+.|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677777777777777777777777777765
|
... |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.27 Score=53.48 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
.+.|+.++|..+|+.+|...|.++++.++++.|.+..+++-+|..+|-+|+.+. |.+.++....+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis-P~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS-PGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC-CCchHHHhhhh
Confidence 567888888888888888888888888888888888778888888888888876 66655554433
|
|
| >KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.08 Score=55.93 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC--------ccccc----EEEEEECCHHHHHHHHHh-CCCee
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------VVGVC----YAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~--------g~~~g----~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
.-||+++||+.+...-|+++|+.||.|-+|-+. ....+ |.+++ -|.|+|.+...|.++... |+..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 479999999999999999999999999886332 22222 22222 367999999988887766 89999
Q ss_pred eceE
Q 001060 1101 AGRQ 1104 (1169)
Q Consensus 1101 ~g~~ 1104 (1169)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.036 Score=66.63 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=8.7
Q ss_pred HhHHHHHHHHhhh
Q 001060 724 GSYFVGQYYQVLQ 736 (1169)
Q Consensus 724 g~~Fv~~YY~~l~ 736 (1169)
+..++...|+.|.
T Consensus 304 ~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 304 ARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566777777664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.2 Score=35.66 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 133 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~ 133 (1169)
++..++..+.+. |+.++|++.|++++..||+
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 344444444442 3555555555555555554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=7 Score=40.65 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhccCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 374 KVVKLYERCLIACANYPE---YWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e---~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
+.....++....++...- .-+.++..+...+++++|...++.++..- .+ ...+-+.++++..++|.+|+|+++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344445555555543322 33455666667899999999999888532 22 234566689999999999999999
Q ss_pred HHHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 448 YQLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 448 ~~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
+... ..++.. .+-...++++...|+-++|+.-|++|+....
T Consensus 149 L~t~---~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 149 LDTI---KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred Hhcc---ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 8864 133222 2345678999999999999999999999863
|
|
| >KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.15 Score=60.94 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=55.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++||+|+...+..+-++.+...||.|.++. +.. |||++|..+.....|+.. +...++|..+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k---r~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWK---RDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhh---hhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 36899999999999999999999999998643 222 999999999999999977 6788888876553
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.6 Score=50.16 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=105.5
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhCC-HHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH---EARVGS-MDKVV 155 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~---e~~~~~-~e~A~ 155 (1169)
.++.+++....+|+.||.++.+|.-..-.+++....++..=.++.+++|+.+|.|+..|..-=-+ -.+.++ ..+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 57789999999999999999999999999987665568888999999999999999998543222 222222 34556
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhh-----cC---CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINT-----YG---DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 220 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~-----~~---~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~ 220 (1169)
+...+++..++.|...|.+-..++... .| ..+....-+++...++=+|+.....|.. ..|++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhcc
Confidence 788899998999999997765555421 23 2556667788888888788887788876 5555554
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.37 Score=52.46 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=54.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 467 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 467 (1169)
.+.-+.+.|+.++|..+|+.|+.+. |.++.+.+.++.|.+.++++-+|-.+|-++ +.+.|.+.++..++.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A-LtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKA-LTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhhee-eeeCCCchHHHhhhh
Confidence 3334556788888888888888876 788888888888888888888888888887 677888877665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.5 Score=49.06 Aligned_cols=183 Identities=19% Similarity=0.185 Sum_probs=115.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHH---HHHH----HHHH---HcCCHHHHH
Q 001060 376 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH---LFAA----RFKE---QNGDIDGAR 445 (1169)
Q Consensus 376 ~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~---~~~a----~~~e---~~g~~~~A~ 445 (1169)
.-+|.=+|...|- --.++..++--.||-+.++..+.++.+...=..+-.- +.|- .+.- ...+++.|.
T Consensus 177 ~G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 3455566655553 3455555555578999999999998763211112111 1111 1111 355778899
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH-HHHHHHHHHHHhCCHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML-YAQYSRFLHLVSRNAEKARQIL 524 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l-~~~~a~~~~~~~g~~e~Ar~i~ 524 (1169)
+++... .+..|+..-..+..+.++...|++++|+.+|++++..... .+....+ +..++..... ..++++|...|
T Consensus 254 ~lL~~~-~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f 328 (468)
T PF10300_consen 254 ELLEEM-LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMF-QHDWEEAAEYF 328 (468)
T ss_pred HHHHHH-HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHH-HchHHHHHHHH
Confidence 999997 7789998888899999999999999999999999853311 1122222 3334444333 88999999999
Q ss_pred HHHhhhcCCCHHHHHH-HHHhHhhCCCh----hHHHHHHHHHHHHhh
Q 001060 525 VDSLDHVQLSKPLLEA-LIHFESIQSSP----KQIDFLEQLVDKFLM 566 (1169)
Q Consensus 525 ~kAl~~~p~s~~l~~~-~a~~E~~~~~~----~~~~~~r~l~eral~ 566 (1169)
.+.++...-+..++.- .+-....++.. ...+.+..+|.++-.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999988777765541 11122222222 224666777777633
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >TIGR02246 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=91.94 E-value=2 Score=41.56 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
...+..|+..++ .+++.|..+|.++..+....|....|...|.+..+.+....... +.+.....+-..++..++.+.
T Consensus 7 ~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~~~ 86 (128)
T TIGR02246 7 RALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVHAI 86 (128)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEEEE
Confidence 467889999988 59999999999987765345554455555444333333222221 334333333222233333333
Q ss_pred EEEEecCcccc---ceeEEEEEEEeeCCeEEEEcceE
Q 001060 802 GSVKTKEFCRR---RKFVQTFFLAPQEKGYFVLNDIF 835 (1169)
Q Consensus 802 G~~~~~~~~~~---~~F~q~F~L~~~~~~y~v~nDif 835 (1169)
..+...+.... ....-||++...+++|.|..|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~ 123 (128)
T TIGR02246 87 QTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHN 123 (128)
T ss_pred EEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccC
Confidence 33444332111 12344667778889999998865
|
This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown. |
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.36 Score=57.14 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCeeeeeEEee--cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1048 FEIEEEFQNFGRIKPDGVFVR--NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1048 ~~L~~~F~~~G~i~~~~i~~~--~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++.-+++||.|+.|.|... +....-+-|..||+|.+.+++++|.+. .|..|+||.|...+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 456777789999999765322 111223456789999999999999988 79999999987764
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.2 Score=44.27 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
-..++-+.+.++|.+|+..|.++|.+ ..-+.+-++-|+.+-. ++......+.+.|.
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~----------------l~~L~lkEkP~e~eW~--------eLdk~~tpLllNy~ 237 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIIC----------------LRNLQLKEKPGEPEWL--------ELDKMITPLLLNYC 237 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHH----------------HHHHHhccCCCChHHH--------HHHHhhhHHHHhHH
Confidence 33455566778888888888888752 1112222333443321 12222345788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
+++...|++-++++-....+..+ |.+..+++..|+.....=+.++|+.-|.++ ++++|....+..+-
T Consensus 238 QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~v-L~ldpslasvVsrE 304 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKV-LELDPSLASVVSRE 304 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHH-HhcChhhHHHHHHH
Confidence 88888888888888888888777 889999999998888778889999999998 78899876665443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.45 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
.++.++.++.+.|++++|+++|++++..+|.|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57788999999999999999999999999975
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.74 Score=55.84 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=4.7
Q ss_pred HHHHhhhcCCC
Q 001060 524 LVDSLDHVQLS 534 (1169)
Q Consensus 524 ~~kAl~~~p~s 534 (1169)
|-.||-..|.+
T Consensus 311 ~INal~t~p~d 321 (1102)
T KOG1924|consen 311 FINALVTSPSD 321 (1102)
T ss_pred HHHHhcCCHHH
Confidence 44444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.6 Score=52.12 Aligned_cols=131 Identities=20% Similarity=0.133 Sum_probs=79.6
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
.+|++.++...+..-..-.-..+.-.+.+.||+++|-.+.|+.+. .+++..+.+| .+.|+++.|.++.
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV---------TDPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhHHH---HhcCCHHHHHHHH
Confidence 567777666665221111122567888899999999777765332 3455555544 4789999998764
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 449 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 449 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
+. -++...|.++++...+.|+++-|+.+|.++-... .+ -|++...|+.+.-+++.+.|.
T Consensus 342 ~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~----------~L-----~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 342 KE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS----------GL-----LLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp CC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH----------HH-----HHHHHHCT-HHHHHHHHHHHH
T ss_pred Hh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc----------cc-----HHHHHHhCCHHHHHHHHHHHH
Confidence 43 2367799999999999999999999998764443 12 123345888888888887776
Q ss_pred hhcC
Q 001060 529 DHVQ 532 (1169)
Q Consensus 529 ~~~p 532 (1169)
+..-
T Consensus 401 ~~~~ 404 (443)
T PF04053_consen 401 ERGD 404 (443)
T ss_dssp HTT-
T ss_pred HccC
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.31 Score=51.77 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=61.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C----CCeeeceEEEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S----PIQLAGRQVYIE 1108 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~----~~~i~g~~l~V~ 1108 (1169)
..|||.||...++-+.|.+.|+.||+|...-+.+.++ ++..+=++|+|...-.+.+|+.. + +.+..++.+-|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r--~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR--GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc--ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6799999999999999999999999998864444443 56777889999999999999876 2 456667777777
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
...
T Consensus 110 P~e 112 (275)
T KOG0115|consen 110 PME 112 (275)
T ss_pred hhh
Confidence 654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.07 E-value=50 Score=41.29 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001060 140 KYADHEARVGSMDKVVEVYERAVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217 (1169)
Q Consensus 140 ~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e 217 (1169)
.-++|.++.+.|++|.++-+......|. =.++|..|+..++ ..+++++|-...-+.+. . ....|.....-.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl-~~~~y~~Aas~~p~m~g---n---~~~eWe~~V~~f 433 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLL-FEGKYDEAASLCPKMLG---N---NAAEWELWVFKF 433 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHH-hcchHHHHHhhhHHHhc---c---hHHHHHHHHHHh
Confidence 4577889999999999876554443332 3578999999998 78888888777666654 2 345677766654
Q ss_pred HHhhh
Q 001060 218 YMQQE 222 (1169)
Q Consensus 218 ~~~~~ 222 (1169)
...++
T Consensus 434 ~e~~~ 438 (846)
T KOG2066|consen 434 AELDQ 438 (846)
T ss_pred ccccc
Confidence 44443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.19 Score=55.93 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i 482 (1169)
.|.+++|+..|.++|++. |....+|-..+.+..+.++...|+.-|..+ ++++|+...-|......++-+|+++++...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccchhhHHHHHhhchHHHHHH
Confidence 466777777777777665 555666666666666666666666666666 566776666666666666666777777777
Q ss_pred HHHHHHhh
Q 001060 483 YEQAIAIE 490 (1169)
Q Consensus 483 y~~Al~~~ 490 (1169)
+..++++.
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 66666654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.03 E-value=8.1 Score=43.26 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.+.-|.+.++|..|+..|-++|+. +.-|+. +.-++.+-+....-.|++-+++.-..++|...|.|...+++-+.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~-----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKK-----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhh-----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 356677888888899999888872 333332 33445555555555677888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHh
Q 001060 399 CMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
++.....+++|.+.++..+++.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 8888777888877777776654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.03 E-value=46 Score=40.81 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHH----------HHHHHHhCCHHH
Q 001060 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG--YWKKY----------ADHEARVGSMDK 153 (1169)
Q Consensus 86 ~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~--~W~~~----------a~~e~~~~~~e~ 153 (1169)
+...+.++.||+ ...|..|++...+. -.++-|..+|-+ .-+-.+ +-+.+ +++-.-.|.|++
T Consensus 680 edA~qfiEdnPH-prLWrllAe~Al~K--l~l~tAE~AFVr----c~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 680 EDAIQFIEDNPH-PRLWRLLAEYALFK--LALDTAEHAFVR----CGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HHHHHHHhcCCc-hHHHHHHHHHHHHH--HhhhhHhhhhhh----hccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 334566888887 78999999986652 234444433332 222222 22222 222333478999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHhhhHHHHHHHH
Q 001060 154 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL---SFPLWDKYIEYEYMQQEWSRVAMIY 230 (1169)
Q Consensus 154 A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~---s~~lw~~y~~~e~~~~~~~~a~~iY 230 (1169)
|+++|-.+=... .-++|.+.+ |+.-.+.+++..+ |.|.. -...|............|+.|++.|
T Consensus 753 aek~yld~drrD-LAielr~kl--------gDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 753 AEKLYLDADRRD-LAIELRKKL--------GDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hhhhhhccchhh-hhHHHHHhh--------hhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996654432 233443333 4443344444322 11221 2456777776666677888888888
Q ss_pred HHH
Q 001060 231 TRI 233 (1169)
Q Consensus 231 ~r~ 233 (1169)
...
T Consensus 820 ~~~ 822 (1189)
T KOG2041|consen 820 SYC 822 (1189)
T ss_pred Hhc
Confidence 665
|
|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.94 E-value=5.6 Score=48.01 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=58.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.+.+-+++.+++.+..|++++|-.. .|..+++ ..++..+...|-++|+|....++++|+..+...+-.|.+.|....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l-~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDL-SENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccch-hhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 34667788999999999999999632 2334333 223332333578999999999999999998888888988886654
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 388 ~ 388 (944)
T KOG4307|consen 388 N 388 (944)
T ss_pred c
Confidence 3
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.37 Score=35.57 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
.|..++.++.+.|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3778899999999999999999996654
|
|
| >PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.4 Score=41.98 Aligned_cols=109 Identities=8% Similarity=0.095 Sum_probs=65.0
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcC-CcccchhhHHHHHHHHhcCCCccee--EeeeeccccCCCceEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVISLNFTAIE--IKTINSLGSWNGGVLVMV 800 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g-~~~~~~~~~~~I~~~~~~l~~~~~~--i~~~d~q~~~~~~ilv~v 800 (1169)
..++++|++.+. .+.+.|..+|.++.+++.... ....|...+.+..+.... .+..+. +..+..+. .++.+++..
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~-~~~~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFE-SFRPISIEFEDVQVSV-SGDVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHH-THSEEEEEEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhh-hCceEEEEEEEEEEEE-CCCEEEEEE
Confidence 367899998887 677999999998765553222 222455554433333222 123443 44444444 233445555
Q ss_pred EEEEEe--cCccccceeEEEEEEEeeCCeEEEEcceE
Q 001060 801 SGSVKT--KEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835 (1169)
Q Consensus 801 ~G~~~~--~~~~~~~~F~q~F~L~~~~~~y~v~nDif 835 (1169)
.+.+.. ++......+..||+|...+++|.|...-+
T Consensus 80 ~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~ 116 (121)
T PF13474_consen 80 EFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHW 116 (121)
T ss_dssp EEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEe
Confidence 555543 33333567899999999999999987554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.58 Score=33.66 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
++|+.++.++...|++++|...|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666666666666666666666666554
|
... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.65 Score=51.80 Aligned_cols=117 Identities=13% Similarity=-0.004 Sum_probs=86.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHH--HHHHHHHHHhhcCCHHH
Q 001060 111 KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI--WLHYCIFAINTYGDPET 188 (1169)
Q Consensus 111 ~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~l--w~~y~~~~~~~~~~~e~ 188 (1169)
.+.+|.+++|+..|.+++.+.|.+..++.+-+..++++++...|+.=|..++.+.|++..- |..|+.- .+++.++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r---llg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER---LLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH---HhhchHH
Confidence 3346789999999999999999999999999999999999999999999999998876543 5555554 4588999
Q ss_pred HHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 189 IRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 189 Ar~~~erAl~~~g~d~~s-~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
+++.|+.+++ .|+.. ..-|..-.. -..+.++.=++.|.|.++
T Consensus 201 aa~dl~~a~k---ld~dE~~~a~lKeV~--p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACK---LDYDEANSATLKEVF--PNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHh---ccccHHHHHHHHHhc--cchhhhhhchhHHHHHHH
Confidence 9999999998 44432 223332221 222445555556666554
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.41 Score=55.77 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=61.2
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i 482 (1169)
-++++.|...|.+||++. |++..++-..+....+.+++..|+.=+.++ ++++|.....|++.+....+++.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~ka-ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKA-IELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhh-hhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 345666777777777665 666666666666666666777776666666 667777777777777777777777777777
Q ss_pred HHHHHHhhhC
Q 001060 483 YEQAIAIEKG 492 (1169)
Q Consensus 483 y~~Al~~~~~ 492 (1169)
|+......|+
T Consensus 95 l~~~~~l~Pn 104 (476)
T KOG0376|consen 95 LEKVKKLAPN 104 (476)
T ss_pred HHHhhhcCcC
Confidence 7777777654
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.51 E-value=12 Score=44.72 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=98.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh----c----------------cChHHHH---HHHHHHHHcC
Q 001060 383 LIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----K----------------RLPEIHL---FAARFKEQNG 439 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~----p----------------~~~~l~~---~~a~~~e~~g 439 (1169)
|+..|.+.+-.+.++.+...+|+.+.|..+++|++=.+. | .+..+|+ .+...+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 334588999999999999999999999999888875332 1 1222322 2455667788
Q ss_pred CHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC--
Q 001060 440 DIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-- 515 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e-~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g-- 515 (1169)
=+.-|.+.++-+ ..++|. ++-..+..++++ .|..+|.=.+.+++..-....- ...++. .+-..+|+|+....-
T Consensus 357 C~rTA~E~cKll-lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l-~~~PN~-~yS~AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 357 CWRTALEWCKLL-LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL-SQLPNF-GYSLALARFFLRKNEED 433 (665)
T ss_pred ChHHHHHHHHHH-hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH-hhcCCc-hHHHHHHHHHHhcCChh
Confidence 888899988876 788998 776666666654 4556676666666655222210 001111 123566777655222
Q ss_pred CHHHHHHHHHHHhhhcCC
Q 001060 516 NAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~p~ 533 (1169)
+...|+..+.+|+++.|.
T Consensus 434 ~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHPL 451 (665)
T ss_pred hHHHHHHHHHHHHHhCcH
Confidence 268899999999999984
|
|
| >KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.46 Score=53.12 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=57.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEe--ecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~--~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
..|-|.||.+.+|.++++.+|...|.|..+.+.- .+..-....-.|||.|.|..++..|-.+..+.|-|+-|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 4789999999999999999999999999876532 11111123347999999999999888776677777776664
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.8 Score=43.46 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE--AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~--~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~ 505 (1169)
-+.+|..+...+++++|...++.++....-.++. +-++++.+...+|.+|+|..+++..-... -.+.+...
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-------w~~~~~el 164 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-------WAAIVAEL 164 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-------HHHHHHHH
Confidence 3456677778899999999999863221122222 35778888888999999988876433221 11334445
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 506 YSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 506 ~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
-++++.. .|+-++||.-|++|++..+.
T Consensus 165 rGDill~-kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 165 RGDILLA-KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hhhHHHH-cCchHHHHHHHHHHHHccCC
Confidence 6777776 99999999999999998743
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.44 Score=55.48 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=88.4
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
..++++.|+.+|-++|...|++..+|-.-+..+.+.+++..|+.-+.+|++.. |.....|+..|......+.+.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHH
Confidence 45688999999999999999999999999888889999999999999999987 88888999999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHH
Q 001060 448 YQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
|++. ..+.|+...+-......
T Consensus 95 l~~~-~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 95 LEKV-KKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHh-hhcCcCcHHHHHHHHHH
Confidence 9997 78899988776555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=42 Score=39.89 Aligned_cols=192 Identities=14% Similarity=-0.011 Sum_probs=109.4
Q ss_pred HHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 337 ~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
|-.+|- -++-.|++...+ ..+++..-.+-...-+..+..+.|.. ..+-..++.++++|... .-+.-..+.+|.
T Consensus 52 yisg~~--~~s~~~l~d~~l---~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ 124 (711)
T COG1747 52 YISGII--SLSKQLLDDSCL---VTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERL 124 (711)
T ss_pred HHHHHH--HhhhccccchHH---HHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHH
Confidence 444443 355566664433 33344333333344566677777755 34445666777777655 445566788887
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
++.+ =++..+--.++..+++ ++...+...|.++.-...| .--++|-++..+- -.+.+....+..+.-....
T Consensus 125 ve~d-fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg 200 (711)
T COG1747 125 VEYD-FNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG 200 (711)
T ss_pred HHhc-chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc
Confidence 7765 5566666677777777 7777888888887544444 2334566555432 3455665555555444332
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 492 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 492 ~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
.....+..+...-.|....++.+|..|+.-.|+++-.+.......+.+
T Consensus 201 -----~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 201 -----EGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred -----cchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 122333333333333435578888888888888776554444444433
|
|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.89 E-value=3 Score=46.59 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=61.9
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++.-+-|-+|... ++-+.|-.+|-.||.|.+|+. ++.+ .|-|.|+..|..++++||.. ++..+-|.+|.|..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkF-mkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKF-MKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEE-eecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 5688899999864 677889999999999999764 4333 36899999999999999987 78888888889887
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
.+.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 664
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.4 Score=48.00 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCCHHHH----------------HHHHHHHHHhCCHHHHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAF-LAEFPLCYGYW----------------KKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~-l~~~P~~~~~W----------------~~~a~~e~~~~~~e~A~~l~e 159 (1169)
.|+.-|..+++-.... ...|++++++.... =..+|...-.| .+.+..+...|.+.+|+.+.+
T Consensus 225 ~Dv~e~es~~rqi~~i-nltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~q 303 (361)
T COG3947 225 YDVQEYESLARQIEAI-NLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQ 303 (361)
T ss_pred ccHHHHHHHhhhhhcc-ccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4788888888876654 25666666555444 23455555444 234556777788888888888
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 196 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erA 196 (1169)
|++..+|.+...|+.+...+. ..||-=.+.+.|+|.
T Consensus 304 r~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 304 RALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred HHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 888888888888888888877 677755555555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.55 E-value=15 Score=38.72 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 517 (1169)
.|+ +.|+..|-++...-.=+.+++.+.+|.++.+. +.++++.+|-+++++....+ ...|+++..++.+.+. .|++
T Consensus 120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~-~~~~ 194 (203)
T PF11207_consen 120 FGD-QEALRRFLQLEGTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK-LKNY 194 (203)
T ss_pred cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH-hcch
Confidence 344 67888777752222224688899999998755 78999999999999876542 3458899999999877 8988
Q ss_pred HHHH
Q 001060 518 EKAR 521 (1169)
Q Consensus 518 e~Ar 521 (1169)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.25 E-value=53 Score=38.81 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=88.2
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHH-cCCHHHHHHHHHHHhh--hcCCChHH----H
Q 001060 394 IRYVLCMEASG--SMDLAHNALARATHVFVKR--LPEIHLFAARFKEQ-NGDIDGARAAYQLVHT--ETSPGLLE----A 462 (1169)
Q Consensus 394 ~~~a~~l~~~g--~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~--~~~P~~~~----~ 462 (1169)
.-+|..+..++ ++..++++++-.+..-++. ....++.+|.++.. ..+++-|+..+++++. +..|...+ .
T Consensus 11 lGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a 90 (629)
T KOG2300|consen 11 LGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA 90 (629)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Confidence 34566666666 6677777777666543332 23466777777665 5788889998888743 33555533 4
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 463 IIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 463 ~~~~a~~e~r~g-~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+..++.++.... .+..++.++++||++..+. +.-.-.+..+++.+... .+|+..|.+++.-+.+.
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~--p~wsckllfQLaql~~i-dkD~~sA~elLavga~s 156 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSV--PYWSCKLLFQLAQLHII-DKDFPSALELLAVGAES 156 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHhh-hccchhHHHHHhccccc
Confidence 566667776666 7889999999999987532 11112355677777544 88999999987665554
|
|
| >KOG1996 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.98 Score=48.65 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1048 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1048 ~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++...++||.|..|-|+......-.-----||+|+..+++.+|+-. ||..|+||.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 466777889999999866554322111223569999999999999866 89999999887644
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.8 Score=33.74 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
.|..++.++.+.|++++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36778999999999999999999977654
|
|
| >PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.5 Score=35.37 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=40.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcC----CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNF----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~----G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
..|+|+|+. +++.++|+.+|..| ++. +|. ++ +.. .|=|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IE-WI-dDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIE-WI-DDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEE-Ee-cCC------cEEEEECCHHHHHHHHHc
Confidence 579999996 68888999999988 543 333 34 432 578999999999999864
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.53 E-value=0.74 Score=48.46 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=48.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 423 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~ 423 (1169)
.+.+|.+-+..+|.++|...|....-|++++.+.++.|+++.|...|+..+++.+++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 356788888889999999999989999999999899999999999999988887544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.52 E-value=6.2 Score=41.04 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
.|..+|.++.+.|++++|++.|.++ .+.... -.++++..+.+..-.+++..+...+.++-.....-.+......+-
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4445555555555555555555554 221111 234455555555556666666666666655432211111111122
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 504 AQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 504 ~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
..-+-... ..+++.+|-+.|-.++..+.
T Consensus 117 ~~~gL~~l-~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANL-AQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHH-HhchHHHHHHHHHccCcCCC
Confidence 22222222 37788888888877765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.37 E-value=30 Score=40.42 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=93.5
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------cCCHHH---HHHHHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------------------------ANYPEY---WIRYVLCMEA 402 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~--------------------------~~~~e~---W~~~a~~l~~ 402 (1169)
.|-.++....+.+.+..+||...|..+.||||-.+ +.+-.+ -++++..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 55667888888888889999876666666665433 122234 4466677778
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHH-HHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCH-
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARF-KEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL- 476 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~-~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~- 476 (1169)
.|-+..|.++.+-.+.+.+.++|.--+.+.++ ..+.++++=-..+++......... .+.+-+..+.....+++.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 89999999999888888754366544444443 456778877777777642211111 122445556666667776
Q ss_pred --------------HHHHHHHHHHHHhhh
Q 001060 477 --------------EDAFSLYEQAIAIEK 491 (1169)
Q Consensus 477 --------------e~A~~iy~~Al~~~~ 491 (1169)
++|...+.+|+..+|
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHHhH
Confidence 899999999999985
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.54 Score=58.10 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=61.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
..+.++|++|+.++....|...|..||.|..|++ +. +--|++|.|++...++.|+.. .|.-|+| ++++|.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec--cc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 5689999999999999999999999999997543 21 235999999999999999976 6888886 568888
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
++.
T Consensus 527 la~ 529 (975)
T KOG0112|consen 527 LAS 529 (975)
T ss_pred ccc
Confidence 765
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.25 E-value=30 Score=37.60 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 115 DNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
...++|.+-|.+.|++.+... .+.+..+.+..+++++++..+.|.++|..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 478889999999999998864 34466777888999999999988887754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.17 E-value=94 Score=39.22 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHh---hcCCH
Q 001060 116 NIVKIRRVYDAFLAEFPLC----YGYWKKYADHEA-RVGSMDKVVEVYERAVQGVTY-SVDIWLHYCIFAIN---TYGDP 186 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~----~~~W~~~a~~e~-~~~~~e~A~~l~eraL~~~P~-s~~lw~~y~~~~~~---~~~~~ 186 (1169)
-|..|+++++.++..++.. ....+.|+.++. ...+++.|+..++|++.+.-. +..=+...+.+++- ...++
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 3556788999999766665 356788888877 668999999999999877622 11111222333221 12344
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHhcch
Q 001060 187 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM-----QQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 187 e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~-----~~~~~~a~~iY~r~L~~p~ 238 (1169)
..|....+++++..... ....|...++|..- .++...|...++.+.....
T Consensus 116 ~~a~~~l~~~I~~~~~~--~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 116 KAALKNLDKAIEDSETY--GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 45999999999876542 33456666666522 2578889999999988753
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.15 E-value=14 Score=44.34 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
-...+.|+++.|-.+.| |.. ..+++.-+.++. +.|+++.|.++... -+++..|-.++....++
T Consensus 298 ~~~i~~fL~~~G~~e~A-------L~~-~~D~~~rFeLAl---~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELA-------LQF-VTDPDHRFELAL---QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHH-------HHH-SS-HHHHHHHHH---HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHH-------Hhh-cCChHHHhHHHH---hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 55667788888865554 433 445676666664 67999888755421 24778999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
|+++-|.++|.++ .. |-.+..++.-.|+.+....+.+.|..... +-..+.-+ + ..|+++
T Consensus 361 g~~~lAe~c~~k~-~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----------~n~af~~~-~-~lgd~~ 419 (443)
T PF04053_consen 361 GNIELAEECYQKA-KD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD----------INIAFQAA-L-LLGDVE 419 (443)
T ss_dssp TBHHHHHHHHHHC-T---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----------HHHHHHHH-H-HHT-HH
T ss_pred CCHHHHHHHHHhh-cC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----------HHHHHHHH-H-HcCCHH
Confidence 9999999999996 21 34455566678999888888887776542 11122112 1 278899
Q ss_pred HHHHHHHHH
Q 001060 519 KARQILVDS 527 (1169)
Q Consensus 519 ~Ar~i~~kA 527 (1169)
+..+++.++
T Consensus 420 ~cv~lL~~~ 428 (443)
T PF04053_consen 420 ECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=86.91 E-value=7.1 Score=41.94 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 460 LEAIIKHANMERRLGNL-------EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~-------e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
..++++.+.+++.+++. ..|...|+++++.............+....+.+.++ .|++++|.+.|.+.+....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCC
Confidence 44677777888777774 456666666665543211111223345556777666 9999999999999998654
Q ss_pred CCH
Q 001060 533 LSK 535 (1169)
Q Consensus 533 ~s~ 535 (1169)
.+.
T Consensus 197 ~s~ 199 (214)
T PF09986_consen 197 ASK 199 (214)
T ss_pred CCC
Confidence 443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.1 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
..|..++..+...+++++|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777777777777888888888777776553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.36 E-value=6.6 Score=35.84 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 121 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 121 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
...+++.++.+|++....+.++..++..|+++.|.+.+-.+++.++..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999999999999999999999999987643
|
|
| >KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.73 E-value=0.7 Score=52.04 Aligned_cols=71 Identities=28% Similarity=0.448 Sum_probs=54.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCeeeceEEEEEeccC
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~-~~~i~g~~l~V~~~r~ 1112 (1169)
.+|++||.+.++.++|+.+|...-.--+..+++. .||+||...+..-+.+|++. + ..++.|+++.|+..-+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5899999999999999999964311111113331 27999999999999999988 4 5788999999986543
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.26 E-value=29 Score=41.79 Aligned_cols=142 Identities=12% Similarity=0.030 Sum_probs=90.4
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------------------hcCCChHH---HHHHHHHHHHHcCCHHH
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHT--------------------ETSPGLLE---AIIKHANMERRLGNLED 478 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--------------------~~~P~~~~---~~~~~a~~e~r~g~~e~ 478 (1169)
|-...-.++.+.+...+|+.+.|..+.++++- =+.|.+-. +.++++..+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 44567788889999999999888887776410 11233332 35677778888999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----hhhcCCCHHHHHHHHHhHhhCCChhH
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS-----LDHVQLSKPLLEALIHFESIQSSPKQ 553 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA-----l~~~p~s~~l~~~~a~~E~~~~~~~~ 553 (1169)
|....+-.+.+.|.++ |.....+++++.....+|.=-+.+++.. |...|+ ..+=.++++|-....++..
T Consensus 361 A~E~cKlllsLdp~eD-----Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSED-----PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDD 434 (665)
T ss_pred HHHHHHHHhhcCCcCC-----chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhh
Confidence 9999999999987532 3333344444444355566555555554 223343 2333467777776655433
Q ss_pred HHHHHHHHHHHhhcCC
Q 001060 554 IDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 554 ~~~~r~l~eral~~~~ 569 (1169)
...++.++.+|+...|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4556677777776655
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.1 Score=47.23 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 459 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~ 459 (1169)
+.+.++.+.|.++|.+|+.+. |....-|+.++.+.++.|+++.|.+.|++. ++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~-L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEV-LELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHH-HcCCccc
Confidence 344566666667777777655 666666777777777777777777777765 5666654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.74 E-value=1.3e+02 Score=38.54 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----ccCCHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIR 395 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~----~~~~~e~W~~ 395 (1169)
+..+-...++.+.+...-+.++.. .++. ..-...-..........-.|++++|+.+..++.+. +..+.++|..
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~-L~~~--~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQ-LPEA--AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-cccc--cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 333334445666777666666652 0000 00111122222233334569999999998888877 5566788888
Q ss_pred H--HHHHHHcCC--hHHHHHHHHHHHHHhhccChH---HHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCChHHH--
Q 001060 396 Y--VLCMEASGS--MDLAHNALARATHVFVKRLPE---IHLFAARFKEQ----NGDIDGARAAYQLVHTETSPGLLEA-- 462 (1169)
Q Consensus 396 ~--a~~l~~~g~--~e~A~~vl~rAl~~~~p~~~~---l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P~~~~~-- 462 (1169)
+ +.+++.+|+ +.+....|.+.-..+.+..+. +....+.++.. .+...+++.-++-. ....|.....
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~-~~~~~~~~~~~~ 619 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVG-SVYTPQPLLSRL 619 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhh-hhcccchhHHHH
Confidence 7 456777883 233334444443333332222 22222222222 23334444444433 2223333333
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH-HHHHhCCHHHHHHHHHH
Q 001060 463 -IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF-LHLVSRNAEKARQILVD 526 (1169)
Q Consensus 463 -~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~-~~~~~g~~e~Ar~i~~k 526 (1169)
.+.++.++...|++++|...+.+......... ...+.........+ ++...|+...|.....+
T Consensus 620 ~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 620 ALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 34678889999999999999988877654321 11111122222222 23457899998888877
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.07 E-value=2.6e+02 Score=41.51 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHH----HHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHH
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFA----ARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIK 465 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~----a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~ 465 (1169)
.++|.+..++|-.+.+...+.+...+ |+ -.++...+ -..+...+.+..++++.+..-+.-.++ ..+.+..
T Consensus 2740 n~fakvArkh~l~~vcl~~L~~iytl--p~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2740 NRFAKVARKHGLPDVCLNQLAKIYTL--PNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 35556666677777777777666543 21 11111111 111111234445555555432221222 2345777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---C-CHH---HHHHHHHHHhhhcCC--CHH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---R-NAE---KARQILVDSLDHVQL--SKP 536 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~---g-~~e---~Ar~i~~kAl~~~p~--s~~ 536 (1169)
.+.|..++|+.++|...|..|+++.. ..+..|..|+.++.... . ++. .|...|-+|....-. +..
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~------~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDD------GLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 88999999999999999999999984 23778999988876642 1 233 445545555554322 234
Q ss_pred HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH---HhhCCHHHHHHHHHHHHhhhCC
Q 001060 537 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL---GLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 537 l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe---~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
++-...++..-.... .-+-+.|++.+..-|- -.|--|+--+ ..+++-..+.-+..++.+.+|-
T Consensus 2892 ~iakvLwLls~dda~---~~l~~~~~k~l~~ip~-----------~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQ 2957 (3550)
T KOG0889|consen 2892 LIAKVLWLLSFDDSL---GTLGDVFDKFLGEIPV-----------WNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQ 2957 (3550)
T ss_pred HHHHHHHHHHhcccc---chHHHHHHHhhccCCc-----------hhhhhhhHHHHhhccccchhHHHHHHHHHHHhchH
Confidence 444444443332221 1245667777665431 1344444332 2356778888888888888764
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.66 E-value=4.4 Score=45.21 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=68.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
-+..+.+..++..|+..|.++|....++ +..+|...|....-.|++-.|+.=+.++ +.++|.+...+++-+.+...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhhhhHHHHH
Confidence 3444555566777777777777654332 3345666666666778888888888887 78899999999999988888
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 001060 473 LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~ 490 (1169)
+..++.|....+..+...
T Consensus 166 Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 888888887777766554
|
|
| >KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=83.50 E-value=3.1 Score=49.33 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=58.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i---~g~~l~ 1106 (1169)
.++.|||.||---.|.-+|+.++. .+|.|... +| |+ -|..|||.|.+.++|.+.+.+ +|+.. |++.|.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 468899999998899999999998 67777763 44 32 456899999999999988877 67654 567788
Q ss_pred EEecc
Q 001060 1107 IEERR 1111 (1169)
Q Consensus 1107 V~~~r 1111 (1169)
|++.+
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=8.1 Score=42.99 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=48.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 365 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 365 ~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.+.+++++|+..-+++|...|.++.-|...|.++.+.|-+..|+.-|+.-++.+ |+.+.+-+....+.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-P~dp~a~~ik~ql~ 259 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-PEDPISEMIRAQIH 259 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCchhHHHHHHHHH
Confidence 33566777777777777777777777777777777777777777777777777766 66666555554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.51 E-value=8.3 Score=42.88 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 199 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~ 199 (1169)
...++++.+...+.++.+++.+++.+..+|.+..+|...+..+. ..|+...|+..|++.-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 34566777777889999999999999999999999999999999 899999999999987663
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.18 E-value=8.7 Score=44.95 Aligned_cols=119 Identities=12% Similarity=-0.068 Sum_probs=86.1
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-AN--------YPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~~--------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
+.............++--.|++.+|++++.+.=+.+ +- .--+|..++.++.+.+.+..+..+|.+|++...
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 333444445555667777899999998877643332 11 223788999988888999999999999986221
Q ss_pred -----------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 422 -----------------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 422 -----------------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+..+|.+..+..+...|+.-.|.++|.++ +...-.++.+|++++...
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a-v~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA-VHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH-HHHHhcCcHHHHHHHHHH
Confidence 135577888888888889999999999988 666777788899888754
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.15 E-value=0.33 Score=59.83 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=55.3
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
...++||+|||+..+++.+|+..|..+|.|.+|+|..... +..-.||||.|.+...+-.|... .+..|+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhhcCCccc
Confidence 3568999999999999999999999999999988654433 34456999999999888887754 444444
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.85 E-value=2 Score=50.37 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.8
Q ss_pred eEEEEcc
Q 001060 827 GYFVLND 833 (1169)
Q Consensus 827 ~y~v~nD 833 (1169)
||++.||
T Consensus 98 G~lt~~~ 104 (419)
T KOG0116|consen 98 GYLTNKD 104 (419)
T ss_pred EEEEeCC
Confidence 5555555
|
|
| >PF15023 DUF4523: Protein of unknown function (DUF4523) | Back alignment and domain information |
|---|
Probab=81.65 E-value=5.2 Score=38.95 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCCceEEEEecCCCCCCH-HHHH---HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEE
Q 001060 1030 EGEVKSVYVRNLPSTVTA-FEIE---EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~-~~L~---~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l 1105 (1169)
|.+-.+|.|+-|..++.. +||+ ..++.||+|.+|+. . ++--|.|.|.|..+|=+|+.+-+....|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--C------GRQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--c------CCceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 456678889877666533 4454 44578999999653 2 2347999999999999999885455566666
Q ss_pred EEEe
Q 001060 1106 YIEE 1109 (1169)
Q Consensus 1106 ~V~~ 1109 (1169)
.+.+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 6654
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=81.43 E-value=10 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=10.9
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRI 1060 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i 1060 (1169)
..|+.-++|.+ +..+....|..
T Consensus 315 ~~VI~~~~P~~-----~~~yvqR~GRa 336 (456)
T PRK10590 315 PHVVNYELPNV-----PEDYVHRIGRT 336 (456)
T ss_pred CEEEEeCCCCC-----HHHhhhhcccc
Confidence 45555556543 23444555654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.11 E-value=1e+02 Score=34.63 Aligned_cols=128 Identities=15% Similarity=0.049 Sum_probs=64.8
Q ss_pred HHcCCHHHHHHHHHHHhh---hcCCCh----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh----hCCCccCchHHHH
Q 001060 436 EQNGDIDGARAAYQLVHT---ETSPGL----LEAIIKHANMERRLG-NLEDAFSLYEQAIAIE----KGKEHSQTLPMLY 503 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~---~~~P~~----~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~----~~~~~~~~~~~l~ 503 (1169)
++.|+++.|..+|.|+-. .+.|+. ..+++..+.-....+ +++.|...+++|+++. ......+...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 344555555555555411 123332 224555555556666 7888888888887763 2111122222333
Q ss_pred ----HHHHHHHHHHhC---CHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 504 ----AQYSRFLHLVSR---NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 504 ----~~~a~~~~~~~g---~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..++..+.. .+ ..++|.++++.+-...|+...++.-.+.+-...++ .+.+...+.+++..
T Consensus 84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~---~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD---EEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC---hhHHHHHHHHHHHh
Confidence 233333322 22 35667777777766778766666333333333332 34455566666654
|
It is also involved in sporulation []. |
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.05 E-value=3.3e+02 Score=40.57 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=83.1
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-h---HHHHHHHHHHHHHhhccC
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS----GS-M---DLAHNALARATHVFVKRL 424 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~----g~-~---e~A~~vl~rAl~~~~p~~ 424 (1169)
....+....-+.|.++.|+.+.|-+.|-.|+..+-.....|..++.|+... .. . ..|..+|-+|+.......
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~sk 2888 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSK 2888 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchh
Confidence 344556666688889999999999999999999999999999999988763 11 2 345666767766542223
Q ss_pred hHHHHHHHHHHHHcCCHH-HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 425 PEIHLFAARFKEQNGDID-GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~-~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..=++....++....+-. ..-+++++-+.++.+-+.-.|+-......+.++-+-++.++.+.-+..|
T Consensus 2889 aRk~iakvLwLls~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yP 2956 (3550)
T KOG0889|consen 2889 ARKLIAKVLWLLSFDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYP 2956 (3550)
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhch
Confidence 333333333332222111 1224444443444443333344433444455666667777666665553
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.96 E-value=22 Score=46.43 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=85.9
Q ss_pred HHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-----
Q 001060 92 VKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV----- 165 (1169)
Q Consensus 92 l~~nP~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~----- 165 (1169)
...+|.-...|..|+..++... .+.+.+-++..+.++.-+|.... +....+.+++||+...
T Consensus 8 ~~~~~~~~n~eq~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~-------------~~~~l~~~lerc~~~~~~lk~ 74 (974)
T KOG1166|consen 8 EQQNPTPLNYEQRLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKE-------------NQSLLRNLLERCLEELEDLKR 74 (974)
T ss_pred hhccCcHHHHHHHHHHHHHhhcCCCchhhhHhHhhhhhhccccCCc-------------hhhhHHHHHHHHHHhccchhh
Confidence 4566666777777777766211 13334444444444444444322 1445566666666544
Q ss_pred -CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhH
Q 001060 166 -TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQL 241 (1169)
Q Consensus 166 -P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~ 241 (1169)
..+..+...|+.+. ......+++.+|..+.. .|.-.....++..|..+++..+.+.+|..+|+.+++. |...+
T Consensus 75 Y~nD~Rfl~~~~~~~--~~e~~~d~~d~f~~m~~-kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL 151 (974)
T KOG1166|consen 75 YRNDPRFLILWCSLE--LREELQDAEDFFSYLEN-KGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERL 151 (974)
T ss_pred ccccHHHHHHHHhHH--HHHHHhhHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 33455444444321 22346677778877765 3333335688999999999999999999999999987 66655
Q ss_pred HHHHHHH
Q 001060 242 DRYFSSF 248 (1169)
Q Consensus 242 ~~~~~~~ 248 (1169)
.+.+..|
T Consensus 152 ~~~~~~F 158 (974)
T KOG1166|consen 152 LRQYSNF 158 (974)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A | Back alignment and domain information |
|---|
Probab=80.43 E-value=7 Score=36.01 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC--CcceeEeeeeccccCCCceEEEEEE
Q 001060 726 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGVLVMVSG 802 (1169)
Q Consensus 726 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~--~~~~~i~~~d~q~~~~~~ilv~v~G 802 (1169)
+.+++|...++ .+++.|.++|.++..+++.+|... +.+++.+.+..-. ....++..+..+.. ++..++....
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~~ 77 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTIL----GKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEE----EHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEe----CHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEEE
Confidence 46788888776 569999999999877775444332 3444455555422 22344555555555 4445555555
Q ss_pred EEEecCcc--ccceeEEEEEEEeeCCeEEE
Q 001060 803 SVKTKEFC--RRRKFVQTFFLAPQEKGYFV 830 (1169)
Q Consensus 803 ~~~~~~~~--~~~~F~q~F~L~~~~~~y~v 830 (1169)
.++..... ....+.-+.++..++++|-|
T Consensus 78 ~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 55554322 12445666666667888865
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.37 E-value=1.4e+02 Score=36.00 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~-~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
++..+.+.+++|+-..|..+|..+++... .+......|..+..+|-+++...|.+++++..+.+|.+...+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 55667788899999999999998885432 222344557777888888888455599999999999876643
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.20 E-value=26 Score=40.67 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHh-h---------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--C
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEK-L---------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--S 150 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~-~---------~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~--~ 150 (1169)
-.++.-.+.++.||.-+..|..=-..++. + .+.-++.-.++...+|..+|+++.+|....-+..++. +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 34555667889999999888721111111 0 0123455677788899999999999999888888776 3
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 001060 151 MDKVVEVYERAVQGVTYSVDIWLHYCIFAIN 181 (1169)
Q Consensus 151 ~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~ 181 (1169)
+.+=..+++++|+..|.|...| +|=+|+.+
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~ 156 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAW-HYRRFVVE 156 (421)
T ss_pred HHHHHHHHHHHHhcCcccccch-HHHHHHHH
Confidence 6788889999999999999999 56677764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1169 | ||||
| 3q90_A | 140 | Crystal Structure Of The Ntf2 Domain Of Ras Gtpase- | 5e-14 | ||
| 2ooe_A | 530 | Crystal Structure Of Hat Domain Of Murine Cstf-77 L | 4e-10 | ||
| 3ujm_A | 120 | Crystal Structure Of The Ntf2-Like Domain Of The Dr | 4e-10 | ||
| 1zo2_A | 129 | Structure Of Nuclear Transport Factor 2 (Ntf2) From | 5e-04 |
| >pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras Gtpase-Activating Protein- Binding Protein 1 Length = 140 | Back alignment and structure |
|
| >pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530 | Back alignment and structure |
|
| >pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The Drosophila Melanogaster Rasputin Protein Length = 120 | Back alignment and structure |
|
| >pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From Cryptosporidium Parvum Length = 129 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 4e-85
Identities = 107/594 (18%), Positives = 211/594 (35%), Gaps = 109/594 (18%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + I K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 6 LEENPYDLDAWSILIREAQ---NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 62
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP----ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V +D+W Y + T G E + + ++ L +G + +S+
Sbjct: 63 DKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121
Query: 208 PLWDKYIEYEY---------MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
+W YI + Q + V +Y R NP+ +++ + + ++
Sbjct: 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKY------- 174
Query: 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318
E+ A + Y+
Sbjct: 175 --------------------------------------EEGINIHLAKKMIEDRSRDYMN 196
Query: 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD------- 371
R AKE+++ + G + P +++ W Y+ + + +
Sbjct: 197 ARR----VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252
Query: 372 -FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM--------------DLAHNALARA 416
+V+ YE+CL+ ++P+ W +E S + D A N RA
Sbjct: 253 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312
Query: 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476
+K+ ++ A ++E + + Y + I++ RR +
Sbjct: 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372
Query: 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536
+ ++++A E ++T +Y + + S++ A +I L
Sbjct: 373 KSGRMIFKKAR------EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 426
Query: 537 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGD 596
+ A I + S + + L ++ L S S P + E+ FL F GD
Sbjct: 427 YVLAYIDYLSHL---NEDNNTRVLFERVLTSGSLPPE-----KSGEIWARFLAFESNIGD 478
Query: 597 AQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSL 650
I K E R F R E ++ L +R K Y + S ++L
Sbjct: 479 LASILKVEKRRFTAF---REEYEGKETA----LLVDRYKFMDLYPCSASELKAL 525
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 4e-15
Identities = 62/384 (16%), Positives = 116/384 (30%), Gaps = 74/384 (19%)
Query: 89 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 148
+++ S D+ + +E E + + V + WKKY E
Sbjct: 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243
Query: 149 G--------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAI-------------NTYGDPE 187
+V+ YE+ + + + DIW + N +
Sbjct: 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 188 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS 247
++ER ++ + + L+ Y +YE + ++ +V IY R+L +
Sbjct: 304 EAANIYERAISTLLKKNML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 361
Query: 248 FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 307
+ +F R AE + + + A E
Sbjct: 362 YMKF--------ARRAEGIKSG-------------------RMIFKKAREDART------ 388
Query: 308 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE 367
+ A+ E K K KI FE +++ E Y+D++
Sbjct: 389 --RHHVYVTAALMEYYCSKDKSVAFKI--FELGLKKYG--------DIPEYVLAYIDYLS 436
Query: 368 RDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLAHNALARATHVFVKR 423
+ N L+ER L + + PE W R++ G + R F +
Sbjct: 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496
Query: 424 --LPEIHLFAARFKEQNGDIDGAR 445
E L R+K + A
Sbjct: 497 YEGKETALLVDRYKFMDLYPCSAS 520
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 205 bits (522), Expect = 1e-55
Identities = 72/698 (10%), Positives = 174/698 (24%), Gaps = 121/698 (17%)
Query: 30 MGSSQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDR-- 87
MGSS ++S + S + G + G + + + +
Sbjct: 1 MGSSHHHHHHS------SGLVPRGSHMASMTGGQQMGRGSMSTSLRPTSRVRDESDVIGK 54
Query: 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE-- 145
L ++++ +D + LL+ ++ +D FPL W E
Sbjct: 55 LNDMIEEQPTDIFLYVKLLKHHVS--LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFD 112
Query: 146 -ARVGSMDKVVEVYERAVQGV--TYSVDIWLHYCIFAINTYGDP-------ETIRRLFER 195
+ V R + + +WL Y + + + F+
Sbjct: 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQV 172
Query: 196 GLAYVGT-DYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILENPIQQLDRYF 245
+ + S W++Y+ + QQ + +Y +L P+ L+ +
Sbjct: 173 VVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMW 232
Query: 246 SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305
+ ++ TA E+ S
Sbjct: 233 QRYTQWEQDVNQL---TARRH---------------------IGELSAQYMNARSL---- 264
Query: 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365
++ + + + ++ Y +L W ++ +
Sbjct: 265 ----YQDWLNIT---KGLKRNLPITLNQATESNLPKPNEYDV------QQLLIWLEWIRW 311
Query: 366 -------IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418
+ D ++ +Y + PE W + +
Sbjct: 312 ESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371
Query: 419 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT---------------------ETSP 457
+ + + E N I +
Sbjct: 372 QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431
Query: 458 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517
L + N +R+ L + ++ + ++K Y + + + +S++
Sbjct: 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI-----YLENAYIEYHISKDT 486
Query: 518 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI-DFLEQLVDKFLMSNSDSPSTAN 576
+ A ++L L + + + F + Q+ E +DK +
Sbjct: 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS----------D 536
Query: 577 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFL----ASE 632
+ + + + F G ++ E R F E ++ + E
Sbjct: 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNYLQRLE 596
Query: 633 RAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQ 670
M + + G +
Sbjct: 597 LDYMVRDVMPEAIALDRGSNNLKRTMREEEDGQAFKKF 634
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 2e-54
Identities = 61/499 (12%), Positives = 140/499 (28%), Gaps = 94/499 (18%)
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 196
++A + ++ R ++ +Y++D+W+ Y + + ++E
Sbjct: 16 AIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74
Query: 197 LAYVGTDYLSFPLWDKYIE----YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 252
L + S+ L+ +YIE E Q ++ Y R L+ P+ L + F+ F
Sbjct: 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF- 133
Query: 253 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 312
E ++ +
Sbjct: 134 --------------------------------------------ELELNKITGKKIVGDT 149
Query: 313 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 372
L + + +++ ++ I G+ + E+EN +
Sbjct: 150 LPIF----QSSFQRYQQIQPLIRGWSVKNAARLIDL------EMENG----MKLGGRPHE 195
Query: 373 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432
+++ ++ L + E + Y + G + A + R + + L+
Sbjct: 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF--LSLYYG 253
Query: 433 RFKEQNGDIDGARAAYQLVHTE-----TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487
++ + Y + E S L I H N + LE L+ +
Sbjct: 254 LVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG 313
Query: 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547
+ P ++ + + + + I L S L E F
Sbjct: 314 -------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366
Query: 548 QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 607
+ L + ++K + +E+ + G +L ++ D+
Sbjct: 367 IGDEENARALFKRLEK----------------TSRMWDSMIEYEFMVGSMELFRELVDQK 410
Query: 608 ARLFLPHRSTSELRKRHAE 626
L R
Sbjct: 411 MDAIKADAILPPLPPREHN 429
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 2e-16
Identities = 64/487 (13%), Positives = 131/487 (26%), Gaps = 81/487 (16%)
Query: 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-------YWKKYADHEARVGS 150
+ W +E K++ K+ VY+ L +F + Y ++ E
Sbjct: 46 NLDLWMLYIEYVRKVS-QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104
Query: 151 MDKVVEVYERAVQGVTYSVD-IWLHYCIFAINTYGDPETIRRLFERGLAYVG-------- 201
++K+ Y RA+Q S+ +W + F + + + +
Sbjct: 105 IEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTLPIFQSSFQRYQQI 163
Query: 202 ---TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDR-YFSSFKEFAASRPL 257
S + I+ E +R+ LD Y++ F S L
Sbjct: 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYL 223
Query: 258 SELRTAEEVDAAAV-AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316
+ E+ + + + +E Y
Sbjct: 224 IGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVM---------------------DEEAVY 262
Query: 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 376
++ + E K+ E N+L+++ +
Sbjct: 263 GDLKRKYSMGEAESAEKVFSKELD----------------LLRINHLNYVLKKRGLELFR 306
Query: 377 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436
KL+ + + A+GS +N + + F
Sbjct: 307 KLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS-TLLKEEFFLFLL 365
Query: 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496
+ GD + ARA + + E +G++E L +Q + K
Sbjct: 366 RIGDEENARALF-----KRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAIL 420
Query: 497 QTLP---------------MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541
LP + FL L R+ + +++L + +L L
Sbjct: 421 PPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKISQQNNVLSNL 480
Query: 542 IHFESIQ 548
+ I
Sbjct: 481 RVEKVIS 487
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 4e-09
Identities = 39/361 (10%), Positives = 104/361 (28%), Gaps = 74/361 (20%)
Query: 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRV---YDAFLAEFPLCYGYWKKYADH 144
+ +++ S +A LE + R+ ++ L F + Y+++
Sbjct: 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222
Query: 145 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204
+G +K +V ER ++ ++ + + L+Y + ++R + G A
Sbjct: 223 LIGIGQKEKAKKVVERGIE-MSDGMFLSLYYGLVMDE-EAVYGDLKRKYSMGEAESAEKV 280
Query: 205 LSFPL---WDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELR 261
S L ++ Y ++ ++ + + + +F E+ A+ +
Sbjct: 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPY 340
Query: 262 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 321
+ E++
Sbjct: 341 NIFS-----------------------------------SGLLKHPDSTLLKEEFF---- 361
Query: 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYER 381
+ + ++ F+ + W + +++ G +L ++
Sbjct: 362 LFLLRIGDEENARALFKRLEKTSRM------------WDSMIEYEFMVGSMELFRELVDQ 409
Query: 382 CLIACANYPEYWI---------------RYVLCMEASGSMDLAHNALARATHVFVKRLPE 426
+ A RY +++ +DL +R F++ LP+
Sbjct: 410 KMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPK 469
Query: 427 I 427
I
Sbjct: 470 I 470
|
| >3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-39
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 714 AYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDI 769
P VG FV QYY +L Q PD++H+FY SS + +G ++ +I
Sbjct: 3 VMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEI 62
Query: 770 HSLVISLNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ--- 824
H V+S NFT +I+ +++ + N GV+V V G + R+F+QTF LAP+
Sbjct: 63 HRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNN-QALRRFMQTFVLAPEGSV 121
Query: 825 EKGYFVLNDIFHFLDE 840
++V NDIF + DE
Sbjct: 122 ANKFYVHNDIFRYQDE 137
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-38
Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 36/284 (12%)
Query: 350 PLSVTELENWHNYLDFIERDG--------DFNKVVKLYERCLIACANYPEYWIRYVLCME 401
P +++ W Y+ + + + +V+ YE+CL+ ++P+ W +E
Sbjct: 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61
Query: 402 ASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447
S D A N RA +K+ ++ A ++E + +
Sbjct: 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121
Query: 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507
Y + I++ RR ++ ++++A + + H Y +
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV------YVTAA 175
Query: 508 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567
+ S++ A +I L + A I + S + L ++ L S
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT---RVLFERVLTS 232
Query: 568 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611
S P + E+ FL F GD I K E R F
Sbjct: 233 GSLPPE-----KSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 3e-15
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 8/150 (5%)
Query: 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGY-WKKYADHEARVGSMDKVVEVYERAV 162
A EE+ K+ +Y+ LA + + +Y R + ++++A
Sbjct: 106 ADYEESRM----KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161
Query: 163 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 222
+ +++ + D ++FE GL G YI+Y E
Sbjct: 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNE 218
Query: 223 WSRVAMIYTRILENPIQQLDRYFSSFKEFA 252
+ +++ R+L + ++ + F
Sbjct: 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFL 248
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 9e-15
Identities = 56/328 (17%), Positives = 103/328 (31%), Gaps = 74/328 (22%)
Query: 138 WKKYADHE--------ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----------- 178
WKKY E + +V+ YE+ + + + DIW +
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70
Query: 179 --AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236
N + ++ER ++ + + L+ Y +YE + ++ +V IY R+L
Sbjct: 71 GDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 237 PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 296
+ + +F R AE + + + A
Sbjct: 129 EDIDPTLVYIQYMKF--------ARRAEGIKSG-------------------RMIFKKAR 161
Query: 297 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 356
E + A+ E K K KI FE +++ Y +
Sbjct: 162 EDARTR--------HHVYVTAALMEYYCSKDKSVAFKI--FELGLKK-YGDIPEY----- 205
Query: 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLAHNA 412
Y+D++ + N L+ER L + + PE W R++ G +
Sbjct: 206 --VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263
Query: 413 LARATHVFVKR--LPEIHLFAARFKEQN 438
R F + E L R+K +
Sbjct: 264 EKRRFTAFREEYEGKETALLVDRYKFMD 291
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 39/305 (12%), Positives = 90/305 (29%), Gaps = 32/305 (10%)
Query: 209 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEV-- 266
+W KYI++E + + T+ R +++ + L L ++
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITK----------RVMFAYE-----QCLLVLGHHPDIWY 54
Query: 267 DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 326
+AA ++ N + +A + +S L + L A EE K
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114
Query: 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 386
++ S + + + + Y+ F R ++++
Sbjct: 115 YEKVHS---IYNRLL-------AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164
Query: 387 ANYPEYWIRYVLC-MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445
++ L S +A + PE L + + + R
Sbjct: 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTR 223
Query: 446 AAYQ--LVHTETSPGLLEAI-IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 502
++ L P I + E +G+L + ++ + + + +L
Sbjct: 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALL 283
Query: 503 YAQYS 507
+Y
Sbjct: 284 VDRYK 288
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 45/305 (14%), Positives = 94/305 (30%), Gaps = 61/305 (20%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYA--------------DHEARVGSMDKVVEVYERAVQ- 163
++ Y+ L W + A D D+ +YERA+
Sbjct: 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93
Query: 164 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 223
+ ++ ++ Y + + E + ++ R LA D ++ +Y+++ +
Sbjct: 94 LLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTL--VYIQYMKFARRAEGI 150
Query: 224 SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE 283
MI+ + E+ + Y ++ E +++ A E G +
Sbjct: 151 KSGRMIFKKAREDARTRHHVYVTAALM--------EYYCSKDKSVAFKIF-----ELGLK 197
Query: 284 VKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 343
+ E + YI + E ++ + FE +
Sbjct: 198 KYGDIPEY---------------------VLAYI----DYLSHLNEDNNTRVLFERVLTS 232
Query: 344 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403
+ E W +L F GD ++K+ +R A E L ++
Sbjct: 233 GSLPPEKSG----EIWARFLAFESNIGDLASILKVEKRRFTAFREEYE-GKETALLVDRY 287
Query: 404 GSMDL 408
MDL
Sbjct: 288 KFMDL 292
|
| >3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} Length = 120 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-36
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT 779
VG FV QYY +L + P+ +H+FY+ SS I + + +IH+ + LNF
Sbjct: 3 HMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES---KLVVGQREIHNRIQQLNFN 59
Query: 780 AI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFH 836
+I +++ + GV+V V+G + R+F QTF LA Q K Y+V NDIF
Sbjct: 60 DCHAKISQVDAQATLGNGVVVQVTGELSNDGQP-MRRFTQTFVLAAQSPKKYYVHNDIFR 118
Query: 837 F 837
+
Sbjct: 119 Y 119
|
| >1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A Length = 125 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF- 778
+ F YY + Y + S + T DI ++SL F
Sbjct: 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF----ETSQLQGAKDIVEKLVSLPFQ 60
Query: 779 -TAIEIKTINSLGS-WNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFH 836
I T+++ + G VLVM++G + E ++F Q F L P Y+V NDIF
Sbjct: 61 KVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
Query: 837 F 837
Sbjct: 121 L 121
|
| >1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A Length = 127 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-34
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT 779
Q+GS F+ YYQ+ + Y DAS + + I + SL F
Sbjct: 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW----EGQQFQGKAAIVEKLSSLPFQ 62
Query: 780 AI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837
I I + + + ++ MV G +K E F Q F L + ND+F
Sbjct: 63 KIQHSITAQDHQPTPDSCIISMVVGQLKADE-DPIMGFHQMFLLKNINDAWVCTNDMFRL 121
Query: 838 LDEE 841
Sbjct: 122 ALHN 125
|
| >3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} Length = 154 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 3e-33
Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 691 AYSAYGSSYPTPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDAS 750
++ + S +S + F+ YY V+ ++ + + Y+ S
Sbjct: 4 SHHHHHHSQDPNSSSSMKTTQEINKEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVS 63
Query: 751 SMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTI-------NSLGSWNGGVLVMVSGS 803
+ + + + I + +L T +I+++ G +GG+L+ V+G+
Sbjct: 64 NAVW----NGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGA 119
Query: 804 VKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839
V +R F QT L ++ Y V +D F ++D
Sbjct: 120 VTVDG-DSKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154
|
| >1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A Length = 140 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-32
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 721 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA 780
+ FV YY + ++ L+ + Y ++++ + + S + L +
Sbjct: 14 CRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW----NGNAVSGQESLSEFFEMLPSSE 69
Query: 781 IEIKTINS------LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG----YFV 830
+I ++ VLV++ GSVK + ++R F Q F L Q + +
Sbjct: 70 FQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKI 128
Query: 831 LNDIFHFLD 839
+D F F D
Sbjct: 129 ASDCFRFQD 137
|
| >1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 Length = 129 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 8e-31
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF 778
Q+G FV YYQ Q + Y S + D +I + SLNF
Sbjct: 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED----TQFQGQANIVNKFNSLNF 65
Query: 779 --TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIF 835
EI ++ S N G +V V+G V+ + + KF Q F L P G+ + ND+F
Sbjct: 66 QRVQFEITRVDCQPSPNNGSIVFVTGDVRIDD-GQPLKFSQVFNLMPSGNGGFMIFNDLF 124
Query: 836 HF 837
Sbjct: 125 RL 126
|
| >2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A Length = 154 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-30
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 20/151 (13%)
Query: 710 AAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDS---------- 759
++ A + F+ YY+ ++ P + FY+ + + + S
Sbjct: 1 GSHMASMGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVL 60
Query: 760 -TESASSMLDIHSLVISLNFTAIEIKT-INSL-----GSWNGGVLVMVSGSVKTKEFCRR 812
T + +I+ + +K ++++ G + +L+M +G +
Sbjct: 61 PTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTG-TPV 119
Query: 813 RKFVQTFFLAPQEKG--YFVLNDIFHFLDEE 841
KF QTF L P G + + NDI F+
Sbjct: 120 YKFCQTFILLPSSNGSTFDITNDIIRFISNS 150
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 5e-16
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
++SV+V P V + ++ E F FG + V +++ +A VE D+ +
Sbjct: 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SVVMDKDKG-----VFAIVEMGDVGAREAV 61
Query: 1093 IQASPIQLAGRQVYIEERRPNTGSTSRGGR 1122
+ S L G ++ + R +
Sbjct: 62 LSQSQHSLGGHRLRVRPREQKEFQSPASKS 91
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-14
Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
++ N+P ++T ++ + + + + V V + G+ A V+F++
Sbjct: 12 NSAKVCAHITNIPFSITKMDVLQFLEGIP-VDENAVHVLVDNNGQGLGQALVQFKNEDDA 70
Query: 1090 QNAIQASPIQLAGRQVYI-----EERRPNTGSTSRGGRRGRGRG 1128
+ + + +L GR+ ++ E+ R + G+ G G
Sbjct: 71 RKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSGPSSG 114
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-14
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
V+VR L +V ++ E + FG I + + ++ A VEFE+I + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMPFKR------QALVEFENIDSAKECV 68
Query: 1094 QA---SPIQLAGRQVYI------EERRPNTGSTSRG 1120
P+ +AG+Q + RP S G
Sbjct: 69 TFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
V++R L V ++ E Q FG I V + ++ A VEFED+ G NA+
Sbjct: 22 PVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMPKKR------QALVEFEDVLGACNAV 74
Query: 1094 QA---SPIQLAGRQVYIE 1108
+ I +AG ++
Sbjct: 75 NYAADNQIYIAGHPAFVN 92
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 4e-13
Identities = 13/97 (13%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1086
G + ++++ NL + E++ + V + + + +V+FE
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKN--DLAVVDVRTGTNRKFGYVDFESA 64
Query: 1087 SGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRR 1123
++ A++ + +++ G ++ +E+ + R R
Sbjct: 65 EDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAART 101
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ +NL +T E++E F++ I+ +++ A++EF+ + + ++
Sbjct: 102 LLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK------GIAYIEFKSEADAEKNLEE 155
Query: 1096 -SPIQLAGRQVYI 1107
++ GR V +
Sbjct: 156 KQGAEIDGRSVSL 168
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-13
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 1009 GVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR 1068
G S +S D+L +E + ++V+ L + + ++E+ F G+++ D +
Sbjct: 1 GSSGSSGKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIIS 59
Query: 1069 NRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI---EERRPNTGSTSRG 1120
+R A+VEF +I V AI + +L G + + + + S G
Sbjct: 60 DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLSGPSSG 114
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 6e-13
Identities = 98/649 (15%), Positives = 193/649 (29%), Gaps = 199/649 (30%)
Query: 119 KIRRVY-DAFLAEFPLCYGYWKKYADHEARVGS---MDKVVEVYERAVQGVTYSVDIWLH 174
I V+ DAF+ F C K D + S +D ++ + T + W
Sbjct: 20 DILSVFEDAFVDNFD-C----KDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRL-FWT- 70
Query: 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234
+ + + E +++ E L Y+++ + +
Sbjct: 71 -----LLSKQE-EMVQKFVEEVLRI---------------NYKFLMSPIKTEQRQPSMMT 109
Query: 235 ENPIQQLDRYFSS---FKEFAASR--PLSELRTA--EEVDAAAVAVAAAPSETGAEVKAN 287
I+Q DR ++ F ++ SR P +LR A E A V + +G A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVAL 168
Query: 288 EEEVQPDATEQTSKP-----VSAGLTEAEE-----LEKYIAVREEMYKKAKEFDSKII-- 335
+V Q ++ + E L+K + + + + S I
Sbjct: 169 --DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 336 --GFETAIRRPYFHVKP----LSVTELEN-WH----NYLDF------IERDG---DFNKV 375
+ +RR KP L V L N + N + R DF
Sbjct: 227 IHSIQAELRR-LLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 376 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE--------- 426
L + + + L L + + LP
Sbjct: 284 ATTTHISL----------DHHSMTLTPDEVKSL----LLKYLDCRPQDLPREVLTTNPRR 329
Query: 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE--------D 478
+ + A ++ D ++ V+ + L II+ + L LE D
Sbjct: 330 LSIIAESIRDGLATWDN----WKHVNCDK----LTTIIESS-----LNVLEPAEYRKMFD 376
Query: 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF--------LH---LVSRNAEKAR----QI 523
S++ + I + L +++ + LH LV + +++ I
Sbjct: 377 RLSVFPPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 524 LVDSLDHV----QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL-------MSNSDSP 572
++ + L + +++ H+ ++ D + +D++ + N +
Sbjct: 432 YLELKVKLENEYALHRSIVD---HYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIE-- 485
Query: 573 STANAAEREELSCVFLEF--------------------LGLFGDAQL----IKKAEDRHA 608
+ VFL+F L + I + ++
Sbjct: 486 ---HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 609 RL------FLPHRSTSELRKRHAEDFLASERAKMAKS---YSGAPSPAQ 648
RL FLP + + ++ D L A MA+ + A Q
Sbjct: 543 RLVNAILDFLPKIEENLICSKYT-DLL--RIALMAEDEAIFEEAHKQVQ 588
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 3e-12
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +++R LP VT E+ FG++ N + G AF+E +
Sbjct: 17 RVIHIRKLPIDVTEGEVISLGLPFGKVT-------NLLMLKGKNQAFIEMNTEEAANTMV 69
Query: 1094 QA---SPIQLAGRQVYI------EERRPNTGSTSRG 1120
L G+ +YI E + ++ + +R
Sbjct: 70 NYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARA 105
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-12
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +++R LP VT E+ FG++ N + G AF+E +
Sbjct: 16 RVLHIRKLPGEVTETEVIALGLPFGKVT-------NILMLKGKNQAFLELATEEAAITMV 68
Query: 1094 QA---SPIQLAGRQVYIE 1108
L + +YI+
Sbjct: 69 NYYSAVTPHLRNQPIYIQ 86
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-12
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NLP + +IE+ F +G I+ + ++NR+ G +AFVEFED ++A+
Sbjct: 25 IYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRRG--GPPFAFVEFEDPRDAEDAVYG 80
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
G ++ +E R RG G G
Sbjct: 81 RDGYDYDGYRLRVEFPRS-----GRGTGSGPSSG 109
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-11
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +++R LP VT E+ FG++ + + ++ + AF+E +
Sbjct: 32 RVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKGK------NQAFIEMNTEEAANTMV 84
Query: 1094 QA---SPIQLAGRQVYI------EERRPNTGSTSR 1119
L G+ +YI E + ++ + +R
Sbjct: 85 NYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQAR 119
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 1018 GFEAVDD-SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV 1076
G ++D G + ++++ NL + E++ + V + +
Sbjct: 1 GSHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKN--DLAVVDVRTGTNR 58
Query: 1077 CYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ +V+FE ++ A++ + +++ G ++ +E+ R G RG
Sbjct: 59 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEK------PKGRDGTRG 100
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 14/85 (16%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDI 1086
++ + +SVY++ P+ T +I+E ++ G++ + ++ R+ + FV F+ I
Sbjct: 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV----LNIQMRRTLHKAFKGSIFVVFDSI 62
Query: 1087 SGVQNAIQASPIQLAGRQVYIEERR 1111
+ ++ + + I +
Sbjct: 63 ESAKKFVETPGQKYKETDLLILFKD 87
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+VK ++VRNL +TVT +E+ F FG++ V+ KD YAF+ F++ G
Sbjct: 10 KVKVLFVRNLANTVTEEILEKAFSQFGKL----ERVKKLKD-----YAFIHFDERDGAVK 60
Query: 1092 AIQA-SPIQLAGRQVYIEE-RRPNTGSTSRGGRRGRGRG 1128
A++ + L G + I + P+ R +R G
Sbjct: 61 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAASG 99
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-11
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
VYV NL + E+E F +G ++ V++ +AFVEFED ++A++
Sbjct: 2 KVYVGNLGTGAGKGELERAFSYYGPLR--TVWIARN----PPGFAFVEFEDPRDAEDAVR 55
Query: 1095 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 1147
+ G +V +E S G R P R L G
Sbjct: 56 GLDGKVICGSRVRVEL--------STGMPRRSRFDR----PPARRKLLEVLFNG 97
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-11
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 11/134 (8%)
Query: 989 PAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAF 1048
AP T S T+ E E E + +SVYV N+ TA
Sbjct: 2 IAPCMQTTHSKMTAGAYTEGPPQPLSAEEK----------KEIDKRSVYVGNVDYGSTAQ 51
Query: 1049 EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108
++E F + G I + ++ YA++EF + + V A+ GR + +
Sbjct: 52 DLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110
Query: 1109 ERRPNTGSTSRGGR 1122
+R N S R
Sbjct: 111 PKRTNMPGISSTDR 124
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 2e-10
Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 2/172 (1%)
Query: 993 PTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEE 1052
++ + + G A + + G+ ++Y+ NL T ++ E
Sbjct: 28 SANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 87
Query: 1053 EFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASP-IQLAGRQVYIEER 1110
+ G + F NR + +A V + + + P +L G+ +
Sbjct: 88 AVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147
Query: 1111 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNG 1162
S R + + + G Q G R G
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAV 199
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-10
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+Y+ NL VTA ++ + F + G + YAFV++ D + AI
Sbjct: 9 NKLYIGNLSPAVTADDLRQLFGDRKLPL-AGQVLLKSG------YAFVDYPDQNWAIRAI 61
Query: 1094 QA--SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ ++L G+ + ++ S G G
Sbjct: 62 ETLSGKVELHGKIMEVDYSVS-KKLRSSGPSSG 93
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+ +++ NLP T EI F+ +G++ + Y FV ED + ++
Sbjct: 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVL--ECDIIKN-------YGFVHIEDKTAAED 57
Query: 1092 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 1130
AI+ +L G + +E S+ + S
Sbjct: 58 AIRNLHHYKLHGVNINVEA--------SKNKSKASSGPSS 89
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
D V +R LP + EI + F I P+G+ + AFV+F
Sbjct: 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 1089 VQNAIQASPIQLAGRQVYIE 1108
+ A++ ++ R + I
Sbjct: 70 AEKALKKHKERIGHRYIEIF 89
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++YV NL T +I E F G IK + ++ + FVE+ + +NA+
Sbjct: 40 CTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 1094 QA-SPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGR 1146
+ + +L R + + RG G+ R Y+ D GR GG G
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGR-GGYGKLA 153
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ +YV N+P +T + + F R+ G V + +AF+EF +
Sbjct: 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64
Query: 1090 QNAIQASPIQLAGRQVYIEERRPN 1113
A+ I G+ + I RRP+
Sbjct: 65 TQAMAFDGIIFQGQSLKI--RRPH 86
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
+++ LP+ + +++E +FG +K V++ G+ YAF E+ DI+ AI
Sbjct: 117 LFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSAT--GLSKGYAFCEYVDINVTDQAI 173
Query: 1094 QA-SPIQLAGRQVYI 1107
+ +QL +++ +
Sbjct: 174 AGLNGMQLGDKKLLV 188
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-10
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 1036 VYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++ NLP V+ ++ F +G I + ++N + F++F++ V++AI+
Sbjct: 13 LFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIKNA-------FGFIQFDNPQSVRDAIE 63
Query: 1095 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
S G+++ +E N G G
Sbjct: 64 CESQEMNFGKKLILEVSSSNARPQFDHGDHG 94
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-10
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
E + +S+YV N+ TA E+E F G + + ++ +A++EF D V
Sbjct: 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESV 61
Query: 1090 QNAIQASPIQLAGRQVYIEERRPN 1113
+ ++ GRQ+ + +R N
Sbjct: 62 RTSLALDESLFRGRQIKVIPKRTN 85
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-10
Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+++ +NL +T E++E F++ I+ +++ G A++EF+ +
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK----G--IAYIEFKSEADA 66
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ ++ ++ GR V + + +GG RG
Sbjct: 67 EKNLEEKQGAEIDGRSVSLYY------TGEKGGTRG 96
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 9e-10
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V N+ + T+ E+ F+ GR+ V YAFV E + + AI
Sbjct: 12 IFVGNVSAACTSQELRSLFERRGRVI--ECDVVKD-------YAFVHMEKEADAKAAIAQ 62
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
+ ++ G+++ +E ST + G G
Sbjct: 63 LNGKEVKGKRINVEL------STKGQKKSGPSSG 90
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 9e-10
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++V N+ T T E+ +F+ +G + + V++ YAFV E AI
Sbjct: 11 TKLHVGNISPTCTNQELRAKFEEYGPVI-ECDIVKD--------YAFVHMERAEDAVEAI 61
Query: 1094 QA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ + G++++++ T+ G G
Sbjct: 62 RGLDNTEFQGKRMHVQLSTS-RLRTASGPSSG 92
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
VK +YVRNL + + IE+EF N V+ +D YAFV F +
Sbjct: 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAV--ERVKKIRD-----YAFVHFSNREDAVE 66
Query: 1092 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
A++A + L G + + +P S G G
Sbjct: 67 AMKALNGKVLDGSPIEVTLAKPVD-KDSSGPSSG 99
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +Y+RNLP +TA E+ + F +G I+ +R A+V +EDI +NA+
Sbjct: 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQ----IRVGNTPETRGTAYVVYEDIFDAKNAV 64
Query: 1094 QA-SPIQLAGRQVYIEERRPN 1113
S ++ R + + N
Sbjct: 65 DHLSGFNVSNRYLVVLYYNAN 85
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 17/123 (13%)
Query: 1008 SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVF 1066
SG S + V + + V++ NL + V ++E F +GR+ G
Sbjct: 3 SGSSGMSLKLQASNVTNKNDPKSINSR-VFIGNLNTALVKKSDVETIFSKYGRVA--GCS 59
Query: 1067 VRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1125
V YAFV++ + + A+ + LAG+ + I + R G
Sbjct: 60 VHKG-------YAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP-----KPDRSGP 107
Query: 1126 GRG 1128
G
Sbjct: 108 SSG 110
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR----KDVVGVCYAFVEFE 1084
+ +++ L ++ F G I + + +++R + +AF+ FE
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKDRTSKSR-----GFAFITFE 56
Query: 1085 DISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGR 1142
+ + +NA + + L G+ + +E+ + + + G R R S + +P G
Sbjct: 57 NPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF---QSGGRRRPPASSRNRSPSGSLEHH 112
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V V LP + + ++++ + G + + +D VEF + A++
Sbjct: 18 VVVSGLPPSGSWQDLKDHMREAGDV----CYADVYRD----GTGVVEFVRKEDMTYAVRK 69
Query: 1096 ---SPIQ-LAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1129
+ + G YI + S S G R G S
Sbjct: 70 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSSGPSS 107
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-09
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC-------YAFVEF 1083
G + +YV N+P +T + + F R+ G + + V +AF+EF
Sbjct: 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEF 58
Query: 1084 EDISGVQNAIQASPIQLAGRQVYIEERRPN 1113
+ A+ I G+ + I RRP+
Sbjct: 59 RSVDETTQAMAFDGIIFQGQSLKI--RRPH 86
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ LP+ + +++E +FG +K V++ + YAF E+ DI+ AI
Sbjct: 97 LFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155
Query: 1096 -SPIQLAGRQVYI 1107
+ +QL +++ +
Sbjct: 156 LNGMQLGDKKLLV 168
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-09
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---------GVCYA 1079
D + +++V+ L VT + + F+ G IK + + ++ G A
Sbjct: 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG--EA 60
Query: 1080 FVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 1130
V F+D + AI + +G + + GG G +
Sbjct: 61 TVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGLEHH 112
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-09
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V V LP + + ++++ + G + + +D VEF + A++
Sbjct: 19 VVVSGLPPSGSWQDLKDHMREAGDV----CYADVYRD----GTGVVEFVRKEDMTYAVRK 70
Query: 1096 --------SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQT 1132
+ A +V ++ R + SR R R R ++
Sbjct: 71 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRS 115
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-08
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 976 SFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKS 1035
F + T+D+N + +S + E S ++ + +S
Sbjct: 53 KFNRLNRLTTDFNVIVE-ALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRS 111
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1093
VY++ P+ T +I+E ++ G++ ++ R+ + FV F+ I + +
Sbjct: 112 VYIKGFPTDATLDDIKEWLEDKGQVL----NIQMRRTLHKAFKGSIFVVFDSIESAKKFV 167
Query: 1094 QASPIQLAGRQVYIE 1108
+ + + I
Sbjct: 168 ETPGQKYKETDLLIL 182
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 1009 GVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR 1068
G S +S VY++ LP + + F+ I D +++
Sbjct: 1 GSSGSSGKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLD-IVEDSIYIA 59
Query: 1069 NRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRG 1126
+ FVEF + + + A+ + R + + ++ +R +
Sbjct: 60 YGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQS 119
Query: 1127 RGS 1129
S
Sbjct: 120 GPS 122
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 998 SNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNF 1057
S + ++ + G + D + V++R LP T +I F
Sbjct: 12 SGLVPRGSHMASMTGG-QQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL 70
Query: 1058 GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNTGST 1117
P V + D A VEF A+ + R YIE +T
Sbjct: 71 N---PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR--YIELFLNSTTGA 125
Query: 1118 SRGGRRGRGRG 1128
S G +
Sbjct: 126 SNGAYSSQVMQ 136
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV-VGVCYAFVEFEDISGVQNAIQ 1094
+++ +P EI EE D + + D +AFVE+E A +
Sbjct: 11 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 70
Query: 1095 A---SPIQLAGRQVYIE------ERRPNTGSTSRGGRRG 1124
IQL G Q+ ++ + + T G G
Sbjct: 71 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVSGPSSG 109
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V NLP +T E+ + F+ +G+ VF+ K G + F+ E + + A
Sbjct: 18 LFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKDK---G--FGFIRLETRTLAEIAKVE 70
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRG 1120
+ L G+Q+ + + TS
Sbjct: 71 LDNMPLRGKQLRVRFACHSASLTSGP 96
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 11/93 (11%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ N P + T I + Q+ + + + + + +A+++ + ++
Sbjct: 120 LWMTNFPPSYTQRNIRDLLQDINVVALS-IRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGR 1127
+ +++ G + + P S GR
Sbjct: 179 LNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGR 211
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1032 EVKSVYVRNLPSTVT-AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
E + + +RNL + + + E F+ FG I+ + ++ C AF+ FE+ +
Sbjct: 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268
Query: 1091 NAIQASPIQLAGRQVYIE--ERRP 1112
A+Q + L R++ + +++P
Sbjct: 269 RALQMNRSLLGNREISVSLADKKP 292
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQ 1090
E+ +V V+NLP + ++ + F++ G I V V + K +A +EF G
Sbjct: 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPII--HVDVADSLKKNFR--FARIEFARYDGAL 95
Query: 1091 NAIQASPIQLAGRQVYIE 1108
AI + + ++ +
Sbjct: 96 AAITKTHKVVGQNEIIVS 113
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++V L + + EF FG I+ V+ +A++++E + Q A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKGDS------FAYIQYESLDAAQAAC 70
Query: 1094 QASPIQLAGRQVYIEERR 1111
+ G + +RR
Sbjct: 71 AK----MRGFPLGGPDRR 84
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 1028 LDEGE--VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEF 1083
L EG+ +V+V + + EI F +G +K + + +R GV Y FV F
Sbjct: 2 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVK-EVKIITDRT---GVSKGYGFVSF 57
Query: 1084 EDISGVQNAIQASPIQLAGRQVYIEE--RRPNTGSTSRGGR 1122
+ VQ ++ S I G+++ + R+ N + R
Sbjct: 58 YNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLSTYHVQPR 97
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 4e-08
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
VYV NL + E+E F +G ++ V+V +AFVEFED +A++
Sbjct: 75 KVYVGNLGNNGNKTELERAFGYYGPLR--SVWVARNPP----GFAFVEFEDPRDAADAVR 128
Query: 1095 A-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1123
L G +V +E S G +R
Sbjct: 129 ELDGRTLCGCRVRVEL--------SNGEKR 150
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 1036 VYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++ NLP V+ ++ F +G I + ++N + F++F++ V++AI+
Sbjct: 25 LFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIKNA-------FGFIQFDNPQSVRDAIE 75
Query: 1095 A-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1123
S G+++ +E S R
Sbjct: 76 XESQEMNFGKKLILEV--------SSSNAR 97
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-08
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC------YAFVEFEDIS 1087
+ +YV N+P +T + + F R+ G+ V+ V +AF+EF +
Sbjct: 7 RRLYVGNIPFGITEEAMMDFFNAQMRLG--GLTQAPGNPVLAVQINQDKNFAFLEFRSVD 64
Query: 1088 GVQNAIQASPIQLAGRQVYIEERRP 1112
A+ I G+ + I RRP
Sbjct: 65 ETTQAMAFDGIIFQGQSLKI--RRP 87
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-08
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
GE K++ + NL + T ++E F+ IK P +++ G YAF+EF
Sbjct: 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK----G--YAFIEFASFEDA 66
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ A+ + + ++ GR + +E + P S + G G
Sbjct: 67 KEALNSCNKREIEGRAIRLELQGPRG-SPNSGPSSG 101
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 1034 KSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+ +++ NLP S + + + + +G+IK + + +R + AF+E E
Sbjct: 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILMRMK------SQAFIEMETREDAMAM 78
Query: 1093 IQ---ASPIQLAGRQVYIE 1108
+ + GR V ++
Sbjct: 79 VDHCLKKALWFQGRCVKVD 97
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-08
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---------GVCYA 1079
++ + ++YV+ L +VT ++ + F+ G +K + + + G A
Sbjct: 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG--DA 68
Query: 1080 FVEFEDISGVQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1121
V +ED + A++ G ++ + ++P S G
Sbjct: 69 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSGPSSG 113
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-08
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++VR P V E+ E F FG +K V+ +AFVEFE+ AI+
Sbjct: 34 LFVRPFPLDVQESELNEIFGPFGPMK----EVKILNG-----FAFVEFEEAESAAKAIEE 84
Query: 1096 -SPIQLAGRQVYIEERRP 1112
A + + + +
Sbjct: 85 VHGKSFANQPLEVVYSKL 102
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-08
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V++R LP T +I F P V + D A VEF A+
Sbjct: 18 VHMRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 74
Query: 1096 SPIQLAGRQVYIEERRPNTGSTSRGGRR 1123
+ R Y+E +T TS G
Sbjct: 75 DKANMQHR--YVELFLNSTAGTSGSGPS 100
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-08
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ K ++V N+P ++ + F FG+I D + N + G + FV FE+ +
Sbjct: 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERGSKG--FGFVTFENSAD 67
Query: 1089 VQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1121
A + + GR++ + R T S G
Sbjct: 68 ADRAREKLHGTVVEGRKIEVNNATARVMTNSGPSSG 103
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1086
G +V +R P VT + E F +KP + + Y FV+F +
Sbjct: 4 GSSGTTCHTVKLRGAPFNVTEKNVME-F--LAPLKPVAIRIVRNAHGNKTGYIFVDFSNE 60
Query: 1087 SGVQNAIQASPIQLAGRQ--VYIEERRPNTG 1115
V+ A++ + + GR V+ E+ P++G
Sbjct: 61 EEVKQALKCNREYMGGRYIEVFREKSGPSSG 91
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
VK ++V + + + F+ +G+I+ + +R +AFV F+D V
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 1093 IQASPIQLAGRQVYIE--ERRPNTGSTSRGGRRGR 1125
+ + G + + S + +RGR
Sbjct: 163 VIQKYHTVNGHNCEVRKALSKQEMAS-ASSSQRGR 196
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ +++ +++ L T + F+ +G + D V +R+ + FV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 1089 VQNAIQASPIQLAGRQV 1105
V A+ A P ++ GR V
Sbjct: 68 VDAAMNARPHKVDGRVV 84
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V+N+P TV+ EI + F + + P V ++ + + A V FE A+
Sbjct: 18 IKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 1096 -SPIQLAGRQVYIEERRPNTG 1115
+ + R ++ P++G
Sbjct: 77 LNDRPIGSR--KVKLSGPSSG 95
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-07
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
++VRNL T + ++E+ F +G + + + + +AFV F
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 1092 AIQA---SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
A Q GR +++ ++ G G
Sbjct: 66 AYAEVDGQVFQ--GRMLHVLPSTIKKEASQSGPSSG 99
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-07
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
V++ L VT I E F +G+IK R + YA+VEFE+ + A+
Sbjct: 7 VHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMH-PHLSKGYAYVEFENPDEAEKAL 64
Query: 1094 QA-SPIQLAGRQVYIEERRP 1112
+ Q+ G+++
Sbjct: 65 KHMDGGQIDGQEITATAVLA 84
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQN 1091
++ V NL + + F+ +GR+ D R K G +AFV F D Q+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRG--FAFVRFHDRRDAQD 70
Query: 1092 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1121
A A +L GR++ ++ R S
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDLSGPS 101
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-07
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
VYV NLP +++ + G + + R AF+ + D + Q A+
Sbjct: 21 DVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPR------RRAFLHYPDSAAAQQAVS 74
Query: 1095 A-SPIQLAGRQVYIEERRP 1112
++L + + R
Sbjct: 75 CLQGLRLGTDTLRVALARQ 93
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---GVCYAFVEFEDISGVQ 1090
+ ++ NLP VT I+E F+ R + G + + EFED+ +
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNIS--AVRLPREPSNPERLKG--FGYAEFEDLDSLL 71
Query: 1091 NAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+A+ + L +++ ++ G G
Sbjct: 72 SALSLNEESLGNKRIRVDVADQA-QDKDSGPSSG 104
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 9/82 (10%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVF-VRNRKDVVGVCYAFVEFEDISGVQNA 1092
++ +RN+ I + + + + +++++ +AFV+
Sbjct: 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL 69
Query: 1093 IQA-----SPIQLAGRQVYIEE 1109
+Q P+++ G+ + ++
Sbjct: 70 LQILQSLHPPLKIDGKTIGVDF 91
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---------GVCYA 1079
+ +++V+ L VT + + F+ G IK + + ++ G A
Sbjct: 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG--EA 66
Query: 1080 FVEFEDISGVQNAIQA 1095
V F+D + AI
Sbjct: 67 TVSFDDPPSAKAAIDW 82
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQN 1091
+ VRN+P EI E F FG +K V + + G + FV+F +
Sbjct: 16 SKILVRNIPFQANQREIRELFSTFGELK--TVRLPKKMTGTGAHRGFGFVDFITKQDAKK 73
Query: 1092 AIQASP--IQLAGRQVYIEERRPNTGSTSRGG 1121
A A L GR++ +E S
Sbjct: 74 AFNALCHSTHLYGRRLVLEWADSEVTVQSGPS 105
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-07
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRI------KPDGVFVRNRKDVVGVCYAFVEFEDI 1086
++VRNLP T ++++F G + +G +++ V+FE
Sbjct: 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENG---KSK------GCGVVKFESP 58
Query: 1087 SGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTS 1118
+ A + + ++L+GR++ + R +G +S
Sbjct: 59 EVAERACRMMNGMKLSGREIDVRIDRNASGPSS 91
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGV 1089
E ++V + T +I ++F +G IK + +R+ + G Y VE+E
Sbjct: 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKG--YTLVEYETYKEA 77
Query: 1090 QNAIQA-SPIQLAGRQVYIEE---RRPNTGSTSRGGRRGRGRGS 1129
Q A++ + L G+ + ++ R P G G RR R
Sbjct: 78 QAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDR 121
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQNAI 1093
++ V LP +T E+ F+ G I + R+ K YAFV+F Q AI
Sbjct: 5 NLIVNYLPQDMTDRELYALFRAIGPIN--TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 62
Query: 1094 QA-SPIQLAGRQVYIEERRP 1112
+ + I + +++ + RP
Sbjct: 63 KVLNGITVRNKRLKVSYARP 82
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NLP T+T +++ F +G I +R++ AFV + Q AI A
Sbjct: 92 LYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 1011 SSHMPESGFEAVDDSLGLDEGEVKSVYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRN 1069
S +P GL + V NL P VT + F +G ++ + N
Sbjct: 12 SGLVPRGSHMGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN 70
Query: 1070 RKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
+K+ A V+ D + Q A+ + +L G+ + I + R G+ +G
Sbjct: 71 KKE-----NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT 125
Query: 1129 SYQTDAPRGRFGGRG 1143
++P RF G
Sbjct: 126 KDYGNSPLHRFKKPG 140
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 8e-06
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++++ N+P +V+ +++ F + G + F + + A ++ + A+
Sbjct: 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK-----MALIQMGSVEEAVQAL 206
Query: 1094 QA 1095
Sbjct: 207 ID 208
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1093
++V +P T + ++ E F+ +G + + +R+R FV F A
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 1094 QASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
A L +V P + +
Sbjct: 65 NA----LHNMKVLPGMHHPIQMKPADSEKNNAVED 95
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIK-------PDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+++ + T +I F +FG+I+ PDG +R AFV F +
Sbjct: 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG---LSR------GCAFVTFTTRAM 148
Query: 1089 VQNAIQA----SPIQLAGRQVYI 1107
Q AI+A ++ + +
Sbjct: 149 AQTAIKAMHQAQTMEGCSSPMVV 171
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+ ++YV L T+T ++ F FG I+ + V R+ AF++F +
Sbjct: 11 TITTLYVGGLGDTITETDLRNHFYQFGEIR--TITVVQRQQ-----CAFIQFATRQAAEV 63
Query: 1092 AIQASP--IQLAGRQVYI 1107
A + S + + GR++ +
Sbjct: 64 AAEKSFNKLIVNGRRLNV 81
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 1010 VSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-- 1067
+ + + + ++++ V +P+TV ++ + F+ +G I+ +
Sbjct: 19 LQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR 78
Query: 1068 ---RNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1123
++R Y FV+F+ S Q AI + + +++ + G
Sbjct: 79 ETRQSR------GYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAV 132
Query: 1124 GRGRG 1128
G G G
Sbjct: 133 GDGNG 137
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 5e-07
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
++ + ++V + V E EE F +G I D + ++ + FV ++
Sbjct: 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADA 141
Query: 1089 VQNAIQASPIQLAGRQVYI 1107
V Q I R++ I
Sbjct: 142 VDRVCQNKFIDFKDRKIEI 160
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-07
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1034 KSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+ V++ + +++ + + FG I + + + AF+E Q A
Sbjct: 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNKI------NEAFIEMATTEDAQAA 68
Query: 1093 IQ---ASPIQLAGRQVYIE----ERRPNTGSTS 1118
+ +P + G+ V + +R +G +S
Sbjct: 69 VDYYTTTPALVFGKPVRVHLSQKYKRIKSGPSS 101
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V NLP ++T + EE + FG ++ V + + Y F E+ A
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156
Query: 1096 -SPIQLAGRQVYIE--ERRPNTGSTSRG 1120
L R +Y+ + T +
Sbjct: 157 LLGKPLGPRTLYVHWTDAGQLTPALLHS 184
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ + +R LP VT E+ + ++ FV K AFV +
Sbjct: 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE---LKYCFVDKYK-----GTAFVTLLNGEQ 69
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNT 1114
+ AI A +L R++ ++ + +
Sbjct: 70 AEAAINAFHQSRLRERELSVQLQPTDA 96
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFE-IEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFED 1085
+ + V LP + + F + G +A +E+E
Sbjct: 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP----TFCQLACGQDGQLKGFAVLEYET 235
Query: 1086 ISGVQNAIQA-SPIQLAGRQVYI 1107
+ A Q + L G + +
Sbjct: 236 AEMAEEAQQQADGLSLGGSHLRV 258
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-07
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQN 1091
++ V NL +++E F+ FG I +++ G +AF+ F
Sbjct: 16 ATIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKT--TGQSKGFAFISFHRREDAAR 72
Query: 1092 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1121
AI S + +E +P+T S G
Sbjct: 73 AIAGVSGFGYDHLILNVEWAKPSTNSGPSSG 103
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V+N+P TV+ EI + F + + P V ++ + + A V FE A+
Sbjct: 18 IKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 1096 -SPIQLAGRQVYIE 1108
+ + R+V +
Sbjct: 77 LNDRPIGSRKVKLV 90
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-07
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 1028 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVG--VCYAFVEFED 1085
L + V +R LP T TA E+ F I + G AFV F
Sbjct: 18 LSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFAC 77
Query: 1086 ISGVQNAIQASPIQLAGRQVYIE-------ERRPNTGSTSRGGRRG 1124
QNA++ L R + + ++ N S++ G G
Sbjct: 78 EEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSASGPSSG 123
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-07
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQN 1091
++V+V NL + V + E F G + V KD G + FV F+ V
Sbjct: 17 RTVFVGNLEARVREEILYELFLQAGPL----TKVTICKDREGKPKSFGFVCFKHPESVSY 72
Query: 1092 AIQA-SPIQLAGRQVYI 1107
AI + I+L GR + +
Sbjct: 73 AIALLNGIRLYGRPINV 89
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIK-------PDGVFVRNRKDVVGVCYAFVEFEDISG 1088
V+V NL V +++E F G + DG ++R V FE
Sbjct: 18 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDG---KSR------GIGTVTFEQSIE 68
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1129
AI + L R ++++ +
Sbjct: 69 AVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQSG 110
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 20/107 (18%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEF 1083
D E K+V++RNL + E Q FG +K V + K G AF +F
Sbjct: 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK-YVRVVLHPDTEHSK---G--CAFAQF 64
Query: 1084 EDISGVQNAIQASPIQ-------LAGRQVYIEE--RRPNTGSTSRGG 1121
Q + A+ ++ L GRQ+ ++ R S G
Sbjct: 65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAASGPSSG 111
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Query: 996 QQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQ 1055
++ SS + G G + S D V +R LP T EI + F
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFS 64
Query: 1056 NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108
I P+G+ + + AFV+F + A+ ++ R + +
Sbjct: 65 GLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ VYV ++ + I + F FG IK + + +AFVE+E
Sbjct: 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEA 82
Query: 1089 VQNAIQA-SPIQLAGRQVYI 1107
Q A++ + + L GR + +
Sbjct: 83 AQLALEQMNSVMLGGRNIKV 102
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 1010 VSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN 1069
V + + D L + +YV ++ ++ +I+ F+ FG+IK R+
Sbjct: 102 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-SATLARD 160
Query: 1070 RKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE--ERRPNTGST 1117
Y F+E+E Q+A+ + + L G+ + + P T
Sbjct: 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLT 211
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 18/181 (9%)
Query: 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 380
E+ +KK + + + A + + E++ + GD+ + +
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQS------QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167
Query: 381 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440
+ L C E C G A + L A+ + E + Q GD
Sbjct: 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGD 226
Query: 441 IDGARAAYQLV------HTETSPGL-----LEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
+ + + + H L +I+ A R G DA S YE +
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Query: 490 E 490
E
Sbjct: 287 E 287
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 1006 PESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV 1065
P S P + A+ + +VYV + T ++ + ++ G +
Sbjct: 28 PVRQEPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVEL 87
Query: 1066 FV-------RNRKDVVGVCYAFVEFEDISGVQNAIQASP-IQLAGRQVYIEERRPNTGST 1117
+++ G YA V + V ++ P L G +V + S
Sbjct: 88 KFAENRANGQSK----G--YAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQ 141
Query: 1118 SRGGRRGRGRGSYQTDAPR 1136
R R PR
Sbjct: 142 FEAQARKRE----CVRVPR 156
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGV 1089
E +++ LP + T E+EE + G +K +R + G A+VE+E+ S
Sbjct: 16 EKHKLFISGLPFSCTKEELEEICKAHGTVK----DLRLVTNRAGKPKGLAYVEYENESQA 71
Query: 1090 QNAIQA-SPIQLAGRQ--VYIEERRPNTG 1115
A+ + + V I P++G
Sbjct: 72 SQAVMKMDGMTIKENIIKVAISNSGPSSG 100
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++ NL + + + F FG I +R+ YAF+ F AI+
Sbjct: 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66
Query: 1095 A-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1121
A + L R + + ++ + GS G
Sbjct: 67 AMNGQYLCNRPITVSYAFKKDSKGSGPSSG 96
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-----RNRKDVVGVCYAFVEFEDISGVQ 1090
+Y+R L T ++ + Q +G+I + + + Y FV+F+ S Q
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK------GYGFVDFDSPSAAQ 61
Query: 1091 NAIQA-SPIQLAGRQVYIEERRPNTG 1115
A+ A + + ++ P++G
Sbjct: 62 KAVTALKASGVQAQM--AKQSGPSSG 85
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 3/93 (3%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V V +P + ++ + F + D V + V+F A++
Sbjct: 19 VSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR 75
Query: 1096 SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
+ + + R V + + G
Sbjct: 76 NRMLMIQRYVEVSPATERQWVAAGGHITSGPSS 108
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV---RNRKDVVGVCYAFVEFEDISGVQNA 1092
++++NL ++ + + F FG I V ++ Y FV FE + A
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK------GYGFVHFETQEAAERA 61
Query: 1093 IQA-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1123
I+ + + L R+V++ + + G R
Sbjct: 62 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 93
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFG----RIKPDGVFVRNRKDVVGVC--YAFVEFEDIS 1087
+ ++ NLP VT I+E F+ R+ R + + + EFED+
Sbjct: 20 YTAFLGNLPYDVTEESIKEFFRGLNISAVRL------PREPSNP-ERLKGFGYAEFEDLD 72
Query: 1088 GVQNAIQASPIQLAGRQVYIEERRP 1112
+ +A+ + L R++ ++
Sbjct: 73 SLLSALSLNEESLGNRRIRVDVADQ 97
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 1008 SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV 1067
SG S + + FE V + + +VY + S +T + + F FG+I + V
Sbjct: 3 SGSSGNTKQLRFEDVVNQ---SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EIRV 57
Query: 1068 RNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1121
K Y+FV F +AI + + + G V + + TS
Sbjct: 58 FPEK-----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTSGPS 107
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 1024 DSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVE 1082
LG + GE V +R LP + + +++ + GV ++ AFVE
Sbjct: 8 MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVE 67
Query: 1083 FEDISGVQNAIQASPIQLAGRQVYI-----EERRPNTGSTSRGGRRGRGRG 1128
E V+ A++ + R + + E + G G
Sbjct: 68 LESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSASGPSSG 118
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 1034 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ V + N+ V +++ + G I + + A++ F
Sbjct: 30 QVVLITNINPEVPKEKLQALLYALASSQGDI----LDIVVDLSDDNSGKAYIVFATQESA 85
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1121
Q ++A G + I + G
Sbjct: 86 QAFVEAFQGYPFQGNPLVITFSETPQSQVAEDG 118
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
D V+V +L +T +I+ F FGRI D V++ Y FV F +
Sbjct: 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWD 69
Query: 1089 VQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRGRGSY 1130
+NAIQ L GRQ+ R+P ++ + S
Sbjct: 70 AENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQSGPSS 114
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++++ N+P +V+ +++ F + G + F + + A ++ + A+
Sbjct: 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-----KMALIQMGSVEEAVQAL 175
Query: 1094 QA 1095
Sbjct: 176 ID 177
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 1036 VYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+ V NL P VT + F +G ++ + N+K A V+ D + Q A+
Sbjct: 6 LLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNKK-----ENALVQMADGNQAQLAMS 59
Query: 1095 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRF 1139
+ +L G+ + I + R G+ +G ++P RF
Sbjct: 60 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF 105
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 18/181 (9%)
Query: 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 380
E+ +KK + + + A + + E++ + D+ + +
Sbjct: 91 EDDFKKVLKSNPSEQEEKEAES------QLVKADEMQRLRSQALDAFDGADYTAAITFLD 144
Query: 381 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440
+ L C E C G A + L A+ E + Q GD
Sbjct: 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK-LKSDNTEAFYKISTLYYQLGD 203
Query: 441 IDGARAAYQLV------HTETSPGL-----LEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
+ + + + H L +I+ A R G DA S YE +
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 490 E 490
E
Sbjct: 264 E 264
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V L + ++ FQ FG I V D AFV+F + Q AI A
Sbjct: 18 LFVGMLNKQQSEEDVLRLFQPFGVID--ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75
Query: 1096 ----SPIQLAGRQVYI------EERRPNTG 1115
+ A + + +E P++G
Sbjct: 76 LHGSQTMPGASSSLVVKFADTDKESGPSSG 105
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V+NLP E+ + +++ +V K AFV + QNAIQ
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKY---CYVDRNKR-----TAFVTLLNGEQAQNAIQM 59
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
G+ + + + +P G G
Sbjct: 60 FHQYSFRGKDLIV-QLQPTDALLCSGPSSG 88
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +NLP+ A EI+E F FG + V + A VEF + + A
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLG--RVLLPEGG-----ITAIVEFLEPLEARKAF 63
Query: 1094 QA-SPIQLAGRQVYIE 1108
+ + + +Y+E
Sbjct: 64 RHLAYSKFHHVPLYLE 79
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 6e-06
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
K+++V + T ++ EF+ +G IK V +++ YAF+E+E + +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161
Query: 1094 -QASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDG 1152
A ++ GR+V ++ R T R R G G G + G S D
Sbjct: 162 KHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDE 221
Query: 1153 GDYNRSRGNGFYQRGSQ 1169
+ R +
Sbjct: 222 RPGPSPLPHRDRDRDRE 238
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1093
+Y+ NLP ++ E+E + FG++ + R +D G F E + I
Sbjct: 28 LYISNLPLSMDEQELENMLKPFGQV----ISTRILRDSSGTSRGVGFARMESTEKCEAVI 83
Query: 1094 QA-SPIQLAGRQVYIEERRP 1112
+ + P
Sbjct: 84 GHFNGKFIKTPPGVSAPTEP 103
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 7e-06
Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 2/129 (1%)
Query: 642 GAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPP--ATQAQAQQWNQQAAYGAYSAYGSSY 699
G + + Q+P AAG PP A + QQ A
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 700 PTPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDS 759
T + + P AY +G Q QQ A+ + +
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Query: 760 TESASSMLD 768
+L
Sbjct: 137 QLYPIDLLT 145
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 7e-05
Identities = 17/110 (15%), Positives = 23/110 (20%), Gaps = 5/110 (4%)
Query: 636 MAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAY 695
M+ AQ Y + P P P A Q S
Sbjct: 1 MSHHKKRVYPQAQL---QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG 57
Query: 696 GSSYPTPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQF 745
+ TP Q + + V QP + Q
Sbjct: 58 QQQFLTPAQ--EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 11/104 (10%), Positives = 16/104 (15%)
Query: 641 SGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYP 700
+ P Q V +Q +QQ S
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86
Query: 701 TPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQ 744
P P + Q + Q
Sbjct: 87 NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 2/121 (1%)
Query: 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429
D + + + W+ G A+ R + PE
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVA 61
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
R + A Q ++ +P + + G E A + Y +A +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQA-SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120
Query: 490 E 490
Sbjct: 121 L 121
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 32/146 (21%), Positives = 44/146 (30%), Gaps = 3/146 (2%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418
W D GD +R L +PE R A L +A+
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 419 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
P I L+ E G + A AAY H + P + N RRL +
Sbjct: 86 AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAH-QLLPEEPYITAQLLNWRRRLCDWRA 143
Query: 479 AFSLYEQA-IAIEKGKEHSQTLPMLY 503
L Q A+ +G + L
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 19/208 (9%)
Query: 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497
D + P A + A+ E +G+ ++ +A+ G H +
Sbjct: 2 TADGPRELLQLRAA-VRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPE 58
Query: 498 TLPML--YAQYSRFLHLVSRNAEKARQILVDSLD-HVQL------SKPLLEALIHFE-SI 547
+ L + + ++A + + L + A + +
Sbjct: 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
Query: 548 QSSPKQIDFLEQLVD------KFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIK 601
Q P++ QL++ + + S A + + FL A
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQL 178
Query: 602 KAEDRHARLFLPHRSTSELRKRHAEDFL 629
A+ + ++ L
Sbjct: 179 ACARTRAQAIAASVRPLAPTRVRSKGPL 206
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-06
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+ + LP + T ++ F + +G+ +D A +E E VQ A++
Sbjct: 14 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73
Query: 1095 ASPIQLAGRQVYIE 1108
+ + R Y+E
Sbjct: 74 KHRMYMGQR--YVE 85
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQN 1091
K V L V +++ + +G ++ + + + + A V F G +
Sbjct: 7 KEVTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRT--RKHLGLARVLFTSTRGAKE 63
Query: 1092 AIQA-SPIQLAGRQVYIE 1108
++ + G ++ +
Sbjct: 64 TVKNLHLTSVMGNIIHAQ 81
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-06
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++ V LP +T E F + G I+ VR++ + Y FV + D + AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 1095 A-SPIQLAGRQVYIEERRP 1112
+ ++L + + + RP
Sbjct: 63 TLNGLRLQTKTIKVSYARP 81
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV LP T+T E+E+ F +GRI + + ++ V F+ F+ + AI+
Sbjct: 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149
Query: 1096 ---SPIQLAGRQVYI 1107
A + +
Sbjct: 150 LNGQKPSGATEPITV 164
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ +LP ++ + F FG + VF +++ + C+ FV +++ Q AIQ+
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF-IDKQTNLSKCFGFVSYDNPVSAQAAIQS 86
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSR 1119
+ Q+ +++ ++ +R S S
Sbjct: 87 MNGFQIGMKRLKVQLKRSKNDSKSG 111
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ + K ++V N+P ++ + F FG+I D + N + G + FV FE+ +
Sbjct: 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERGSKG--FGFVTFENSADA 82
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRP 1112
A + + GR++ +
Sbjct: 83 DRAREKLHGTVVEGRKIEVNNATA 106
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 1e-05
Identities = 24/174 (13%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 924 EIPASFQTDVSPVQPPPAPAVEEPVDEPQRKTYASILRVSKSQSTSFVATQPSFTKTAST 983
++ +F + + E P + + + V Q +
Sbjct: 96 KMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155
Query: 984 TSDWNPAPQPTTQQSNYTSSFVPE--SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNL 1041
P P + G + + +++ NL
Sbjct: 156 HMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL 215
Query: 1042 PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
P + F F K + V R D+ AFVEF++ A A
Sbjct: 216 PEETNELMLSMLFNQFPGFK-EVRLVPGRHDI-----AFVEFDNEVQAGAARDA 263
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 18/150 (12%)
Query: 1034 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
++Y+ NL + E+++ F FG+I + + + + AFV F+++S
Sbjct: 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQI----LDILVSRSLKMRGQAFVIFKEVSSA 65
Query: 1090 QNAIQA--------SP--IQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRF 1139
NA+++ P IQ A I + T R R S +T A +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAV 125
Query: 1140 GGRGLGRGSAQDGGDYNRSRGNGFYQRGSQ 1169
G G G R
Sbjct: 126 QGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISGVQ 1090
++V LP T + + F+ FG I+ + V + +R + Y FV D + +
Sbjct: 20 IFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSR-----GYGFVTMADRAAAE 73
Query: 1091 NAIQASPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRGRGS 1129
A + + GR+ + S G G S
Sbjct: 74 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVSGPS 114
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFG----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ YV NLP +I+ F++ R+ D + + G + +VEF+++ +
Sbjct: 16 YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFK----G--FCYVEFDEVDSL 69
Query: 1090 QNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
+ A+ L R + ++ + + G G
Sbjct: 70 KEALTYDGALLGDRSLRVDIAEG-----RKQDKSGPSSG 103
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+ Y+ N+P T ++ FQNFG I K F++++ I
Sbjct: 29 TAYIGNIPHFATEADLIPLFQNFGFIL--DFKHYPEK-----GCCFIKYDTHEQAAVCIV 81
Query: 1095 A 1095
A
Sbjct: 82 A 82
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
K +Y++NL VT ++ F F K AF+ F + A+
Sbjct: 26 KVLYLKNLSPRVTERDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 84
Query: 1094 QA-SPIQLAGRQVYIEE---RRPNTGSTSRG 1120
+ +L G+ + IE ++ + S G
Sbjct: 85 HLVNGYKLYGKILVIEFGKNKKQRSSGPSSG 115
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 1025 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFE 1084
S G + ++V +P E+ E F+ FG + + V + + + + F+ FE
Sbjct: 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFE 60
Query: 1085 DISGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
D V A+ + G++V ++ P S S G G
Sbjct: 61 DEQSVDQAVNMHFHDIMGKKVEVKRAEPR-DSKSSGPSSG 99
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 19/101 (18%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDI 1086
+ +YV L V + F FG I + + ++R G +AFVEFE
Sbjct: 13 RVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHR----G--FAFVEFELA 64
Query: 1087 SGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRG 1126
AI + +L GR + + +P + G
Sbjct: 65 EDAAAAIDNMNESELFGRTIRVNLAKP---MRIKESGPSSG 102
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
V + ++N +T + G+++ +F RN A VEFE + Q A
Sbjct: 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGI------QAMVEFESVLCAQKA 78
Query: 1093 IQAS---PIQLAGRQVYIEERRPNTGSTSRGGRRGR 1125
A I + IE RP + R
Sbjct: 79 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSW 114
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 8/152 (5%)
Query: 971 VATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDE 1030
+ + + P N + + + F++ E
Sbjct: 27 IKLNRNQRRVNRGGGPRRNRPAIARGGRNRPAPYSRPKPLPDKWQHDLFDSGCGGGEGVE 86
Query: 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISG 1088
K + V NL V+ +I+E F FG +K D G A V FE +
Sbjct: 87 TGAK-LLVSNLDFGVSDADIQELFAEFGTLK----KAAVDYDRSGRSLGTADVHFERRAD 141
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSR 1119
A++ + L GR + I+
Sbjct: 142 ALKAMKQYKGVPLDGRPMDIQLVASQIDLEHH 173
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVG--VCYAFVEFEDISGVQN 1091
+ +YV NL +T +++ FQ G I ++ D V YAFVE+
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPI----ANIKIMIDKNNKNVNYAFVEYHQSHDANI 56
Query: 1092 AIQA-SPIQLAGRQVYI 1107
A+Q + Q+ V I
Sbjct: 57 ALQTLNGKQIENNIVKI 73
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 1028 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDIS 1087
+ +++V +L V + F++F V + + + Y FV F
Sbjct: 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQD 140
Query: 1088 GVQNAIQA-SPIQLAGRQVYI 1107
QNA+ + L GR + I
Sbjct: 141 DAQNAMDSMQGQDLNGRPLRI 161
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
G S+++ +L + I F G +RNR + Y FVEF D++
Sbjct: 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLAT 64
Query: 1089 VQNAIQA 1095
+ +
Sbjct: 65 AEKCLHK 71
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDIS 1087
D+G+ +++YV NL VT I + F G K + + Y FVEF +
Sbjct: 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK----SCKMITEHTSNDPYCFVEFYEHR 66
Query: 1088 GVQNAIQA-SPIQLAGRQVYIEERRP----NTGSTS 1118
A+ A + ++ G++V + +G +S
Sbjct: 67 DAAAALAAMNGRKILGKEVKVNWATTPSSQKSGPSS 102
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV-CYAFVEFEDIS 1087
+ V+V LP + EI F+ FG + D K YAF+ F++ S
Sbjct: 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63
Query: 1088 GVQNAIQASPIQLAGRQVYIEERRP 1112
VQ I A + + +
Sbjct: 64 SVQALIDACLEEDGKLYLCVSSPTI 88
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVF----VRNRKDVVGVCYAFVEFEDISGVQN 1091
+YV+NL V +++ F + + +R K+ AF+ +
Sbjct: 48 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 107
Query: 1092 AIQA-SPIQLAGRQVYIEERRPNTGSTSR--GGRR 1123
A++ + L G+ + ++ R G R+
Sbjct: 108 ALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 142
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ V L T ++ E F +G I D V +++ +AFV FE++ + A
Sbjct: 47 CCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105
Query: 1094 QA-SPIQLAGRQVYIEE---RRPN 1113
+ + ++L GR++ ++ +RP+
Sbjct: 106 ERANGMELDGRRIRVDFSITKRPH 129
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFED 1085
+ S+YV +L VT + E+F G I + V R+ + YA+V F+
Sbjct: 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPIL--SIRVCRDMITRRSLGYAYVNFQQ 66
Query: 1086 ISGVQNAIQA-SPIQLAGRQVYI 1107
+ + A+ + + G+ V I
Sbjct: 67 PADAERALDTMNFDVIKGKPVRI 89
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNA 1092
+++++NL ++ + + F FG I V K Y FV FE + A
Sbjct: 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERA 159
Query: 1093 IQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFG 1140
I+ + + L R+V++ + + G R + Y G G
Sbjct: 160 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFYPYDVPDYAGSSG 208
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-----GVCYAFVEFEDISG 1088
+VYV L V+ + E F G + KD V G Y FVEF
Sbjct: 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVN----THMPKDRVTGQHQG--YGFVEFLSEED 69
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
AI+ I+L G+ + + + + G G
Sbjct: 70 ADYAIKIMDMIKLYGKPIRVNKASAHN-KNLSGPSSG 105
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
+ V NL V+ +I+E F FG +K D G A V FE + A+
Sbjct: 38 LLVSNLDFGVSDADIQELFAEFGTLK----KAAVDYDRSGRSLGTADVHFERRADALKAM 93
Query: 1094 QA-SPIQLAGRQVYIEERRPNT 1114
+ + L GR + I+
Sbjct: 94 KQYKGVPLDGRPMDIQLVASQI 115
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISG 1088
+SV+V N+P T ++++ F G + V +R K Y F E++D
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKG-----YGFCEYQDQET 62
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1129
+A++ + + +GR + ++ ++ + G G+
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASE---KNKEELKSLGTGA 101
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDISG 1088
++V L +E+ F +G+I V V R+R G + FV FE+I
Sbjct: 15 LFVGGLSFDTNEQSLEQVFSKYGQIS--EVVVVKDRETQRSR----G--FGFVTFENIDD 66
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGR 1122
++A+ A + + GRQ+ +++ ++ + S
Sbjct: 67 AKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSGPSS 101
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGV 1089
E ++V ++ EI+E+F ++G IK + +R+ G YA VE+E
Sbjct: 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKG--YALVEYETHKQA 127
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1125
A +A + ++ G+ + ++ + + R
Sbjct: 128 LAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRR 164
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ +RN+P + ++ +G ++ N V + + A+
Sbjct: 18 LQIRNIPPHLQWEVLDSLLVQYGVVE--SCEQVNTDSETA--VVNVTYSSKDQARQALDK 73
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 1034 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
++Y+ NL + E+++ F FG+I + + + + AFV F+++S
Sbjct: 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQI----LDILVSRSLKMRGQAFVIFKEVSSA 64
Query: 1090 QNAIQA-SPIQLAGRQVYIE 1108
NA+++ + + I+
Sbjct: 65 TNALRSMQGFPFYDKPMRIQ 84
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-------KPD-GVFVRNRKDVVGVCYAFV 1081
++++NL + T ++ F G I K + + + + FV
Sbjct: 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSM------GFGFV 55
Query: 1082 EFEDISGVQNAIQA-SPIQLAGRQVYIE--ERRPNTGSTSRGG 1121
E++ Q A++ + G ++ + ER S G
Sbjct: 56 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPASGPSSG 98
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 989 PAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAF 1048
+ S + ++ D + S+ V NL +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPD 62
Query: 1049 EIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100
+ F+ +GR+ V++ +R G +AFV F D ++A+ A L
Sbjct: 63 TLRRVFEKYGRVG--DVYIPRDRYTKESR----G--FAFVRFHDKRDAEDAMDAMDGAVL 114
Query: 1101 AGRQVYIEERRPN 1113
GR++ ++ R
Sbjct: 115 DGRELRVQMARYG 127
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++ N P VT E G +P V V + K +E++ S +
Sbjct: 126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERS-SSGLLEWDSKSDALETLGF 184
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 9e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ V + V NL VT + + F FG + F +N + A +++ D
Sbjct: 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ-----FQALLQYADPVSA 97
Query: 1090 QNAIQAS 1096
Q+A +
Sbjct: 98 QHAKLSL 104
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDI 1086
+YV +L +T + F+ FG+I + + R++ G Y F+ F D
Sbjct: 6 SGLYVGSLHFNITEDMLRGIFEPFGKID--NIVLMKDSDTGRSK----G--YGFITFSDS 57
Query: 1087 SGVQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1121
+ A++ + +LAGR + + R + GS G
Sbjct: 58 ECARRALEQLNGFELAGRPMRVGHVTERLDGGSGPSSG 95
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-05
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
G V+V +L +T I F FGRI D V++ Y FV F +
Sbjct: 2 PLGSHFHVFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWD 60
Query: 1089 VQNAIQA-SPIQLAGRQVYIEE--RRP 1112
+NAIQ L GRQ+ R+P
Sbjct: 61 AENAIQQMGGQWLGGRQIRTNWATRKP 87
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 9e-05
Identities = 31/203 (15%), Positives = 69/203 (33%), Gaps = 14/203 (6%)
Query: 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416
++ +N + G+ + V+LY + L + ++ G + A A
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476
+ + + ++ D+ GA Y + +P +A A++ + GN+
Sbjct: 70 IRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHKDSGNI 127
Query: 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA------EKARQILVDSLDH 530
+A + Y A+ ++ P Y + L +V +K I+ D L+
Sbjct: 128 PEAIASYRTALKLKPD------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 531 VQLSKPLLEALIHFESIQSSPKQ 553
+L + + K
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKA 204
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 1025 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFE 1084
S G+ + + +++ +P + +++ F+ FG+I + +++R + AF+ +
Sbjct: 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYC 63
Query: 1085 DISGVQNAIQA----SPIQLAGRQV---YIEERRPNTGSTSRG 1120
+ A A + R + + S G
Sbjct: 64 ERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSGPSSG 106
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 20/120 (16%)
Query: 992 QPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIE 1051
P + + S + + +YV L V +
Sbjct: 30 LPESVAYTCVNCTERHVDGGSGGSGGSGGSATTK--------RVLYVGGLAEEVDDKVLH 81
Query: 1052 EEFQNFGRIKPDGVFVRNRKDVV-----GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1105
F FG I ++ D G +AFVEFE AI + +L GR +
Sbjct: 82 AAFIPFGDI----TDIQIPLDYETEKHRG--FAFVEFELAEDAAAAIDNMNESELFGRTI 135
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-----RNRKDVVGVCYAFVEFEDISGVQ 1090
+++ +LP T ++ F FG + VF+ ++ C+ FV F++ Q
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSK------CFGFVSFDNPDSAQ 96
Query: 1091 NAIQA-SPIQLAGRQVYIEERR 1111
AI+A + Q+ +++ ++ ++
Sbjct: 97 VAIKAMNGFQVGTKRLKVQLKK 118
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV-FVRNR-----KDVVGVCYAFVEFEDISG 1088
++Y+ NL T ++ E + G + F NR K G +A V +
Sbjct: 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK---G--FALVGVGSEAS 57
Query: 1089 VQNAIQASP-IQLAGRQVYIEERRPNTGSTSR 1119
+ + P +L G+ +
Sbjct: 58 SKKLMDLLPKRELHGQNPVVTPSNKLEHHHHH 89
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
K+++V+ L T ++E F R + D ++ G + FV+F
Sbjct: 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSK----G--FGFVDFNSEEDA 67
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGR 1122
+ A +A ++ G +V ++ +P S
Sbjct: 68 KAAKEAMEDGEIDGNKVTLDWAKPKGEGGSGPSS 101
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 16/170 (9%)
Query: 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 383
++ E + A+ + +NY F+ + + +
Sbjct: 81 FQTEMEPKLADEEYRKALA-----SDSRNA---RVLNNYGGFLYEQKRYEEAYQRLLEA- 131
Query: 384 IACANYPEYWIRYV---LCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAARFKEQNG 439
YPE + L A ++ + + P + L A +
Sbjct: 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS--LRLNRNQPSVALEMADLLYKER 189
Query: 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
+ AR Y L + +++ + + + + A S Q +
Sbjct: 190 EYVPARQYYDLFA-QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Query: 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 414
+++ ++Y G + + I +Y + + A + A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94
Query: 415 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451
A + + + + A+ ++LV
Sbjct: 95 VAFALGKND-YTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V+V +T E+ E F +G + D + + +AFV F D Q+
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKPFR-----AFAFVTFADDQIAQSLCGE 61
Query: 1096 SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
I + G V+I P +++ G G
Sbjct: 62 DLI-IKGISVHISNAEPK-HNSNSGPSSG 88
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDI 1086
+ V L T ++ E F +G I V + R+R +AFV FE++
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPI--ADVSIVYDQQSRRSR------GFAFVYFENV 67
Query: 1087 SGVQNAIQA-SPIQLAGRQVYIEERR 1111
+ A + + ++L GR++ +
Sbjct: 68 DDAKEAKERANGMELDGRRIRVSGPS 93
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISG 1088
+ VY+ ++P T +I + N G + + + + K G YAF+EF D+
Sbjct: 3 RVVYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSK---G--YAFIEFRDLES 56
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1125
+A++ + QL R + + S
Sbjct: 57 SASAVRNLNGYQLGSRFLKCGYSSNSDISGVSLEHHHH 94
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 1008 SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV 1067
S ++S LG + GE V +R LP + + +++ + I V
Sbjct: 19 SHMASMTGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCT-IHDGAAGV 77
Query: 1068 RNRKDVVGVC--YAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108
G AFVE V+ A++ + R + +
Sbjct: 78 HFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
+ V NL V+ +I+E F FG +K D G A V FE + A+
Sbjct: 32 LLVSNLDFGVSDADIQELFAEFGTLK----KAAVHYDRSGRSLGTADVHFERKADALKAM 87
Query: 1094 QA-SPIQLAGRQVYIE 1108
+ + + L GR + I+
Sbjct: 88 KQYNGVPLDGRPMNIQ 103
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQNAI 1093
++V NLP+ +T + + F+ +G VF+ R+R + F+ E + + A
Sbjct: 24 RLFVGNLPTDITEEDFKRLFERYGEPS--EVFINRDR------GFGFIRLESRTLAEIAK 75
Query: 1094 QA-SPIQLAGRQVYIEERRPNT 1114
L R + I
Sbjct: 76 AELDGTILKSRPLRIRFATHGA 97
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1093
+ V+NL V+ +E+ F FG ++ V V D G FVEF + A+
Sbjct: 99 LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV----DDRGRATGKGFVEFAAKPPARKAL 154
Query: 1094 QA-----SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQ 1131
+ + R V +E + + Y
Sbjct: 155 ERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYH 197
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV +T + F FG I + + + AFV +E + A+
Sbjct: 18 LYVYGE--DMTPTLLRGAFSPFGNII--DLSMDPPR-----NCAFVTYEKMESADQAVAE 68
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGG 1121
+ Q+ Q+ + R S
Sbjct: 69 LNGTQVESVQLKVNIARKQPMLDSGPS 95
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+++V +L V + F++F G + + + Y FV F QNA+
Sbjct: 3 NLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61
Query: 1095 A-SPIQLAGRQVYIEE--RRPN 1113
+ L GR + I + +
Sbjct: 62 SMQGQDLNGRPLRINWAAKLEH 83
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ ++NLP + ++ ++ R + +EF + A++
Sbjct: 31 ITMKNLPEGCS----WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86
Query: 1096 -SPIQLAGRQVYIEERRP 1112
+ I+ G + +E
Sbjct: 87 LNNIEFRGSVITVERDDN 104
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIK-----PDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ +YV L V + F FG I D ++R G +AFVEFE
Sbjct: 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR----G--FAFVEFELAED 61
Query: 1089 VQNAIQA-SPIQLAGRQV 1105
AI + +L GR +
Sbjct: 62 AAAAIDNMNESELFGRTI 79
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFED 1085
++++YV NL + T+ +++E F FG++ V + + + + FVE ++
Sbjct: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVF--NVKLIYDRETKKPK------GFGFVEMQE 52
Query: 1086 ISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGR 1127
V AI GR + + E P +
Sbjct: 53 -ESVSEAIAKLDNTDFMGRTIRVTEANP------KKSLEHHHH 88
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISG 1088
+VYV NLP ++T ++ F +G++ ++++ K G AF+ F D
Sbjct: 17 STVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSK---G--VAFILFLDKDS 70
Query: 1089 VQNAIQA-SPIQLAGRQV 1105
QN +A + QL GR +
Sbjct: 71 AQNCTRAINNKQLFGRVI 88
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429
G + V + + + + E + + + S LA A
Sbjct: 18 GQNGQAVSYFRQTIALNIDRTEMYY-WTNVDKNSEISSKLATELALAYK----------- 65
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
+N + D A Y+ + + +P ++ + A M+ G +DA +YE+ + +
Sbjct: 66 -------KNRNYDKAYLFYKEL-LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 490 E 490
E
Sbjct: 118 E 118
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 1005 VPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG 1064
V ++ + +A G + V + V NL VT + + F FG +
Sbjct: 2 VQSGNLALAASAAAVDAGMAMAG--QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 59
Query: 1065 VFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS 1096
F +N + A +++ D Q+A +
Sbjct: 60 TFTKNNQ-----FQALLQYADPVSAQHAKLSL 86
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGVQNA 1092
++V + T +I ++F +G IK + +R+ + G Y VE+E Q A
Sbjct: 25 ILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKG--YTLVEYETYKEAQAA 81
Query: 1093 IQA-SPIQLAGRQVYIEERRP 1112
++ + L G+ + ++
Sbjct: 82 MEGLNGQDLMGQPISVDWCFV 102
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 77 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ L T + E F FG +K + + +R+ + FV F D +GV +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 1096 SPIQLAGRQV 1105
S +L + +
Sbjct: 62 SRHELDSKTI 71
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGV 1089
E ++V ++ EI+E+F ++G IK + +R+ G YA VE+E
Sbjct: 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKG--YALVEYETHKQA 81
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRP 1112
A +A + ++ G+ + ++
Sbjct: 82 LAAKEALNGAEIMGQTIQVDWCFV 105
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNA 1092
S+ V NL + + F+ +GR+ D R+R K+ G +AFV F D ++A
Sbjct: 72 SLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRG--FAFVRFHDKRDAEDA 128
Query: 1093 IQA-SPIQLAGRQVYIEE---RRPNTGSTS 1118
+ A L GR++ ++ RP S
Sbjct: 129 MDAMDGAVLDGRELRVQMARYGRPPDSHHS 158
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V L +I E F FG ++ + K + F+ F++ V+ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 1096 SPIQLAGRQV 1105
+ +
Sbjct: 61 KYHNVGLSKC 70
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 9e-04
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV---RNRKDVVGVCYAFVEFEDISGVQNA 1092
+YV+NL + + + F FG I V + R++ + FV F A
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSK------GFGFVCFSSPEEATKA 71
Query: 1093 IQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1121
+ + +A + +Y+ R+ S G
Sbjct: 72 VTEMNGRIVATKPLYVALAQRKEERQSGPSSG 103
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1169 | |||
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 100.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 100.0 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 3q90_A | 140 | RAS GTPase-activating protein-binding protein 1; s | 99.97 | |
| 3ujm_A | 120 | Rasputin; NTF2-like fold, RAS signaling, signaling | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 1gy6_A | 127 | Nuclear transport factor 2; 1.6A {Rattus norvegicu | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 1zo2_A | 129 | NTF2, nuclear transport factor 2; structural genom | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3nv0_B | 154 | NTF2-related export protein; NTF2-like domain, bet | 99.95 | |
| 1gy7_A | 125 | Nuclear transport factor 2; protein transport; 1.6 | 99.95 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.95 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2qiy_A | 154 | UBP3-associated protein BRE5; deubiquitylation, ub | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 1jkg_A | 140 | P15; NTF2-like domain, transport protein; 1.90A {H | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.76 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.7 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.69 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 1of5_A | 221 | MRNA export factor MEX67; nuclear protein, repeat, | 99.68 | |
| 1jkg_B | 250 | TAP; NTF2-like domain, transport protein; 1.90A {H | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 1h2v_Z | 156 | 20 kDa nuclear CAP binding protein; CAP-binding-co | 99.68 | |
| 3q2s_C | 229 | Cleavage and polyadenylation specificity factor S; | 99.68 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 1u6f_A | 139 | Tcubp1, RNA-binding protein UBP1; trypanosome, mRN | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 4fxv_A | 99 | ELAV-like protein 1; RNA recognition motif, putati | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 1q40_B | 219 | MEX67, mRNA export factor MEX67; NTF2-fold, nuclea | 99.65 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2dgs_A | 99 | DAZ-associated protein 1; RRM domain, structural g | 99.62 | |
| 2lxi_A | 91 | RNA-binding protein 10; NMR {Homo sapiens} | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.6 | |
| 1whw_A | 99 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2cqd_A | 116 | RNA-binding region containing protein 1; RNA recog | 99.6 | |
| 1x5t_A | 96 | Splicing factor 3B subunit 4; structure genomics, | 99.6 | |
| 3s8s_A | 110 | Histone-lysine N-methyltransferase SETD1A; chromat | 99.59 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.59 | |
| 2dnz_A | 95 | Probable RNA-binding protein 23; RNA recognition m | 99.59 | |
| 1x4b_A | 116 | Heterogeneous nuclear ribonucleoproteins A2/B1; st | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.58 | |
| 2dng_A | 103 | Eukaryotic translation initiation factor 4H; RRM d | 99.58 | |
| 3ex7_B | 126 | RNA-binding protein 8A; protein-RNA complex, mRNA | 99.58 | |
| 2cpz_A | 115 | CUG triplet repeat RNA-binding protein 1; RRM doma | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2cq0_A | 103 | Eukaryotic translation initiation factor 3 subunit | 99.58 | |
| 2fy1_A | 116 | RNA-binding motif protein, Y chromosome, family 1 | 99.57 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.57 | |
| 1x5u_A | 105 | Splicing factor 3B subunit 4 (spliceosome associat | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2dh8_A | 105 | DAZ-associated protein 1; RRM domain, structural g | 99.57 | |
| 2cqb_A | 102 | Peptidyl-prolyl CIS-trans isomerase E; RNA recogni | 99.56 | |
| 2dgo_A | 115 | Cytotoxic granule-associated RNA binding protein 1 | 99.56 | |
| 2dnm_A | 103 | SRP46 splicing factor; RRM domain, RBD, structural | 99.56 | |
| 1wi8_A | 104 | EIF-4B, eukaryotic translation initiation factor 4 | 99.56 | |
| 3s7r_A | 87 | Heterogeneous nuclear ribonucleoprotein A/B; ferre | 99.56 | |
| 2lkz_A | 95 | RNA-binding protein 5; RRM; NMR {Homo sapiens} | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 1x4a_A | 109 | Splicing factor, arginine/serine-rich 1 (splicing | 99.55 | |
| 1x4h_A | 111 | RNA-binding protein 28; structural genomics, RRM d | 99.55 | |
| 1x5s_A | 102 | Cold-inducible RNA-binding protein; structure geno | 99.55 | |
| 2jwn_A | 124 | Embryonic polyadenylate-binding protein 2-B; epabp | 99.55 | |
| 1wez_A | 102 | HnRNP H', FTP-3, heterogeneous nuclear ribonucleop | 99.55 | |
| 2cpe_A | 113 | RNA-binding protein EWS; RNA recognition motif, RR | 99.55 | |
| 3bs9_A | 87 | Nucleolysin TIA-1 isoform P40; RNA recognition mot | 99.55 | |
| 2khc_A | 118 | Testis-specific RNP-type RNA binding protein; RRM, | 99.55 | |
| 3md1_A | 83 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.54 | |
| 3ucg_A | 89 | Polyadenylate-binding protein 2; ferredoxin-like, | 99.54 | |
| 2cqg_A | 103 | TDP-43, TAR DNA-binding protein-43; RNA recognitio | 99.54 | |
| 3mdf_A | 85 | Peptidyl-prolyl CIS-trans isomerase E; RRM domain, | 99.54 | |
| 1s79_A | 103 | Lupus LA protein; RRM, alpha/beta, RNA binding pro | 99.54 | |
| 2rs2_A | 109 | Musashi-1, RNA-binding protein musashi homolog 1; | 99.54 | |
| 2dgp_A | 106 | Bruno-like 4, RNA binding protein; RRM domain, str | 99.54 | |
| 2cq4_A | 114 | RNA binding motif protein 23; RRM domain, structur | 99.54 | |
| 1x4c_A | 108 | Splicing factor, arginine/serine-rich 1; structura | 99.54 | |
| 2cph_A | 107 | RNA binding motif protein 19; RNA recognition moti | 99.54 | |
| 2x1f_A | 96 | MRNA 3'-END-processing protein RNA15; transcriptio | 99.54 | |
| 2d9p_A | 103 | Polyadenylate-binding protein 3; RRM domain, struc | 99.53 | |
| 2jrs_A | 108 | RNA-binding protein 39; RNA binding motif of RBM39 | 99.53 | |
| 2do4_A | 100 | Squamous cell carcinoma antigen recognized by T- c | 99.53 | |
| 2cpf_A | 98 | RNA binding motif protein 19; RNA recognition moti | 99.52 | |
| 2e5h_A | 94 | Zinc finger CCHC-type and RNA-binding motif- conta | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 2dnh_A | 105 | Bruno-like 5, RNA binding protein; RRM domain, RBD | 99.52 | |
| 1oo0_B | 110 | CG8781-PA, drosophila Y14; RNA recognition motif, | 99.52 | |
| 1p27_B | 106 | RNA-binding protein 8A; nuclear protein, mRNA spli | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 3n9u_C | 156 | Cleavage and polyadenylation specificity factor S; | 99.52 | |
| 3p5t_L | 90 | Cleavage and polyadenylation specificity factor S; | 99.52 | |
| 2dhg_A | 104 | TRNA selenocysteine associated protein (SECP43); R | 99.52 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.51 | |
| 3ns6_A | 100 | Eukaryotic translation initiation factor 3 subuni; | 99.51 | |
| 2cpy_A | 114 | RNA-binding protein 12; RRM domain, structural gen | 99.51 | |
| 2dgu_A | 103 | Heterogeneous nuclear ribonucleoprotein Q; RRM dom | 99.51 | |
| 2cqc_A | 95 | Arginine/serine-rich splicing factor 10; RNA recog | 99.51 | |
| 2cqp_A | 98 | RNA-binding protein 12; RNA recognition motif, RRM | 99.51 | |
| 4f25_A | 115 | Polyadenylate-binding protein 1; RRM fold, transla | 99.51 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.51 | |
| 2div_A | 99 | TRNA selenocysteine associated protein; structural | 99.51 | |
| 2cqi_A | 103 | Nucleolysin TIAR; RNA recognition motif, RRM, RNA | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.5 | |
| 2la6_A | 99 | RNA-binding protein FUS; structural genomics, nort | 99.5 | |
| 2cq3_A | 103 | RNA-binding protein 9; RRM domain, structural geno | 99.5 | |
| 1sjq_A | 105 | Polypyrimidine tract-binding protein 1; babbab mot | 99.5 | |
| 2j76_E | 100 | EIF-4B, EIF4B, eukaryotic translation initiation f | 99.5 | |
| 2mss_A | 75 | Protein (musashi1); RNA-binding domain, RNA bindin | 99.49 | |
| 2dgw_A | 91 | Probable RNA-binding protein 19; RRM domain, struc | 99.49 | |
| 2m2b_A | 131 | RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio | 99.49 | |
| 1wg5_A | 104 | Heterogeneous nuclear ribonucleoprotein H; structu | 99.49 | |
| 2dgv_A | 92 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.49 | |
| 2dnq_A | 90 | RNA-binding protein 4B; RRM domain,RBD, structural | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 4a8x_A | 88 | RNA-binding protein with serine-rich domain 1; tra | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.48 | |
| 2fc8_A | 102 | NCL protein; structure genomics, RRM_1 domain, str | 99.48 | |
| 2dgx_A | 96 | KIAA0430 protein; RRM domain, structural genomics, | 99.48 | |
| 2ywk_A | 95 | Putative RNA-binding protein 11; RRM-domain, struc | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 2hgn_A | 139 | Heterogeneous nuclear ribonucleoprotein F; RNA rec | 99.47 | |
| 2fc9_A | 101 | NCL protein; structure genomics, RRM_1 domain, str | 99.47 | |
| 2kxn_B | 129 | Transformer-2 protein homolog beta; SR protein, RR | 99.47 | |
| 2lcw_A | 116 | RNA-binding protein FUS; RRM, nucleic acid binding | 99.21 | |
| 3r27_A | 100 | HnRNP L, heterogeneous nuclear ribonucleoprotein L | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 3beg_B | 115 | Splicing factor, arginine/serine-rich 1; kinase, S | 99.47 | |
| 2wbr_A | 89 | GW182, gawky, LD47780P; DNA-binding protein, RRM, | 99.47 | |
| 1rk8_A | 165 | CG8781-PA, CG8781-PA protein; mRNA processing, RRM | 99.47 | |
| 2dgt_A | 92 | RNA-binding protein 30; RRM domain, structural gen | 99.47 | |
| 2cpx_A | 115 | Hypothetical protein FLJ11016; RRM domain, structu | 99.47 | |
| 2do0_A | 114 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.47 | |
| 1fj7_A | 101 | Nucleolin RBD1, protein C23; RNP, RRM, RNA binding | 99.46 | |
| 2kvi_A | 96 | Nuclear polyadenylated RNA-binding protein 3; RNA- | 99.46 | |
| 1wel_A | 124 | RNA-binding protein 12; structural genomics, NPPSF | 99.46 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.46 | |
| 1p1t_A | 104 | Cleavage stimulation factor, 64 kDa subunit; RNA r | 99.46 | |
| 2dis_A | 109 | Unnamed protein product; structural genomics, RRM | 99.46 | |
| 2err_A | 109 | Ataxin-2-binding protein 1; protein-RNA complex, R | 99.46 | |
| 2ek1_A | 95 | RNA-binding protein 12; RNA recognition motif, dim | 99.46 | |
| 2cq1_A | 101 | PTB-like protein L; RRM domain, structural genomic | 99.45 | |
| 2dnn_A | 109 | RNA-binding protein 12; RRM domain, RBD, structura | 99.45 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.45 | |
| 3ulh_A | 107 | THO complex subunit 4; nuclear protein, RNA bindin | 99.45 | |
| 1iqt_A | 75 | AUF1, heterogeneous nuclear ribonucleoprotein D0; | 99.45 | |
| 2nlw_A | 105 | Eukaryotic translation initiation factor 3 subunit | 99.45 | |
| 1uaw_A | 77 | Mouse-musashi-1; RNP-type structure, RNA binding p | 99.44 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 99.44 | |
| 2ad9_A | 119 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.44 | |
| 1x4d_A | 102 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.44 | |
| 2db1_A | 118 | Heterogeneous nuclear ribonucleoprotein F; RRM dom | 99.44 | |
| 2lea_A | 135 | Serine/arginine-rich splicing factor 2; SR protein | 99.44 | |
| 2cpi_A | 111 | CCR4-NOT transcription complex subunit 4; RNA reco | 99.44 | |
| 2jvr_A | 111 | Nucleolar protein 3; RNA recognition motif, nucleu | 99.44 | |
| 2cpd_A | 99 | Apobec-1 stimulating protein; RNA recognition moti | 99.44 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 2hgl_A | 136 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.43 | |
| 1fjc_A | 96 | Nucleolin RBD2, protein C23; RNP, RRM, RNA binding | 99.43 | |
| 1x4e_A | 85 | RNA binding motif, single-stranded interacting pro | 99.43 | |
| 2kt5_A | 124 | RNA and export factor-binding protein 2; chaperone | 99.43 | |
| 2e5j_A | 97 | Methenyltetrahydrofolate synthetase domain contain | 99.43 | |
| 2dnp_A | 90 | RNA-binding protein 14; RRM domain, RBD, structura | 99.43 | |
| 2a3j_A | 127 | U1 small nuclear ribonucleoprotein A; computationa | 99.43 | |
| 2xs2_A | 102 | Deleted in azoospermia-like; RNA binding protein-R | 99.43 | |
| 2cqh_A | 93 | IGF-II mRNA-binding protein 2 isoform A; RNA recog | 99.42 | |
| 1x4f_A | 112 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.42 | |
| 3nv0_A | 205 | Nuclear RNA export factor 2; NTF2-like domain, bet | 99.42 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.42 | |
| 1wex_A | 104 | Hypothetical protein (riken cDNA 2810036L13); stru | 99.42 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 99.42 | |
| 2krb_A | 81 | Eukaryotic translation initiation factor 3 subunit | 99.42 | |
| 1x5o_A | 114 | RNA binding motif, single-stranded interacting pro | 99.42 | |
| 2ki2_A | 90 | SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA | 99.42 | |
| 1wf1_A | 110 | RNA-binding protein RALY; structural genomics, RRM | 99.41 | |
| 2lmi_A | 107 | GRSF-1, G-rich sequence factor 1; G-rich RNA seque | 99.41 | |
| 2e5g_A | 94 | U6 snRNA-specific terminal uridylyltransferase 1; | 99.41 | |
| 2xnq_A | 97 | Nuclear polyadenylated RNA-binding protein 3; tran | 99.4 | |
| 2hvz_A | 101 | Splicing factor, arginine/serine-rich 7; RRM, RNA | 99.4 | |
| 2dha_A | 123 | FLJ20171 protein; RRM domain, structural genomics, | 99.4 | |
| 1x4g_A | 109 | Nucleolysin TIAR; structural genomics, RRM domain, | 99.4 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.4 | |
| 1nu4_A | 97 | U1A RNA binding domain; RNA recognition motif, U1 | 99.4 | |
| 2cpj_A | 99 | Non-POU domain-containing octamer-binding protein; | 99.4 | |
| 2la4_A | 101 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.39 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.39 | |
| 2jvo_A | 108 | Nucleolar protein 3; nucleus, phosphorylation, rib | 99.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 1x5p_A | 97 | Negative elongation factor E; structure genomics, | 99.38 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 2hgm_A | 126 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 1why_A | 97 | Hypothetical protein riken cDNA 1810017N16; RNA re | 99.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.37 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.37 | |
| 2ytc_A | 85 | PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s | 99.37 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.37 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.36 | |
| 2j8a_A | 136 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.36 | |
| 3d2w_A | 89 | TAR DNA-binding protein 43; DP-43 proteinopathy, T | 99.36 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.35 | |
| 1wf0_A | 88 | TDP-43, TAR DNA-binding protein-43; structural gen | 99.34 | |
| 1whx_A | 111 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.33 | |
| 3lqv_A | 115 | PRE-mRNA branch site protein P14; cysless mutant, | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.32 | |
| 3egn_A | 143 | RNA-binding protein 40; RNA recognition motif (RRM | 99.32 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.31 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.31 | |
| 1sjr_A | 164 | Polypyrimidine tract-binding protein 1; extended b | 99.31 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.31 | |
| 2cq2_A | 114 | Hypothetical protein LOC91801; RRM domain, structu | 99.31 | |
| 2f3j_A | 177 | RNA and export factor binding protein 2; RRM domai | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.3 | |
| 2e44_A | 96 | Insulin-like growth factor 2 mRNA binding protein | 99.3 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.3 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 99.29 | |
| 3zzy_A | 130 | Polypyrimidine tract-binding protein 1; protein bi | 99.29 | |
| 2diu_A | 96 | KIAA0430 protein; structural genomics, RRM domain, | 99.28 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.28 | |
| 1wg1_A | 88 | KIAA1579 protein, homolog EXC-7; RBD, structural g | 99.28 | |
| 2dnl_A | 114 | Cytoplasmic polyadenylation element binding protei | 99.28 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.28 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.27 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.27 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.27 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.26 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 2voo_A | 193 | Lupus LA protein; RNA-binding protein, RNA recogni | 99.25 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.23 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.23 | |
| 2hzc_A | 87 | Splicing factor U2AF 65 kDa subunit; RNA splicing, | 99.23 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.23 | |
| 2e5i_A | 124 | Heterogeneous nuclear ribonucleoprotein L-like; RR | 99.22 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.22 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.21 | |
| 2bz2_A | 121 | Negative elongation factor E; NELF E, RNA recognit | 99.21 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.2 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.2 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.2 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.19 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.19 | |
| 2pe8_A | 105 | Splicing factor 45; RRM, protein binding; 2.00A {H | 99.18 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.17 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.16 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.16 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.15 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.15 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.15 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.14 | |
| 1q42_A | 201 | MTR2, mRNA transport regulator MTR2; NTF2-fold, nu | 99.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.14 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.14 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.13 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.12 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.12 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.11 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.11 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.1 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.09 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.09 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.08 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 99.08 | |
| 2d9o_A | 100 | DNAJ (HSP40) homolog, subfamily C, member 17; RRM | 99.08 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.06 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.06 | |
| 2dit_A | 112 | HIV TAT specific factor 1 variant; structural geno | 99.06 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.06 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.05 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.05 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.02 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.01 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.01 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.01 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.01 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.01 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.0 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.0 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 98.99 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 98.99 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.97 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 98.97 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 98.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.95 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.95 | |
| 3v4m_A | 105 | Splicing factor U2AF 65 kDa subunit; canonical RNA | 98.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.94 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.93 | |
| 1jmt_A | 104 | Splicing factor U2AF 35 kDa subunit; RRM, RNA spli | 98.93 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 98.91 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.91 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 98.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.91 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.91 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.9 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 98.9 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.9 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.89 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.89 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.89 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.89 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.89 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.88 | |
| 3ue2_A | 118 | Poly(U)-binding-splicing factor PUF60; RNA recogni | 98.88 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.88 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 98.87 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 98.87 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.82 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.82 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.81 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.76 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.75 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.75 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.75 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.74 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 3tht_A | 345 | Alkylated DNA repair protein ALKB homolog 8; struc | 98.72 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.71 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.66 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.66 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.64 | |
| 2dnr_A | 91 | Synaptojanin-1; RRM domain, RBD, structural genomi | 98.63 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.62 | |
| 3s6e_A | 114 | RNA-binding protein 39; ferredoxin-like, structura | 98.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.58 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.54 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.53 | |
| 1owx_A | 121 | Lupus LA protein, SS-B, LA; RRM, transcription; NM | 98.52 | |
| 1of5_B | 184 | MTR2, YKL186C, mRNA transport regulator MTR2; nucl | 98.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.39 | |
| 1ufw_A | 95 | Synaptojanin 2; RNP domain, structural genomics, r | 98.29 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.22 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.98 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.89 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.79 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.76 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.62 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.55 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.42 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.41 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.35 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.32 | |
| 2l9w_A | 117 | U4/U6 snRNA-associated-splicing factor PRP24; RRM, | 97.29 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.26 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.6 | |
| 2dhx_A | 104 | Poly (ADP-ribose) polymerase family, member 10 var | 96.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.85 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.55 | |
| 1wwh_A | 119 | Nucleoporin 35, nucleoporin; structural genomics, | 94.82 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.45 | |
| 3p3d_A | 132 | Nucleoporin 53; structural genomics, PSI-2, protei | 94.33 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.8 | |
| 1whv_A | 100 | Poly(A)-specific ribonuclease; RNA recognition mot | 93.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.5 | |
| 3hx8_A | 129 | MLR2180 protein, putative ketosteroid isomerase; s | 93.39 | |
| 1wey_A | 104 | Calcipressin 1; structural genomics, RRM domain, r | 93.18 | |
| 4i4k_A | 143 | Uncharacterized protein SGCJ; structural genomics, | 93.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.02 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.95 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.88 | |
| 3ctr_A | 101 | Poly(A)-specific ribonuclease PARN; protein-RNA-co | 92.79 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.54 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.17 | |
| 1uw4_A | 91 | UPF3X; nonsense mediated mRNA decay protein, RNA-b | 92.12 | |
| 3pq1_A | 464 | Poly(A) RNA polymerase; nucleotidyl transferase, R | 91.69 | |
| 3gzr_A | 146 | Uncharacterized protein with A NTF2-like fold; str | 91.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.89 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.44 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.41 | |
| 3d9r_A | 135 | Ketosteroid isomerase-like protein; YP_049581.1, s | 90.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.36 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.32 | |
| 3cu3_A | 172 | Domain of unknown function with A cystatin-like F; | 88.96 | |
| 3gwr_A | 144 | Putative calcium/calmodulin-dependent protein KIN | 87.4 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.05 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.69 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.0 | |
| 3h51_A | 156 | Putative calcium/calmodulin dependent protein KIN | 83.85 | |
| 2l08_A | 97 | Regulator of nonsense transcripts 3A; NESG, nonsen | 83.24 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.03 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 81.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 80.58 |
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=503.23 Aligned_cols=483 Identities=14% Similarity=0.200 Sum_probs=397.4
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHH
Q 001060 82 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---MDKVVEVY 158 (1169)
Q Consensus 82 ~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---~e~A~~l~ 158 (1169)
...+..|++.|..||.|++.|..|++.+++. +.++.+|.+|+++|..||.+..+|++|+++|++.++ +++++++|
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3678899999999999999999999999874 599999999999999999999999999999999999 99999999
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHH---------
Q 001060 159 ERAVQGVT--YSVDIWLHYCIFAINTYGD-------PETIRRLFERGLAYVGT-DYLSFPLWDKYIEYEYM--------- 219 (1169)
Q Consensus 159 eraL~~~P--~s~~lw~~y~~~~~~~~~~-------~e~Ar~~~erAl~~~g~-d~~s~~lw~~y~~~e~~--------- 219 (1169)
+|||..+| .+++||..|+.|.....+. .+.+|++|++||..+|. |+.+..||..|++|+..
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999994 7999999999999843322 25677999999999999 99999999999999873
Q ss_pred hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccccc
Q 001060 220 QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 299 (1169)
Q Consensus 220 ~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 299 (1169)
++++++++.||+|+|.+|..+++.+|..|..|+...+ .. +.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~--~~-~a------------------------------------ 247 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN--QL-TA------------------------------------ 247 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC--TT-TH------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC--cc-hH------------------------------------
Confidence 5678999999999999999999999999999854321 00 00
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc------------CCCChhcHHHHHHHHHHHH
Q 001060 300 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV------------KPLSVTELENWHNYLDFIE 367 (1169)
Q Consensus 300 ~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v------------~pl~~~~~~~W~~yl~~~~ 367 (1169)
++++..+...|..+......+..+.+.|.|.+.+. .+.+..++.+|..|++|++
T Consensus 248 --------------~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk 313 (679)
T 4e6h_A 248 --------------RRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES 313 (679)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH
Confidence 01111111122222222222333445666654432 1134577899999999988
Q ss_pred HcC-------ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 368 RDG-------DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH-NALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 368 ~~g-------d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~-~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
..+ ..++++.+|++||..||+++++|+.|+.++...|+.++|+ .+|+||+..+ |.+..+|+.++.++++.|
T Consensus 314 ~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 314 DNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhC
Confidence 754 2467889999999999999999999999999999999996 9999999876 889999999999999999
Q ss_pred CHHHHHHHHHHHhhhc----------CCC-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001060 440 DIDGARAAYQLVHTET----------SPG-----------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~----------~P~-----------~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~ 498 (1169)
++++|+.+|++++..+ .|. ...+|+.++.+++|.|+++.|+.+|.+|++..+. .
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-----~ 467 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-----V 467 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----S
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----C
Confidence 9999999999984321 253 4568999999999999999999999999987321 1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 578 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~ 578 (1169)
.+.+|+.++.++++..++.+.||+||+++|+.+|++..+|..|+.|+...++ ++.+|.+|++++...++ ++
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~------~~ 538 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD------SH 538 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS------TT
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC------HH
Confidence 2568999999998855669999999999999999999999999999999887 67899999999997653 34
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCC
Q 001060 579 EREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP 644 (1169)
Q Consensus 579 ~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~ 644 (1169)
++..||..|++||..+|+++++.+|++|+.+++|.. .+ ....++||++.+..+|..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~------~~----~~~f~~ry~~~~~~~i~~ 594 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV------NK----LEEFTNKYKVLDVNYLQR 594 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC------CH----HHHHHHHTCBTTBCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------cH----HHHHHHHhcCCcchhHHH
Confidence 678999999999999999999999999999999964 11 233468888887766543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=477.48 Aligned_cols=480 Identities=21% Similarity=0.356 Sum_probs=399.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
|+++|+.||.|+++|..++.+ .. .+++++|+.+|+++|..+|.+..+|+.|+.++.+.|++++|+++|+|||..+|
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQ--NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HH--SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HH--hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Confidence 688999999999999999996 43 46999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHH
Q 001060 168 SVDIWLHYCIFAINTYGDPETIRR----LFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRIL 234 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~~~e~Ar~----~~erAl~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~a~~iY~r~L 234 (1169)
++++|+.|+.++.+..++.+.|++ +|++++..+|.++.+..+|..|+.|+.. ++++++|+.+|+++|
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 899999999998877787766654 9999999999999999999999999987 789999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 235 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 235 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
++|..+...+|..|..|+..... . .+ .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~--~----~~-----------------------------------------------~ 184 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI--H----LA-----------------------------------------------K 184 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH--H----HH-----------------------------------------------H
T ss_pred hchhhhHHHHHHHHHHHHHhhch--h----HH-----------------------------------------------H
Confidence 99888888999888877432110 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC----hhcHHHHHHHHHHHHHc----CCh----HHHHHHHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERD----GDF----NKVVKLYERC 382 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~----~~~~~~W~~yl~~~~~~----gd~----~~a~~lyera 382 (1169)
+++..+...|......-..+..+.+++++.+.++.|.. ..+..+|..|+.|++.. ++. .+++.+|++|
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 01100111111111111222233447776555555432 35578999999998764 233 4889999999
Q ss_pred HHhccCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 383 LIACANYPEYWIRYVLCMEA-------SGSMD-------LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~-------~g~~e-------~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
|..+|.++++|+.|+.++.. .|+++ +|+.+|++|++...|++..+|+.++.++++.|++++|+.+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999986 68887 89999999997334899999999999999999999999999
Q ss_pred HHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 449 QLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 449 ~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
+++ +++.|.+. .+|+.++.++.+.|++++|+.+|++|++..+. ...+|...+.+++...|++++|+++|+++
T Consensus 345 ~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 345 NRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHH-HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHH-hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 998 78899875 69999999999999999999999999998653 24466666666655689999999999999
Q ss_pred hhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001060 528 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 607 (1169)
Q Consensus 528 l~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~ 607 (1169)
|+.+|++..+|..|+.++...|+ .+.++.+|++++...+.+ ++.+..+|..|++||..+||.+++.++.+|+
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~-----~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSC-----GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999887 677999999999986543 3566789999999999999999999999999
Q ss_pred HhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCCC
Q 001060 608 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSP 646 (1169)
Q Consensus 608 ~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~~ 646 (1169)
.+.+|. +.+++ ++...+||||+++++||+++.
T Consensus 490 ~~~~p~-----~~~~~--~~~~~~~r~~~~~~~~~~~~~ 521 (530)
T 2ooe_A 490 FTAFRE-----EYEGK--ETALLVDRYKFMDLYPCSASE 521 (530)
T ss_dssp HHHTHH-----HHTTC--HHHHHGGGTCBTTBCSSCHHH
T ss_pred HHHCch-----hccCc--hHHHHHHHHHhcccCCCCHHH
Confidence 999984 34444 467889999999999999864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=381.06 Aligned_cols=429 Identities=14% Similarity=0.132 Sum_probs=327.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
+++.||.+|++++..||. +++++|+.+|+|||..+| |++||..|++|........+.++.+|++
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 599999999999999998 789999999999999987 9999999999999544456789999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHH----HhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHH
Q 001060 196 GLAYVGTDYLSFPLWDKYIEYEY----MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 271 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~~e~----~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~ 271 (1169)
|+..+|.|+.+..||..|++|+. .++++++++++|+|+|.+|+.+.+.+|..|..|+...+.. +
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~---~--------- 141 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI---T--------- 141 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH---H---------
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc---c---------
Confidence 99999999999999999999976 4678999999999999999999999999999885432100 0
Q ss_pred HHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCC
Q 001060 272 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 351 (1169)
Q Consensus 272 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl 351 (1169)
..+++.. ...++..++..|+.+... .
T Consensus 142 -----------------------------------------~~~~~~~------~~~~y~~ar~~y~~~~~~-------~ 167 (493)
T 2uy1_A 142 -----------------------------------------GKKIVGD------TLPIFQSSFQRYQQIQPL-------I 167 (493)
T ss_dssp -----------------------------------------HHHHHHH------HHHHHHHHHHHHHHHHHH-------H
T ss_pred -----------------------------------------HHHHHHH------HhHHHHHHHHHHHHHHHH-------H
Confidence 0011111 112344444445544431 0
Q ss_pred ChhcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC
Q 001060 352 SVTELENWHNYLDFIERDGD-------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 424 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd-------~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~ 424 (1169)
...++.+|..|++|++..+. .+++..+|++||..+|+++++|+.|+.++...|+.+.|+.+|+||+.. |.+
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 11246799999999875421 467899999999999999999999999999999999999999999997 788
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh-hh-------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVH-TE-------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~-~~-------~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~ 496 (1169)
..+|+.++.+++. ++. -..++++.. .+ ..+....+|+.|+.++.+.+++++|+.+|++| . .+.
T Consensus 246 ~~l~~~y~~~~e~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---- 316 (493)
T 2uy1_A 246 MFLSLYYGLVMDE-EAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG---- 316 (493)
T ss_dssp SHHHHHHHHHTTC-THH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC----
T ss_pred HHHHHHHHhhcch-hHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC----
Confidence 8999999887431 111 112222210 00 11223478999999999999999999999999 3 321
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001060 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576 (1169)
Q Consensus 497 ~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~ 576 (1169)
....+|+.++.+++...++.+.||.+|+++++..|+++.+|..|+.||..+++ .+.+|.+|+++..
T Consensus 317 -~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~---~~~aR~l~er~~k---------- 382 (493)
T 2uy1_A 317 -VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD---EENARALFKRLEK---------- 382 (493)
T ss_dssp -CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHSCC----------
T ss_pred -CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH----------
Confidence 13569999999999866679999999999999999999999999999999887 6779999999832
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC----CC-Cc----hhhhhcchhhhhcchHHHhhhcCCCCCC-C
Q 001060 577 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP----HR-ST----SELRKRHAEDFLASERAKMAKSYSGAPS-P 646 (1169)
Q Consensus 577 ~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~----~~-~~----~~~~kr~~~~~~~~~~~k~~~~~~~~~~-~ 646 (1169)
+..+|..|++||..+||.++++++++|..+.+.. .+ +. ...++-.-.-...++||.++++.||+++ .
T Consensus 383 ---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~~~~~ 459 (493)
T 2uy1_A 383 ---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRL 459 (493)
T ss_dssp ---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCCTTCC
T ss_pred ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCCccch
Confidence 2479999999999999999999999999887752 11 10 1111110011235789999999999976 5
Q ss_pred ccccccCC
Q 001060 647 AQSLMGAY 654 (1169)
Q Consensus 647 ~~~~~~~~ 654 (1169)
.+.-+...
T Consensus 460 ~~~~~~~~ 467 (493)
T 2uy1_A 460 LDEFMENL 467 (493)
T ss_dssp CTTTTC--
T ss_pred HHHHHHhc
Confidence 56666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-30 Score=319.97 Aligned_cols=437 Identities=12% Similarity=0.137 Sum_probs=325.2
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCH---
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN---IVKIRRVYDAFLAEFP--LCYGYWKKYADHEARVGSM--- 151 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~---i~~Ar~~ye~~l~~~P--~~~~~W~~~a~~e~~~~~~--- 151 (1169)
.+...-..++++|...|.....|..++.+..+. ++ +++++.+|+++|...| .+..+|..|+.+..+.++.
T Consensus 81 ~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 81 QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 456677789999999999999999999997764 57 9999999999999994 6889999999999887764
Q ss_pred -----HHHHHHHHHHHhc----cCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001060 152 -----DKVVEVYERAVQG----VTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYI 214 (1169)
Q Consensus 152 -----e~A~~l~eraL~~----~P~s~~lw~~y~~~~~~--------~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~ 214 (1169)
+.++++|+++|.. ++.+..+|..|+.|+.. ..++.+.+|.+|+++|. +|.+ ....+|..|.
T Consensus 159 ~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~-~~~~~w~~Y~ 236 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMD-CLESMWQRYT 236 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCS-SHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccH-HHHHHHHHHH
Confidence 5577999999975 45688999999999872 12357889999999996 5554 2468999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcchhhHH---HHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhcccccc
Q 001060 215 EYEYMQQEWSRVAMIYTRILENPIQQLD---RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEV 291 (1169)
Q Consensus 215 ~~e~~~~~~~~a~~iY~r~L~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~ 291 (1169)
.|+...+... ++++..... ..+. ..+.....+... +..... ........ ..
T Consensus 237 ~fe~~~~~~~-a~~~~~e~~----~~y~~Ar~~~~e~~~~~~~--l~r~~p------------~~~~~~~~--~~----- 290 (679)
T 4e6h_A 237 QWEQDVNQLT-ARRHIGELS----AQYMNARSLYQDWLNITKG--LKRNLP------------ITLNQATE--SN----- 290 (679)
T ss_dssp HHHHHHCTTT-HHHHHHHHH----HHHHHHHHHHHHHHHHTTT--CCCCCC------------SSSTTCCT--TT-----
T ss_pred HHHHhcCcch-HHHHHHHhh----HHHHHHHHHHHHHHHHHHh--Hhhccc------------cccccchh--cc-----
Confidence 9998753321 222221110 1111 222223222211 111000 00000000 00
Q ss_pred CCccccccCCccccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH
Q 001060 292 QPDATEQTSKPVSAGLTEAEELEKYIAVREEMY---KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER 368 (1169)
Q Consensus 292 ~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y---~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~ 368 (1169)
.+............|.+|+......- .........+..|+++|. ..|...++|..|+.|++.
T Consensus 291 -------~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--------~~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 291 -------LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ--------HVCFAPEIWFNMANYQGE 355 (679)
T ss_dssp -------SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHH
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHh
Confidence 00000011122345666654321100 000112344567999998 567778999999999999
Q ss_pred cCChHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh----------c-----------cChH
Q 001060 369 DGDFNKVV-KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----------K-----------RLPE 426 (1169)
Q Consensus 369 ~gd~~~a~-~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~----------p-----------~~~~ 426 (1169)
.|+.++|+ .+|++++..||.+..+|+.|+.+++..|+++.|+.+|++++.... | ....
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 99999996 999999999999999999999999999999999999999998641 2 2456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-~P~~~~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
+|+.+++++.+.|+++.||++|.++ ++. .+....+|+.++.+|.+.++ .+.|+.+|+++++..+. .+.+|.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~------~~~~w~ 508 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT------DGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT------CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------chHHHH
Confidence 9999999999999999999999999 454 44457899999999988865 89999999999999863 377999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhcC---CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHVQ---LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~p---~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.|++|+.. .|+.+.||.+|++|++..| ....+|..|+.||..+|+. +.++++++|++...|+++
T Consensus 509 ~y~~fe~~-~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~---~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 509 KYLDFLIY-VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL---NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCc
Confidence 99999988 8999999999999999998 4679999999999999984 558999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-30 Score=317.41 Aligned_cols=415 Identities=16% Similarity=0.245 Sum_probs=317.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHH-
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA-RVGSMDKVVE- 156 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~-~~~~~e~A~~- 156 (1169)
+.+..+...|+++|+.+|.+...|..++.++.+. +++++|+.+|+++|..+| +..+|+.|+.+.. ..++++.|++
T Consensus 26 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHH
Confidence 3467889999999999999999999999998874 599999999999999999 6889999998765 4577776655
Q ss_pred ---HHHHHHhc---cCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 001060 157 ---VYERAVQG---VTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 222 (1169)
Q Consensus 157 ---l~eraL~~---~P~s~~lw~~y~~~~~~--------~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~ 222 (1169)
+|++++.. +|.+..+|..|+.|+.. ..++.+.|+.+|+++|+ ++.+ ....+|..|..|+...+.
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~-~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI-NIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT-THHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh-hHHHHHHHHHHHHHhhch
Confidence 99999875 45789999999999873 15789999999999998 5432 235899999999865543
Q ss_pred -------------HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhcccc
Q 001060 223 -------------WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEE 289 (1169)
Q Consensus 223 -------------~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~ 289 (1169)
+..|+.+|... ..+... +... ..
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~---------------~~~~~~-------------------l~~~---~~------- 216 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEY---------------ETVMKG-------------------LDRN---AP------- 216 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH---------------HHHHHH-------------------CCSS---SC-------
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHH---------------HHHHHH-------------------hccc---cc-------
Confidence 33333333321 111000 0000 00
Q ss_pred ccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 290 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK----EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 290 ~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~----~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
.+.| ............|..++..........+ ....++..|+++|. .+|...++|..|+.+
T Consensus 217 ~~~p-------~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 217 SVPP-------QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYEAAQY 281 (530)
T ss_dssp CCCC-------C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHH
T ss_pred cCCC-------CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH--------hCCCCHHHHHHHHHH
Confidence 0000 0000000011223333211100000000 12355678999998 577889999999999
Q ss_pred HHH-------cCChH-------HHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh-HHHH
Q 001060 366 IER-------DGDFN-------KVVKLYERCLI-ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHL 429 (1169)
Q Consensus 366 ~~~-------~gd~~-------~a~~lyeraL~-~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~-~l~~ 429 (1169)
+.+ .|+++ +|+.+|++++. .+|.+..+|+.++.++...|++++|+.+|++++++. |.++ .+|+
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 360 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYI 360 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHH
Confidence 876 68987 99999999997 799999999999999999999999999999999976 6664 6999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 508 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~-r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~ 508 (1169)
.++.++.+.|++++|+.+|+++ ++..|....+|+..+.++. ..|++++|+.+|+++++..|. .+.+|..|+.
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~A-l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~------~~~~~~~~~~ 433 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKA-REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC------CHHHHHHHHH
Confidence 9999999999999999999999 7778888888887777753 589999999999999999863 3789999999
Q ss_pred HHHHHhCCHHHHHHHHHHHhhhcCCCH----HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001060 509 FLHLVSRNAEKARQILVDSLDHVQLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 509 ~~~~~~g~~e~Ar~i~~kAl~~~p~s~----~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
++.. .|++++||.+|+++++..|.++ .+|..|+.||..+|+ .+.+.+++.+++...|
T Consensus 434 ~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTH
T ss_pred HHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCc
Confidence 9887 9999999999999999876654 599999999999998 4557888888887655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=292.33 Aligned_cols=374 Identities=14% Similarity=0.153 Sum_probs=336.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.+.++++.+|.+...|..++.++... +++++|..++++++..+|.+...|..++..+.+.|++++|+++|
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3477899999999999999999999999998874 69999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
++++...|.+.+.|..++..+. ..|++++|+..|+++++..+ ....+|..+.......|++++|..+|++++...+
T Consensus 91 ~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 91 RHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCT---TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888 78999999999999999544 4677899999999999999999999999987644
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~ 318 (1169)
.+...++
T Consensus 167 ~~~~~~~------------------------------------------------------------------------- 173 (388)
T 1w3b_A 167 NFAVAWS------------------------------------------------------------------------- 173 (388)
T ss_dssp TCHHHHH-------------------------------------------------------------------------
T ss_pred CCHHHHH-------------------------------------------------------------------------
Confidence 4322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.+..+|...+++++++..|+++++ ++|.....|..++..+...|++++++..|++++...|.+..+|..++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 123355667778889999999998 678889999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
++...|++++|+..|++++++. |+++.+|..++.++.+.|++++|+.+|+++ +++.|.+..+|..++.++.+.|++++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999987 889999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
|+.+|+++++..|+ .+.++..++..+.. .|++++|+..|+++++..|++...|..+......+
T Consensus 324 A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 324 AVRLYRKALEVFPE------FAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTSCTT------CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 99999999998753 36688889988776 99999999999999999999998887776655443
|
| >3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-32 Score=264.90 Aligned_cols=124 Identities=38% Similarity=0.666 Sum_probs=107.2
Q ss_pred CCcchhHhHHHHHHHHhhhhCcccccccccCCceEEEE----cCCcccchhhHHHHHHHHhcCCCcc--eeEeeeecccc
Q 001060 718 AYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRV----DGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGS 791 (1169)
Q Consensus 718 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~----~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~ 791 (1169)
..+.+||+.||+|||++|+++|+.||+||+++|++++. +|+......|.++|+++|++|||++ ++|.++|||++
T Consensus 7 p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps 86 (140)
T 3q90_A 7 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHAT 86 (140)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEe
Confidence 35788999999999999999999999999998777653 4544456778899999999999975 57999999999
Q ss_pred CCCceEEEEEEEEEecCccccceeEEEEEEEeeC---CeEEEEcceEEeccCCC
Q 001060 792 WNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFLDEEP 842 (1169)
Q Consensus 792 ~~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nDifr~~~~~~ 842 (1169)
+++||||+|+|.|+.++. ++|+|+|||+|+|++ ++|||+||||||+|+.+
T Consensus 87 ~~~gilI~V~G~l~~~~~-~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 87 LNDGVVVQVMGLLSNNNQ-ALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp GGGCEEEEEEEEEECTTC-CCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred CCCCEEEEEEEEEecCCC-CccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 999999999999999885 799999999999996 89999999999999875
|
| >3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=256.34 Aligned_cols=116 Identities=35% Similarity=0.611 Sum_probs=104.9
Q ss_pred CcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccCCCce
Q 001060 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGV 796 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~~~~i 796 (1169)
.|.+||++||++||++|+++|+.|++||+++|+++|++|+.+. |.++|+++|++|||++| +|.++|||++.++||
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~~~~---G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~gi 78 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVV---GQREIHNRIQQLNFNDCHAKISQVDAQATLGNGV 78 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCCCEE---SHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGGEE
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCcEec---CHHHHHHHHHcCCCcceEEEEecccceEcCCCCE
Confidence 5789999999999999999999999999999999998776554 55678999999999854 799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEec
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 838 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 838 (1169)
||+|+|.|+.++. +.|+|+|||+|+|++ ++|||+||||||+
T Consensus 79 li~V~G~l~~~~~-~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 79 VVQVTGELSNDGQ-PMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEESTTC-CCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCC-CCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 9999999999886 789999999999996 8999999999995
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=279.93 Aligned_cols=369 Identities=12% Similarity=0.066 Sum_probs=328.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Q 001060 105 LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 184 (1169)
Q Consensus 105 L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~ 184 (1169)
++..+.. .|++++|+.+|++++..+|++..+|..++.++...+++++|+..+++++...|.+...|...+..+. ..|
T Consensus 5 ~a~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g 81 (388)
T 1w3b_A 5 LAHREYQ--AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERG 81 (388)
T ss_dssp HHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCC
Confidence 3444444 4699999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHH
Q 001060 185 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264 (1169)
Q Consensus 185 ~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 264 (1169)
++++|+..|++++...+ .....|...+......|+++.|..+|+++++..+.....
T Consensus 82 ~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------- 137 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV--------------------- 137 (388)
T ss_dssp CHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH---------------------
T ss_pred CHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---------------------
Confidence 99999999999999544 366788888888888999999999999998764332211
Q ss_pred HHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001060 265 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344 (1169)
Q Consensus 265 ea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~ 344 (1169)
...+..+|...+++++|+..|+++++
T Consensus 138 ----------------------------------------------------~~~l~~~~~~~g~~~~A~~~~~~al~-- 163 (388)
T 1w3b_A 138 ----------------------------------------------------RSDLGNLLKALGRLEEAKACYLKAIE-- 163 (388)
T ss_dssp ----------------------------------------------------HHHHHHHHHTTSCHHHHHHHHHHHHH--
T ss_pred ----------------------------------------------------HHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence 11223456667788899999999998
Q ss_pred CcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC
Q 001060 345 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 424 (1169)
Q Consensus 345 ~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~ 424 (1169)
++|.....|..++..+...|++++|+..|++++...|.+.+.|..++.++...|++++|+..|++++.+. |++
T Consensus 164 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 164 ------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp ------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 6788889999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
..+|..++.++...|++++|+..|+++ +++.|++..+|..++.++.+.|++++|+.+|++++...|. .+.+|.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 309 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHH
Confidence 999999999999999999999999998 7889999999999999999999999999999999999753 367888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.++.++.. .|++++|+.+|+++++..|++...+..++......+. .+.+..+|++++...|+..
T Consensus 310 ~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 310 NLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Confidence 88888776 9999999999999999999999999999988888877 5668999999999876543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=294.51 Aligned_cols=405 Identities=14% Similarity=0.145 Sum_probs=298.9
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVY 158 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~ 158 (1169)
.+..+-..|+++|...|. +++++++.+|+++|...| +.++|+.|+.++.+.+. .+.++.+|
T Consensus 10 ~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp --CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred chHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 367788888888888887 379999999999999999 88999999999999984 57799999
Q ss_pred HHHHhc---cCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh----------
Q 001060 159 ERAVQG---VTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE---------- 222 (1169)
Q Consensus 159 eraL~~---~P~s~~lw~~y~~~~~~---~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~---------- 222 (1169)
+++|.. ++.+.++|..|++|+.+ ..++.+.+|.+|+|||. +|.. .-..+|..|..|+...+.
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMG-SLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-Chhh-hHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999986 46899999999999762 23568899999999998 6643 236899999999977432
Q ss_pred ---HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccccc
Q 001060 223 ---WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 299 (1169)
Q Consensus 223 ---~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 299 (1169)
+..|+.+|+.++......-..+|..|..|+..+++. + +
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-~------------------------------------~-- 190 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-L------------------------------------G-- 190 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-C------------------------------------C--
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-C------------------------------------c--
Confidence 333455555444321110012444444443221100 0 0
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHH
Q 001060 300 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379 (1169)
Q Consensus 300 ~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~ly 379 (1169)
...........|+++|. ..|....+|..|+.|+.+.|+.++|+.+|
T Consensus 191 --------------------------~~~~~~Rv~~~ye~al~--------~~p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 191 --------------------------GRPHESRMHFIHNYILD--------SFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------chhhHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00011223456888887 34555899999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--H------HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT--H------VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 380 eraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl--~------~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+||+.. |.+..+|+.|+.+++. +. ....++++.+ . ...+....+|+.|+.++.+.++++.||.+|+++
T Consensus 237 erAi~~-P~~~~l~~~y~~~~e~-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLYYGLVMDE-EA--VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHH-CCSSHHHHHHHHHTTC-TH--HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHhhcch-hH--HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999 9999999999887431 11 1112222211 0 011234589999999999999999999999998
Q ss_pred hhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 452 HTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 452 ~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
. ..+....+|+.++.++.+.+ +.+.|+.+|++++...+. .+.+|..|++|+.. .|+.++||.+|+++.
T Consensus 313 -~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~------~~~~~~~yid~e~~-~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 313 -G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD------STLLKEEFFLFLLR-IGDEENARALFKRLE-- 381 (493)
T ss_dssp -T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HTCHHHHHHHHHHSC--
T ss_pred -h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--
Confidence 3 23346789999999999887 599999999999998753 36789999999887 999999999999983
Q ss_pred cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC----CCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 001060 531 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS----DSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAED 605 (1169)
Q Consensus 531 ~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~----~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~ 605 (1169)
.+..+|..|+.||..+|+ .+.+++++++++.... ++++ .+.+.|++||..+|+++++..-+.
T Consensus 382 --k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~~~~~~~~~~~~--------~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 382 --KTSRMWDSMIEYEFMVGS---MELFRELVDQKMDAIKADAILPPL--------PPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp --CBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHTTCCBCCC--------CCC--CCCCCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhcccccCCcc--------cccccHHHHHHHhhhHHHHHHHhh
Confidence 578999999999999998 5667888888875322 3443 378999999999999988776663
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=286.49 Aligned_cols=455 Identities=10% Similarity=-0.005 Sum_probs=362.5
Q ss_pred HHhCC-CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001060 92 VKANS-SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 92 l~~nP-~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 170 (1169)
....| .+...|..++..+... |++++|+.+|++++...|++ ..|..++..+.+.|++++|+.+|++++.. |.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 151 (597)
T 2xpi_A 76 QNTDSLSREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSA 151 (597)
T ss_dssp ------CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHH
T ss_pred cccchHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchh
Confidence 33344 5788899999988874 59999999999999999965 67888999999999999999999999875 67899
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhc-------------CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYV-------------GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~-------------g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
.|..++..+. ..|++++|+.+|++..... ........+|...+......|++++|+.+|+++++..
T Consensus 152 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 152 CRYLAAFCLV-KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999888 7899999999999633211 0002246789999999999999999999999999875
Q ss_pred hhhHHHHHHH-------------------HHHHHh-------------cCCCccccCHHHHHHHHHHHhhCCCccchhhh
Q 001060 238 IQQLDRYFSS-------------------FKEFAA-------------SRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 285 (1169)
Q Consensus 238 ~~~~~~~~~~-------------------~~~~~~-------------~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~ 285 (1169)
+.+...+... +..... ...+......+++.. ++....+.
T Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~----~~~~~~~~----- 301 (597)
T 2xpi_A 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED----YLSSINGL----- 301 (597)
T ss_dssp TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH----HHHTSTTG-----
T ss_pred chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH----HHHHhhcC-----
Confidence 4433332211 111000 000111111122211 11111000
Q ss_pred ccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 286 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 286 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
..+.. .+..+...|...+++++|+..|+++++ .+|.+...|..++..
T Consensus 302 ---------------------~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 302 ---------------------EKSSD----LLLCKADTLFVRSRFIDVLAITTKILE--------IDPYNLDVYPLHLAS 348 (597)
T ss_dssp ---------------------GGCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCCTTHHHHHHH
T ss_pred ---------------------CchHH----HHHHHHHHHHHhcCHHHHHHHHHHHHH--------cCcccHHHHHHHHHH
Confidence 01111 334456788899999999999999997 466678889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
+.+.|++++++.+|++++...|.+..+|..++.++.+.|++++|+.+|++++++. |++..+|..++.++.+.|++++|+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999977 788999999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 525 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~ 525 (1169)
.+|+++ ++..|++..+|..++.++.+.|++++|+.+|++++...+. .+.+|..++..+.+ .|++++|.++|+
T Consensus 428 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~g~~~~A~~~~~ 499 (597)
T 2xpi_A 428 SAYTTA-ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFN-KSDMQTAINHFQ 499 (597)
T ss_dssp HHHHHH-HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHH-HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 999998 7889999999999999999999999999999999998753 36788899998887 999999999999
Q ss_pred HHhhh------cCCC-HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHH
Q 001060 526 DSLDH------VQLS-KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQ 598 (1169)
Q Consensus 526 kAl~~------~p~s-~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~ 598 (1169)
++++. .|++ ...|..++......++ .+.+..+|++++...+++. .+|..........|+.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTNDA---------NVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCCH---------HHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhCCHH
Confidence 99998 5554 6788888888888887 6778999999998877654 58889999999999999
Q ss_pred HHHHHHHHHHhhhCCC
Q 001060 599 LIKKAEDRHARLFLPH 614 (1169)
Q Consensus 599 ~i~~v~~R~~~~~~~~ 614 (1169)
.+.+++++..++.|..
T Consensus 568 ~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 568 LAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999988764
|
| >1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=238.16 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=106.5
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceE
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVL 797 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~il 797 (1169)
+.+||+.||++||++|+++|+.|++||+++| ++.|+|+.+ .|.++|.++|.+||+++ ++|.++|||++.++|||
T Consensus 7 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S-~ls~~g~~~---~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~~~il 82 (127)
T 1gy6_A 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDAS-CLTWEGQQF---QGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEE-EEEETTEEE---ESHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCCc-EEEECCccc---cCHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcEE
Confidence 7889999999999999999999999999986 445788654 45677899999999974 57999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccCCC
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEP 842 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~ 842 (1169)
|+|+|.++.++. ++|+|+|||+|+|++++|||+||||||++..+
T Consensus 83 i~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 83 SMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp EEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEEEEEECCC-CcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999886 79999999999999999999999999998753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=266.52 Aligned_cols=373 Identities=12% Similarity=0.064 Sum_probs=298.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
.......+.+++..+|.+.+.|..++..+... |++++|+.+|++++..+|.+...|..++..+...|++++|+.+|++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34556678889999999999999999998884 6999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF---PLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~---~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
++...|.+...|..++..+. ..|++++|+.+|++++...+. .. ..|..++.......
T Consensus 86 al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~---------------- 145 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPS---ENEEKEAQSQLIKSDEMQR---------------- 145 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHHH----------------
Confidence 99999999999999999988 789999999999999984433 32 33333333111000
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i 317 (1169)
.
T Consensus 146 -------------------------------------------------------------------------------~ 146 (450)
T 2y4t_A 146 -------------------------------------------------------------------------------L 146 (450)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..+...|...+++++|+..|+++++ ++|.....|..++..+...|++++|+.+|++++...|.+..+|..++
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 218 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0112345567788889999999988 57778899999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChH----H
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLL----E 461 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~ 461 (1169)
.++...|++++|+.+|++++.+. |++..++..+ +.++...|++++|+.+|+++ +++.|++. .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCSSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCcchHHHHH
Confidence 99999999999999999999987 7888888776 88899999999999999998 77899874 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
+|..++.++.+.|++++|+.+|++++...|. .+.+|..++.++.. .|++++|+..|+++++..|++..++..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7889999999999999999999999998753 36789999999877 9999999999999999999999888877
Q ss_pred HHhHh------------hCCCh--hHHHHHHHHHHH-HhhcCCCC
Q 001060 542 IHFES------------IQSSP--KQIDFLEQLVDK-FLMSNSDS 571 (1169)
Q Consensus 542 a~~E~------------~~~~~--~~~~~~r~l~er-al~~~~~~ 571 (1169)
..+.. .++.. ...+.+++.|.+ ++...|+.
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 64322 22211 112445666665 56666554
|
| >1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=238.56 Aligned_cols=116 Identities=30% Similarity=0.473 Sum_probs=104.4
Q ss_pred CcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCce
Q 001060 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 796 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~i 796 (1169)
.+.+||+.||++||++|+++|+.|++||+++| ++.|+|+.+ .|.++|.++|.+||+++ ++|.++|||++.+|||
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S-~ls~~g~~~---~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~gi 85 (129)
T 1zo2_A 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQS-MLTWEDTQF---QGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGS 85 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHCGGGGGGGEEEEE-EEEETTEEE---ESHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCc-EEEECCcee---ccHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcE
Confidence 47899999999999999999999999999985 445798654 45677899999999976 5799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEecc
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 839 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~~ 839 (1169)
||+|+|.|+.+++ ++|+|+|||+|+|++ ++|||+||||||++
T Consensus 86 lI~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 86 IVFVTGDVRIDDG-QPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp EEEEEEEEEETTC-CCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred EEEEEEEEEECCC-CcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9999999999886 799999999999998 89999999999986
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=270.68 Aligned_cols=240 Identities=12% Similarity=0.056 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++.+|...+++++++..|+++++ ++|. ...|..++..+...|++++|+..|++++..+|.+..+|..++
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~--------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESIN--------LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHh--------cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 3445677888899999999999998 5565 788999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
.++...|++++|+..|++++++. |++..+|+.++.++...|++++|+.+|+++ +++.|++..+|..++.++...|+++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET-KLKFPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999987 888999999999999999999999999998 7889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
+|+.+|++++...+...........+...+.++.. . |++++|+.+|+++++..|++...+..++.+...
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999987543322222234555666555 6 999999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 548 QSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 548 ~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.++ .+.+..+|++++...++..
T Consensus 475 ~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 475 MEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTC---HHHHHHHHHHHHHHC--CH
T ss_pred hcc---HHHHHHHHHHHHHhCCCcH
Confidence 887 6678999999999877654
|
| >3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=243.18 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=104.7
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccC-------
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------- 792 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~------- 792 (1169)
+.+||+.||++||++|+++|+.|++||.++|.| .|+|+.+ .|.++|.++|++||+..++|.++|||++.
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~l-s~~g~~~---~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~~~~~q~ 108 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKIGFLYTQVSNA-VWNGNPI---NGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDM 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEE-EETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEE-EECCeec---ccHHHHHHHHHhCCCeEEEEEEEEEEEcCccccCCC
Confidence 457999999999999999999999999997655 5898755 45677899999999988899999999998
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 793 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 793 ~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
++||||+|+|.|+.++. ++|+|+|||+|+|++++|||+||||||+|
T Consensus 109 ~~~ilI~V~G~l~~~~~-~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 109 SGGMLLNVAGAVTVDGD-SKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp TTCEEEEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCeEEEEEEEEEEECCC-CceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 67999999999999886 78999999999999999999999999986
|
| >1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=236.48 Aligned_cols=117 Identities=26% Similarity=0.460 Sum_probs=104.2
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccC-CCce
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSW-NGGV 796 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~-~~~i 796 (1169)
+.+||+.||++||++|+++|+.|++||+++|. +.|+|+.+. |.++|.++|.+|||++| +|.++|||++. +|||
T Consensus 5 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-~s~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~gi 80 (125)
T 1gy7_A 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESM-LTFETSQLQ---GAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDV 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcE-EEECCcEec---CHHHHHHHHHhCCCcceEEEEEEEEEEEecCCCeE
Confidence 67899999999999999999999999999754 457886544 56778999999999764 79999999985 5899
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccC
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 840 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 840 (1169)
||+|+|.++.+++.++|+|+|||+|+|++++|||+||||||++.
T Consensus 81 li~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 81 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp EEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 99999999998754799999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-25 Score=275.02 Aligned_cols=444 Identities=11% Similarity=-0.027 Sum_probs=337.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 001060 133 LCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDK 212 (1169)
Q Consensus 133 ~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~ 212 (1169)
.+...|..++..+.+.|++++|+.+|++++...| +...|..++..+. ..|++++|+.+|++++.. ..+..+|..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYC-CTGDYARAKCLLTKEDLY----NRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHTCGG----GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-CchHHHHHHHHHH-HcCcHHHHHHHHHHHhcc----ccchhHHHH
Confidence 4578899999999999999999999999999888 4577888888888 789999999999998763 235678999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcc----------------hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC
Q 001060 213 YIEYEYMQQEWSRVAMIYTRILENP----------------IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 276 (1169)
Q Consensus 213 y~~~e~~~~~~~~a~~iY~r~L~~p----------------~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~ 276 (1169)
.+..+...|+++.|+.+|++++... ..+...++.....+..... .++|..+..++...
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN------FDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHh
Confidence 9999999999999999999643322 1123334433333333221 23333333322221
Q ss_pred CCccchhhhccccccCC-cc------ccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccC
Q 001060 277 PSETGAEVKANEEEVQP-DA------TEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 349 (1169)
Q Consensus 277 ~~e~~~~~~~~~~~~~~-~~------~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~ 349 (1169)
........... ....- .+ .... ........+......+...+...|.+.+++++++..|+++++
T Consensus 230 ~p~~~~~~~~l-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------- 300 (597)
T 2xpi_A 230 DAKCYEAFDQL-VSNHLLTADEEWDLVLKL-NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING------- 300 (597)
T ss_dssp CTTCHHHHHHH-HHTTCSCHHHHHHHHHHS-CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT-------
T ss_pred CchhhHHHHHH-HHhhcccchhHHHHHHhc-CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc-------
Confidence 11100000000 00000 00 0000 000000000111111112223456678999999999999887
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
. +.+...|..++..+.+.|++++|+.+|++++...|.+..+|..++.++...|++++|..+|++++... |++..+|.
T Consensus 301 -~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 301 -L-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp -G-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred -C-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 2 56789999999999999999999999999999999999999999999999999999999999999877 88999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
.++.++.+.|++++|+.+|+++ +++.|.+..+|..++.++.+.|++++|+.+|++++...+.+ ..+|..++..
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~ 450 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKS-STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHH
Confidence 9999999999999999999998 77899999999999999999999999999999999987632 4578888888
Q ss_pred HHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 001060 510 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 589 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~ 589 (1169)
+.. .|++++|+++|+++++..|.+...|..++.+....+. .+.+..+|++++...++.+ ..+.....+|...+.
T Consensus 451 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 451 HMQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQ--SNEKPWAATWANLGH 524 (597)
T ss_dssp HHH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSC--CCSGGGHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccc--cchhhHHHHHHHHHH
Confidence 777 9999999999999999999999999999999888887 6668889999877632211 111223578999999
Q ss_pred HHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 590 FLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 590 fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
.....|+.+.+.++.++..+..+.
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=261.99 Aligned_cols=272 Identities=20% Similarity=0.273 Sum_probs=236.7
Q ss_pred CChhcHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------cCCh-------HH
Q 001060 351 LSVTELENWHNYLDFIERD----GDF----NKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSM-------DL 408 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~----gd~----~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-------~g~~-------e~ 408 (1169)
.++.+..+|..|++|+++. ++. ++|+.+|++||..+|.++++|+.++.++.. .|++ ++
T Consensus 3 ~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHH
Confidence 4567889999999998775 344 689999999999999999999999999864 4886 89
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 409 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 409 A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~-~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
|+.+|+||++...|++..+|+.++.++.+.|++++|+.+|+++ +++.|.+.. +|+.++.++.+.|++++|+.+|++|+
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999434899999999999999999999999999998 789999887 99999999999999999999999999
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+..|.. ..+|..++.+++...|++++|+++|+++++.+|++..+|..++.++..+|+ .+.++.+|++++..
T Consensus 162 ~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~ 232 (308)
T 2ond_A 162 EDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTS 232 (308)
T ss_dssp TSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHS
T ss_pred hcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 987632 567888888876657999999999999999999999999999999999887 67799999999996
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCC
Q 001060 568 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP 644 (1169)
Q Consensus 568 ~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~ 644 (1169)
.+ ++++....+|..|+.|+..+|+.+.+.++++|+.+++|.... .. ......||++++++.||++
T Consensus 233 ~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~---~~----~~~~~~~r~~~l~~~P~~~ 297 (308)
T 2ond_A 233 GS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE---GK----ETALLVDRYKFMDLYPCSA 297 (308)
T ss_dssp SS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS---SC----HHHHHHTTTCBTTBCSSCH
T ss_pred cC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc---cc----hHHHHHHHHHhcccCCCCH
Confidence 32 223345689999999999999999999999999999997421 11 2256689999999999876
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-24 Score=262.13 Aligned_cols=431 Identities=12% Similarity=0.015 Sum_probs=301.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 178 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~ 178 (1169)
.++|..++..+... |++++|+.+|++++..+| +..+|..++..+.+.|++++|+.+|++++...|.+...|+.++..
T Consensus 6 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRN--KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 46777777777764 578888888888888887 577788888888888888888888888888888888888888777
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH---HHHHh-------------------c
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY---TRILE-------------------N 236 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY---~r~L~-------------------~ 236 (1169)
+. ..|++++|+..|++++...+.+... ...++...........+...+ +++.. .
T Consensus 83 ~~-~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NE-GLGKFADAMFDLSVLSLNGDFNDAS---IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HH-HTTCHHHHHHHHHHHHHSSSCCGGG---THHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HH-HHhhHHHHHHHHHHHHhcCCCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 77 6778888888888887754322111 111111111111111110000 00000 0
Q ss_pred c-----------------------hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCC
Q 001060 237 P-----------------------IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQP 293 (1169)
Q Consensus 237 p-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~ 293 (1169)
| +.+...++.....+...... ...+++......+.....+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~------------ 223 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP---ESYDKADESFTKAARLFEEQL------------ 223 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT---THHHHHHHHHHHHHHHHHHHT------------
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh---ccHHHHHHHHHHHHHHhhhhh------------
Confidence 0 00112222222111110000 011222111111110000000
Q ss_pred ccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChH
Q 001060 294 DATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373 (1169)
Q Consensus 294 ~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~ 373 (1169)
+..+... .........+..+..+|...+++++++..|+++++ .+|. ...|..++..+...|+++
T Consensus 224 ---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~-~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 224 ---DKNNEDE----KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--------LFPR-VNSYIYMALIMADRNDST 287 (514)
T ss_dssp ---TTSTTCH----HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------HCCC-HHHHHHHHHHHHTSSCCT
T ss_pred ---ccCcccc----ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------hCcc-HHHHHHHHHHHHHCCCHH
Confidence 0000000 00011122444556778889999999999999998 4556 889999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
+|+..|++++..+|.+.++|..++.++...|++++|+..|++++++. |++..+|+.++.++...|++++|+.+|+++ +
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEA-K 365 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999987 788999999999999999999999999998 7
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhhhc
Q 001060 454 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV--SRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 454 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~--~g~~e~Ar~i~~kAl~~~ 531 (1169)
+..|++..+|..++.++.+.|++++|+.+|++++...+..........+|..++.++... .|++++|+..|+++++..
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999999999999875422111133677777775432 789999999999999999
Q ss_pred CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 532 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 532 p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
|++...+..++.+....++ .+.+..+|++++...++++
T Consensus 446 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQED---IDEAITLFEESADLARTME 483 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSHH
T ss_pred cccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccccH
Confidence 9999999999998888887 6678999999999877654
|
| >2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=239.69 Aligned_cols=125 Identities=19% Similarity=0.317 Sum_probs=106.0
Q ss_pred CCCcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCC------------cccchhhHHHHHHHHhcC--CCcc--
Q 001060 717 PAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGD------------STESASSMLDIHSLVISL--NFTA-- 780 (1169)
Q Consensus 717 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~------------~~~~~~~~~~I~~~~~~l--~~~~-- 780 (1169)
...+.+||+.||++||++|+++|+.|++||+++|.|+ |+.. ....+.|.++|.++|.+| ||++
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s-~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~ 86 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELT-HTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLK 86 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEE-EccccccccccccccccceEeeCHHHHHHHHHhccCCCCceE
Confidence 3457899999999999999999999999999987666 4521 034556788999999999 9876
Q ss_pred eeEeeeeccccCC--CceEEEEEEEEEecCccccceeEEEEEEEeeC--CeEEEEcceEEeccCCCc
Q 001060 781 IEIKTINSLGSWN--GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE--KGYFVLNDIFHFLDEEPV 843 (1169)
Q Consensus 781 ~~i~~~d~q~~~~--~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nDifr~~~~~~~ 843 (1169)
++|.++|||++.+ +||||+|+|.|+.++. ++|+|+|||+|+|++ ++|||+||||||+++++.
T Consensus 87 h~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~-~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 87 LKLDTIDFQYTGHLHKSILIMATGEMFWTGT-PVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEEESGGGCEEEEEEEEEEEETTC-CCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEEccCCCCEEEEEEEEEEEECCC-CCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 4799999999987 8999999999999886 799999999999997 599999999999998753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=265.90 Aligned_cols=405 Identities=10% Similarity=0.012 Sum_probs=295.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.+..++..|+++++.+| |..+|..++..+... |++++|+.+|++++..+|.+...|..++.++.+.|++++|+..|
T Consensus 20 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 457889999999999999 799999999999985 59999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH---HH-------------------------------HHHhcCCC-
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF---ER-------------------------------GLAYVGTD- 203 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~---er-------------------------------Al~~~g~d- 203 (1169)
++++...|.+......++..... ......+.+.+ ++ .+......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLN-KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHH-HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 99999987553333322222220 00000000000 00 00000000
Q ss_pred -------CCCHHHHHHHHHHHHH---hhhHHHHHHHHHHHHh-----c---c------hhhHHHHHHHHHHHHhcCCCcc
Q 001060 204 -------YLSFPLWDKYIEYEYM---QQEWSRVAMIYTRILE-----N---P------IQQLDRYFSSFKEFAASRPLSE 259 (1169)
Q Consensus 204 -------~~s~~lw~~y~~~e~~---~~~~~~a~~iY~r~L~-----~---p------~~~~~~~~~~~~~~~~~~~~~~ 259 (1169)
+.....|......... .++++.|+.+|++++. . | +.....++.....+.....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 252 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND--- 252 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC---
Confidence 0013333333333332 4555555555555555 2 1 1122222222222211111
Q ss_pred ccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 260 LRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 339 (1169)
Q Consensus 260 ~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~ 339 (1169)
.+++......++.. .+. ...+..+..+|...+++++++..|++
T Consensus 253 ---~~~A~~~~~~~l~~-----------------------------~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 253 ---PLGAHEDIKKAIEL-----------------------------FPR-----VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp ---HHHHHHHHHHHHHH-----------------------------CCC-----HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred ---HHHHHHHHHHHHhh-----------------------------Ccc-----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12221111100000 000 01223334566777788888999999
Q ss_pred hhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001060 340 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV 419 (1169)
Q Consensus 340 al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~ 419 (1169)
+++ +++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+.+|+++++.
T Consensus 296 ~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 296 ALK--------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHT--------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred Hhh--------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 988 677778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhh
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE------AIIKHANMERR---LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~------~~~~~a~~e~r---~g~~e~A~~iy~~Al~~~ 490 (1169)
. |+++.+|..++.++...|++++|+.+|+++ +++.|++.. +|+.++.++.. .|++++|+.+|++++...
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 7 889999999999999999999999999998 677777744 99999999999 999999999999999987
Q ss_pred hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 491 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 491 ~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
+. .+.+|..++.++.. .|++++|+..|+++++..|++...+..+..+
T Consensus 446 ~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 446 PR------SEQAKIGLAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp TT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 53 36788889998877 9999999999999999999999888655433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=265.51 Aligned_cols=440 Identities=10% Similarity=0.008 Sum_probs=330.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
..++|..++..+... |++++|+.+|++++..+|.+..+|..++.++.+.|++++|+++|++++...|.+...|+.++.
T Consensus 24 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 568899999998884 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh-------HHHHHHHHHH
Q 001060 178 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ-------LDRYFSSFKE 250 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~-------~~~~~~~~~~ 250 (1169)
.+. ..|++++|+..|+ ++...+.. ...++......+....+..+|++++...+.. ...+...+..
T Consensus 102 ~~~-~~g~~~~A~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 102 ANE-SLGNFTDAMFDLS-VLSLNGDF------DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHH-HHTCHHHHHHHHH-HHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHH-HcCCHHHHHHHHH-HHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 998 8899999999996 77644332 1122223333456678999999998762211 1111111110
Q ss_pred HHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH-----HHHHHH
Q 001060 251 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV-----REEMYK 325 (1169)
Q Consensus 251 ~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~-----~~~~y~ 325 (1169)
+ ..+.+. ..+.+.. ..... ...+...+.. ......
T Consensus 174 ~----------~~~~~~-------~~~~~~~----------------------~~~~~-~~~~~~~l~~~~~~~~~~~~~ 213 (537)
T 3fp2_A 174 F----------DSHLEV-------SSVNTSS----------------------NYDTA-YALLSDALQRLYSATDEGYLV 213 (537)
T ss_dssp S----------CHHHHH-------HTSCCCC----------------------SSCSS-HHHHHHHHHHHHTCSHHHHHH
T ss_pred c----------ChHHHH-------HHHhhcc----------------------ccccH-HHHHHHHHHHHHHhhhhhhHH
Confidence 0 001110 0000000 00000 0111111111 123344
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhcHHH-------HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN-------WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~-------W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
..+.+++++..|+++++ .+|.+... |..++.++...|++++|+..|++++...|. ..+|+.++.
T Consensus 214 a~~~~~~A~~~~~~~l~--------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 284 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLS--------ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHH
Confidence 45689999999999998 55555544 555566777889999999999999999999 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
++...|++++|+.+|+++++.. |+++.+|+.++.++...|++++|+..|+++ +++.|++..+|..++.++...|++++
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA-QSLNPENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999988 889999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH------HHHHhHhhCC---
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE------ALIHFESIQS--- 549 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~------~~a~~E~~~~--- 549 (1169)
|+.+|++++...|.. +.+|..++.++.. .|++++|+.+|+++++..|.+...+. ..+.+....+
T Consensus 363 A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 363 SEAFFNETKLKFPTL------PEVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp HHHHHHHHHHHCTTC------THHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999998642 5688888988877 99999999999999998876543222 2222222220
Q ss_pred ----ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 550 ----SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 550 ----~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
...+.+.+..+|++++...+++. .+|..........|+.+.+.+.+++..++.+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSE---------QAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 01346788999999999877654 578888888999999999999999999998864
|
| >1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-27 Score=230.85 Aligned_cols=116 Identities=23% Similarity=0.415 Sum_probs=104.4
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccC------C
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------N 793 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~------~ 793 (1169)
+.+||+.||++||++|+++|+.|++||+++|. +.|+|+.+ .|.++|.++|.+||+++++|.++|||++. +
T Consensus 13 a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-ls~~g~~~---~G~~~I~~~l~~Lp~~~h~i~s~d~q~~~~~~~~~~ 88 (140)
T 1jkg_A 13 ACRAAEEFVNVYYTTMDKRRRLLSRLYMGTAT-LVWNGNAV---SGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQ 88 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcE-EEECCeee---cCHHHHHHHHHhCCCceeEEEEEEEEEcCCcccCCC
Confidence 46799999999999999999999999999864 45798655 45567899999999999999999999986 5
Q ss_pred CceEEEEEEEEEecCccccceeEEEEEEEeeC----CeEEEEcceEEeccC
Q 001060 794 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE----KGYFVLNDIFHFLDE 840 (1169)
Q Consensus 794 ~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nDifr~~~~ 840 (1169)
+||||+|+|.++.+++ ++|+|+|||+|+|++ ++|||+||||||+++
T Consensus 89 ~~ilI~V~G~~~~~~~-~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 89 TTVLVVICGSVKFEGN-KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp CEEEEEEEEEEEETTS-CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CeEEEEEEEEEEECCC-CceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 8999999999999886 799999999999974 899999999999986
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-23 Score=237.12 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=279.0
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
|.+.|..++..+... |++++|..+|++++..+|.+...|..++..+...|++++|+..|++++...|.+...|..++.
T Consensus 2 ~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 568899999988874 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001060 178 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 257 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~ 257 (1169)
++. ..|++++|+..|+++++..+........|..+..+... .
T Consensus 80 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~------------------------------ 121 (359)
T 3ieg_A 80 LLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM-------Q------------------------------ 121 (359)
T ss_dssp HHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------H------------------------------
T ss_pred HHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-------H------------------------------
Confidence 888 78999999999999988433100122222222221000 0
Q ss_pred ccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 258 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 337 (1169)
Q Consensus 258 ~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~ 337 (1169)
....+..+|...+++++|+..|
T Consensus 122 ----------------------------------------------------------~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 122 ----------------------------------------------------------RLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHccCHHHHHHHH
Confidence 0001123556677888899999
Q ss_pred HHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 338 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 417 (1169)
Q Consensus 338 e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl 417 (1169)
+++++ .+|.....|..++..+...|++++|+..|++++...|.+.++|+.++.++...|++++|...|++++
T Consensus 144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 144 DKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHH--------hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988 5777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChHH----HHHHHHHHHHHcCCHHHHHH
Q 001060 418 HVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLLE----AIIKHANMERRLGNLEDAFS 481 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~----~~~~~a~~e~r~g~~e~A~~ 481 (1169)
+.. |+....|..+ +.++...|++++|..+|+++ ++..|++.. +|..++.++...|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 987 7777766544 77789999999999999998 778898774 46678999999999999999
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 482 iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
+|++++...|. .+.+|..++.++.. .|++++|...|+++++.+|++..++..+......
T Consensus 294 ~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999998753 36789999999887 9999999999999999999999888776665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-22 Score=239.85 Aligned_cols=375 Identities=11% Similarity=0.041 Sum_probs=296.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
....+...+.+++..+|.+...|..++..+.+.|++++|+.+|++++...|.+..+|..++..+. ..|++++|+..|++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH--HHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 196 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD--RYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
+++..+. ....|..++.....+|+++.|+.+|++++...+.+.. ..|..
T Consensus 86 al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 136 (450)
T 2y4t_A 86 VIQLKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ-------------------------- 136 (450)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH--------------------------
T ss_pred HHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH--------------------------
Confidence 9995443 6788999999999999999999999999887443220 00000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
+ ..++.
T Consensus 137 ------------------------------------------l----~~~~~---------------------------- 142 (450)
T 2y4t_A 137 ------------------------------------------L----IKSDE---------------------------- 142 (450)
T ss_dssp ------------------------------------------H----HHHHH----------------------------
T ss_pred ------------------------------------------H----HHHHH----------------------------
Confidence 0 00110
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
...+...+..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|+++++.. |+++.+|..++.
T Consensus 143 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 143 --MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 12244445566778999999999999999999999999999999999999999999999999987 889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH------------ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~------------a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
++...|++++|+.+|+++ +++.|++...|..+ +.++.+.|++++|+.+|++++...|.+ ......
T Consensus 220 ~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVREC-LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI--AEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 999999999999999998 78899999888766 889999999999999999999987642 111234
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHH
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAERE 581 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~ 581 (1169)
+|..++.++.+ .|++++|..+|+++++..|++..+|..++......++ .+.+..+|++++...|+++
T Consensus 297 ~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~--------- 363 (450)
T 2y4t_A 297 SKERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYETAQEHNENDQ--------- 363 (450)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSCH---------
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcchH---------
Confidence 67778888776 9999999999999999999999999999998888887 6778999999999887664
Q ss_pred HHHHHHH------------HHHHhhC-----CHHHHHHHHHH-HHhhhCC
Q 001060 582 ELSCVFL------------EFLGLFG-----DAQLIKKAEDR-HARLFLP 613 (1169)
Q Consensus 582 ~i~~~~l------------~fe~~~G-----d~~~i~~v~~R-~~~~~~~ 613 (1169)
.++.... ++....| +.+.+++.+++ ..+..|.
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 2333333 2333344 56677777776 4444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-21 Score=218.60 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=276.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001060 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY 213 (1169)
Q Consensus 134 ~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y 213 (1169)
+...|+.++..+...|++++|+.+|++++...|.+.++|+.++..+. ..|++++|+..|+++++..+. ....|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMD---FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC---cchHHHHH
Confidence 46789999999999999999999999999999999999999999998 889999999999999996443 56889999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccc
Q 001060 214 IEYEYMQQEWSRVAMIYTRILENPI---QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE 290 (1169)
Q Consensus 214 ~~~e~~~~~~~~a~~iY~r~L~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~ 290 (1169)
+......|+++.|..+|++++...+ .+...++.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 113 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ-------------------------------------------- 113 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH--------------------------------------------
Confidence 9999999999999999999988744 21111100
Q ss_pred cCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC
Q 001060 291 VQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 370 (1169)
Q Consensus 291 ~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g 370 (1169)
+..++. ...|...+..+...|
T Consensus 114 -----------------------------l~~~~~------------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 114 -----------------------------LVKADE------------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp -----------------------------HHHHHH------------------------------HHHHHHHHHHHHHTT
T ss_pred -----------------------------HHHHHH------------------------------HHHHHHHHHHHHHcc
Confidence 000000 123556677778899
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
++++|+.+|++++...|.+..+|..++.++...|++++|..+|+++++.. |+++.+|+.++.++...|++++|+..|++
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 88999999999999999999999999999
Q ss_pred HhhhcCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 451 VHTETSPGLLEAIIKH------------ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 451 a~~~~~P~~~~~~~~~------------a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
+ +++.|++...|..+ +.++.+.|++++|..+|++++...|.. ......++..++.++.. .|+++
T Consensus 214 a-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~-~~~~~ 289 (359)
T 3ieg_A 214 C-LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV--AEYTVRSKERICHCFSK-DEKPV 289 (359)
T ss_dssp H-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHH-TTCHH
T ss_pred H-HhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHH-ccCHH
Confidence 8 78899988876544 777899999999999999999988642 11112346667888776 99999
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 519 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 519 ~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
+|..+|+++++..|++..+|..++.+....++ .+.+..+|++++...|++.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999988887 6778999999999887654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-21 Score=215.41 Aligned_cols=300 Identities=9% Similarity=0.014 Sum_probs=250.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
+...+...+.+.+.+..++..+... |++++|+.+|++++..+|.+...|..++..+...|++++|+.+|++++...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYN--CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 4466777888889999999988874 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001060 168 SVDIWLHYCIFAINTYG-DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 246 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~-~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~ 246 (1169)
+..+|+..+.++. ..+ ++++|+..|++++... +.....|..++......++++.|+.+|++++...+.+...+
T Consensus 89 ~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-- 162 (330)
T 3hym_B 89 NPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM-- 162 (330)
T ss_dssp STHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH--
T ss_pred CHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH--
Confidence 9999999999988 778 9999999999999844 44667899999999999999999999999987633211111
Q ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001060 247 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 326 (1169)
Q Consensus 247 ~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~ 326 (1169)
..+..+|..
T Consensus 163 -----------------------------------------------------------------------~~l~~~~~~ 171 (330)
T 3hym_B 163 -----------------------------------------------------------------------LYIGLEYGL 171 (330)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 112345667
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---------cCCHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---------ANYPEYWIRYV 397 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~---------~~~~e~W~~~a 397 (1169)
.+++++++..|+++++ ++|.+...|..++..+...|++++|+..|++++... +....+|..++
T Consensus 172 ~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp TTCHHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 7788888899999988 677778889999998899999999999999999886 66778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-HHcCCH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-RRLGNL 476 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e-~r~g~~ 476 (1169)
.++...|++++|+..|++++++. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA-LGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-TTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH-HccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999887 788899999999999999999999999998 788999999998888866 455554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=214.66 Aligned_cols=243 Identities=16% Similarity=0.273 Sum_probs=176.0
Q ss_pred CCCHHHHHHHHHHHHHh----CCH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHh------hcCCH-------HHHH
Q 001060 132 PLCYGYWKKYADHEARV----GSM----DKVVEVYERAVQGVTYSVDIWLHYCIFAIN------TYGDP-------ETIR 190 (1169)
Q Consensus 132 P~~~~~W~~~a~~e~~~----~~~----e~A~~l~eraL~~~P~s~~lw~~y~~~~~~------~~~~~-------e~Ar 190 (1169)
|....+|++|+++|.+. ++. ++|+.+|+++|..+|.++++|+.|+.++.. ..|+. ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 44567888888888775 233 678888888888888888888888888762 24664 7888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHH
Q 001060 191 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 270 (1169)
Q Consensus 191 ~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~ 270 (1169)
.+|++|+..+ ++.+..+|..|+.++...|++++|+.+|+++|++++.
T Consensus 85 ~~~~rAl~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------------------- 131 (308)
T 2ond_A 85 NIYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------------------------------- 131 (308)
T ss_dssp HHHHHHHTTT--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-------------------------------
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-------------------------------
Confidence 8888888732 2336678888888888888888887777777654322
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p 350 (1169)
T Consensus 132 -------------------------------------------------------------------------------- 131 (308)
T 2ond_A 132 -------------------------------------------------------------------------------- 131 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhcHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHH
Q 001060 351 LSVTELE-NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIH 428 (1169)
Q Consensus 351 l~~~~~~-~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~ 428 (1169)
+.. +|..|+.++.+.|++++|+.+|++++..+|.+..+|+.++.+... .|++++|+.+|+++++.+ |+++.+|
T Consensus 132 ----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (308)
T 2ond_A 132 ----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 206 (308)
T ss_dssp ----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred ----CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 112 466666666677777777777777777777777777766665433 577777888888887776 6777778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh---cCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTE---TSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~---~~P~-~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+.++.++.+.|++++|+.+|+++ ++ +.|+ ...+|..++.++.+.|++++|+.+++++++..|.+
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~a-l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERV-LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH-HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 77787777778888888888877 44 2453 67778888888888888888888888888877653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=211.41 Aligned_cols=304 Identities=8% Similarity=-0.015 Sum_probs=257.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001060 123 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 123 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~ 202 (1169)
.....+...|.+...+..++..+...|++++|+++|++++...|.+...|..++..+. ..|+.++|+.+|+++++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcC
Confidence 3456777789999999999999999999999999999999999999999999998888 789999999999999995443
Q ss_pred CCCCHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccc
Q 001060 203 DYLSFPLWDKYIEYEYMQQ-EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETG 281 (1169)
Q Consensus 203 d~~s~~lw~~y~~~e~~~~-~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~ 281 (1169)
...+|...+......+ +++.|..+|++++...+.+...+
T Consensus 89 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------------------- 128 (330)
T 3hym_B 89 ---NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW------------------------------------- 128 (330)
T ss_dssp ---STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH-------------------------------------
T ss_pred ---CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH-------------------------------------
Confidence 6678999999888899 99999999999987644322111
Q ss_pred hhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHH
Q 001060 282 AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN 361 (1169)
Q Consensus 282 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~ 361 (1169)
..+..+|...+++++|+..|+++++ +.+.....|..
T Consensus 129 ------------------------------------~~l~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~ 164 (330)
T 3hym_B 129 ------------------------------------IAYGHSFAVESEHDQAMAAYFTAAQ--------LMKGCHLPMLY 164 (330)
T ss_dssp ------------------------------------HHHHHHHHHHTCHHHHHHHHHHHHH--------HTTTCSHHHHH
T ss_pred ------------------------------------HHHHHHHHHccCHHHHHHHHHHHHH--------hccccHHHHHH
Confidence 1224466778889999999999998 56777788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh--------ccChHHHHHHHH
Q 001060 362 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--------KRLPEIHLFAAR 433 (1169)
Q Consensus 362 yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--------p~~~~l~~~~a~ 433 (1169)
++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|..+|++++.+.+ +....+|..++.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999763 456789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 513 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~ 513 (1169)
++...|++++|+..|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..|. .+..+..++..+...
T Consensus 245 ~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQA-LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD------DTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC------CHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHH-HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC------chHHHHHHHHHHHHH
Confidence 999999999999999998 7889999999999999999999999999999999998863 366788888776554
Q ss_pred hCCHH
Q 001060 514 SRNAE 518 (1169)
Q Consensus 514 ~g~~e 518 (1169)
.|+.+
T Consensus 318 ~g~~~ 322 (330)
T 3hym_B 318 IGDSE 322 (330)
T ss_dssp TTC--
T ss_pred hCchh
Confidence 66543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-20 Score=221.62 Aligned_cols=386 Identities=12% Similarity=0.041 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCH
Q 001060 83 GEEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE---------FPLCYGYWKKYADHEARVGSM 151 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d--~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~---------~P~~~~~W~~~a~~e~~~~~~ 151 (1169)
.-++++...++..+.. ...+..|+.++... |++++|++.|+++++. +|.....|..++.++...|++
T Consensus 33 ~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~--G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 33 DFEDKVFYRTEFQNREFKATMCNLLAYLKHLK--GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp HHHHHHHHHTTSCC---CCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 3344444444444433 34556788887774 6999999999999986 677888999999999999999
Q ss_pred HHHHHHHHHHHhccC--------CCHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---
Q 001060 152 DKVVEVYERAVQGVT--------YSVDIWLHYCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM--- 219 (1169)
Q Consensus 152 e~A~~l~eraL~~~P--------~s~~lw~~y~~~~~~-~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~--- 219 (1169)
++|+..|++++.+.+ ....++...+..+.. ..+++++|+..|++++...+. ...+|..+......
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDN 187 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcC
Confidence 999999999998642 345555554433331 345789999999999996544 55666666554333
Q ss_pred hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccccc
Q 001060 220 QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 299 (1169)
Q Consensus 220 ~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 299 (1169)
.++.+.|...|++++++.+.+...+......
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~------------------------------------------------- 218 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALK------------------------------------------------- 218 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH-------------------------------------------------
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHH-------------------------------------------------
Confidence 3455678888988888754433332222111
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHH
Q 001060 300 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379 (1169)
Q Consensus 300 ~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~ly 379 (1169)
...++...+++++++..|++++. ++|.....|..++.++...|++++++..|
T Consensus 219 --------------------~~~~~~~~~~~~~a~~~~~~al~--------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 219 --------------------LHKMREEGEEEGEGEKLVEEALE--------KAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp --------------------HHHCC------CHHHHHHHHHHH--------HCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------HHHHHhhhhHHHHHHHHHHHHHH--------hCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 11223344566777888888887 67888899999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC
Q 001060 380 ERCLIACANYPEYWIRYVLCMEAS-------------------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440 (1169)
Q Consensus 380 eraL~~~~~~~e~W~~~a~~l~~~-------------------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~ 440 (1169)
++++...|.+..+|..++.++... +.++.|...|++++++. |....+|+.+|.++...|+
T Consensus 271 ~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 271 KKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 999999999999999999876432 23567888999999887 7888999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCChHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 441 IDGARAAYQLVHTETSPGLLE---AIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 441 ~~~A~~~~~~a~~~~~P~~~~---~~~~~a~~e-~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
+++|+.+|+++ +++.+.... +++.++.+. ...|++++|+..|++++.+.+.. .. . .+.
T Consensus 350 ~~~A~~~~~ka-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~------~~----------~-~~~ 411 (472)
T 4g1t_A 350 YEEAEYYFQKE-FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS------RE----------K-EKM 411 (472)
T ss_dssp HHHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC------HH----------H-HHH
T ss_pred HHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc------HH----------H-HHH
Confidence 99999999998 677776543 456666654 46789999999999999988632 10 0 223
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 517 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
...+.++++++++.+|.+...|..++.+....|+ .+.+..+|+++|...+..|
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC-----------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCC
Confidence 5667788999999999999888877777666554 4557899999999876665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=219.19 Aligned_cols=305 Identities=12% Similarity=-0.030 Sum_probs=245.1
Q ss_pred hhHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH
Q 001060 115 DNIVKIRR-VYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI 189 (1169)
Q Consensus 115 ~~i~~Ar~-~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~A 189 (1169)
+++++|.. .|++++...|.+. ..|+.++..+.+.|++++|+.+|++++...|.+..+|..++..+. ..|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHH
Confidence 47778888 8888888888763 568889999999999999999999999999999999999888888 78899999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHH
Q 001060 190 RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAA 269 (1169)
Q Consensus 190 r~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~ 269 (1169)
+..|+++++..+ ....+|..++......|+++.|+.+|++++...+.....+.... ..
T Consensus 118 ~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~------------------ 175 (368)
T 1fch_A 118 ISALRRCLELKP---DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE-EG------------------ 175 (368)
T ss_dssp HHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------
T ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH-HH------------------
Confidence 999999998544 35678888888888889999999999998887433211110000 00
Q ss_pred HHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccC
Q 001060 270 AVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 349 (1169)
Q Consensus 270 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~ 349 (1169)
.. .. . ..........++ ..+++++++..|+++++
T Consensus 176 -----------~~--~~-----~--------------------~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~------- 209 (368)
T 1fch_A 176 -----------AG--GA-----G--------------------LGPSKRILGSLL-SDSLFLEVKELFLAAVR------- 209 (368)
T ss_dssp ------------------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHH-------
T ss_pred -----------hh--hh-----c--------------------ccHHHHHHHHHh-hcccHHHHHHHHHHHHH-------
Confidence 00 00 0 000000112344 78899999999999998
Q ss_pred CCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 350 PLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 350 pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
++|. ....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+.+|++++++. |++..+
T Consensus 210 -~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 -LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp -HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 5666 688999999999999999999999999999999999999999999999999999999999999987 889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL-----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-----------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
|+.++.++...|++++|+..|+++ +++.|++ ..+|..++.++..+|++++|..+++++++...
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999999999999999999999998 7778877 89999999999999999999999998888763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-19 Score=214.35 Aligned_cols=372 Identities=14% Similarity=0.032 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC----
Q 001060 135 YGYWKKYADHEARVGSMDKVVEVYERAVQG---------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG---- 201 (1169)
Q Consensus 135 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~---------~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g---- 201 (1169)
..++..++.++..+|++++|++.|++++.+ +|.....|..++..+. ..|++++|...|++++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccc
Confidence 567778999999999999999999999986 4566778888888887 89999999999999997532
Q ss_pred -CCCCCHHHHHHHHH--HHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCC
Q 001060 202 -TDYLSFPLWDKYIE--YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPS 278 (1169)
Q Consensus 202 -~d~~s~~lw~~y~~--~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~ 278 (1169)
.+.....++..... .....+++++|+.+|+++|++.+.+.+.++.....+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~--------------------------- 182 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS--------------------------- 182 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH---------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------
Confidence 12223344433322 223346799999999999998665544433222111
Q ss_pred ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHH
Q 001060 279 ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 358 (1169)
Q Consensus 279 e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~ 358 (1169)
..+...++.++++..|+++|+ ++|.....
T Consensus 183 -------------------------------------------~~l~~~~~~~~al~~~~~al~--------l~p~~~~~ 211 (472)
T 4g1t_A 183 -------------------------------------------YRLDNWPPSQNAIDPLRQAIR--------LNPDNQYL 211 (472)
T ss_dssp -------------------------------------------HHHHHSCCCCCTHHHHHHHHH--------HCSSCHHH
T ss_pred -------------------------------------------HHhcCchHHHHHHHHHHHHhh--------cCCcchHH
Confidence 001112233455667888887 67777777
Q ss_pred HHHHHHHH----HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 359 WHNYLDFI----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 359 W~~yl~~~----~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
|..++..+ ...+++++++.+|++++...|.+..+|..++.++...|++++|+..|++++++. |++..+|..++.+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 77765443 345788899999999999999999999999999999999999999999999988 8999999988877
Q ss_pred HHHc-------------------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 435 KEQN-------------------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 435 ~e~~-------------------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
+... +.++.|...|+++ .+++|.+..+|..++.++...|++++|+.+|++++...+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~-- 367 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-- 367 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH-HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC--
Confidence 6432 3467788899998 78899999999999999999999999999999999986531
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 575 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l 575 (1169)
.....++..++.+.....|++++|+..|++||++.|++..... ....+..++++++..+|++.
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-------------~~~~l~~~~~~~l~~~p~~~--- 430 (472)
T 4g1t_A 368 -VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-------------MKDKLQKIAKMRLSKNGADS--- 430 (472)
T ss_dssp -HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------------HHHHHHHHHHHHHHHCC-CT---
T ss_pred -hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------------HHHHHHHHHHHHHHhCCCCH---
Confidence 1223456778777666689999999999999999998864321 13456778889999888776
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001060 576 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 576 ~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~ 612 (1169)
+.|..........|+.+.+.+.++|+.++-+
T Consensus 431 ------~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 431 ------EALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp ------THHHHHHHHHHHHHHCC--------------
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3677777777788888888888888877643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=215.23 Aligned_cols=292 Identities=7% Similarity=-0.073 Sum_probs=234.9
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001060 122 RVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197 (1169)
Q Consensus 122 ~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl 197 (1169)
..+++.+...+.+. ..|+.++..+.+.|++++|+.+|++++...|.+...|..++..+. ..|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 44455555555554 449999999999999999999999999999999999999999988 7899999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCC
Q 001060 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277 (1169)
Q Consensus 198 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~ 277 (1169)
+..+ .....|..++..+...|+++.|+.+|+++++..+.....++.....
T Consensus 127 ~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------------------------- 176 (365)
T 4eqf_A 127 ELQP---NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS--------------------------- 176 (365)
T ss_dssp HHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCC---CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc---------------------------
Confidence 9544 4678899999988999999999999999988744322111111000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh--c
Q 001060 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--E 355 (1169)
Q Consensus 278 ~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~ 355 (1169)
..+...+..+|...+++++++..|+++++ ++|. .
T Consensus 177 ------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~ 212 (365)
T 4eqf_A 177 ------------------------------------PGLTRRMSKSPVDSSVLEGVKELYLEAAH--------QNGDMID 212 (365)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHH--------HSCSSCC
T ss_pred ------------------------------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHH--------hCcCccC
Confidence 00112224466778899999999999998 4555 6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+.+|++++++. |++..+|+.++.++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 436 EQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
...|++++|+..|+++ +++.|+ +..+|..++.++..+|+.+.+..++++.+...
T Consensus 292 ~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 292 INLGAYREAVSNFLTA-LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHTCCHHHHHHHHHH-HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHCCCHHHHHHHHHHH-HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 9999999999999998 677766 36789999999999999999998888766654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=212.52 Aligned_cols=315 Identities=12% Similarity=0.067 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhccCCC----HHHHHHHHHHHHhhcCCHHHHHHH
Q 001060 118 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE-VYERAVQGVTYS----VDIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 118 ~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~-l~eraL~~~P~s----~~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
.++...++.+....|.+ . ...+++++|++ .|++++...|.+ ...|+..+..+. ..|++++|+..
T Consensus 18 ~~~~~~~~~~~~~~~~~-~---------~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~ 86 (368)
T 1fch_A 18 DKLQAELEEMAKRDAEA-H---------PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRL-QEGDLPNAVLL 86 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCchh-h---------HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHH-HCCCHHHHHHH
Confidence 33444555555555553 2 23478999999 999999998876 456888888888 88999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 272 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~ 272 (1169)
|+++++. ++....+|...+......|+++.|..+|+++++..+.+...++
T Consensus 87 ~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------- 136 (368)
T 1fch_A 87 FEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM--------------------------- 136 (368)
T ss_dssp HHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---------------------------
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHH---------------------------
Confidence 9999994 4446788999999999999999999999999877444322221
Q ss_pred HhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC
Q 001060 273 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352 (1169)
Q Consensus 273 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~ 352 (1169)
.+..+|...+++++|+..|+++++ ++
T Consensus 137 ----------------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 162 (368)
T 1fch_A 137 ----------------------------------------------ALAVSFTNESLQRQACEILRDWLR--------YT 162 (368)
T ss_dssp ----------------------------------------------HHHHHHHHTTCHHHHHHHHHHHHH--------TS
T ss_pred ----------------------------------------------HHHHHHHHcCCHHHHHHHHHHHHH--------hC
Confidence 223456667788888888888887 44
Q ss_pred hhcHHHHH----------------HHHHHHHHcCChHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHH
Q 001060 353 VTELENWH----------------NYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALA 414 (1169)
Q Consensus 353 ~~~~~~W~----------------~yl~~~~~~gd~~~a~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~ 414 (1169)
|.....|. .+..++ ..|++++|+.+|++++...|. ...+|..++.++...|++++|+.+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444443 233444 789999999999999999999 89999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC
Q 001060 415 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 494 (1169)
Q Consensus 415 rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~ 494 (1169)
+++.+. |+++.+|+.++.++...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+.+|++++...|...
T Consensus 242 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 242 AALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA-LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 999987 889999999999999999999999999998 788999999999999999999999999999999999987541
Q ss_pred c-----cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 495 H-----SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 495 ~-----~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
. .+....+|..++..+.. .|++++|..+++++++..
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSM-LGQSDAYGAADARDLSTL 360 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHH-HTCGGGHHHHHTTCHHHH
T ss_pred CccccccchhhHHHHHHHHHHHH-hCChHhHHHhHHHHHHHH
Confidence 1 12236789999999877 999999999999888653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-19 Score=201.36 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=240.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
+.+.|..++..+... +++++|+.+|++++..+|.+...|..++..+...|++++|+++|++++...|.+...|..++.
T Consensus 20 ~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKL--ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 556788888888874 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001060 178 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 257 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~ 257 (1169)
.+. ..|++++|+..|++++...+.+. .+|..+... .+.. ...
T Consensus 98 ~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~--~~~------------- 139 (327)
T 3cv0_A 98 SHT-NEHNANAALASLRAWLLSQPQYE---QLGSVNLQA-------------------DVDI--DDL------------- 139 (327)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTSTTTT---TC------------------------------------------------
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCCccH---HHHHHHhHH-------------------HHHH--HHH-------------
Confidence 988 88999999999999998654432 222221100 0000 000
Q ss_pred ccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001060 258 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE-MYKKAKEFDSKIIG 336 (1169)
Q Consensus 258 ~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~-~y~~~~~~~~ai~~ 336 (1169)
. ..... +|...+++++++..
T Consensus 140 ----------------------------------------------------------~-~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 140 ----------------------------------------------------------N-VQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp -----------------------------------------------------------------CCTTSHHHHHHHHHH
T ss_pred ----------------------------------------------------------H-HHHHhHHHHHcccHHHHHHH
Confidence 0 00001 23445677888888
Q ss_pred HHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 337 ~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
|+++++ .++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|..+|+++
T Consensus 161 ~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 161 LHAALE--------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999987 566778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++.. |++..+|+.++.++...|++++|+..|+++ +++.|+ +..+|..++.++.++|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA-IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9987 889999999999999999999999999998 778898 89999999999999999999999999
Q ss_pred HHHHhhh
Q 001060 485 QAIAIEK 491 (1169)
Q Consensus 485 ~Al~~~~ 491 (1169)
+++...+
T Consensus 311 ~~l~~~~ 317 (327)
T 3cv0_A 311 QNVEPFA 317 (327)
T ss_dssp CCSHHHH
T ss_pred HHHHhcc
Confidence 9988775
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=207.14 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=231.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001060 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217 (1169)
Q Consensus 138 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e 217 (1169)
|+.........+....+...|.......+.+...|+..+..+. ..|++++|+.+|+++++..+ ....+|..++...
T Consensus 34 wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~ 109 (365)
T 4eqf_A 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRL-KEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQ 109 (365)
T ss_dssp -------------------CCCCCSSCTTTTCTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHHHHHhhhcccCCcccchhHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHH
Confidence 5554444333343333333333332222233455999998888 78999999999999999554 4678999999999
Q ss_pred HHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccc
Q 001060 218 YMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATE 297 (1169)
Q Consensus 218 ~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e 297 (1169)
...|+++.|+.+|++++...+.+...+
T Consensus 110 ~~~g~~~~A~~~~~~al~~~p~~~~~~----------------------------------------------------- 136 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLELQPNNLKAL----------------------------------------------------- 136 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHH-----------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHH-----------------------------------------------------
Confidence 999999999999999988744432222
Q ss_pred ccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH----------HHHHH
Q 001060 298 QTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY----------LDFIE 367 (1169)
Q Consensus 298 ~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y----------l~~~~ 367 (1169)
..+..+|...+++++|+..|+++++ ++|.....|..+ +..+.
T Consensus 137 --------------------~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 137 --------------------MALAVSYTNTSHQQDACEALKNWIK--------QNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp --------------------HHHHHHHHHTTCHHHHHHHHHHHHH--------HCHHHHCC-------------------
T ss_pred --------------------HHHHHHHHccccHHHHHHHHHHHHH--------hCccchHHHhhhccchHHHHHHHHHHh
Confidence 1223456777888899999999988 566666666655 77778
Q ss_pred HcCChHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
..|++++|+.+|++++...|. ++.+|..++.++...|++++|+.+|++++++. |++..+|..++.++...|++++|+
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999999999999 89999999999999999999999999999988 889999999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc------CchHHHHHHHHHHHHHHhCCHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS------QTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~------~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
..|+++ +++.|++..+|..++.++.++|++++|+.+|++++.+.|..... .....+|..++..+.. .|+.+.
T Consensus 268 ~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 345 (365)
T 4eqf_A 268 EAYTRA-LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL-MDQPEL 345 (365)
T ss_dssp HHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH-HTCHHH
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH-cCcHHH
Confidence 999998 78899999999999999999999999999999999998753221 1124678888888766 999999
Q ss_pred HHHHHHHHhhhc
Q 001060 520 ARQILVDSLDHV 531 (1169)
Q Consensus 520 Ar~i~~kAl~~~ 531 (1169)
|.+++++.+...
T Consensus 346 a~~~~~~~l~~~ 357 (365)
T 4eqf_A 346 FQAANLGDLDVL 357 (365)
T ss_dssp HHHHHTTCCGGG
T ss_pred HHHHHHhhHHHH
Confidence 999988877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-19 Score=205.60 Aligned_cols=107 Identities=7% Similarity=0.043 Sum_probs=97.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhccCCCH
Q 001060 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVYERAVQGVTYSV 169 (1169)
Q Consensus 91 al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~eraL~~~P~s~ 169 (1169)
+|..+|.+.++|..++.++... +++++|+.+|+++|.++|.+..+|..++.++...|+ +++|+..|+++|...|.+.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~--g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRD--ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhCChhhHHHHHHHHHHHHHC--CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 5788999999999999999884 599999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 001060 170 DIWLHYCIFAINTYGDPETIRRLFERGLAYV 200 (1169)
Q Consensus 170 ~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~ 200 (1169)
.+|.+.+..+. ..|++++|+..|+++|...
T Consensus 167 ~a~~~~g~~~~-~~g~~~eAl~~~~kal~ld 196 (382)
T 2h6f_A 167 QVWHHRRVLVE-WLRDPSQELEFIADILNQD 196 (382)
T ss_dssp HHHHHHHHHHH-HHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhC
Confidence 99999988887 7788888888888887743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-16 Score=192.13 Aligned_cols=384 Identities=8% Similarity=-0.053 Sum_probs=269.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 001060 84 EEDRLWNIVKANSSDFSAWTALLEETEKLA--QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEV 157 (1169)
Q Consensus 84 ~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l 157 (1169)
.++.++++.+ +.|.+++..|+..+..-. .+++++|...|++++.. .+...+..++.++.. .+++++|++.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3555555544 567788888887776610 14788888888888775 567778888888887 7788888888
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHH
Q 001060 158 YERAVQGVTYSVDIWLHYCIFAINT---YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIY 230 (1169)
Q Consensus 158 ~eraL~~~P~s~~lw~~y~~~~~~~---~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~----~~~~~~a~~iY 230 (1169)
|++++.. .+...++.++.++..- .+++++|+..|+++++. + ....+..+..+... .+++++|+..|
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8888764 4677777777776621 56788888888888763 2 23445555555554 56788888888
Q ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001060 231 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 310 (1169)
Q Consensus 231 ~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 310 (1169)
+++++.. +...++.....+..... .....+++.....+.... + +.
T Consensus 175 ~~a~~~~--~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~-----~--------------------------~~ 219 (490)
T 2xm6_A 175 SKAAEQG--NVWSCNQLGYMYSRGLG--VERNDAISAQWYRKSATS-----G--------------------------DE 219 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHT-----T--------------------------CH
T ss_pred HHHHHCC--CHHHHHHHHHHHhcCCC--CCcCHHHHHHHHHHHHHC-----C--------------------------CH
Confidence 8887762 23333333333322110 001122222111111000 0 00
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 001060 311 EELEKYIAVREEMYKK----AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERC 382 (1169)
Q Consensus 311 ~~~~k~i~~~~~~y~~----~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~----~gd~~~a~~lyera 382 (1169)
.....+..+|.. .+++++++..|++++.. .....+..++.++.. .+++++|+.+|+++
T Consensus 220 ----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 220 ----LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp ----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 022233445554 56788899999999862 345678888888777 78999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC---CHHHHHHHHHHHhhh
Q 001060 383 LIACANYPEYWIRYVLCMEAS-----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---DIDGARAAYQLVHTE 454 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~~-----g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g---~~~~A~~~~~~a~~~ 454 (1169)
+.. .+++.++.++.++... +++++|+..|+++++. .++..++.++.++...| ++++|+..|+++ .+
T Consensus 286 ~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a-~~ 359 (490)
T 2xm6_A 286 AEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKA-AA 359 (490)
T ss_dssp HTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HH
T ss_pred HHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH-HH
Confidence 865 6789999999999887 8999999999999874 56789999999998866 889999999998 44
Q ss_pred cCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Q 001060 455 TSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDS 527 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kA 527 (1169)
. ++..+++.++.++.. .+++++|..+|+++++... +..+..++.++.. ..+++++|+..|++|
T Consensus 360 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 360 K--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3 678999999999998 8999999999999998642 5678888888664 268999999999999
Q ss_pred hhhcCC---CHHHHHHHHH
Q 001060 528 LDHVQL---SKPLLEALIH 543 (1169)
Q Consensus 528 l~~~p~---s~~l~~~~a~ 543 (1169)
++..|+ +...+..+..
T Consensus 430 ~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 430 STNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHCCHHHHHHHHHHHTT
T ss_pred HHCCCCCcCCHHHHHHHHh
Confidence 999854 5555444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-18 Score=194.23 Aligned_cols=290 Identities=10% Similarity=0.026 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001060 135 YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYI 214 (1169)
Q Consensus 135 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~ 214 (1169)
...|+..+..+...|++++|+.+|++++...|.+...|..++..+. ..|++++|+..|+++++..+ ....+|..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDP---KDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCc---CCHHHHHHHH
Confidence 4568899999999999999999999999999999999999999888 88999999999999999644 3677888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCc
Q 001060 215 EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPD 294 (1169)
Q Consensus 215 ~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 294 (1169)
......|+++.|..+|++++...+.....+..
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 128 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSV------------------------------------------------ 128 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH------------------------------------------------
Confidence 88888999999999999988663321000000
Q ss_pred cccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH-HH-HHHHcCCh
Q 001060 295 ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY-LD-FIERDGDF 372 (1169)
Q Consensus 295 ~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y-l~-~~~~~gd~ 372 (1169)
+.. . . +.....+ .+ +. .+...|++
T Consensus 129 ---------------------~~~----~-------------~---------------~~~~~~~-~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 129 ---------------------NLQ----A-------------D---------------VDIDDLN-VQSEDFFFAAPNEY 154 (327)
T ss_dssp -----------------------------------------------------------------------CCTTSHHHH
T ss_pred ---------------------HhH----H-------------H---------------HHHHHHH-HHHHhHHHHHcccH
Confidence 000 0 0 0000001 11 11 23456788
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 373 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 373 ~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
++|+..|++++..+|.+..+|..++.++...|++++|+.+|+++++.. |++..+|..++.++...|++++|+.+|+++
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a- 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA- 232 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999987 889999999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc------hHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 453 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT------LPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~------~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+++.|++..+|..++.++.+.|++++|+.+|++++...+....... .+.+|..++.++.. .|++++|..++++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV-MNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH-TTCHHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 7889999999999999999999999999999999999864211111 46788899998877 9999999999999
Q ss_pred HhhhcCC
Q 001060 527 SLDHVQL 533 (1169)
Q Consensus 527 Al~~~p~ 533 (1169)
+++..|+
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 9887653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-18 Score=199.63 Aligned_cols=256 Identities=9% Similarity=0.002 Sum_probs=196.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCCC
Q 001060 126 AFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-PETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 126 ~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~-~e~Ar~~~erAl~~~g~d~ 204 (1169)
.+|...|.+..+|..++.++.+.|++++|+++|+++|.+.|.+..+|...+.++. ..|+ +++|+..|+++|...+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P--- 163 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQP--- 163 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCT---
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCC---
Confidence 3466788889999999999999999999999999999999999999999988887 6664 7777777777766322
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhh
Q 001060 205 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEV 284 (1169)
Q Consensus 205 ~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~ 284 (1169)
T Consensus 164 -------------------------------------------------------------------------------- 163 (382)
T 2h6f_A 164 -------------------------------------------------------------------------------- 163 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHH
Q 001060 285 KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLD 364 (1169)
Q Consensus 285 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~ 364 (1169)
.+..+|..++.
T Consensus 164 ---------------------------------------------------------------------~~~~a~~~~g~ 174 (382)
T 2h6f_A 164 ---------------------------------------------------------------------KNYQVWHHRRV 174 (382)
T ss_dssp ---------------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---------------------------------------------------------------------CCHHHHHHHHH
Confidence 22334444455
Q ss_pred HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH-cCCHHH
Q 001060 365 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ-NGDIDG 443 (1169)
Q Consensus 365 ~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~-~g~~~~ 443 (1169)
.+...|++++|+..|+++|..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|+.++.++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 55556677777777778887888888888888877777778888888888888776 7777788888777777 555466
Q ss_pred H-----HHHHHHHhhhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh--
Q 001060 444 A-----RAAYQLVHTETSPGLLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS-- 514 (1169)
Q Consensus 444 A-----~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g--~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~-- 514 (1169)
| +..|+++ ++++|++..+|+.++.++...| ++++|+..++++ +..+ ..+.++..++.++....
T Consensus 254 A~~~~el~~~~~A-l~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p------~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 254 AVLEREVQYTLEM-IKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH------SSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp HHHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC------CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC------CCHHHHHHHHHHHHHHhcc
Confidence 6 4778887 7788888888888888887777 578888888776 4432 33667777787776621
Q ss_pred -----CC-HHHHHHHHHHH-hhhcCCCHHHHHHHHH
Q 001060 515 -----RN-AEKARQILVDS-LDHVQLSKPLLEALIH 543 (1169)
Q Consensus 515 -----g~-~e~Ar~i~~kA-l~~~p~s~~l~~~~a~ 543 (1169)
++ +++|+++|+++ ++++|....+|..++.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 23 59999999999 9999999999975554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-15 Score=177.77 Aligned_cols=373 Identities=9% Similarity=-0.039 Sum_probs=277.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh----cCCHHHHHH
Q 001060 120 IRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT----YGDPETIRR 191 (1169)
Q Consensus 120 Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~----~~~~e~Ar~ 191 (1169)
+...++++.. +.+...+..++.++.. .+++++|+..|++++.. .+.+.++.++.++. . .++.++|+.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 3455555544 6788999999999998 89999999999999986 68899999998888 5 789999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHH
Q 001060 192 LFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVD 267 (1169)
Q Consensus 192 ~~erAl~~~g~d~~s~~lw~~y~~~e~~----~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~ 267 (1169)
.|+++++. + ....+..+..+... .+++++|...|++++... +...++.....+...... ....+++.
T Consensus 101 ~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~--~~d~~~A~ 171 (490)
T 2xm6_A 101 WYKKAALK-G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGV--TRDYVMAR 171 (490)
T ss_dssp HHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS--CCCHHHHH
T ss_pred HHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC--CCCHHHHH
Confidence 99999983 2 34556666666666 679999999999999873 234444444444321110 01123332
Q ss_pred HHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Q 001060 268 AAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK----AKEFDSKIIGFETAIRR 343 (1169)
Q Consensus 268 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~----~~~~~~ai~~~e~al~r 343 (1169)
......... + +. .....+..+|.. .+++++++..|+++++.
T Consensus 172 ~~~~~a~~~-----~--------------------------~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 172 EWYSKAAEQ-----G--------------------------NV----WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHT-----T--------------------------CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-----C--------------------------CH----HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 211111100 0 00 123344567776 78899999999999872
Q ss_pred CCcccCCCChhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 001060 344 PYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALAR 415 (1169)
Q Consensus 344 ~~~~v~pl~~~~~~~W~~yl~~~~~----~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~----~g~~e~A~~vl~r 415 (1169)
.....+..++.++.. .+++++++.+|++++.. .+++.++.++.++.. .+++++|+..|++
T Consensus 217 ----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 217 ----------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 245678888888776 78999999999999865 678899999999988 7899999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQN-----GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAI 487 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~-----g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g---~~e~A~~iy~~Al 487 (1169)
+++. .++..++.++.++... +++++|+..|+++ .+. ++...++.++.++.+.| ++++|+.+|++++
T Consensus 285 a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a-~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS-AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH-HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 9863 5788999999999988 8999999999998 443 56788999999988866 7899999999999
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh-CCChhHHHHHHHHHHH
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI-QSSPKQIDFLEQLVDK 563 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~-~~~~~~~~~~r~l~er 563 (1169)
+... +..+..++.++.. ..+++++|...|++|++.. +...+..+..+... .+...+.+.+...|++
T Consensus 359 ~~~~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 359 AKGE--------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8741 5678888887654 1578999999999999864 45555555555443 3333347788999999
Q ss_pred HhhcCC
Q 001060 564 FLMSNS 569 (1169)
Q Consensus 564 al~~~~ 569 (1169)
++...+
T Consensus 429 A~~~~~ 434 (490)
T 2xm6_A 429 ASTNDM 434 (490)
T ss_dssp HHHHHC
T ss_pred HHHCCC
Confidence 988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-17 Score=175.25 Aligned_cols=198 Identities=13% Similarity=0.054 Sum_probs=173.4
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
.+...|..++..+.+.|++++|+..|+++|...|.++++|+.++.++...|++++|+..|++++++. |++..+|+.++.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001060 434 FKEQN-----------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 502 (1169)
Q Consensus 434 ~~e~~-----------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l 502 (1169)
++... |++++|+..|+++ ++++|++..+|+.++.++...|++++|+..|++++++. .. +.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDA-ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT------PEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHH
Confidence 99999 9999999999998 88999999999999999999999999999999999987 32 678
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH
Q 001060 503 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 564 (1169)
Q Consensus 503 ~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~era 564 (1169)
+..++.++.. .|++++|+..|+++++..|++..++..++.+....++ .+.+..+|+++
T Consensus 154 ~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~ 211 (217)
T 2pl2_A 154 RSALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHH
Confidence 9999999877 9999999999999999999999999999988888776 44466666655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=171.34 Aligned_cols=238 Identities=11% Similarity=-0.009 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 170 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 170 (1169)
..+.|..++..+... |++++|+.+|++++..+ .+..+|..++..+...|++++|+++|++++...|.+ ..
T Consensus 4 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKA--RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 356677777777663 47777777777777777 777777777777777777777777777777776655 56
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 250 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~ 250 (1169)
+|...+..+. ..+++++|+..|++++...+. . .
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~----~-------~----------------------------------- 113 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT----A-------D----------------------------------- 113 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC----H-------H-----------------------------------
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCch----h-------H-----------------------------------
Confidence 6666666666 566777777777776663321 0 0
Q ss_pred HHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 001060 251 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 330 (1169)
Q Consensus 251 ~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~ 330 (1169)
++...+++
T Consensus 114 ------------------------------------------------------------------------~~~~~~~~ 121 (258)
T 3uq3_A 114 ------------------------------------------------------------------------ILTKLRNA 121 (258)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHhHH
Confidence 11222334
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++++..|++++. .++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+
T Consensus 122 ~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 122 EKELKKAEAEAY--------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH--------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 445555666655 566667778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHH
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHA 467 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a 467 (1169)
..|+++++.. |++..+|+.++.++...|++++|+..|+++ +++. |++..++..+.
T Consensus 194 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 194 ADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhChhhcCCCchHHHHHHHH
Confidence 8888888876 778888888888888888888888888887 5666 77666665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-17 Score=177.64 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
.|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++++. |.+..+|+.++.....
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 355556666777888899999999999999999999999999999999999999999999876 8889999999955555
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHHH
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~---~e~A~~iy~~Al~~~~~~~~--~~~~~~l~~~~a~~~~~ 512 (1169)
.+++++|+.+|+++ +++.|++...|+.++.++...++ +++|+..|+++++....... ......+|..++.++..
T Consensus 155 ~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKV-LELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 66999999999998 78899999999999999998888 88899999999998632111 01134577888888776
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
.|++++|+..|+++++.+|++...+.....+...
T Consensus 234 -~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 234 -NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred -cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 9999999999999999999999888766655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-16 Score=181.51 Aligned_cols=328 Identities=9% Similarity=-0.028 Sum_probs=209.3
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc------C
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC----YGYWKKYADHEARVGSMDKVVEVYERAVQGV------T 166 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~----~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~------P 166 (1169)
.....|..++..+... |++++|+.+|++++...|.+ ..+|..++..+...|++++|+..|++++... |
T Consensus 7 ~~~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455666777776663 47777777777777777776 3567777777777777777777777777652 3
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001060 167 YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 246 (1169)
Q Consensus 167 ~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~ 246 (1169)
....+|..++.++. ..|++++|+..|++++...+.. +.......++ ..+..+|.
T Consensus 85 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~~--------~~l~~~~~ 138 (406)
T 3sf4_A 85 GEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISREL-----------------NDKVGEARAL--------YNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-----------------TCHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhc-----------------ccccchHHHH--------HHHHHHHH
Confidence 34556666666665 5677777777777776633210 0000000000 00111111
Q ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001060 247 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 326 (1169)
Q Consensus 247 ~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~ 326 (1169)
....+.. . ... .. +.. .. . ..
T Consensus 139 ~~g~~~~------~--------------------~~~-~~---------~~~--------~~-~--------------~a 159 (406)
T 3sf4_A 139 AKGKSFG------C--------------------PGP-QD---------VGE--------FP-E--------------EV 159 (406)
T ss_dssp HHHHTCC-------------------------------------------CC--------CC-H--------------HH
T ss_pred HcCCccc------c--------------------ccc-ch---------hhh--------hh-h--------------hH
Confidence 1111000 0 000 00 000 00 0 01
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH------HHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCM 400 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e------~W~~~a~~l 400 (1169)
...+++++..|++++.. +......+.....|..++..+...|++++|+..|++++..++...+ +|..++.++
T Consensus 160 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 11245555555555541 0001123445667888899999999999999999999998775544 899999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHAN 468 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~ 468 (1169)
...|++++|...|++++.+. +.. ..++..++.++...|++++|...|+++ +++.+. ...++..++.
T Consensus 238 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999887 443 678888999999999999999999997 444332 2667899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
++...|++++|+.+|++++.+.+..........++..++.++.. .|+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 362 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV-LGL 362 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH-hhH
Confidence 99999999999999999999865432222334455666666554 443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=170.84 Aligned_cols=194 Identities=18% Similarity=0.128 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++..+...+++++|+..|+++|+ ++|.+...|..++..+.+.|++++|+..|++++...|.+.+.|+.++
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALK--------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456678889999999999999999 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-----------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 398 LCMEAS-----------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 398 ~~l~~~-----------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
.++... |++++|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++ ++..+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA-LALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH-Hhcc-cchHHHHHH
Confidence 999999 99999999999999988 899999999999999999999999999998 7788 999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
+.++...|++++|+..|++++...|+ .+.++..++.++.. .|++++|+..|+++-.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK------DLDLRVRYASALLL-KGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-ccCHHHHHHHHHHHhh
Confidence 99999999999999999999999864 36788889888776 9999999999998754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=171.24 Aligned_cols=141 Identities=17% Similarity=0.093 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 402 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~ 402 (1169)
+|...+++++|+..|+++++ ++|.....|..++......+++++|+..|++++...|.+...|+.++.++..
T Consensus 117 ~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIR--------PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCC--------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44555666666677777766 4566677777777333344589999999999999999999999999988888
Q ss_pred cCC---hHHHHHHHHHHHHHhhc--c-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 403 SGS---MDLAHNALARATHVFVK--R-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 403 ~g~---~e~A~~vl~rAl~~~~p--~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
.++ +++|+..|++++++... + ...+|..++.++...|++++|+..|+++ ++++|++..++..+..+...
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI-LALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHC-----
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCccHHHHHHHhhhhhcc
Confidence 887 88899999999887621 1 1257777888888888888888888887 77888888887776665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=168.56 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.+...|...+++++|+..|+++++ .+|.....|..++..+...|++++|+..|++++...|.+..+|..++.
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIE--------ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------CCTTHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345677888999999999999998 677889999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
++...|++++|+.+|+++++.. |++..+|+.++.++...|++++|+.+|+++ +++.|++..+|+.++.++.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA-VELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999987 889999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
|+.+|++++...+. .+.+|..++.++.. .|++++|+.+|+++++..|++...+..+..+....
T Consensus 178 A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG------HADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCcc------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 99999999998753 26688889988877 99999999999999999999999988777666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-16 Score=180.55 Aligned_cols=295 Identities=9% Similarity=-0.028 Sum_probs=211.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG------ 164 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~------ 164 (1169)
++.....+..++..+... |++++|+.+|++++...|.+. .+|..++.++...|++++|+..|++++..
T Consensus 44 ~~~~~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNA--GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 344456667777777774 599999999999999999986 57889999999999999999999999887
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001060 165 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 244 (1169)
Q Consensus 165 ~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~ 244 (1169)
.+....+|..++.++. ..|++++|+..|++++..... .++......
T Consensus 122 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~---------------- 167 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQ-----------------LGDRLSEGR---------------- 167 (411)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH-----------------HTCHHHHHH----------------
T ss_pred chHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH-----------------hhchHHHHH----------------
Confidence 3555666777776666 667777777777777652110 000000000
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH
Q 001060 245 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY 324 (1169)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y 324 (1169)
.+..+..+|
T Consensus 168 -----------------------------------------------------------------------~~~~l~~~~ 176 (411)
T 4a1s_A 168 -----------------------------------------------------------------------ALYNLGNVY 176 (411)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 011112223
Q ss_pred HHHHH----------HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cC
Q 001060 325 KKAKE----------FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC------AN 388 (1169)
Q Consensus 325 ~~~~~----------~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~------~~ 388 (1169)
...++ +.+++.. +++|+..|++++... +.
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~-----------------------------------~~~A~~~~~~al~~~~~~~~~~~ 221 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEA-----------------------------------LTRAVEFYQENLKLMRDLGDRGA 221 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCcccccccchhhhhhhhHH-----------------------------------HHHHHHHHHHHHHHHHHcCCHHH
Confidence 33333 2333333 344455555555442 23
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC----
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---- 458 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---- 458 (1169)
...+|..++.++...|++++|+..|++++.+. +... .++..++.++...|++++|+..|+++ +++.+.
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 299 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT-LALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHHHHHcCCH
Confidence 34689999999999999999999999999987 3333 38888999999999999999999998 454443
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 459 --LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 459 --~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
...+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+..|++++++....
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhc
Confidence 267889999999999999999999999999875432223334577888888776 999999999999999887643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=158.74 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=163.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
...+|..++..+.+.|++++|+..|+++|..+|.+.++|..++.++...|++++|+..+.+++... ++...++..++.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
+...++++.|...+.++ .++.|.+..+|..++.++.++|++++|+..|+++++..|. .+.+|..++.++.. .
T Consensus 83 ~~~~~~~~~a~~~~~~a-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~-~ 154 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRA-IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEG-K 154 (184)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-T
T ss_pred HHHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------hhhHHHHHHHHHHH-C
Confidence 99999999999999998 7889999999999999999999999999999999999864 37789999999887 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHH
Q 001060 515 RNAEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
|++++|+..|++||+.+|++..+
T Consensus 155 g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCccCHHH
Confidence 99999999999999999976543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=169.29 Aligned_cols=143 Identities=11% Similarity=-0.058 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---- 459 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---- 459 (1169)
...+|..++.++...|++++|...|++++.+.... ...++..++.++...|++++|..+|+++ +++.+..
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~ 260 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHhhcchh
Confidence 34588899999999999999999999999876321 1238888999999999999999999997 4444433
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 460 --LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 460 --~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
..++..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+..|+++++..+.
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999999875432223334567888888777 99999999999999987754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=174.07 Aligned_cols=308 Identities=11% Similarity=-0.005 Sum_probs=214.3
Q ss_pred CCCchHHHHHHHHHHhCCCC----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Q 001060 79 PAMSGEEDRLWNIVKANSSD----FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE------FPLCYGYWKKYADHEARV 148 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d----~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~------~P~~~~~W~~~a~~e~~~ 148 (1169)
+.++.++..|+++++.+|.+ ...|..|+..+... |++++|..+|++++.. .|.....|..++.++...
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 56788999999999999999 46888999998885 5999999999999987 455678999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 001060 149 GSMDKVVEVYERAVQGVTYS------VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 222 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s------~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~ 222 (1169)
|++++|+..|++++...+.. ..+|..++.++. ..|+...+.. . ...+.. +......
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~--~---~~~~~~------------~~~a~~~ 162 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPG--P---QDVGEF------------PEEVRDA 162 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC------------CCC------------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HcCCcccccc--c---chhhhh------------hhhHHHH
Confidence 99999999999999987532 223444443333 2222000000 0 000000 0011112
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCc
Q 001060 223 WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKP 302 (1169)
Q Consensus 223 ~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~ 302 (1169)
++.|...|++++.+-.. . .
T Consensus 163 ~~~A~~~~~~al~~~~~-----------~---~----------------------------------------------- 181 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTA-----------L---G----------------------------------------------- 181 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-----------T---T-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHh-----------c---c-----------------------------------------------
Confidence 55555555555432100 0 0
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 303 VSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERC 382 (1169)
Q Consensus 303 ~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyera 382 (1169)
+.......+..+..+|...+++++++..|+++++. ....+........|..++..+...|++++|+..|+++
T Consensus 182 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 182 ------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI--AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00000112333456778888999999999998862 0000111223347888888889999999999999999
Q ss_pred HHhccCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 383 LIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 383 L~~~~~~------~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+...+.. ..+|..++.++...|++++|...|++++.+.... ...++..++.++...|++++|+..|+++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988766 6799999999999999999999999999976321 2668889999999999999999999997
Q ss_pred hhhc------CCChHHHHHHHHHHHHHcCCH
Q 001060 452 HTET------SPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 452 ~~~~------~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+++ .+....++..++.++...|+.
T Consensus 334 -l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 334 -LEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 443 233455677777777777665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-15 Score=161.65 Aligned_cols=223 Identities=9% Similarity=0.028 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-------
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY------- 389 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~------- 389 (1169)
+..++..|...+++++|+..|+++++ ++ .....|..++..+...|++++|+..|++++...|..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWE--------LH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--------hh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 34456788889999999999999998 34 567889999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
..+|..++.++...|++++|+..|++++.+. +. +.++...|++++|...|+++ +..+|.+..+|..++.+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RT--------ADILTKLRNAEKELKKAEAE-AYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--------HHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-ch--------hHHHHHHhHHHHHHHHHHHH-HHcCcchHHHHHHHHHH
Confidence 7999999999999999999999999999976 33 34556677889999999998 78899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
+...|++++|+.+|++++...+. .+.+|..++.++.. .|++++|...|+++++..|++...|..++......+
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998753 36788899988877 999999999999999999999999998888888888
Q ss_pred ChhHHHHHHHHHHHHhhcC
Q 001060 550 SPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 550 ~~~~~~~~r~l~eral~~~ 568 (1169)
+ .+.+..+|++++...
T Consensus 222 ~---~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 E---YASALETLDAARTKD 237 (258)
T ss_dssp C---HHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhC
Confidence 7 556788888887765
|
| >1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-17 Score=169.13 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=99.1
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcc------------------------------------cch
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST------------------------------------ESA 763 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~------------------------------------~~~ 763 (1169)
..+|+..||++||++++++|..|..||+++|.|+ |.++.. ...
T Consensus 10 ~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~ 88 (221)
T 1of5_A 10 LGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFS-VSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLS 88 (221)
T ss_dssp TCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EEECCC--------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEE-EEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhc
Confidence 3569999999999999999999999999986554 555311 134
Q ss_pred hhHHHHHHHHhcCCCcceeE------eeeeccccCC-CceEEEEEEEEEecCcc--------------------------
Q 001060 764 SSMLDIHSLVISLNFTAIEI------KTINSLGSWN-GGVLVMVSGSVKTKEFC-------------------------- 810 (1169)
Q Consensus 764 ~~~~~I~~~~~~l~~~~~~i------~~~d~q~~~~-~~ilv~v~G~~~~~~~~-------------------------- 810 (1169)
.|.++|.++|.+||.+.+.| .++|||+... +||+|+|+|.+...+..
T Consensus 89 ~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (221)
T 1of5_A 89 IGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNST 168 (221)
T ss_dssp BHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------
T ss_pred cCHHHHHHHHHhCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccccccc
Confidence 57889999999999888888 5999999755 69999999999875532
Q ss_pred -----ccceeEEEEEEEeeCCeEEEEcceEEeccC
Q 001060 811 -----RRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 840 (1169)
Q Consensus 811 -----~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 840 (1169)
..|.|+|||+|.|.+++|+|.||+||+-..
T Consensus 169 ~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 169 SNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAY 203 (221)
T ss_dssp CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccCCccceEEEEEEEecCCeEEEEeeEEEeecC
Confidence 478999999999998899999999998754
|
| >1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-17 Score=174.14 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=101.4
Q ss_pred chhHhHHHHHHHHhhhhC-cccccccccCCceEEEEcCCcc------------------------------cchhhHHHH
Q 001060 721 AQVGSYFVGQYYQVLQQQ-PDLVHQFYSDASSMIRVDGDST------------------------------ESASSMLDI 769 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~~~~~~g~~~------------------------------~~~~~~~~I 769 (1169)
.+||..||++||++++++ |..|.++|+++|.| .|+++.. ....|.++|
T Consensus 15 ~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~f-S~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I 93 (250)
T 1jkg_B 15 KSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACC-SLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNV 93 (250)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEE-EEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHH
T ss_pred HHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEE-EEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHH
Confidence 479999999999999998 99999999998655 4564321 135678899
Q ss_pred HHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEecC---ccccceeEEEEEEEee-CCeEEEEcceEEeccCC
Q 001060 770 HSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTKE---FCRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDEE 841 (1169)
Q Consensus 770 ~~~~~~l~~~~~~i~--~~d~q~~~~~~ilv~v~G~~~~~~---~~~~~~F~q~F~L~~~-~~~y~v~nDifr~~~~~ 841 (1169)
.++|.+||.+.+.+. ++|||+..+++|+|+|+|.+...+ ..+.|.|+|||+|.|. +++|+|+||+||+.+..
T Consensus 94 ~~~l~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~s 171 (250)
T 1jkg_B 94 VAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS 171 (250)
T ss_dssp HHHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEECC
T ss_pred HHHHHhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECCC
Confidence 999999998888766 899999878899999999999865 2368999999999996 47899999999998643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-15 Score=165.59 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++++++..|++++.. ..+|.+...|..++..+...|++++|+.+|++ |.+.++|..++.++.+.|+++
T Consensus 79 ~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 79 SRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp TTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 3455566667766651 13566778888888888899999999999998 889999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLF--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
+|...|+++++.. |+.....+. |..+....|++++|+.+|+++ ++..|++..+|..++.++.++|++++|+.+|++
T Consensus 148 ~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 148 LARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999887 666544444 345555668999999999998 677999999999999999999999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhcCCCHHHHH
Q 001060 486 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE-KARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 486 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e-~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
++...|. .+.+|.+++.++.. .|+.. .+..+++++++..|+++.+..
T Consensus 226 al~~~p~------~~~~l~~l~~~~~~-~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 226 ALDKDSG------HPETLINLVVLSQH-LGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhCCC------CHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999864 37788899888777 77765 478999999999999987763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=158.68 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=191.5
Q ss_pred CChhc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 351 LSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 351 l~~~~-~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.+|.. ...|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|+++++.. |.+..+|+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 45665 78899999999999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a 507 (1169)
.++.++...|++++|+.+|+++ ++ ..|.+..+|..++.++...|++++|+.+|++++...+. .+.++..++
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la 182 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMA 182 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHH
Confidence 9999999999999999999998 66 78999999999999999999999999999999998753 267888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 508 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.++.. .|++++|..+|+++++..|.+...+..++.+....++ .+.+..++++++...++++
T Consensus 183 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 183 DLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTSH
T ss_pred HHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCCH
Confidence 98887 9999999999999999999999999888888888877 5668889999988877654
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=161.92 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=76.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| +.++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87644
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-17 Score=177.18 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++|||+|||+++|+++|+++|++|| .|++|.| ++++.+|++||||||+|.+.++|.+||+. +++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i-~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEE-EECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 357999999999999999999999999 9999875 56888999999999999999999999985 8999999999999
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
+++
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-15 Score=165.52 Aligned_cols=302 Identities=10% Similarity=-0.028 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------cCCC
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC----YGYWKKYADHEARVGSMDKVVEVYERAVQG------VTYS 168 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~----~~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~P~s 168 (1169)
...|...+..+... |++++|+.+|++++...|.+ ..+|..++.++...|++++|+++|++++.. .+..
T Consensus 5 ~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 45677777777663 58889999999999988888 467888888888889999999998888876 3344
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001060 169 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 248 (1169)
Q Consensus 169 ~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~ 248 (1169)
..+|...+.++. ..|++++|+..|++++...+... .......+|. .+..++...
T Consensus 83 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~--------~l~~~~~~~ 136 (338)
T 3ro2_A 83 AKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELN-----------------DKVGEARALY--------NLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT-----------------CHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhc-----------------CchHHHHHHH--------HHHHHHHHc
Confidence 666777777776 67888888888888877432210 0000000000 001111111
Q ss_pred HHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 001060 249 KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 328 (1169)
Q Consensus 249 ~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~ 328 (1169)
..+..... . ... . .... ...+
T Consensus 137 ~~~~~~~~---~-----------------~~~----------------~---------~~~~--------------~a~~ 157 (338)
T 3ro2_A 137 GKSFGCPG---P-----------------QDT----------------G---------EFPE--------------DVRN 157 (338)
T ss_dssp HHTSSSSS---C-----------------C-----------------------------CCH--------------HHHH
T ss_pred Ccccccch---h-----------------hhh----------------h---------hhhh--------------hHHH
Confidence 11000000 0 000 0 0000 0111
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH------HHHHHHHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEA 402 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~------e~W~~~a~~l~~ 402 (1169)
.+++++..|++++.. .......+.....|..++..+...|++++|+..|++++..++... .+|..++.++..
T Consensus 158 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 158 ALQAAVDLYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 234444444444430 000001234456788888888999999999999999998865433 389999999999
Q ss_pred cCChHHHHHHHHHHHHHhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHANME 470 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~~e 470 (1169)
.|++++|...|++++.+. +.. ..++..++.++...|++++|+..|+++ +++.+. ...++..++.++
T Consensus 236 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999999999887 333 678888999999999999999999997 444332 245789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
.+.|++++|..+|++++.+.+
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC--
T ss_pred HHcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999864
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-15 Score=160.16 Aligned_cols=207 Identities=8% Similarity=-0.020 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
....+..+|...+++++|+..|+++++ +++.....|..++..+...|++++|+.+|++++...|.+..+|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALE--------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 445556788889999999999999998 567778999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 396 YVLCMEASGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
++.++...|++++|+.+|++++. .. +....+|+.++.++...|++++|+.+|+++ +++.|.+..+|+.++.++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKS-LRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 55 677899999999999999999999999998 788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
|++++|..+|++++...+. .+..+..++.++.. .|++++|+.+++++++..|++..++.
T Consensus 189 g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKV-FEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999998753 25677778888776 99999999999999999999987664
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-16 Score=152.75 Aligned_cols=84 Identities=20% Similarity=0.393 Sum_probs=76.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|++|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI-VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEE-EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999875 56777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-14 Score=152.16 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=187.8
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
.+.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |++..+|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999999999987 8899999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001060 432 ARFKEQN-GDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 508 (1169)
Q Consensus 432 a~~~e~~-g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~ 508 (1169)
+.++... |++++|+.+|+++ ++ ..|....+|..++.++...|++++|+.+|++++...+. .+.++..++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHH
Confidence 9999999 9999999999998 66 57788999999999999999999999999999998753 2668888998
Q ss_pred HHHHHhCCHHHHHHHHHHHhhhcC-CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 509 FLHLVSRNAEKARQILVDSLDHVQ-LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 509 ~~~~~~g~~e~Ar~i~~kAl~~~p-~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++.. .|++++|+.+|+++++..| .+...+...+.+....+. .+.+..+++.++...|+++
T Consensus 156 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKML-AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCCH
Confidence 8877 9999999999999999999 999888877778777776 4557778888777766654
|
| >4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=147.03 Aligned_cols=80 Identities=20% Similarity=0.423 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKL-IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEe-eecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999875 66888999999999999999999999976 999999999999999
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=161.82 Aligned_cols=205 Identities=8% Similarity=-0.002 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|...+..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |+...+|+.++.++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999987 78999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
...|++++|+.+|+++ +++.|.+..+|..++.++.+.|++++|+.+|++++...+. .+.++..++.++.. .|
T Consensus 102 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~ 173 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKA-LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLAN-EG 173 (243)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HT
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHH-cC
Confidence 9999999999999998 7889999999999999999999999999999999998753 26688889988877 99
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 516 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++++|+.+|+++++..|++..+|..++.+....++ .+.+..+|++++...+++.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchH
Confidence 99999999999999999999999988888888877 4557889999999887664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-15 Score=164.39 Aligned_cols=272 Identities=7% Similarity=0.010 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLC-YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~-~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
.|++.+|+..++++....|.+ .+....++..++..|+++.|+..++.. .|.+...+..++.++. ..++.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~-~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLA-SHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHH-CSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHc-CCCcHHHHHHH
Confidence 357777777777777666665 356666777777788887777766552 3445555666666666 56777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 272 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~ 272 (1169)
|++++.. +.++....+|..........|+++.|..+|++ | .+..
T Consensus 88 l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~-~~~~------------------------------ 131 (291)
T 3mkr_A 88 LDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G-DSLE------------------------------ 131 (291)
T ss_dssp HHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C-CSHH------------------------------
T ss_pred HHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C-CCHH------------------------------
Confidence 7777762 22344566676766766777777777776655 1 1111
Q ss_pred HhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC
Q 001060 273 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352 (1169)
Q Consensus 273 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~ 352 (1169)
.+..+..+|...+++++|+..|+++++ ++
T Consensus 132 -------------------------------------------~~~~l~~~~~~~g~~~~A~~~l~~~~~--------~~ 160 (291)
T 3mkr_A 132 -------------------------------------------CMAMTVQILLKLDRLDLARKELKKMQD--------QD 160 (291)
T ss_dssp -------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HC
T ss_pred -------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHh--------hC
Confidence 111223355566667777777777766 33
Q ss_pred hhcHHHH--HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 353 VTELENW--HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 353 ~~~~~~W--~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
|...... ..++.+....|++++|+.+|++++..+|.++.+|..++.++...|++++|..+|++++.+. |+++.+|..
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~ 239 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLIN 239 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3333211 2233444456788888888888888888888888888888888888888888888888877 788888888
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001060 431 AARFKEQNGDIDG-ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482 (1169)
Q Consensus 431 ~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i 482 (1169)
++.++...|+.++ +..+++++ ++++|+++.+. ++..+.+.|+++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~-~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQL-KDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH-HHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-HHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 8888888888865 56777887 77888887653 233333444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=151.78 Aligned_cols=206 Identities=12% Similarity=0.039 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
+..+...|...+++++++..|+++++ ++|.....|..++..+...|++++|+.+|++++..+|.+..+|..+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALK--------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34456778889999999999999998 5777788999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 397 VLCMEAS-GSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 397 a~~l~~~-g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
+.++... |++++|+.+|+++++ .. +....+|+.++.++...|++++|+..|+++ ++..|.+..+|..++.++.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTY-PTPYIANLNKGICSAKQGQFGLAEAYLKRS-LAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTC-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHc
Confidence 9999999 999999999999998 33 455789999999999999999999999998 788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhh-CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 474 GNLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~-~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
|++++|..+|++++...| . .+..+...+.++.. .|+.++|..+++.+++..|++..+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVL------QADDLLLGWKIAKA-LGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999885 3 24566556666555 99999999999999999999987664
|
| >1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=163.94 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=97.5
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcc---------------c-----------------------
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST---------------E----------------------- 761 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~---------------~----------------------- 761 (1169)
..+|+..||++||++++++|..|..||+++|.|+ |.++.. .
T Consensus 13 ~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~ 91 (219)
T 1q40_B 13 SRNLATNFIANYLKLWDANRSELMILYQNESQFS-MQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMA 91 (219)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEE-EEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhccccEEE-EEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhh
Confidence 3569999999999999999999999999987665 443211 0
Q ss_pred -chhhHHHHHHHHhcCCCcceeE------eeeeccccC-CCceEEEEEEEEEecCc------------------------
Q 001060 762 -SASSMLDIHSLVISLNFTAIEI------KTINSLGSW-NGGVLVMVSGSVKTKEF------------------------ 809 (1169)
Q Consensus 762 -~~~~~~~I~~~~~~l~~~~~~i------~~~d~q~~~-~~~ilv~v~G~~~~~~~------------------------ 809 (1169)
...|.++|.++|.+||.+.+.| .++|||+.. .+||||+|+|.+...+.
T Consensus 92 ~l~~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (219)
T 1q40_B 92 KLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGP 171 (219)
T ss_dssp TCEEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSS
T ss_pred hhccCHHHHHHHHHHCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 3457889999999999888888 599999432 47899999999976432
Q ss_pred ------cccceeEEEEEEEee-CCeEEEEcceEEeccCC
Q 001060 810 ------CRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDEE 841 (1169)
Q Consensus 810 ------~~~~~F~q~F~L~~~-~~~y~v~nDifr~~~~~ 841 (1169)
...|.|+|||+|.|. +++|+|.||+||+-...
T Consensus 172 ~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~ 210 (219)
T 1q40_B 172 KHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYT 210 (219)
T ss_dssp CCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECC
T ss_pred ccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCC
Confidence 258999999999998 57999999999987643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-15 Score=177.86 Aligned_cols=207 Identities=12% Similarity=0.026 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF-NKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~-~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~ 406 (1169)
+++++++..+++.+. ..+.....|..++..+...|++ ++|+..|+++|..+|.+.++|+.++.++...|++
T Consensus 82 ~~~~~al~~l~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG--------SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHT--------TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhc--------cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 456667777877766 5667889999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc----
Q 001060 407 DLAHNALARATHVFVKRLPEIHLFAARFKEQN---------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---- 473 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~---------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---- 473 (1169)
++|+.+|++++++. |+ ..+|..++.++... |++++|+..|+++ ++++|++..+|..++.++...
T Consensus 154 ~~A~~~~~~al~~~-p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC-KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA-VQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC-CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC-CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999987 66 79999999999999 9999999999998 889999999999999999999
Q ss_pred ----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 474 ----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 474 ----g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
|++++|+.+|++++.+.|. ....+.+|..++.++.. .|++++|+..|+++++..|++...|..+..+...++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999752 01347899999999887 999999999999999999999988877776665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=148.18 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
...++.+|...+++++|+..|+++|+ ++|.+...|..++..+.+.|++++++..+++++...+.+..+|..+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLK--------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 34567889999999999999999999 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+.++...++++.|...+.+++.+. |++..+|..+|.++.+.|++++|+..|+++ ++++|.+..+|+.++.++.++|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT-ISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH-HHhcchhhhHHHHHHHHHHHCCCH
Confidence 999999999999999999999987 899999999999999999999999999998 889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 001060 477 EDAFSLYEQAIAIEK 491 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~ 491 (1169)
++|+..|++||+..|
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999986
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-15 Score=175.87 Aligned_cols=222 Identities=13% Similarity=0.045 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM-DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~-e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
.++++...++..+...|.+..+|..++..+...+++ ++|++.|+++|+..|.+.+.|..++..+. ..|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 567777788888888888888888888888888888 88888888888888888888888888777 6778888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHh
Q 001060 195 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 274 (1169)
Q Consensus 195 rAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~ 274 (1169)
++++..+. ...|..+.. .+
T Consensus 162 ~al~~~p~----~~~~~~lg~----------------------------------~~----------------------- 180 (474)
T 4abn_A 162 GALTHCKN----KVSLQNLSM----------------------------------VL----------------------- 180 (474)
T ss_dssp HHHTTCCC----HHHHHHHHH----------------------------------HH-----------------------
T ss_pred HHHhhCCC----HHHHHHHHH----------------------------------HH-----------------------
Confidence 88763221 111111111 00
Q ss_pred hCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh
Q 001060 275 AAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 354 (1169)
Q Consensus 275 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~ 354 (1169)
. . +..
T Consensus 181 --------------------------------------------------~-------------~-----------~~~- 185 (474)
T 4abn_A 181 --------------------------------------------------R-------------Q-----------LQT- 185 (474)
T ss_dssp --------------------------------------------------T-------------T-----------CCC-
T ss_pred --------------------------------------------------H-------------H-----------hcc-
Confidence 0 0 000
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHhhc---c
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--------GSMDLAHNALARATHVFVK---R 423 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~--------g~~e~A~~vl~rAl~~~~p---~ 423 (1169)
....++.|++++|+..|++++..+|.+..+|+.++.++... |++++|+..|++++++. | +
T Consensus 186 --------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 256 (474)
T 4abn_A 186 --------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASS 256 (474)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGG
T ss_pred --------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCccc
Confidence 00112346678899999999999999999999999999988 99999999999999987 7 8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++.+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++..+|++++|+..|.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQA-AALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998 78999999999999999999988887776544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=159.43 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEF----PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI 189 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~----P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~A 189 (1169)
++++++|+..|++++... |.+...|..++..+...|++++|+++|++++...|.+..+|..++.++. ..|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHH
Confidence 468899999999999874 4567889999999999999999999999999999999999988888887 78888888
Q ss_pred HHHHHHHHHhc
Q 001060 190 RRLFERGLAYV 200 (1169)
Q Consensus 190 r~~~erAl~~~ 200 (1169)
+..|++++...
T Consensus 97 ~~~~~~al~~~ 107 (275)
T 1xnf_A 97 YEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88888888743
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=139.61 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=77.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||++++..|+|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM-IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEE-CCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999875 56777899999999999999999999998999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87643
|
| >2lxi_A RNA-binding protein 10; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-16 Score=140.96 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=73.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~V~~~ 1110 (1169)
++|||+|||+++|+++|+++|++|| .|++|+| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i-~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRL-MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCS-SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 6899999999999999999999999 8999875 67888999999999999999999999986 467899999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-14 Score=166.03 Aligned_cols=285 Identities=12% Similarity=0.017 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------ccCC
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIA------CANY 389 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~------~~~~ 389 (1169)
+..+...|...+++++|+..|+++++. .|.++. ....|..++..+...|++++|+..|++++.. .+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 335567788899999999999999982 222322 1257888899999999999999999999988 4677
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----hccChHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVF-----VKRLPEIHLFAARFKEQNGD-----------------IDGARAA 447 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-----~p~~~~l~~~~a~~~e~~g~-----------------~~~A~~~ 447 (1169)
..+|..++.++...|++++|...|++++.+. .+....++..++.++...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 7899999999999999999999999999984 24566789999999999999 9999999
Q ss_pred HHHHhhhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH
Q 001060 448 YQLVHTET------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 521 (1169)
Q Consensus 448 ~~~a~~~~------~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar 521 (1169)
|+++ +++ .+....+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+
T Consensus 206 ~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 283 (411)
T 4a1s_A 206 YQEN-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LGQFEDAA 283 (411)
T ss_dssp HHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHH
Confidence 9987 333 233456899999999999999999999999999876432222233467788888776 99999999
Q ss_pred HHHHHHhhhcCCC------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 522 QILVDSLDHVQLS------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 522 ~i~~kAl~~~p~s------~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
..|+++++..+.. ..++..++.+....++ .+.+..+|++++...+... .......++..+.......|
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQELG---DRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhc
Confidence 9999999987644 4566677777777776 5667788888776533221 12344567888888888999
Q ss_pred CHHHHHHHHHHHHhhhCCC
Q 001060 596 DAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 596 d~~~i~~v~~R~~~~~~~~ 614 (1169)
+.+.+...+++..+++...
T Consensus 358 ~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 358 GHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998753
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=174.85 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=76.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+.+|+++|+++|++||.|+.|.| +.++.+|+++|||||+|.+.++|.+||.. +++.|+|+.|.|+++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM-VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEe-eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999875 55777899999999999999999999976 899999999999999
Q ss_pred cCCCCC
Q 001060 1111 RPNTGS 1116 (1169)
Q Consensus 1111 r~~~~~ 1116 (1169)
+++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-14 Score=167.31 Aligned_cols=381 Identities=12% Similarity=0.066 Sum_probs=231.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM---DKVVEVYERAVQGVTYSVDIWLHYCIFAI 180 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~---e~A~~l~eraL~~~P~s~~lw~~y~~~~~ 180 (1169)
.|+..+.+ .+++++|.++|++++.. .+...+..++.++...|.. ++|+..|++++.. +.+.++.++.++.
T Consensus 8 ~la~~~~~--~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALK--RGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 45555555 46899999999998876 4667788888888888877 8999999999876 6677777777444
Q ss_pred hhc----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001060 181 NTY----GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW---SRVAMIYTRILENPIQQLDRYFSSFKEFAA 253 (1169)
Q Consensus 181 ~~~----~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~---~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~ 253 (1169)
... +++++|...|+++++. |. .. .+..+..+....+.. ..+...|.++.... +....+.....+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g~-~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-GE-GN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-TC-SS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-CC-HH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHc
Confidence 122 2678899999999883 22 11 233333333333332 23444444444321 11122222222211
Q ss_pred cCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH---HH
Q 001060 254 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK---EF 330 (1169)
Q Consensus 254 ~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~---~~ 330 (1169)
......- .+++..+.... ..+. .. .+..+..+|...+ ++
T Consensus 154 ~~~~~~~--~~~a~~~~~~a-------------~~~~-----------------~~------a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 154 QGTYDQH--LDDVERICKAA-------------LNTT-----------------DI------CYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp HTCGGGG--HHHHHHHHHHH-------------TTTC-----------------TT------HHHHHHHHHHHTTCHHHH
T ss_pred CCCcccC--HHHHHHHHHHH-------------HcCC-----------------HH------HHHHHHHHHHHcCCcccH
Confidence 1111100 01111000000 0000 00 2233455666676 89
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhccCCHHHHHHHHHH-H--HHc
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANYPEYWIRYVLC-M--EAS 403 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~~~~~~~e~W~~~a~~-l--~~~ 403 (1169)
++++..|++++. .++.....|..++.++... +++++|+.+|+++. +.+++.|+.++.+ + ...
T Consensus 196 ~~A~~~~~~aa~--------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 196 AELLKQMEAGVS--------RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHHHHH--------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCC
Confidence 999999999998 5667777778888887655 79999999999998 8999999999997 4 457
Q ss_pred CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cC
Q 001060 404 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-----DIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LG 474 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g-----~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g 474 (1169)
+++++|+..|+++++ ..++..++.++.++. .| ++++|+..|+++ . +++..+++.++.++.. ..
T Consensus 265 ~d~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A-a---~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRA---ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA-V---GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT-T---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred CCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH-h---CCCHHHHHHHHHHHHCCCCCCc
Confidence 899999999999986 458999999999998 55 999999999998 3 8999999999988876 34
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~ 551 (1169)
++++|+..|+++.+... +.....++.++.. +..++++|...|++|.+.-... -...+..+...+ ++
T Consensus 337 d~~~A~~~~~~Aa~~g~--------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~-~~ 405 (452)
T 3e4b_A 337 YPQKALDHLLTAARNGQ--------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPL-TP 405 (452)
T ss_dssp CHHHHHHHHHHHHTTTC--------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTC-CH
T ss_pred CHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhC-CH
Confidence 89999999999998642 2355566666443 2348999999999999865433 333344444443 34
Q ss_pred hHHHHHHHHHHHHhh
Q 001060 552 KQIDFLEQLVDKFLM 566 (1169)
Q Consensus 552 ~~~~~~r~l~eral~ 566 (1169)
.++..++.+.++...
T Consensus 406 ~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 406 AQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-14 Score=150.45 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~-~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
.+.|...+..+...|++++|+..|++++...| .+..+|+.++.++...|++++|+..|+++++.. |++..+|+.+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 47899999999999999999999999999998 899999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc--hHHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLL-------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT--LPMLYAQ 505 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~-------~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~--~~~l~~~ 505 (1169)
+...|++++|+..|+++ +++.|++. .+|+.++.++...|++++|+..|+++++..| . .+..|..
T Consensus 86 ~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEG-IKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS------KKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC------HHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC------CcccHHHHHH
Confidence 99999999999999998 78899988 6699999999999999999999999999874 3 4667777
Q ss_pred HHHHHHHHhCCH---------------------------HHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 506 YSRFLHLVSRNA---------------------------EKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 506 ~a~~~~~~~g~~---------------------------e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
++.+++. .|+. ++|+..|+++++..|++..++..+..+
T Consensus 159 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYN-NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777655 5544 666666666666666666555544443
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=137.26 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=75.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999865 55666899999999999999999999965 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-13 Score=149.65 Aligned_cols=227 Identities=10% Similarity=-0.009 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCC-ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPL-SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 405 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl-~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~ 405 (1169)
.+++++++..|+++++. .+. ++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQILAS-----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHhc-----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 46788999999999983 112 357788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 406 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 406 ~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
+++|+..|++++++. |++..+|+.++.++...|++++|+.+|+++ +++.|++...+.... +....|++++|+.+|++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-YQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 999999999999987 889999999999999999999999999998 788999876555444 44667999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC----HHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001060 486 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLLEALIHFESIQSSPKQIDFLEQLV 561 (1169)
Q Consensus 486 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s----~~l~~~~a~~E~~~~~~~~~~~~r~l~ 561 (1169)
++...+.. ...+ ..+.+... .++.++|...++++++..|.. ..+|..++.+....++ .+.+..+|
T Consensus 170 ~~~~~~~~------~~~~-~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~ 238 (275)
T 1xnf_A 170 HFEKSDKE------QWGW-NIVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALF 238 (275)
T ss_dssp HHHHSCCC------STHH-HHHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHhcCCcc------hHHH-HHHHHHHH-hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 99987642 1133 24444444 778899999999999887643 5777788888888777 66789999
Q ss_pred HHHhhcCCCCC
Q 001060 562 DKFLMSNSDSP 572 (1169)
Q Consensus 562 eral~~~~~~~ 572 (1169)
++++...|++.
T Consensus 239 ~~al~~~p~~~ 249 (275)
T 1xnf_A 239 KLAVANNVHNF 249 (275)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHhCCchhH
Confidence 99999877553
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=139.75 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
.+.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+++++|||||+|.+.++|.+||+.....|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 3446799999999999999999999999999999875 567778999999999999999999999884339999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
++++..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=137.15 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeee-eEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD-GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++|||+|||.++++++|+++|++||.|..+ .| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45899999999999999999999999999998 65 56778899999999999999999999995 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987643
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-15 Score=140.95 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=74.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|++.++|.+||+. |+..|+|+.|+|+.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i-~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEI-LLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4589999999999999999999999999999876 56888899999999999999999999986 999999999999998
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
+.
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=180.76 Aligned_cols=174 Identities=15% Similarity=0.256 Sum_probs=160.5
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
..|.+.+.|..++..+.+.|++++|+..|+++|...|.+.++|..++.++.++|++++|+..|++|+++. |++..+|+.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
+|.++.+.|++++|++.|+++ ++++|++..+|..++.++.++|++++|+..|++|+++.|+ .+.+|.+++..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kA-l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------~~~a~~~L~~~l 155 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD------FPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHhhhhhHH
Confidence 999999999999999999998 8899999999999999999999999999999999999864 377899999888
Q ss_pred HHHhCCHHHHHHHHHHHhhhcCC
Q 001060 511 HLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 511 ~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
.. .|++++|.+.|++++++.|+
T Consensus 156 ~~-~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QI-VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HH-TTCCTTHHHHHHHHHHHHHH
T ss_pred Hh-cccHHHHHHHHHHHHHhChh
Confidence 77 99999999999999987653
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=135.99 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVL-MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-ECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4589999999999999999999999999999875 56777899999999999999999999985 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=142.09 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 35689999999999999999999999999999875 56777899999999999999999999998999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-12 Score=162.94 Aligned_cols=362 Identities=11% Similarity=0.069 Sum_probs=235.2
Q ss_pred CCCchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 154 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~----d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A 154 (1169)
+....+++.|++++ .+|. +.+.=..|+...-+. ++.+...+.+++= ++. ....|.++...|.+++|
T Consensus 999 glp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd-----~~d-~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 999 DLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLD-----NYD-APDIANIAISNELFEEA 1068 (1630)
T ss_pred CCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhh-----hcc-HHHHHHHHHhCCCHHHH
Confidence 44568899999999 4454 333333355544443 3333333333322 111 34578888889999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 155 ~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
..+|+++-. +...+..+.+..+++++|.++++|+ ....+|..|++..+..|++++|+..|.++
T Consensus 1069 f~IYkKa~~--------~~~A~~VLie~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1069 FAIFRKFDV--------NTSAVQVLIEHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 999999742 1122222233556777777777755 25678999999888899999999999876
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 235 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 235 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
++.+.+++....+.... ..+++............+ + ..+.
T Consensus 1132 ----dD~say~eVa~~~~~lG------kyEEAIeyL~mArk~~~e----------------------~----~Idt---- 1171 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSG------NWEELVKYLQMARKKARE----------------------S----YVET---- 1171 (1630)
T ss_pred ----CChHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhccc----------------------c----cccH----
Confidence 33344444333332221 223332211100000000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWI 394 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~ 394 (1169)
.....|.+.++++. + +..|+ ..+...|...++.+.+.|+++.|+.+|.+| ..|.
T Consensus 1172 ----~LafaYAKl~rlee-l---e~fI~----------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~ 1225 (1630)
T 1xi4_A 1172 ----ELIFALAKTNRLAE-L---EEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFG 1225 (1630)
T ss_pred ----HHHHHHHhhcCHHH-H---HHHHh----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHH
Confidence 02334555555542 3 33333 123467888999999999999999999996 5899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 474 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 474 (1169)
+++.+|.+.|++++|.+++++| ++...|...+......|++..|+.+... +..+|+. +...+.++.+.|
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~de---Leeli~yYe~~G 1294 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADE---LEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHH---HHHHHHHHHHcC
Confidence 9999999999999999999988 3568999999888889999999988765 2335544 447788889999
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHhhhcC-----CCHHHHHHHHHhHhhC
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ-----LSKPLLEALIHFESIQ 548 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~-~~g~~e~Ar~i~~kAl~~~p-----~s~~l~~~~a~~E~~~ 548 (1169)
.+++|+.+|+.+|.+++. +..+|..++.++.+ .-+++.++.++|...+.+.+ ....+|..++.+-...
T Consensus 1295 ~feEAI~LlE~aL~Lera------H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred CHHHHHHHHHHHhccChh------HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998742 23344333333222 25578888999998888777 6778998888887776
Q ss_pred CC
Q 001060 549 SS 550 (1169)
Q Consensus 549 ~~ 550 (1169)
++
T Consensus 1369 ~e 1370 (1630)
T 1xi4_A 1369 EE 1370 (1630)
T ss_pred cc
Confidence 65
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=136.42 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++|| |..|.| ++++.+|+++|||||+|.+.++|.+||.+++..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRL-VRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEE-eecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3569999999999999999999999997 999875 56777899999999999999999999966999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=144.64 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||+++|+++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35699999999999999999999999999999864 55667899999999999999999999975 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987643
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=138.35 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV-FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEE-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 55777899999999999999999999966 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-13 Score=158.80 Aligned_cols=381 Identities=9% Similarity=-0.002 Sum_probs=234.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 139 ~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~---e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
..++....+.|++++|+++|++++.. .+.+.++.++.++. ..|+. ++|+..|+++++. ++. .+..+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~-~~g~~~d~~~A~~~~~~A~~~---~~~---A~~~Lg~ 77 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQV-GTRDPAQIKQAEATYRAAADT---SPR---AQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-----------------------------------CHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhC---CHH---HHHHHHH
Confidence 45788889999999999999999876 57788888887776 56776 9999999999974 322 2333344
Q ss_pred HHHHh-----hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC-CccccCHHHHHHHHHHHhhCCCccchhhhcccc
Q 001060 216 YEYMQ-----QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP-LSELRTAEEVDAAAVAVAAAPSETGAEVKANEE 289 (1169)
Q Consensus 216 ~e~~~-----~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~ 289 (1169)
+.... +++++|...|++++..... ..++.....+..... .... ...+... . ...
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~-~a~~~~~--~--------a~~------- 137 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNV-NAQQQIS--Q--------WQA------- 137 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTC-CHHHHHH--H--------HHH-------
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCH-HHHHHHH--H--------HHH-------
Confidence 22222 4889999999999986221 122222222211110 0000 0000000 0 000
Q ss_pred ccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 290 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFD----SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 290 ~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~----~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
.+.. .....+..+|...+.++ .+...++.+.. .+ ...+..++..
T Consensus 138 ---------------~g~~------~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--------~~---~~a~~~Lg~~ 185 (452)
T 3e4b_A 138 ---------------AGYP------EAGLAQVLLYRTQGTYDQHLDDVERICKAALN--------TT---DICYVELATV 185 (452)
T ss_dssp ---------------HTCT------THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--------TC---TTHHHHHHHH
T ss_pred ---------------CCCH------HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--------CC---HHHHHHHHHH
Confidence 0000 02223345566555333 33334444433 23 2378889988
Q ss_pred HHHcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHhhccChHHHHHHHHH-H--
Q 001060 366 IERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEAS----GSMDLAHNALARATHVFVKRLPEIHLFAARF-K-- 435 (1169)
Q Consensus 366 ~~~~g---d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~----g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~-~-- 435 (1169)
+...| ++++++.+|++++...+.....|+.++.++... +++++|+..|+++. +.++..++.++.+ +
T Consensus 186 ~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 186 YQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHS
T ss_pred HHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhC
Confidence 88899 899999999999999999999999999988654 68999999999987 6789999999998 4
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-----NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-----~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
...+++++|+..|+++ . ..++...++.++.++. .| ++++|+..|++|+ ++ .+..+..++.++
T Consensus 262 ~~~~d~~~A~~~~~~A-a--~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g------~~~A~~~Lg~~y 328 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNG-R--AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR------EVAADYYLGQIY 328 (452)
T ss_dssp GGGCCHHHHHHHHHHH-H--HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-H--HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC------CHHHHHHHHHHH
Confidence 4689999999999998 3 4568889999999887 56 9999999999999 22 156777787664
Q ss_pred HHH---hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 001060 511 HLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF 587 (1169)
Q Consensus 511 ~~~---~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~ 587 (1169)
..- ..++++|+..|++|.+.......+....+. +...+.+.+.+.+...|+++...+.. -....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~G~g~~~d~~~A~~~~~~A~~~g~~------------~a~~~ 395 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF-SQGKGTKPDPLNAYVFSQLAKAQDTP------------EANDL 395 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HSCTTBCCCHHHHHHHHHHHHTTCCH------------HHHHH
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHCCCH------------HHHHH
Confidence 431 228999999999999865544444444433 33344444567788899999876421 12233
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhh
Q 001060 588 LEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 588 l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
+......-+.+.+.+..+...+.
T Consensus 396 l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 396 ATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 33334444555555555555443
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=136.48 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=77.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346799999999999999999999999999999875 56777899999999999999999999985 8999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9988654
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=138.89 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL-IKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE-ECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5689999999999999999999999999999875 4444 899999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-12 Score=159.54 Aligned_cols=400 Identities=9% Similarity=-0.047 Sum_probs=260.9
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL----CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~----~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
.|.+-=...++.+.. .|...+|+.+||+++ ..|. +..+-..++..-++. +..+..+...+.=.. + .
T Consensus 983 ~~PeeVs~~vKaf~~--aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d----~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMT--ADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D----A 1052 (1630)
T ss_pred cCHHHhHHHHHHHHh--CCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c----H
Confidence 344444577777766 469999999999999 4454 444444566555555 445555555444321 1 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 252 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~ 252 (1169)
...+..+. ..+.+++|..+|+++-. .......| ....+++++|.+++.|+ +....|+...+.+.
T Consensus 1053 ~eIA~Iai-~lglyEEAf~IYkKa~~-------~~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1053 PDIANIAI-SNELFEEAFAIFRKFDV-------NTSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHcCC-------HHHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHH
Confidence 23445555 68999999999999732 11112222 33678899999999987 22233444444332
Q ss_pred hcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 253 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 332 (1169)
Q Consensus 253 ~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ 332 (1169)
... ..++|+.+ |..- .+.+. |+ .....+.+.+++++
T Consensus 1117 ~~G------~~kEAIds----YiKA------------------------------dD~sa---y~-eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1117 QKG------MVKEAIDS----YIKA------------------------------DDPSS---YM-EVVQAANTSGNWEE 1152 (1630)
T ss_pred hCC------CHHHHHHH----HHhc------------------------------CChHH---HH-HHHHHHHHcCCHHH
Confidence 221 22344321 1110 01111 22 24567888999999
Q ss_pred HHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHH
Q 001060 333 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 412 (1169)
Q Consensus 333 ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~v 412 (1169)
+++.|..+++. ......+.+ ++..+.+.++++. +..| + . ..+..-|..+|.+++..|++++|..+
T Consensus 1153 AIeyL~mArk~-------~~e~~Idt~--LafaYAKl~rlee-le~f---I-~-~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1153 LVKYLQMARKK-------ARESYVETE--LIFALAKTNRLAE-LEEF---I-N-GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HHHHHHHHHhh-------cccccccHH--HHHHHHhhcCHHH-HHHH---H-h-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999998872 111123333 4445556677664 2233 3 2 33456778899999999999999999
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 413 LARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 413 l~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|.+| ..|..++..+.+.|++++|.++++++ .+..+|...+......|++..|+.+... +...
T Consensus 1218 Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~-- 1279 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH-- 1279 (1630)
T ss_pred HHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC--
Confidence 9886 36888999999999999999999997 3468999999998889999999988764 4333
Q ss_pred CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 493 KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 493 ~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++.+..++.++.. .|.+++|+.+|+.+|.+++.+..+|..++.+..... ++.+-...++|...+...
T Consensus 1280 -------~deLeeli~yYe~-~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini~---- 1346 (1630)
T 1xi4_A 1280 -------ADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP---- 1346 (1630)
T ss_pred -------HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhcccc----
Confidence 3445566667655 999999999999999999999999988888887765 333322233444333321
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH-HhhhC
Q 001060 573 STANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH-ARLFL 612 (1169)
Q Consensus 573 ~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~-~~~~~ 612 (1169)
-.++.-....+|..+.....++|+.+.+..+--.| ...|.
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 12344456679999999999999977665433333 34443
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=136.57 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999999999999999999999999999875 55667899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=144.52 Aligned_cols=234 Identities=6% Similarity=-0.043 Sum_probs=151.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHH
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~ 170 (1169)
+|.+.++|..|+..+... +++++|..+|++++. |.+...|..++.++.. .+++++|++.|++++... +..
T Consensus 2 ~~~~~~a~~~lg~~~~~~--~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE--KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence 577888888888888774 588888888888888 7778888888888888 888888888888888863 788
Q ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHH
Q 001060 171 IWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLD 242 (1169)
Q Consensus 171 lw~~y~~~~~~~----~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~----~~~~~~a~~iY~r~L~~p~~~~~ 242 (1169)
.|..++.++. . .+++++|+..|+++++. + ....|..+..+... .+++++|...|
T Consensus 76 a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~------------ 137 (273)
T 1ouv_A 76 GCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL-K----YAEGCASLGGIYHDGKVVTRDFKKAVEYF------------ 137 (273)
T ss_dssp HHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc-C----CccHHHHHHHHHHcCCCcccCHHHHHHHH------------
Confidence 8888888777 5 77888888888888873 1 23334444433333 33344443333
Q ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH
Q 001060 243 RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE 322 (1169)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~ 322 (1169)
T Consensus 138 -------------------------------------------------------------------------------- 137 (273)
T 1ouv_A 138 -------------------------------------------------------------------------------- 137 (273)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~----~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
+++++ ++ ....|..++.++.. .+++++|+.+|++++.. .++..|+.++.
T Consensus 138 ---------------~~a~~--------~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 190 (273)
T 1ouv_A 138 ---------------TKACD--------LN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGN 190 (273)
T ss_dssp ---------------HHHHH--------TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ---------------HHHHh--------cC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 33333 11 12334444444444 56666666666666654 34566666666
Q ss_pred HHHH----cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 399 CMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 399 ~l~~----~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
++.. .+++++|+..|+++++.. .+..++.++.++.. .+++++|+..|+++ .++.|.....+
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a-~~~~~~~a~~~ 259 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG-CKLGAKGACDI 259 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH-HHHTCHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HHcCCHHHHHH
Confidence 6666 666666766666666543 35566666666666 66666666666666 45555444333
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-15 Score=138.33 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||+++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..+++.|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVI-MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 346799999999999999999999999999999875 5677789999999999999999999998899999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887643
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=136.32 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5689999999999999999999999999999864 56777899999999999999999999976 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=135.47 Aligned_cols=85 Identities=28% Similarity=0.363 Sum_probs=77.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999875 56767899999999999999999999986 8999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987654
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.1e-15 Score=136.90 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 5689999999999999999999999999999865 55777899999999999999999999985 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
++..+
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87543
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=135.38 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC-cccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD-VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~-g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++++++|+++|++|| |..|.| ++++.+ |+++|||||+|.+.++|.+||.+++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC-CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE-ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999875 456665 8999999999999999999995589999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98764
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=132.09 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||+++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI-KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999875 5677789999999999999999999999889999999999986
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-15 Score=135.50 Aligned_cols=80 Identities=10% Similarity=0.313 Sum_probs=70.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC--eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~----~i~g~~ 1104 (1169)
.-.+|||+|||+++|+++|+++|++||. |.+|++ ++++.+|++||||||+|.+.++|.+||+. ++. .|+||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i-~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRL-IKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEEC-CCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEE-EecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4478999999999999999999999996 556653 56888999999999999999999999987 553 699999
Q ss_pred EEEEeccC
Q 001060 1105 VYIEERRP 1112 (1169)
Q Consensus 1105 l~V~~~r~ 1112 (1169)
|+|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-12 Score=142.36 Aligned_cols=228 Identities=10% Similarity=0.031 Sum_probs=184.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCC
Q 001060 131 FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLS 206 (1169)
Q Consensus 131 ~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~----~~~~e~Ar~~~erAl~~~g~d~~s 206 (1169)
.|.+...|..++.++...+++++|++.|++++. +.+...|+.++.++. . .+++++|+..|+++++. + .
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~-~----~ 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDL-N----Y 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT-T----C
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHC-C----C
Confidence 477889999999999999999999999999998 678899999988888 6 88999999999999873 1 2
Q ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccch
Q 001060 207 FPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA 282 (1169)
Q Consensus 207 ~~lw~~y~~~e~~----~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~ 282 (1169)
...|..+..+... .+++
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~----------------------------------------------------------- 94 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNT----------------------------------------------------------- 94 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCH-----------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCcccCH-----------------------------------------------------------
Confidence 3334333333333 3333
Q ss_pred hhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH
Q 001060 283 EVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY 362 (1169)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y 362 (1169)
++++..|++++. . .....|..+
T Consensus 95 ------------------------------------------------~~A~~~~~~a~~--------~--~~~~a~~~l 116 (273)
T 1ouv_A 95 ------------------------------------------------NKALQYYSKACD--------L--KYAEGCASL 116 (273)
T ss_dssp ------------------------------------------------HHHHHHHHHHHH--------T--TCHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHH--------c--CCccHHHHH
Confidence 344444555554 1 134567777
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 363 LDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 363 l~~~~~----~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~----~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
+.++.. .+++++|+.+|++++... +...|+.++.++.. .+++++|+..|+++++. .++..++.++.+
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~ 191 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 777777 899999999999999865 78999999999998 89999999999999975 468899999999
Q ss_pred HHH----cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhh
Q 001060 435 KEQ----NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 435 ~e~----~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~~ 491 (1169)
+.. .+++++|+..|+++ .+..+ ..+++.++.++.. .+++++|+..|+++++..+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a-~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKA-CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCCccHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999 99999999999998 56555 7889999999998 9999999999999999875
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=134.03 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.|. .+++++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK----NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC----CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356899999999999999999999999999997652 2345889999999999999999965 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98753
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=136.27 Aligned_cols=84 Identities=27% Similarity=0.343 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C------CCeeece
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S------PIQLAGR 1103 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~------~~~i~g~ 1103 (1169)
.+.++|||+|||+++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. + +..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 35689999999999999999999999999999875 56777899999999999999999999986 7 9999999
Q ss_pred EEEEEeccCCCC
Q 001060 1104 QVYIEERRPNTG 1115 (1169)
Q Consensus 1104 ~l~V~~~r~~~~ 1115 (1169)
.|+|++++++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=135.42 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=75.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999999875 56777889999999999999999999965 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=141.50 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITI-LCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEE-EEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999999875 557778999999999999999999999668999999999999998
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
+..+
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7544
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-15 Score=136.87 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++||.| .|.| ++++ +|+++|||||+|.+.++|.+||+.++..|+||.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI-EIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE-EESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45899999999999999999999999955 7765 4455 8999999999999999999999889999999999999877
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=136.33 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=76.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCee--------eeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--------PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
+.+.++|||+|||.++|+++|+++|++||.|. .|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI-YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEEC-CBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEE-EEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 34679999999999999999999999999998 5664 55777899999999999999999999986 99999
Q ss_pred eceEEEEEeccCCCC
Q 001060 1101 AGRQVYIEERRPNTG 1115 (1169)
Q Consensus 1101 ~g~~l~V~~~r~~~~ 1115 (1169)
+|+.|+|++++++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987643
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=130.30 Aligned_cols=81 Identities=30% Similarity=0.374 Sum_probs=73.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4589999999999999999999999999999875 56777899999999999999999999986 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=136.03 Aligned_cols=80 Identities=21% Similarity=0.473 Sum_probs=73.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKV-FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEE-CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35699999999999999999999999999999875 56777899999999999999999999986 89999999999998
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=128.25 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=74.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 68999999999999999999999999999875 56777899999999999999999999986 99999999999999987
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.1e-15 Score=132.89 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=75.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+..++..|+|+.|+|+.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTI-LCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEE-EESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999875 567778999999999999999999999559999999999999998
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
++.+
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7543
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-14 Score=132.84 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=75.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||. +++.|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEE-EecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 35689999999999999999999999999999875 5677789999999999999999999999 578999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87643
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=129.87 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEE-EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5689999999999999999999999999999875 56777899999999999999999999965 999999999999987
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-15 Score=136.70 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=72.8
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||+++|+++|+++|++||.|.+|.| ++++. |+++|||||+|.+.++|.+||..+++.|+|+.|.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i-~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEE-ECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEE-EECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999875 44554 8999999999999999999999889999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
++.
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=136.38 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.++++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE-EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35689999999999999999999999999999875 56777899999999999999999999999889999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=134.70 Aligned_cols=84 Identities=14% Similarity=0.304 Sum_probs=75.5
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eceEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i---~g~~l 1105 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..+ +|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC-CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345699999999999999999999999999999875 56777899999999999999999999985 88887 89999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|.+++++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998754
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-15 Score=141.09 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=75.6
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.+++..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE-EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999875 5677789999999999999999999996699999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8764
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=133.50 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=68.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec-----eEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-----RQV 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g-----~~l 1105 (1169)
..++|||+|||+++|+++|+++|++||.|..|.|. .+ |||||+|.+.++|.+||+. ++..|+| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~-~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY-RD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE-TT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe-cC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45899999999999999999999999999997652 22 8999999999999999986 8999999 999
Q ss_pred EEEeccCCCCC
Q 001060 1106 YIEERRPNTGS 1116 (1169)
Q Consensus 1106 ~V~~~r~~~~~ 1116 (1169)
+|++++++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=133.87 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeec-CCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN-RKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1106 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~-~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~ 1106 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| +++ +.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL-PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEE-ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345689999999999999999999999999999875 445 66899999999999999999999976 79999999999
Q ss_pred EEeccCCCC
Q 001060 1107 IEERRPNTG 1115 (1169)
Q Consensus 1107 V~~~r~~~~ 1115 (1169)
|++++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987643
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=132.15 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=74.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 489999999999999999999999999999875 56777899999999999999999999975 9999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=133.01 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||+++|+++|+++|++||.|..|.|. .+ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-ME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEE-EC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467999999999999999999999999999998753 34 788999999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9988654
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=134.46 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQL-MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEE-EEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35699999999999999999999999999999875 56777899999999999999999999975 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=131.19 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=74.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 4455 889999999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988643
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=130.76 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCC---CcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK---DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~---~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
+.++|||+|||.++++++|+++|++||.|..|.|.. ++. +++++|||||+|.+.++|.+||.. ++..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~-~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK-KKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-EECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe-cCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 458999999999999999999999999999987643 333 568999999999999999999996 899999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987543
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=129.66 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=72.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5689999999999999999999999999999875 56777889999999999999999999975 899999999999987
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=153.29 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-------
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV------- 421 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~--------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~------- 421 (1169)
..|..++.++...|++++|+.+|++++.. .+....+|..++.++...|++++|..+|++++++.+
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555566666677777777777777776 455566778888888888888888888888876542
Q ss_pred -ccChHHHHHHH------HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 422 -KRLPEIHLFAA------RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 422 -p~~~~l~~~~a------~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
+....+|.... ......+.+.+|...+.++ ....|....+|..++.++.+.|++++|+.+|++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC-KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 12223333333 3334455666677777776 566888899999999999999999999999999998864
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=131.48 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=73.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec---eEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG---RQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g---~~l~V 1107 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++ +|+++|||||+|.+.++|.+||+. ++..+.| +.|+|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 5689999999999999999999999999999875 3444 789999999999999999999986 8999988 99999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-14 Score=134.15 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||.++|+++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35699999999999999999999999999999864 56777899999999999999999999985 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++.+
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=133.59 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEE-EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35699999999999999999999999999999875 56777899999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 88754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=152.14 Aligned_cols=315 Identities=10% Similarity=0.060 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH----HHhCCHHHHH-----------HHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHE----ARVGSMDKVV-----------EVYER 160 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~---~~~~W~~~a~~e----~~~~~~e~A~-----------~l~er 160 (1169)
++.|...+. .+++++|..+++.+....+. +..+...|..+. +..+.++.+. +++++
T Consensus 16 l~~w~~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 16 INEWYMYIR------RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHH------HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 356666665 46899999999998776644 556554443333 3335555555 66666
Q ss_pred HHhccCCCHHHHHH------HHHHHHhhcCCHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 161 AVQGVTYSVDIWLH------YCIFAINTYGDPETIRRLFERGLAYV---GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 161 aL~~~P~s~~lw~~------y~~~~~~~~~~~e~Ar~~~erAl~~~---g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
.-. .+.+.+.++. .+.++. ..|++++|+..|++|++.. +.+.....+|...+......|+++.|...|+
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543 3444443333 445555 7899999999999999863 3232345677788888888999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001060 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311 (1169)
Q Consensus 232 r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 311 (1169)
+++.+-...-. ...
T Consensus 168 ~al~~~~~~~~------------------------------------------------------------------~~~ 181 (383)
T 3ulq_A 168 QAYEIYKEHEA------------------------------------------------------------------YNI 181 (383)
T ss_dssp HHHHHHHTCST------------------------------------------------------------------THH
T ss_pred HHHHHHHhCcc------------------------------------------------------------------chH
Confidence 99765211000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hc
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----AC 386 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~-----~~ 386 (1169)
........++.+|...+++++|+..|++++.. +.-....+.....|..++..+...|++++|+..|++++. ..
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 00113344466788889999999999999861 000011223345788899999999999999999999999 45
Q ss_pred -cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCC
Q 001060 387 -ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPG 458 (1169)
Q Consensus 387 -~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~ 458 (1169)
+....++..++.++...|++++|...|++++.+... .....+..++.++...|+ +++|+.++++. ...+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHH
Confidence 777889999999999999999999999999987632 122234557788888888 88899998885 44566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 459 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 459 ~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
...++..++.++...|++++|...|++++....
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999764
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=144.21 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=73.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++|||+|||+++|+++|+++|++|| .|.+|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i-~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKF-AENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 458999999999999999999999999 9999875 56888999999999999999999999988 8999999999999
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8865
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-15 Score=133.69 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=68.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCC--CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+|||+|||+++|+++|+++|++|| .|.++.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i-~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEE-EECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEE-EecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 9999875 56778999999999999999999999975 899999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
|
| >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=133.30 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=73.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhc-CCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe-eeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQN-FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ-LAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~-i~g~~l~V~ 1108 (1169)
+.++|||+|||.++|+++|+++|++ ||.|..|.| ++++ +|+++|||||+|.+.++|.+||+. ++.. |+|+.|+|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV-VLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEE-EECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4689999999999999999999999 999999875 4555 899999999999999999999986 8888 999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 987754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-13 Score=136.34 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=157.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
....|..++..+...|++++++..|++++...|.+..+|..++.++...|++++|..+|+++++.. |.+..+|+.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 356788888888899999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
+...|++++|+.+|+++ .+..|.+..+|..++.++...|++++|+.+|++++...+. .+.++..++.++.. .
T Consensus 86 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKV-AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------EGKVHRAIAFSYEQ-M 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-T
T ss_pred HHHhcCHHHHHHHHHHH-HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHH-c
Confidence 99999999999999998 7789999999999999999999999999999999998753 26788889988877 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCH
Q 001060 515 RNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
|++++|..+|+++++..|++.
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-13 Score=169.55 Aligned_cols=249 Identities=13% Similarity=0.031 Sum_probs=194.2
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCL--------IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL--------~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
.++|.+...+...+ ...|++++|+..|++++ ...|.+.++|+.++..+...|++++|+..|++++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~- 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV- 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-
Confidence 35666666665544 56899999999999999 8899999999999999999999999999999999988
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
|++..+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.++.++|++++ +..|++|+++.|. .+.
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~~ 535 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEV-LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VIS 535 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hHH
Confidence 899999999999999999999999999998 88999999999999999999999999 9999999999864 367
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhH--HHHHHHHHHHHhhcCCCCCCCCCHHH
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAE 579 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~--~~~~r~l~eral~~~~~~~~~l~~~~ 579 (1169)
+|..++..+.. .|++++|+..|+++++..|++...|...+......+.... .+.++...++......+.+. ...-
T Consensus 536 a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~--~~~l 612 (681)
T 2pzi_A 536 AAFGLARARSA-EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR--VLQI 612 (681)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT--HHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH--HHHH
Confidence 89999999887 9999999999999999999999888777766554332110 12334444443333222221 2334
Q ss_pred HHHHHHHHHHHHHhh--------C---CH----HHHHHHHHHHHhhhCC
Q 001060 580 REELSCVFLEFLGLF--------G---DA----QLIKKAEDRHARLFLP 613 (1169)
Q Consensus 580 ~~~i~~~~l~fe~~~--------G---d~----~~i~~v~~R~~~~~~~ 613 (1169)
+..++..-+...... | +. ..++++++++..+-+.
T Consensus 613 ~~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~ 661 (681)
T 2pzi_A 613 RALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPT 661 (681)
T ss_dssp HHHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 555666666665432 2 22 3477788777665553
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-15 Score=136.11 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=74.6
Q ss_pred CceEEEEecCCC------CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec-e
Q 001060 1032 EVKSVYVRNLPS------TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-R 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~------~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g-~ 1103 (1169)
.+++|||+|||+ ++++++|+++|++||.|.+|.| ++++.||+++|||||+|.+.++|.+||+. +|..|+| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 468999999999 9999999999999999999875 56788899999999999999999999975 9999999 9
Q ss_pred EEEEEeccCC
Q 001060 1104 QVYIEERRPN 1113 (1169)
Q Consensus 1104 ~l~V~~~r~~ 1113 (1169)
.|+|..++++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999988754
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=136.05 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCe-eeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i-~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++|+++|+++|++||.| ..|.| +.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV-LVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE-CCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE-EECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 356899999999999999999999999999 78765 4555 89999999999999999999999999999999999998
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=130.11 Aligned_cols=75 Identities=31% Similarity=0.529 Sum_probs=67.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 45899999999999999999999999999997642 46999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=128.98 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=74.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999875 56777889999999999999999999986 99999999999999
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-14 Score=129.97 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCE-EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEE-EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4589999999999999999999999999998765 55778899999999999999999999966 899999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=134.53 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=70.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||+++|+++|+++|++||.|.+|+|. +++ +.+||||||+|.+.++|.+||+. ++..|+|+.|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~-~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEe-ecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3689999999999999999999999999998863 443 45789999999999999999976 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-13 Score=146.13 Aligned_cols=190 Identities=14% Similarity=0.058 Sum_probs=164.1
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--cCh
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLP 425 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p--~~~ 425 (1169)
+++...+.+...+..+.+.|++++|+..|++++...|.+ .++|+.++.++...|++++|+..|++++++++. ..+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456678889999999899999999999999999999998 999999999999999999999999999998731 346
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHHHH
Q 001060 426 EIHLFAARFKEQ--------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLEDAF 480 (1169)
Q Consensus 426 ~l~~~~a~~~e~--------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~A~ 480 (1169)
.+++.++.++.. .|++++|+..|+++ ++..|++..++ +.++.++.+.|++++|+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF-IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH-HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 789999999999 99999999999998 78899876655 78899999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
..|++++...|.. ...+..+..++..+.. . |++++|+..|+++++.+|++......+..+.
T Consensus 169 ~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 169 VTYEAVFDAYPDT---PWADDALVGAMRAYIA-YAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHCTTS---TTHHHHHHHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC---chHHHHHHHHHHHHHH-hcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999998753 3346678888877765 4 8899999999999999999976665544433
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=131.06 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCee-eeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE----E
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ----V 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~-~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~----l 1105 (1169)
+.++|||+|||.++++++|+++|++||.|. .+.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKI-IRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEE-EECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-eecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 468999999999999999999999999999 9875 56777899999999999999999999996 899999999 9
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|+++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988753
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=129.07 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=72.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEE-EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 346799999999999999999999999999999875 33432 3689999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=170.58 Aligned_cols=166 Identities=11% Similarity=0.180 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
.+..++.+|...+++++|+..|+++|+ ++|.....|..++..+.+.|++++|+..|+++|..+|.+.++|+.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~--------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445568899999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
++.++...|++++|+..|++|+++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++..+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A-l~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTA-LKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999988 899999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 001060 476 LEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~ 491 (1169)
+++|+..|++++++.+
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999999874
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=130.40 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=72.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeee--------eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
+.++|||+|||.++++++|+++|++||.|.. +.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEE-EECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEE-EecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3589999999999999999999999999998 775 56778899999999999999999999985 9999999
Q ss_pred eEEEEEecc
Q 001060 1103 RQVYIEERR 1111 (1169)
Q Consensus 1103 ~~l~V~~~r 1111 (1169)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999864
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=127.99 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=72.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||.++|+++|+++|++||.|..|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345699999999999999999999999999999875 33332 3889999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988654
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-14 Score=130.75 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=68.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+||+. + +..|+|+.|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 5689999999999999999999999999999875 32 269999999999999999984 3 589999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9987643
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=134.65 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=72.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecC-CCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~-~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||.++++++|+++|++|| |.+|.| ++++ .+|+++|||||+|.+.++|.+||..++..|+|+.|+|+.+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC-SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 458999999999999999999999999 999875 4455 5899999999999999999999966999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8753
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=125.58 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|++|++.++..|+|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999875 55667899999999999999999999998999999999999864
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=126.42 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++++++|+++|++| .|..|.| +++ .+|+++|||||+|.+.++|.+||..++..|+|+.|+|..++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i-~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRI-VRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEE-EEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEE-EEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 56899999999999999999999999 8999875 445 68899999999999999999999988999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
|
| >2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=139.83 Aligned_cols=82 Identities=15% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeee--eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeece
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGR 1103 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~--~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~----~i~g~ 1103 (1169)
.+.++|||+|||+++|+++|+++|++||.|.. |+| ++++.+|++||||||+|.+. +|.+||.. ++. .|+||
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i-~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRV-IKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEEC-CBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEE-EEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 35689999999999999999999999999976 664 56777999999999999999 99999977 888 99999
Q ss_pred EEEEEeccCCC
Q 001060 1104 QVYIEERRPNT 1114 (1169)
Q Consensus 1104 ~l~V~~~r~~~ 1114 (1169)
.|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=129.94 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=72.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeee-eeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|.. |.| +.+ .+|+++|||||+|.+.++|.+||..++..|+||.|+|..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i-~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL-PVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC-CBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEE-EEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 5689999999999999999999999999987 553 344 7899999999999999999999998999999999999887
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
.++
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-14 Score=127.23 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.|. + .+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~-~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK-M--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE-E--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-c--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56899999999999999999999999999998753 3 4788999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=125.08 Aligned_cols=75 Identities=24% Similarity=0.488 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 56999999999999999999999999999997652 58999999999999999975 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-12 Score=145.01 Aligned_cols=239 Identities=8% Similarity=0.003 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-------HHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------PEY 392 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-------~e~ 392 (1169)
++..|...+++++|+..|+++++. +.-.+..+.....|..++.++...|++++|+..|++++..++.. ..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK--LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 456778889999999999999872 11112234467889999999999999999999999999986544 348
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cC-CChHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TS-PGLLE 461 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~-P~~~~ 461 (1169)
+..++.++...|++++|...|++|+.+.... ...++..+|.++...|++++|+..|+++ ++ .+ |....
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence 8899999999999999999999999987322 1258888999999999999999999998 44 35 88889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhhcCCCHHHH
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
++..++.++.++|++++|..+|++++.+.+...+ +.....+..++.+... .|+ +++|..++++. ...+....++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 9999999999999999999999999998653211 1111223445555443 777 88888888877 3334444566
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 539 EALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 539 ~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..++.+....++ .+.+...|++++..
T Consensus 343 ~~la~~y~~~g~---~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 343 IDVAKYYHERKN---FQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 677777777776 55677788887664
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=126.28 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=72.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcc-cccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~-~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ +.++.++. ++|||||+|.+.++|.+|++. ++..|+|+.|+|+.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM-PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 489999999999999999999999999999875 44554444 899999999999999999986 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=140.52 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
+..++..|...+++++|+..|+++|+ +++ .+...|..++..+...|++++|+..|++++...|.+..+|+.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLK--------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 34456788899999999999999998 555 667889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHH
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLP-------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKH 466 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~-------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~ 466 (1169)
++.++...|++++|+..|++++++. |+++ .+|+.++.++...|++++|+..|+++ ++++|+ +..+|+.+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA-TDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-HhcCCCcccHHHHHHH
Confidence 9999999999999999999999988 7888 66999999999999999999999998 889999 89999999
Q ss_pred HHHHHHcCCH---------------------------HHHHHHHHHHHHhhhC
Q 001060 467 ANMERRLGNL---------------------------EDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 467 a~~e~r~g~~---------------------------e~A~~iy~~Al~~~~~ 492 (1169)
+.++...|+. ++|+..|++++++.|+
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999888887 8899999999999864
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=129.06 Aligned_cols=79 Identities=22% Similarity=0.395 Sum_probs=70.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|+.|+.|. + +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRAR---I-VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEE---E-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEE---E-EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 568999999999999999999999886543 3 55777889999999999999999999985 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
|
| >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=126.72 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.6
Q ss_pred CceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++++|||+|||+++++++|+ ++|++||.|.+|.| +.++.+ +|||||+|.+.++|.+||+. ++..|+|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i-~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL-SPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEE-EeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46899999999999999999 99999999999875 444433 78999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|++++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998754
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=127.64 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| ++++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345699999999999999999999999999999875 3444 488999999999999999999985 9999999999999
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-12 Score=131.97 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
++..+...|...+++++++..|+++++ .++.....|..++..+...|++++|+..|++++..+|.+..+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD--------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 444556778889999999999999987 567778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
++.++...|++++|..+|++++... |.+..+|+.++.++...|++++|+.+|+++ ++..|.+..+|..++.++...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA-LGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 789999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCC
Q 001060 476 LEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~ 493 (1169)
+++|..+|++++...|+.
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 999999999999998753
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=142.60 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=70.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++|| |..|.| ++++ +|+++|||||+|++.++|.+||..++..|+||.|+|..+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i-~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI-EIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC-CCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 468999999999999999999999999 667664 4454 4999999999999999999999778999999999999877
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
++
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=127.22 Aligned_cols=79 Identities=28% Similarity=0.461 Sum_probs=70.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|+ + +++ .+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK---V-PQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---C-CBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---E-EEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3569999999999999999999999999883 2 333 6788999999999999999999985 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98763
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-14 Score=136.20 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=75.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEE-ECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5689999999999999999999999999999875 56777899999999999999999999985 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++++
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-15 Score=143.03 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeee--------eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
.+.++|||+|||.++++++|+++|++||.|.. |.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35689999999999999999999999999988 654 45667889999999999999999999985 899999
Q ss_pred ceEEEEEeccCCC
Q 001060 1102 GRQVYIEERRPNT 1114 (1169)
Q Consensus 1102 g~~l~V~~~r~~~ 1114 (1169)
|+.|+|++++++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998764
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=126.61 Aligned_cols=75 Identities=29% Similarity=0.390 Sum_probs=66.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC--CeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP--IQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~--~~i~g~~l~V~ 1108 (1169)
++++|||+|||+++|+++|+++|++||.|+++.+ + +.||||||+|++.++|.+||+. ++ ..|+||+|+|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-M------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-E------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 5789999999999999999999999999999764 3 2468999999999999999986 44 46899999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=146.48 Aligned_cols=247 Identities=11% Similarity=0.027 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------c
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------A 387 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~--------~ 387 (1169)
.+..+..+|...+++++++..|+++++..--...+..+.....|..++..+...|++++|+..|++++... +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 44556778889999999999999998721000111256677889999999999999999999999999884 5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVF-------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET----- 455 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----- 455 (1169)
....+|..++.++...|++++|+.+|++++.+. .+....++..++.++...|++++|+.+|+++ +++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~ 187 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA-LEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHh
Confidence 567799999999999999999999999999874 2445678889999999999999999999998 555
Q ss_pred ---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc---cCchHHHHHHH------HHHHHHHhCCHHHHHHH
Q 001060 456 ---SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH---SQTLPMLYAQY------SRFLHLVSRNAEKARQI 523 (1169)
Q Consensus 456 ---~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~---~~~~~~l~~~~------a~~~~~~~g~~e~Ar~i 523 (1169)
.|....+|..++.++...|++++|+.+|++++...+.... ......+|... +..... .+.+.+|...
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~ 266 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD-GTSFGEYGGW 266 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--------CCSCCCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh-HHHHHHHHHH
Confidence 6777888999999999999999999999999986432100 00000111111 111111 3334444455
Q ss_pred HHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 524 LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 524 ~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+++++...|....++..++.+....++ .+.+..+|++++..
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 555555555555555555555555544 34455555555543
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-14 Score=134.29 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=63.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE-----E
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ-----V 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~-----l 1105 (1169)
..++|||+|||+++|+++|+++|++||.|..|.| +.+ |||||+|.+.++|.+||+. ++..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-CTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 3589999999999999999999999999999765 222 8999999999999999985 999999998 7
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|...+++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 787776643
|
| >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=121.92 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=66.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+..|||+||++.+|+++|+++|.+||+|+++++.. +||||||+|.+.++|.+|++. |+..++||.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 47899999999999999999999999999987522 679999999999999999987 8999999999999874
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=140.55 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEE-EecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999875 56777899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87643
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=123.55 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=67.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56999999999999999999999999999997642 35999999999999999976 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87643
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=131.74 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=72.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+.++. .+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 56899999999999999999999999999665433322 2788999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87643
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=127.67 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 35689999999999999999999999999999875 3444 688999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87643
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-14 Score=132.20 Aligned_cols=81 Identities=12% Similarity=0.277 Sum_probs=73.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|.. ..+.++.+|+++|||||+|.+.++|.+||++++..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999987 23566678899999999999999999999988999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-14 Score=128.04 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=68.3
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||+ ++++++|+++|++||.|..+.+ ++|||||+|.+.++|.+||.. ++..++|+.|+|++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 569999999998 9999999999999999999764 268999999999999999986 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987543
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-14 Score=135.28 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||.+++..|+|+.|.|..+.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~-~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCE-EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 5689999999999999999999999999988644 456678999999999999999999999988999999999999876
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=135.02 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+.+|...+++++++..|++++. .+|.....|..++..+.+.|++++|+..|+++|..+|.++++|..++.++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4466777899999999999987 78888889999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH-HHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA-YQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~-~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
...|++++|+..|++++++. |+++.+|+.+|.++.+.|++++|... ++++ ++++|++..+|..++.++.+.|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a-l~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERA-AKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH-HHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999987 89999999999999999998876665 5887 88999999999999988887764
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=131.72 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=75.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRL-VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEE-EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 35689999999999999999999999999999875 55677899999999999999999999975 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 88754
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=129.15 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V 1107 (1169)
+.++|||+|||.++|+++|+++|++||. |..+.+...++.+|+++|||||+|.+.++|.+||.. + ++.|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 999875436778889999999999999999999986 4 59999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987643
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=129.27 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.+ ++++ ++++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE-CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE-EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5689999999999999999999999999999875 3343 35899999999999999999986 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=127.04 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=72.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCE-EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4589999999999999999999999999998765 55677899999999999999999999985 999999999999986
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=124.16 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V 1107 (1169)
.++++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+||+. ++..|+|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 35689999999999999999999999999999754 32 269999999999999999974 588999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++.+.-
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987643
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=129.12 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++| .|..|.| +.++ +|+++|||||+|.+.++|.+||.+++..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHL-LKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEE-CCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEE-EECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999 8888765 4454 4899999999999999999999889999999999998775
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=137.76 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR----------------YVLCMEASGSMDLAHNALARATHV 419 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~----------------~a~~l~~~g~~e~A~~vl~rAl~~ 419 (1169)
.+.+...+..+.+.|++++|+..|++++...|.++++|+. ++.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556677777788999999999999999999999999999 999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhCCCccC
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN--LEDAFSLYEQAIAIEKGKEHSQ 497 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~--~e~A~~iy~~Al~~~~~~~~~~ 497 (1169)
. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.++...|+ .+.+...|++++...+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK------ 155 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc------
Confidence 8 899999999999999999999999999998 88999999999999998866654 4566777777664331
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 498 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 498 ~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
....+...+..... .|++++|+..|++|++++|++
T Consensus 156 -~~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 156 -MQYARYRDGLSKLF-TTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -HHHHHHHHHHHHHH-HHTHHHHHHHHHHHTTTSCCH
T ss_pred -hhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCH
Confidence 11234444545444 889999999999999999975
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=127.55 Aligned_cols=79 Identities=27% Similarity=0.321 Sum_probs=72.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+.+|+++|+++|++||.|+.|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35699999999999999999999999999999875 4455 899999999999999999999986 99999999999998
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-14 Score=124.04 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC-CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999864 55777899999999999999999999999999999999998763
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=128.90 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=71.5
Q ss_pred CceEEEEecCCCCC------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece-
Q 001060 1032 EVKSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR- 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~- 1103 (1169)
..++|||+|||+.+ |+++|+++|++||.|.+|.| . +.+|+++|||||+|.+.++|.+||.. +|..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i--~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--P-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEEC--C-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEe--e-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 46899999999999 78999999999999999764 2 56889999999999999999999986 89999998
Q ss_pred EEEEEeccCC
Q 001060 1104 QVYIEERRPN 1113 (1169)
Q Consensus 1104 ~l~V~~~r~~ 1113 (1169)
.|+|+.++..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988754
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-14 Score=122.94 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=69.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++..+..|+|+.|+|+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999875 56777899999999999999999999998559999999999875
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=137.00 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|.++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC-CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999875 55777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++.+
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87643
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=128.37 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=68.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V 1107 (1169)
.++++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+||+. + +..|+|+.|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EG------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eC------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 35789999999999999999999999999999865 32 269999999999999999986 3 68999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++.-
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99987644
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=125.10 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=67.0
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V 1107 (1169)
++++|||+|||+ ++|+++|+++|++||.|.+|.| ++ .+|||||+|++.++|.+||+. + +..|+||.|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 578999999999 9999999999999999999764 32 348999999999999999985 4 57799999999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
++++.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998643
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=131.31 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=71.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC---eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++|+++|+++|++||. |..|+| ++++. |+++|||||+|.+.++|.+||+.++..|+||.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEE-EECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 5689999999999999999999999999 888775 44554 899999999999999999999999999999999998
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
.+..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=136.12 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=76.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC-CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999864 55677899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+++...
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987644
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=128.53 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=73.0
Q ss_pred CceEEEEecCCCCCCHHHHH---HHHhcCCCeeeeeEEeecCCC---cccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE---EEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~~~---g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+.++|||+|||+++++++|+ ++|++||.|..|.| ++++.+ ++++|||||+|.+.++|.+||+. ++..|+|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i-~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE-ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 46899999999999999999 99999999999876 445543 35669999999999999999987 999999999
Q ss_pred EEEEeccCCC
Q 001060 1105 VYIEERRPNT 1114 (1169)
Q Consensus 1105 l~V~~~r~~~ 1114 (1169)
|+|++++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998865
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=129.23 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+++|||+|||+++++++|+++|++|| .|..+.|. . ++++|||||+|.+.++|++||+. ++..|+|+.|+|+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN--T---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--S---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--c---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 468999999999999999999999999 89986542 1 24789999999999999999976 89999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-13 Score=122.58 Aligned_cols=74 Identities=31% Similarity=0.417 Sum_probs=67.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC--CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++|+++|+++|++| |.|..+.+ .+|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 56899999999999999999999999 88988643 357999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=137.18 Aligned_cols=234 Identities=10% Similarity=0.079 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhccCCCHHHHHHHHHHH----Hhhc---CCH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--SMDKVVEVYERAVQGVTYSVDIWLHYCIFA----INTY---GDP 186 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~--~~e~A~~l~eraL~~~P~s~~lw~~y~~~~----~~~~---~~~ 186 (1169)
.-++|..+++++|..+|.++.+|.....+....+ .+++++++++++|..+|.+..+|.+-..++ . .. +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~-~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-hccccCCH
Confidence 3356777778888888888888877777777777 777888888888887787878877776665 3 33 567
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHH
Q 001060 187 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS--RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264 (1169)
Q Consensus 187 e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~--~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 264 (1169)
++++..++++++. ++.+..+|..-.-.....+.++ .+...+.++|+.
T Consensus 127 ~~EL~~~~~~l~~---~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---------------------------- 175 (306)
T 3dra_A 127 YREFDILEAMLSS---DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---------------------------- 175 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----------------------------
Confidence 7777778877773 4445566655554444444433 344444444433
Q ss_pred HHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001060 265 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344 (1169)
Q Consensus 265 ea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~ 344 (1169)
T Consensus 176 -------------------------------------------------------------------------------- 175 (306)
T 3dra_A 176 -------------------------------------------------------------------------------- 175 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCChhcHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Q 001060 345 YFHVKPLSVTELENWHNYLDFIERDGD------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL-AHNALARAT 417 (1169)
Q Consensus 345 ~~~v~pl~~~~~~~W~~yl~~~~~~gd------~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~-A~~vl~rAl 417 (1169)
++.+..+|+.........+. +++++..++++|..+|.+..+|..+..++...|...+ +..++.+++
T Consensus 176 -------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 176 -------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp -------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred -------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33333444433333322222 5566777788888888888888877777777766433 445555555
Q ss_pred HHh--hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 418 HVF--VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 418 ~~~--~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
.+. .+.++.++..++.++.+.|++++|.++|+++..+++|-....|...+.
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 432 155777888888888888888888888888743478888877776553
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=134.52 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCC---eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
.+.++|||+|||+++|+++|+++|++||. |..|.| ++++. |+++|||||+|.+.++|.+||+.++..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i-~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE-EECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 35689999999999999999999999999 888775 44555 99999999999999999999998899999999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
..+.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 88754
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=125.88 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++++++|+++|++||.|+.+ ..+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467999999999999999999999999998753 34678999999999999999999985 8999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998764
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-14 Score=126.33 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|..+.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA-ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEE-ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999999999875 55777899999999999999999999986 899999998877654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=126.84 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=74.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+++|||+|||.++++++|+++|++||.|..|.| ++++ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEE-ECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45799999999999999999999999999999875 4455 899999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=123.64 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||.++|+++|+++|++||.|. +.+. +++++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-----EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3568999999999999999999999999996 5443 246789999999999999999976 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+++++
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=121.46 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=67.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+. ++||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56899999999999999999999999999997642 35999999999999999986 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=130.63 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=69.7
Q ss_pred CceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++++|||+|||+.+++++|+ ++|++||.|.+|.+ ..+|+++|||||+|.+.++|.+||.. +|..|.|+.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i----~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV----DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE----CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe----ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 45899999999999999876 69999999988643 23678999999999999999999976 89999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|++++++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998754
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=128.83 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||. +++.|+|+.|.|..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI-ITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 35689999999999999999999999999999875 4455 89999999999999999999999 999999999999988
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7653
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=123.06 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=66.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~-~~i~g~~l~V~ 1108 (1169)
+.++|||+|||.++|+++|+++|++||. |..+. + .++|||||+|.+.++|.+||+. ++ ..|+|+.|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~--~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQV--L------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCE--E------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE--E------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 4589999999999999999999999999 66543 2 2468999999999999999985 88 99999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998753
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-13 Score=124.87 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEE
Q 001060 1030 EGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l 1105 (1169)
..++++|||+|||++ +++++|+++|++||.|.+|.| + ++||||||+|++.++|.+||+. ++..|+||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-M------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-e------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345789999999998 999999999999999999765 2 2479999999999999999985 4678999999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|++++.+.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999987654
|
| >3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-13 Score=137.84 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=94.9
Q ss_pred chhHhHHHHHHHHhhhhC-----ccccccccc-CCceEE-EEcCCc--------------------------cc------
Q 001060 721 AQVGSYFVGQYYQVLQQQ-----PDLVHQFYS-DASSMI-RVDGDS--------------------------TE------ 761 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~s~~~-~~~g~~--------------------------~~------ 761 (1169)
..++..|+++||..+++. |..|..+|+ ++|.|. +.+... ..
T Consensus 13 ~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~~r 92 (205)
T 3nv0_A 13 RTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAANR 92 (205)
T ss_dssp HHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTTSS
T ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHHHH
Confidence 357889999999999987 899999999 577765 222110 00
Q ss_pred ---chhhHHHHHHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEec--------CccccceeEEEEEEEeeC-Ce
Q 001060 762 ---SASSMLDIHSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTK--------EFCRRRKFVQTFFLAPQE-KG 827 (1169)
Q Consensus 762 ---~~~~~~~I~~~~~~l~~~~~~i~--~~d~q~~~~~~ilv~v~G~~~~~--------~~~~~~~F~q~F~L~~~~-~~ 827 (1169)
-..|.++|.++|.+||.+.+.+. +||||+..+++|+|+|+|.+... +..+.|.|+|||+|.|.+ ++
T Consensus 93 ~~~L~~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g~ 172 (205)
T 3nv0_A 93 ASRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGK 172 (205)
T ss_dssp CCSCEEHHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTTC
T ss_pred HHHHhhCHHHHHHHHHhCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCCc
Confidence 11477899999999998888777 48999988888999999999975 124689999999999986 79
Q ss_pred EEEEcceEEec
Q 001060 828 YFVLNDIFHFL 838 (1169)
Q Consensus 828 y~v~nDifr~~ 838 (1169)
|+|+||++-.-
T Consensus 173 ~~I~ND~L~Ir 183 (205)
T 3nv0_A 173 VAIVSDQLFIS 183 (205)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEecEEEee
Confidence 99999999543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-12 Score=159.57 Aligned_cols=179 Identities=13% Similarity=0.004 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g 404 (1169)
...+++++|+..|++++.+.+-....++|...+.|..++..+...|++++|+..|++++...|.+.++|+.++.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 35678899999999999211111112678889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++++|+..|++++++. |++..+|+.+|.++.+.|++++ +..|+++ ++++|++..+|+.++.++.++|++++|+..|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a-l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTV-WSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHH-HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988 8999999999999999999999 9999998 88999999999999999999999999999999
Q ss_pred HHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 485 QAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 485 ~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+++++.| ..+..|..++..+..
T Consensus 559 ~al~l~P------~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSR------HFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTST------THHHHHHHHHHHTC-
T ss_pred hhcccCc------ccHHHHHHHHHHHHc
Confidence 9999875 346778888777544
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=122.44 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=66.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+||+. ++..|+|+.|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 5689999999999999999999999999999754 32 368999999999999999975 4677999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998754
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=131.58 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=71.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-eecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35699999999999999999999999999999864 56777899999999999999999999975 89999999999986
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-13 Score=122.52 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=64.7
Q ss_pred eEEEEecCCCCC------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece-EE
Q 001060 1034 KSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-QV 1105 (1169)
Q Consensus 1034 ~~i~V~nlp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~-~l 1105 (1169)
++|||+|||..+ ++++|+++|++||.|.++.+ . +.+|+++|||||+|.+.++|.+||.. +|..|+|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--P-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--C-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--c-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 789999999999 77999999999999999764 3 56889999999999999999999986 89999999 88
Q ss_pred EE
Q 001060 1106 YI 1107 (1169)
Q Consensus 1106 ~V 1107 (1169)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.5e-13 Score=125.54 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=72.7
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee--------
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-------- 1100 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i-------- 1100 (1169)
+.+.++|||+|||.++|+++|+++|++||.|..+.| ++++ +|+++|||||+|.+.++|.+||.. ++..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 345689999999999999999999999999999875 4455 889999999999999999999985 89888
Q ss_pred eceEEEEEeccCC
Q 001060 1101 AGRQVYIEERRPN 1113 (1169)
Q Consensus 1101 ~g~~l~V~~~r~~ 1113 (1169)
.|+.|.|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5778999998864
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-14 Score=126.82 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=70.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.+ |.+|+.. ++..|+|+.|+|+.+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL-IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE-CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999875 567778999999999999999 9999987 89999999999999877
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=126.54 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=67.2
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..++|||+|||.+ +++++|+++|++||.|..|.| ++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4589999999999 999999999999999999764 468999999999999999965 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+++..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88643
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-13 Score=130.05 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCC---eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
.+.++|||+|||+++|+++|+++|+.||. |..|.| +.++. |+++|||||+|.+.++|.+||..++..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF-LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC-CCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE-EECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 35689999999999999999999999998 888765 44554 89999999999999999999998899999999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
..+.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 88764
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-13 Score=121.28 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+||..++..|+|+.|+|+.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v---~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV---VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE---EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 35799999999999999999999999999985 45665654 9999999999999999988999999999999876
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-13 Score=121.77 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=66.9
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||. ++++++|+++|++||.|..+.+ .+|||||+|.+.++|.+||.. ++..++|+.|+|++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 458999999998 9999999999999999999764 268999999999999999985 89999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=124.92 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=67.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++|+++|+++|++||.|..+.+ +++ ++|||||+|.+.++|.+|++. ++..|+|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-ARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE-ESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999765 322 679999999999999999986 89999999999999987
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-13 Score=130.87 Aligned_cols=79 Identities=27% Similarity=0.132 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCe----eeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI----KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i----~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
+.++|||+|||+++|+++|+++|++||.| ..|.| +.+ .+|+++|||||+|.+.++|.+||+.++..|+||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i-~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILF-VTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEE-EEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEE-EEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999999999999999986 57654 344 5899999999999999999999999999999999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87653
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-13 Score=124.46 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||.++++++|+++|++||.|..|.| +++ +|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-ETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 35689999999999999999999999999999765 222 68999999999999999966 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-11 Score=134.54 Aligned_cols=214 Identities=16% Similarity=0.136 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC------CHHHHHHHHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEA 402 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~------~~e~W~~~a~~l~~ 402 (1169)
++++++..|+++. ..+...|++++|+..|++++.+.+. ...+|..++.++..
T Consensus 32 ~~~~A~~~~~~a~----------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQAA----------------------TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHHH----------------------HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4777777776653 3456789999999999999998532 25689999999999
Q ss_pred cCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQN-GDIDGARAAYQLVHTETSPGL------LEAIIKHANME 470 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~-g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e 470 (1169)
.|++++|+..|++|+++.+.. ...+|..++.++... |++++|+..|+++ +++.|.. ..++..++.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHH
Confidence 999999999999999988321 145788899999996 9999999999998 6666643 56789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH-----HHHHHh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL-----EALIHF 544 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~-~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~-----~~~a~~ 544 (1169)
.++|++++|+.+|++++...+..... .....+|..++.++.. .|++++|+..|+++++++|...... ..++..
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~ 247 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999988653221 1223467777777666 9999999999999999998765432 222221
Q ss_pred HhhCCChhHHHHHHHHHHHHhhc
Q 001060 545 ESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 545 E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
. ..++.+.++.+...|++++..
T Consensus 248 ~-~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 248 V-NEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp H-HTTCTTTHHHHHHHHTTSSCC
T ss_pred H-HcCCHHHHHHHHHHhccCCcc
Confidence 1 123334455666667666553
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=124.16 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=71.4
Q ss_pred CceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++++|||+|||.++++++|+ ++|++||.|..|.+ . .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i--~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--S--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC--C--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEE--E--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 56899999999999999999 99999999998654 2 3678899999999999999999986 99999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|++++++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=121.91 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=68.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.+. +.+|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 56899999999999999999999999999997642 2368999999999999999976 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=124.18 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=68.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++|||+|||.++++++|+++|++||.|.++.+. +++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 45899999999999999999999999999997653 3579999999999999999976 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-13 Score=133.24 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=126.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH
Q 001060 363 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 363 l~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~ 442 (1169)
+..+...|++++++..|++++...|.++..|+.+|.++...|++++|+..|++++++. |+++.+|+.+|.++...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444567889999999999999999999999999999999999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 443 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL-YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 443 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i-y~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
+|+..|+++ ++++|++..+|+.++.++.+.|+++++... +++|+++.|.+ +.+|...+.++.. .|
T Consensus 83 ~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~~l~~~ll~~-~G 148 (150)
T 4ga2_A 83 KAVECYRRS-VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVYKLKEQLLDC-EG 148 (150)
T ss_dssp HHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHH-hC
Confidence 999999998 899999999999999999999999776555 69999998743 6777777777554 55
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=124.34 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=68.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+.. ++..|+|+.|+|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356899999999999999999999999999997653 58999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-11 Score=134.46 Aligned_cols=231 Identities=9% Similarity=0.013 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhccCCHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG--DFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g--d~~~a~~lyeraL~~~~~~~e~W 393 (1169)
.+.....+....+..++++..++++|. ++|....+|..-...+...+ ++++++.+++++|..+|.+..+|
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~--------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW 106 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGIN--------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW 106 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH
Confidence 344444444444555789999999999 89999999999999988888 99999999999999999999999
Q ss_pred HHHHHHH----HHc---CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCCChHHHHH
Q 001060 394 IRYVLCM----EAS---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--GARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 394 ~~~a~~l----~~~---g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~--~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
.....++ ... +++++++.+++++++++ |++..+|.....++...|.++ ++++.++++ ++.+|.+..+|.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~-i~~d~~N~sAW~ 184 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV-IDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH-HHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHH-HHhCCCCHHHHH
Confidence 9999988 666 78999999999999988 899999999999999999988 999999998 789999999999
Q ss_pred HHHHHHHHcCC------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHhhhc---CCC
Q 001060 465 KHANMERRLGN------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-AEKARQILVDSLDHV---QLS 534 (1169)
Q Consensus 465 ~~a~~e~r~g~------~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~e~Ar~i~~kAl~~~---p~s 534 (1169)
.++.+..+.+. ++++...++++|...|.+ ...|.....++.. .|. .++...+++++++.. +.+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------~SaW~y~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------PSTWNYLLGIHER-FDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH-TTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHh-cCCChHHHHHHHHHHHhccCCCCCC
Confidence 99999988887 899999999999998753 5688777666665 554 666778888888876 788
Q ss_pred HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 535 KPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
...+..++......++ .+.+..+|+++..
T Consensus 258 ~~al~~la~~~~~~~~---~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKK---YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC---HHHHHHHHHHHHh
Confidence 8888877777766665 6778899999876
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=118.72 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=66.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|+ ++|+++|+++|++||.|..|.| ++++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999996 8999999999999999999764 24679999999999999999976 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=131.40 Aligned_cols=237 Identities=9% Similarity=-0.034 Sum_probs=192.5
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd----------~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
++++..++.+|. ++|....+|..-...+...+. +++.+.+++.+|..+|.+..+|.....++
T Consensus 47 ~eaL~~t~~~L~--------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 468899999998 899999999998777665544 67899999999999999999999999999
Q ss_pred HHcC--ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc----
Q 001060 401 EASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGARAAYQLVHTETSPGLLEAIIKHANMERRL---- 473 (1169)
Q Consensus 401 ~~~g--~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~-~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---- 473 (1169)
...+ .+++++.++.++++++ |++..+|.....+....|. ++++++.+.++ ++.+|.+..+|..++.+..+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~-I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 8888 4899999999999988 8999999999999999998 69999999998 789999999999999988877
Q ss_pred ----------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhhhcCC
Q 001060 474 ----------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 474 ----------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~e~Ar~i~~kAl~~~p~ 533 (1169)
+.++++..++.++|...|++ ..+|..+-.++.... +.++++++.++++++..|+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 45889999999999998754 557754444433322 3489999999999999999
Q ss_pred CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 534 SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 534 s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
+.-.+...+.+...+......+.++..+++.+..+|.. -.+|.+++.++.
T Consensus 271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r------------~~~y~d~~~~~~ 320 (331)
T 3dss_A 271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR------------AAYLDDLRSKFL 320 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch------------hhHHHHHHHHHH
Confidence 98777777766554332222456788888888876532 345666665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-11 Score=138.78 Aligned_cols=314 Identities=11% Similarity=0.060 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH----hCCHHHHH---------HHHHHHHh
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHEAR----VGSMDKVV---------EVYERAVQ 163 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~---~~~~W~~~a~~e~~----~~~~e~A~---------~l~eraL~ 163 (1169)
+.|+..+. ++++++|..+++.+...... +..+.+.|..+..+ .+.+..+. +.+++.-.
T Consensus 17 ~~wy~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 17 NEWYKMIR------QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHH------HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 45666555 36899999999988765543 45555444433332 23333333 55555432
Q ss_pred cc-CCC----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 164 GV-TYS----VDIWLHYCIFAINTYGDPETIRRLFERGLAYVG---TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 164 ~~-P~s----~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g---~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
.. +.+ ..+|+..+.+.. ..|++++|+..|++|+.... .+.....++...+.+....++++.|...|++++.
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 21 111 113444455555 78999999999999998643 2222345666777777788999999999999876
Q ss_pred cchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 236 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
+-..... + ......
T Consensus 170 ~~~~~~~-----~-------------------------------------------------------------~~~~~~ 183 (378)
T 3q15_A 170 IYQNHPL-----Y-------------------------------------------------------------SIRTIQ 183 (378)
T ss_dssp HHHTSTT-----C-------------------------------------------------------------HHHHHH
T ss_pred HHHhCCC-----c-------------------------------------------------------------hhhHHH
Confidence 5221000 0 000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hccCCH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----ACANYP 390 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~-----~~~~~~ 390 (1169)
....++.+|...+++++|+..|+++|.. +............+..++..+...|++++|+..|++++. ..+...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALEL--AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 2334466788889999999999999861 000011123446788888899999999999999999999 677778
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCChHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
.++..++.++...|++++|...|++++++... .....+..++.++...++ +.+|+..+++. ...+....++
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~ 339 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHH
Confidence 89999999999999999999999999998632 122334445666667777 88898888873 4456667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
..++.++...|++++|...|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-13 Score=128.99 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=68.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCee--eeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||+++|+++|+++|++| .|. .|.| ++++. |+++|||||+|.+.++|.+||+.++..|+||.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i-~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITL-PVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEEC-CCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEE-EECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 45889999999999999999999999 566 6654 44554 9999999999999999999999888999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-10 Score=131.05 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----CHHHHHHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRY 396 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~-----~~e~W~~~ 396 (1169)
.+|...+++++++..|++++...--...+..+.....+..++..+...|++++|+.+|++++..++. ....|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 3445556666666666666541000000011334456667777888899999999999999998764 34678889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhc-cChHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVK-RLPEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAIIKH 466 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p-~~~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~~~ 466 (1169)
+.++...|++++|...+++++.+... ..+..|. ..+.++...|++++|+..++++ ....+.. ...+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS-CCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC-CCCCCCcchhhHHHHHHH
Confidence 99999999999999999999987522 2222333 2345577899999999999997 5555542 3357788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
+.++...|++++|..++++++...+..........++..++..+.. .|+.++|+..|++++...+.. .+..+..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~~~~-----g~~~~~~ 333 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLANRT-----GFISHFV 333 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHH-----CCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhccc-----cHHHHHH
Confidence 9999999999999999999998765322111223466777887776 999999999999999875421 1222222
Q ss_pred hCCChhHHHHHHHHHHHHhhcCC
Q 001060 547 IQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 547 ~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
..| +.+..++.+++...+
T Consensus 334 ~~g-----~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 334 IEG-----EAMAQQLRQLIQLNT 351 (373)
T ss_dssp TTH-----HHHHHHHHHHHHTTC
T ss_pred Hcc-----HHHHHHHHHHHhCCC
Confidence 221 335666777666544
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=120.95 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=68.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee--ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~--g~~l~V~ 1108 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+ +. .+|||||+|.+.++|.+||+. ++..|+ |+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VK------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CS------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eC------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 4589999999999999999999999999999764 21 268999999999999999986 899999 9999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++++
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=136.09 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHH
Q 001060 330 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCME 401 (1169)
Q Consensus 330 ~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~--------~~~~e~W~~~a~~l~ 401 (1169)
+++++..+++.+. +.++.....|..++..+...|++++|+..|++++... +....+|..++.++.
T Consensus 24 ~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 24 CKQALEDLEKTSG-------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp HHHHHHHHHHHHC-------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 3445555665543 1346778899999999999999999999999999885 556779999999999
Q ss_pred HcCChHHHHHHHHHHHHHh-------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHH
Q 001060 402 ASGSMDLAHNALARATHVF-------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKH 466 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~-------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~ 466 (1169)
..|++++|+..|++++.+. .+....++..++.++...|++++|+.+|+++ +++ .|....++..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA-LEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999874 2556788999999999999999999999998 555 67778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCC---ccCchHHHHHHHHHHHHHHhC------CHHHHHHHHHHHhhhcCCCHHH
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKE---HSQTLPMLYAQYSRFLHLVSR------NAEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~---~~~~~~~l~~~~a~~~~~~~g------~~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
+.++.+.|++++|+.+|++++...+... .......+|.....+... .+ .+.++..+++......|.....
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES-KDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT-TCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999998743210 001111233333333221 11 1333333333333333444455
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 538 LEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 538 ~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+..++.+....++ .+.+..+|++++..
T Consensus 255 ~~~la~~~~~~g~---~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGK---LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 5556666655555 44566666666553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-12 Score=140.39 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-----
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----- 389 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~----- 389 (1169)
+......+|...+++++|+..|++++.- +... -++ .....|..++..+...|++++|+..|++++...+..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~-~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADY-QKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH-HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444567888999999999999999871 0000 122 235788899999999999999999999999987643
Q ss_pred -HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-
Q 001060 390 -PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE- 461 (1169)
Q Consensus 390 -~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~- 461 (1169)
...|..++.++... |++++|+..|++|+++.+... ..++..++.++.+.|++++|+.+|+++ +++.|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 194 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHhcCCcc
Confidence 46899999999996 999999999999999884321 467888999999999999999999998 677776532
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhhcCCC
Q 001060 462 ------AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH-LVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 462 ------~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~-~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.|+.++.++..+|++++|+..|++++.+.|....... ..++..++..+. ...+++++|...|++++.++|..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 6788999999999999999999999998874321111 112333333322 12457999999999999888866
Q ss_pred HHHHH
Q 001060 535 KPLLE 539 (1169)
Q Consensus 535 ~~l~~ 539 (1169)
..++.
T Consensus 274 ~~~~~ 278 (292)
T 1qqe_A 274 ITILN 278 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=116.23 Aligned_cols=74 Identities=23% Similarity=0.429 Sum_probs=66.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~V~ 1108 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.+. + ++|||||+|.+.++|.+|+.. ++..|+|+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-Q------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-G------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-C------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356899999999999999999999999999997652 2 468999999999999999984 7999999999999
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
++|
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=135.41 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC---CHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIR 395 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~---~~e~W~~ 395 (1169)
.++..+...+++++|+..|+++|+. .|.++.....|..++..+.+.|++++|+..|++++...|. .+++|+.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3456788899999999999999982 2333333889999999999999999999999999999874 4678999
Q ss_pred HHHHHHH--------cCChHHHHHHHHHHHHHhhccChHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q 001060 396 YVLCMEA--------SGSMDLAHNALARATHVFVKRLPEIH-----------------LFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 396 ~a~~l~~--------~g~~e~A~~vl~rAl~~~~p~~~~l~-----------------~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
++.++.. .|++++|+..|++++..+ |+++.++ +.+|.++...|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999 999999999999999988 7776666 7789999999999999999999
Q ss_pred HhhhcCCC---hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhCC
Q 001060 451 VHTETSPG---LLEAIIKHANMERRL----------GNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 451 a~~~~~P~---~~~~~~~~a~~e~r~----------g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+ ++..|+ ...+|+.++.++..+ |++++|+.+|++++...|+.
T Consensus 174 ~-l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 174 V-FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp H-HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred H-HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 8 777888 677899999998877 89999999999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-11 Score=130.24 Aligned_cols=173 Identities=9% Similarity=0.003 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH---HHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IHL 429 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~---l~~ 429 (1169)
...|...+..+.+.|++++|+..|++++...|.+ .++|+.++.++...|++++|+..|+++++.+ |+++. +++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 3567777777788999999999999999998876 4799999999999999999999999999988 66654 677
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcC
Q 001060 430 FAARFKEQ------------------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLG 474 (1169)
Q Consensus 430 ~~a~~~e~------------------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g 474 (1169)
.++.++.. .|++++|+..|+++ ++..|++..++ +..+.++.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHH-HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77777665 46788888888887 77788876554 33444555555
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
++++|+..|+++++..|+. +..+.++..++..+.+ .|++++|++.|++++...|++
T Consensus 162 ~~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDT---QATRDALPLMENAYRQ-MQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCCSCC
T ss_pred cHHHHHHHHHHHHHHCcCC---CccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCc
Confidence 5555555555555555431 1223445555555444 555555555555555555543
|
| >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=123.81 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=69.0
Q ss_pred eEEEEecC----CCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECC----HHH----HHHHHH--h-CCC
Q 001060 1034 KSVYVRNL----PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED----ISG----VQNAIQ--A-SPI 1098 (1169)
Q Consensus 1034 ~~i~V~nl----p~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~----~~~----a~~Ai~--~-~~~ 1098 (1169)
..|||+|| |+.+++.+|+++|++||+|.++.+ +.|+.||+++|||||+|.+ +++ |.+||. . ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~l-i~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEA-FNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEE-EECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999999999985 6799999999999999996 322 788887 4 899
Q ss_pred eeeceEEEEEeccC
Q 001060 1099 QLAGRQVYIEERRP 1112 (1169)
Q Consensus 1099 ~i~g~~l~V~~~r~ 1112 (1169)
.|+||.|+|+..+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998764
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=119.11 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=60.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||+++|+++|+++|++||.|.+|.|. + ++||||||+|++.++|.++ ....+.++|+.|.|..+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~-~-----~srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-K-----PFRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC-S-----SCCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe-e-----CCCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEc
Confidence 356899999999999999999999999999997652 2 2789999999999999843 22244556999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=130.89 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.+...+..+...|++++|+..|++++...|.+.++|+.++.++...|++++|+.+|++++... | ++.++...+.+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 45677888888899999999999999999999999999999999999999999999999999877 5 777776666543
Q ss_pred H-HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 436 E-QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 436 e-~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
. ..+...+|+..|+++ ++++|++..+|+.++.++...|++++|+..|++++...|.. ..+.++..++.++.. .
T Consensus 84 ~~~~~~~~~a~~~~~~a-l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~a~~~l~~~~~~-~ 157 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQE-LAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----QDGEVKKTFMDILSA-L 157 (176)
T ss_dssp HHHHHTSCHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----TTTHHHHHHHHHHHH-H
T ss_pred HHhhcccchHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ChHHHHHHHHHHHHH-h
Confidence 2 223344579999998 78999999999999999999999999999999999998642 124578888888776 9
Q ss_pred CCHHHHHHHHHHHhh
Q 001060 515 RNAEKARQILVDSLD 529 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~ 529 (1169)
|+.++|...|+++|.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999985
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-10 Score=132.50 Aligned_cols=240 Identities=11% Similarity=0.012 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-------H
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------P 390 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-------~ 390 (1169)
-.++..|...+++++|+..|+++++. ....+..+.....+..++.++...|++++|+..|++++...+.. .
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKE--LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH--HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 34466777889999999999999872 11112234567788888999999999999999999999886532 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cCCChH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TSPGLL 460 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~P~~~ 460 (1169)
.++..+|.++...|++++|...|++|+.+... ....++..+|.++...|++++|+..|+++ ++ .+|...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhHH
Confidence 57889999999999999999999999997631 13457888999999999999999999998 55 678888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhhcCCCHHH
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
.++..++.++.++|++++|+.+|++++.+...... +.....+..+..+ +...++ +.+|..++++. ...+....+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~l-y~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH-KFYKELFLFLQAV-YKETVDERKIHDLLSYFEKK-NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC-SCHHHHHHHHHHH-HSSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhC-CChhHHHHH
Confidence 89999999999999999999999999998653222 2222233333333 333666 78888887763 233334456
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 538 LEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 538 ~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
+..++.+-...++ .+.+...|++++.
T Consensus 339 ~~~la~~y~~~g~---~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCH---FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 6667777777776 5557777777765
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=135.77 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=73.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||.++|+++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|.++.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-eecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 479999999999999999999999999999875 5677789999999999999999999999899999999999999987
Q ss_pred CCC
Q 001060 1113 NTG 1115 (1169)
Q Consensus 1113 ~~~ 1115 (1169)
+..
T Consensus 183 k~~ 185 (196)
T 1l3k_A 183 KQE 185 (196)
T ss_dssp ---
T ss_pred hhH
Confidence 653
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=119.05 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=63.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.|. + .++|||||+|.+.++|++++. ..+.++|+.|+|..++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~-----~~~g~afV~f~~~~~a~~~~~-~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-K-----PFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-S-----SCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-c-----CCCCEEEEEECCHHHHHHHhc-CCceeCCEEEEEEecC
Confidence 35899999999999999999999999999997642 2 267999999999999986533 2566689999999988
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=123.29 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++++++|+++|++||.|..|.| . +++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--P-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--C-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--e-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999998653 2 2568999999999999999986 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=122.71 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=69.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++|+++|+++|++||.|..|.+. + ++.++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~-~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-N---TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-C---STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-e---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45899999999999999999999999999997653 2 345689999999999999999985 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-11 Score=131.57 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=173.0
Q ss_pred HcCChHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------hccChHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF-------VKRLPEIHLFAA 432 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~--------~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-------~p~~~~l~~~~a 432 (1169)
..|++++|+.+|++++..+ +....+|..++.++...|++++|+..|++++.+. .+....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4578888888888888854 4567899999999999999999999999999874 245677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC--CccCchHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK--EHSQTLPML 502 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~--~~~~~~~~l 502 (1169)
.++...|++++|+.+|+++ +++ .|....+|..++.++...|++++|+.+|++++...... ...+....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999998 444 57778899999999999999999999999999983110 012334567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhh---------cCCCHHHHHHHHHhHhhCCChhH---HHHHHHHHHHHhhcCCC
Q 001060 503 YAQYSRFLHLVSRNAEKARQILVDSLDH---------VQLSKPLLEALIHFESIQSSPKQ---IDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 503 ~~~~a~~~~~~~g~~e~Ar~i~~kAl~~---------~p~s~~l~~~~a~~E~~~~~~~~---~~~~r~l~eral~~~~~ 570 (1169)
+..++.++.. .|++++|+.+|+++++. .+....+|.....+....+.... ...+..+++.+.. +
T Consensus 172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 247 (283)
T 3edt_B 172 KNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---D 247 (283)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---C
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---C
Confidence 8888988877 99999999999999986 33444555555555544332221 1122222222111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 571 SPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 571 ~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
......++..........|+.+.+.+++++..+.
T Consensus 248 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 ------SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1234567888888889999999999999888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=128.24 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHH----------------HHHHHHHcCChHHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN----------------YLDFIERDGDFNKVVKLYERC 382 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~----------------yl~~~~~~gd~~~a~~lyera 382 (1169)
.++..+...+++++|+..|+++|+ ++|.+...|.. ++..+.+.|++++|+..|+++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345567788999999999999999 78999999999 999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhcCCChH
Q 001060 383 LIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--IDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~--~~~A~~~~~~a~~~~~P~~~ 460 (1169)
|..+|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++...|+ ...+...|.++ ....| ..
T Consensus 81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 157 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-SSPTK-MQ 157 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH-HH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCCCc-hh
Confidence 99999999999999999999999999999999999988 8999999999998866553 45566777775 33222 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
..|+..+......|++++|+..|++|+.+.|+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 35777788888899999999999999999864
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=129.63 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeE----EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i----~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ .++...+|+++|||||+|.+.++|.+||.. ++..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4589999999999999999999999999987511 122235788999999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|+++++..
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99998753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-11 Score=148.23 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=133.0
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
.|++++|+..|++++...|.+.++|+.++.++...|++++|+..|++++++. |++..+|+.+|.++...|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 001060 449 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RNAEKARQILV 525 (1169)
Q Consensus 449 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~~e~Ar~i~~ 525 (1169)
+++ ++++|++..+|+.++.++.+.|++++|+..|+++++..|. .+.++..++.++.. . |++++|+..|+
T Consensus 81 ~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQA-SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHH-HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 998 7889999999999999999999999999999999999863 26788889988877 8 99999999999
Q ss_pred HHhhhcCCCHHHHH
Q 001060 526 DSLDHVQLSKPLLE 539 (1169)
Q Consensus 526 kAl~~~p~s~~l~~ 539 (1169)
++++..|.+...+.
T Consensus 153 ~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 153 AAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHTCCCSCHHH
T ss_pred HHHhcCCcccChHH
Confidence 99999998765543
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=132.89 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|.|..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 35799999999999999999999999999999875 56777899999999999999999999999999999999999987
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
.++
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 654
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-12 Score=125.03 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=68.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~~ 1109 (1169)
..+|||+||++.+|+++|+++|++||.|++|.|. .+ +++|||||+|.+.++|.+|++. +|..|.| +.|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~--~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF--TK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEE--ES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEE--eC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4789999999999999999999999999997652 22 2578999999999999999987 8999965 9999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++.-
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 998643
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-12 Score=134.78 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. ++..+.|+.|+|..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4589999999999999999999999999999875 67888999999999999999999999987 899999999999887
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=119.09 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCceEEEE--ecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-----ec
Q 001060 1031 GEVKSVYV--RNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-----AG 1102 (1169)
Q Consensus 1031 ~~~~~i~V--~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i-----~g 1102 (1169)
.+.++||| +||++++|+++|+++|++||.|.+|.| .. .||||||+|.+.++|.+|++. +|..| .|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 35688999 679999999999999999999998643 21 368999999999999999986 89988 78
Q ss_pred eEEEEEeccCCCC
Q 001060 1103 RQVYIEERRPNTG 1115 (1169)
Q Consensus 1103 ~~l~V~~~r~~~~ 1115 (1169)
+.|.|.+++..+-
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 9999999886543
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-12 Score=129.82 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||+++++++|+++|++||.|+.|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE-CCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45799999999999999999999999999999875 4455 889999999999999999999986 89999999999998
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-09 Score=126.21 Aligned_cols=285 Identities=9% Similarity=0.014 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH--
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-- 390 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~-- 390 (1169)
.....+..++...+++++++..+++++.. .|.+.. ....+..++..+...|++++++..|++++...+...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEE-----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 45555667788889999999999999873 122211 223556667777889999999999999998865432
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-
Q 001060 391 ----EYWIRYVLCMEASGSMDLAHNALARATHVFVK-------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG- 458 (1169)
Q Consensus 391 ----e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~- 458 (1169)
..+..++.++...|++++|+..|++++.+... ....++..++.++...|++++|+.+|+++ +++.+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHhhcc
Confidence 23567788888999999999999999987631 23456777899999999999999999998 555543
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 459 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 459 ----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~--~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
....+..++.++...|++++|+.++++++...+.... +...... ...+.++.. .|++++|+..+++++...+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQM-TGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHSCCCCC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHH-CCCHHHHHHHHHhCCCCCC
Confidence 3567888999999999999999999999987543211 1101111 122333344 8999999999999998776
Q ss_pred CC----HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001060 533 LS----KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 608 (1169)
Q Consensus 533 ~s----~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~ 608 (1169)
.+ ...+..++.+....++ .+.+..++++++....... ......+++..........|+.+.+....++..
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 53 2234566666666676 4446666666655422111 122334466666777778899999999999998
Q ss_pred hhhCC
Q 001060 609 RLFLP 613 (1169)
Q Consensus 609 ~~~~~ 613 (1169)
++...
T Consensus 321 ~~~~~ 325 (373)
T 1hz4_A 321 KLANR 325 (373)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=135.04 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=150.7
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
|...+.++..+..+...|++++|+.+|+++|...|.+.++|+.++.++...|++++|+.+|++++... |+....++..+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cchHHHHHHHH
Confidence 45567888899888999999999999999999999999999999999999999999999999999887 66555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
..+.+.++.++|...|+++ ++++|++..+++.++.++...|++++|+..|++++...|+. ....++..++.++..
T Consensus 193 ~~l~~~~~~~~a~~~l~~a-l~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQ-VAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHH
Confidence 6677788888999999998 78899999999999999999999999999999999998742 125678888888776
Q ss_pred HhCCHHHHHHHHHHHhh
Q 001060 513 VSRNAEKARQILVDSLD 529 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~ 529 (1169)
.|+.++|...|+++|.
T Consensus 268 -~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 -LGTGDALASXYRRQLY 283 (287)
T ss_dssp -HCTTCHHHHHHHHHHH
T ss_pred -cCCCCcHHHHHHHHHH
Confidence 9999999999999985
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=115.91 Aligned_cols=78 Identities=10% Similarity=0.201 Sum_probs=68.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|..++.++.++.+| .|||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 458999999999999999999999999999974335555443 499999999999999985 999999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-11 Score=116.85 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=109.0
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|...+.|+..+..+.+.|++++|+..|+++|..+|.++.+|..++.++...|++++|+..|++++++. |++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 7888899999999998999999999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
+|.++...|++++|+..|+++ ++++|++.+++..++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDA-LQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHCcCCHHHHHHHHHhc
Confidence 999999999999999999998 789999999888777653
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-12 Score=127.07 Aligned_cols=77 Identities=31% Similarity=0.408 Sum_probs=69.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|.+|.| +++ ++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-ARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE-CSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-eeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4689999999999999999999999999999765 322 579999999999999999985 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=117.98 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=67.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~-afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
.-+|||+||++.+|+++|+++|++||.|.+|.|. . +.+|| |||+|.+.++|.+|++. +|..|.| +.|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-T-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-E-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-c-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4789999999999999999999999999998653 2 13578 99999999999999987 9999998 899999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
++++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998764
|
| >2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=109.10 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=62.8
Q ss_pred eEEEEecCCCCCCHHH----HHHHHhcC-CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1034 KSVYVRNLPSTVTAFE----IEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~----L~~~F~~~-G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
+.|||+|||+.+++++ |+++|++| |+|.+| +| |||||.|.+.++|.+|++. +|..|.||.|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 4499999999999988 55899999 599874 23 9999999999999999976 999999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
.+++.++.
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99988754
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-12 Score=129.76 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=74.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL-MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEEC-CCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 478999999999999999999999999999875 5566789999999999999999999999889999999999999987
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-12 Score=113.74 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=66.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++| .|.++.+ . +++|||||+|.+.++|.+|++. ++..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--D-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--E-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--e-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35899999999999999999999999 9998765 2 5789999999999999999985 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-12 Score=119.62 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=66.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC---cccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~---g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
..++|||+|||+++|+++|+++|++||.|. +. .+.++.+ |+++|||||+|.+.++|.+||+.. ..++|+.+.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~-~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD-WPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE-CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE-EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 458999999999999999999999999998 54 3555555 799999999999999999999875 35888888876
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
..++
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=138.97 Aligned_cols=311 Identities=11% Similarity=0.100 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
+++++|+.++++. +....|..+|....+.+++++|++.|.++ .+...|..-+.... ..|++++|+.+|+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae-~~g~~EeAi~yl~ 85 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 4799999999998 33469999999999999999999999875 34556666666555 6788999999888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHh
Q 001060 195 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 274 (1169)
Q Consensus 195 rAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~ 274 (1169)
.+++..+. ..+...++....+.|++.++..+|+. |.. .
T Consensus 86 ~ark~~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~--~-------------------------------- 123 (449)
T 1b89_A 86 MARKKARE----SYVETELIFALAKTNRLAELEEFING----PNN--A-------------------------------- 123 (449)
T ss_dssp ---------------------------CHHHHTTTTTC----C-------------------------------------
T ss_pred HHHHhCcc----chhHHHHHHHHHHhCCHHHHHHHHcC----CcH--H--------------------------------
Confidence 88874221 23333344444446666666544421 100 0
Q ss_pred hCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh
Q 001060 275 AAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 354 (1169)
Q Consensus 275 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~ 354 (1169)
.+...+..+...+.+++|+..|..+
T Consensus 124 -----------------------------------------a~~~IGd~~~~~g~yeeA~~~Y~~a-------------- 148 (449)
T 1b89_A 124 -----------------------------------------HIQQVGDRCYDEKMYDAAKLLYNNV-------------- 148 (449)
T ss_dssp ------------------------------------------------------CTTTHHHHHHHT--------------
T ss_pred -----------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHh--------------
Confidence 1111234556778888888888764
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
..|..+++.+.+.|+++.|+..|+++ .++..|......+...|+++.|..+... +.. .++-...+..+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~----~ad~l~~lv~~ 216 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV----HADELEELINY 216 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT----CHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh----CHhhHHHHHHH
Confidence 46999999999999999999999998 5789999999999999999999766654 223 33444467788
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+++.|.+++|..+|+++ +.+++.+..+|..++.++.+- +++.+.+++|...+.+.+-- .......+|..+..++..
T Consensus 217 Yek~G~~eEai~lLe~a-L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~-~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 217 YQDRGYFEELITMLEAA-LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-RAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHTTCHHHHHHHHHHH-TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 788999999999888877544 45566666666666555400 000113478877666555
Q ss_pred HhCCHHHHHHHHHHHhhh------------cCCCHHHHHHHHHhHhhC
Q 001060 513 VSRNAEKARQILVDSLDH------------VQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~------------~p~s~~l~~~~a~~E~~~ 548 (1169)
.++++.|...+-..... .+.+.+++...+.|-...
T Consensus 295 -~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 295 -YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp -TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred -hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 89999998877766544 566778887777777754
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=124.70 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=73.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4589999999999999999999999999999875 56777899999999999999999999985 999999999999987
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=125.55 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|..++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 479999999999999999999999999999875 56777899999999999999999999985 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=126.62 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=74.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI-MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3589999999999999999999999999999865 56777899999999999999999999975 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-11 Score=118.05 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~ 406 (1169)
..++..+-..|++++. ++|.+.+.|..++..+.+.|++++|+..|++++..+|.++.+|+.++.++...|++
T Consensus 15 l~~~~~~~~~l~~al~--------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 15 VIDAINSGATLKDINA--------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHHHHTSCCTGGGCC--------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCCHHHHhC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH
Confidence 3344444455667766 78889999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001060 407 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ +++.|+..
T Consensus 87 ~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a-l~l~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELV-IQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCCHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCHH
Confidence 99999999999887 888999999999999999999999999998 77788754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-11 Score=123.53 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
+...+...+++++++..|+++++ ++|.+...|..++..+...|++++|+..|++++...| ++.++...+.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 35567888999999999999998 7899999999999999999999999999999999999 88777666544
Q ss_pred HH-HcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh--HHHHHHHHHHHHHcCCH
Q 001060 400 ME-ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL--LEAIIKHANMERRLGNL 476 (1169)
Q Consensus 400 l~-~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~--~~~~~~~a~~e~r~g~~ 476 (1169)
.. ..+....|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++|+. ..+|..++.++..+|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI-LKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccChHHHHHHHHHHHHHhCCC
Confidence 32 2233445789999999988 899999999999999999999999999998 7889876 56999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001060 477 EDAFSLYEQAIAI 489 (1169)
Q Consensus 477 e~A~~iy~~Al~~ 489 (1169)
++|...|+++|..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999999864
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=128.98 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|..|+| .++ .+|+++|||||+|++.++|.+||...+..|+|+.|.|..++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i-~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EEC-TTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE-EEC-CCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4589999999999999999999999999999875 334 35889999999999999999999987789999999999876
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=130.63 Aligned_cols=83 Identities=20% Similarity=0.401 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||.++|+++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|.++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL-ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3489999999999999999999999999999875 56777899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=122.34 Aligned_cols=112 Identities=10% Similarity=-0.019 Sum_probs=105.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
|.++++.+|.+.++|+.++..+... |++++|..+|++++..+|.+..+|..++..+...|++++|+..|++++...|.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 5678899999999999999999884 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001060 168 SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~ 202 (1169)
++..|+.++..+. ..|++++|+..|+++++..+.
T Consensus 103 ~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 103 DYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999998 899999999999999997654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=128.98 Aligned_cols=169 Identities=13% Similarity=-0.007 Sum_probs=146.9
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
.|.+.+.++..+..+...|++++|+.+|+++++.. |+++.+++.++.++.+.|++++|+.+|+++ ....|+....++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~-~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTI-PLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhC-chhhcchHHHHHH
Confidence 38889999999999999999999999999999988 899999999999999999999999999998 7889987777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC--HHHHHHHHH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIH 543 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s--~~l~~~~a~ 543 (1169)
.+..+.+.++.+.|+..|++++...|+ .+.++..++..+.. .|++++|+..|+++++..|++ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 776677888889999999999999864 37799999999887 999999999999999999998 788888888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhh
Q 001060 544 FESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 544 ~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
+...+|..+ .+...|.++|.
T Consensus 264 ~~~~~g~~~---~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGD---ALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHcCCCC---cHHHHHHHHHH
Confidence 887777533 34555555543
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=110.55 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=63.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC----C-------CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i 1100 (1169)
+.++|||+|||+++++++|+++|++| | .|.++.+ . +.+|||||+|.+.++|.+|+..++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~------~~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-N------QDKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-C------SSSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-c------CCCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999 8 8888654 2 236999999999999999995599999
Q ss_pred eceEEEEEe
Q 001060 1101 AGRQVYIEE 1109 (1169)
Q Consensus 1101 ~g~~l~V~~ 1109 (1169)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=143.82 Aligned_cols=155 Identities=21% Similarity=0.160 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++++|+..|+++++ ++|.+...|..++..+...|++++|+..|++++...|.+.++|+.++.++...|+++
T Consensus 3 g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 567888889999988 688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYE 484 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~iy~ 484 (1169)
+|...|++++++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++..+ |++++|...|+
T Consensus 75 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 75 EAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRA-HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999987 889999999999999999999999999998 788999999999999999999 99999999999
Q ss_pred HHHHhhhC
Q 001060 485 QAIAIEKG 492 (1169)
Q Consensus 485 ~Al~~~~~ 492 (1169)
++++..|.
T Consensus 153 ~al~~~p~ 160 (568)
T 2vsy_A 153 AAVAQGVG 160 (568)
T ss_dssp HHHHHTCC
T ss_pred HHHhcCCc
Confidence 99999875
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=111.91 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=65.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeec--eEEEEEe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEE 1109 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~-afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~~ 1109 (1169)
..|||+||++.+|+++|+++|++||.|++|.| +. + .|| |||+|.+.++|.+|++. +|..|.| +.|+|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i-~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI-FK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEE-EE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE-Ee-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 56789999999999999999999999999865 32 2 276 99999999999999986 8999988 6899999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-11 Score=119.13 Aligned_cols=119 Identities=8% Similarity=0.016 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 162 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL 162 (1169)
++...|++++..+|.+.++|..++..+... |++++|..+|++++..+|.+..+|..++.++...|++++|++.|++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334568899999999999999999998884 699999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 163 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 163 ~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
...|.+...|+.++..+. ..|++++|+..|+++++..+.++
T Consensus 83 ~l~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCG
T ss_pred hcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 999999999999999998 89999999999999999877654
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=127.19 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEE-EECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4589999999999999999999999999999875 55667899999999999999999999986 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-10 Score=107.86 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
+.|..++..+...|++++++.+|++++...+.+...|..++.++...|++++|..+|++++... |....+|+.++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4688888888899999999999999999999999999999999999999999999999999987 788999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..|++++|+.+|+++ ++..|.+..+|..++.++.+.|++++|+.+|++++...|
T Consensus 81 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998 778999999999999999999999999999999998765
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-12 Score=133.56 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=70.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||+.+|+++|+++|++||.|..|+|. ++. +.++|||||+|.+.++|.+||+. +|..|+|+.|+|++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~-~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEee-ccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 3689999999999999999999999999998863 443 34789999999999999999976 9999999999999987
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-10 Score=127.40 Aligned_cols=203 Identities=13% Similarity=0.059 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhhc---cCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC------HHHHHHHHH
Q 001060 328 KEFDSKIIGFETAIR---RPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY------PEYWIRYVL 398 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~---r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~------~e~W~~~a~ 398 (1169)
++++++...++++.+ ..+|...+....-...+...+..+...|++++|+..|++++.+.+.. ..+|..++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555554443 12333222222223345555666778899999999999998886532 457888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh------HHHHHHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHA 467 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a 467 (1169)
++...|++++|+..|++|++++.. ....++..++.++.. |++++|+..|+++ +++.+.. ..++..++
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA-AAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHH
Confidence 888889999999999999887632 124577778888887 9999999999987 5554432 46788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 468 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 468 ~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.++.++|++++|+.+|++++.+.+...........+...+.+... .|++++|+..|++++ ..|..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999999998876432211122345555555544 788999999999999 88754
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=124.77 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=71.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|+.. +..++|+.|.|....
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI-MKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEEC-CCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 4689999999999999999999999999999874 56777899999999999999999999995 789999999998775
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-10 Score=120.83 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH---HHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE---YWIRY 396 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e---~W~~~ 396 (1169)
+...|...+++++|+..|+++|+. .|.++.....|..++..+.+.|++++|+..|++++...|.++. .|+.+
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 355678889999999999999982 3334444578999999999999999999999999999998864 78888
Q ss_pred HHHHHH------------------cCChHHHHHHHHHHHHHhhccChHHH-----------------HHHHHHHHHcCCH
Q 001060 397 VLCMEA------------------SGSMDLAHNALARATHVFVKRLPEIH-----------------LFAARFKEQNGDI 441 (1169)
Q Consensus 397 a~~l~~------------------~g~~e~A~~vl~rAl~~~~p~~~~l~-----------------~~~a~~~e~~g~~ 441 (1169)
+.++.. .|++++|+..|+++++.+ |+++.++ +.+|.++.+.|++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 877765 468999999999999988 7776555 5678889999999
Q ss_pred HHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 442 DGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 442 ~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++|+..|+++ ++..|++. ++++.++.++.++|++++|+..|++++...|.
T Consensus 164 ~~A~~~~~~~-l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGM-LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHH-HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHH-HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 9999999998 78888875 67999999999999999999999999887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-09 Score=116.45 Aligned_cols=230 Identities=6% Similarity=-0.060 Sum_probs=179.5
Q ss_pred HHcCChH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 367 ERDGDFN-KVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 367 ~~~gd~~-~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~----------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.|++. +|+.+++++|..+|.+..+|..-..++...+. +++++.+++.++..+ |++..+|.....++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3456655 89999999999999999999999998877654 678999999999988 89999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 436 EQNG--DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 436 e~~g--~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
...+ .+++++.++.++ ++++|.+..+|..+..+....|. ++++...++++|..++.+ ...|.+.+.++..
T Consensus 119 ~~l~~~~~~~EL~~~~k~-l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH
Confidence 9988 489999999998 78999999999999999999998 699999999999998643 5578777766665
Q ss_pred Hh-------------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh-CCCh-------hHHHHHHHHHHHHhhcCCCC
Q 001060 513 VS-------------RNAEKARQILVDSLDHVQLSKPLLEALIHFESI-QSSP-------KQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 513 ~~-------------g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~-~~~~-------~~~~~~r~l~eral~~~~~~ 571 (1169)
.. +.++++.+.+.+++..+|++...|.-...+... .+.. +.++....+++.++...|++
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 21 458999999999999999999999533333222 2211 23466677788888888765
Q ss_pred CCCCCHHHHHHHHHHHHH---HHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 572 PSTANAAEREELSCVFLE---FLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 572 ~~~l~~~~~~~i~~~~l~---fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
. . ++...+- .....|..+.+.....+..++-|-
T Consensus 272 ~--------w-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 K--------W-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp H--------H-HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred c--------h-HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2 1 1111111 222356777888888888887664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.8e-10 Score=106.99 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
++|+.++.++...|++++|..+|+++++.. +.+..+|..++.++...|++++|+.+|+++ .+..|.+..+|..++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHH-HHHCCCchHHHHHHHHHH
Confidence 578899999999999999999999999877 788999999999999999999999999998 778999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.+.|++++|+.+|++++...+. .+.++..++.++.. .|++++|+.+|+++++..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999998753 25678888888776 999999999999999988864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=112.15 Aligned_cols=121 Identities=10% Similarity=-0.029 Sum_probs=108.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001060 381 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 381 raL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
|+...+|...+.|...|..+.+.|++++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTC-IRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHH-HHhhhhhh
Confidence 4445678888999999999999999999999999999988 899999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
.+|+.++.++..+|++++|+..|++++++.|++ +.++..++.+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~ 124 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence 999999999999999999999999999998743 5566655543
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=123.82 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=71.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 478999999999999999999999999999875 55667899999999999999999999986 999999999999876
|
| >2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.9e-11 Score=109.91 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=67.8
Q ss_pred CceEEEEecCCC-----CCCHHHHHHHHhcCCCeeeeeEEeecCC-CcccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPS-----TVTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-----~~t~~~L~~~F~~~G~i~~~~i~~~~~~-~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+++.|+|+|+.. +-++++|+++|++||.|.+|.| ++++. +++++|||||+|.+.++|.+|+.. +|..|+||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i-~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVI-FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEE-EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEE-ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 468999999962 2378999999999999999876 34443 468899999999999999999976 999999999
Q ss_pred EEEEeccC
Q 001060 1105 VYIEERRP 1112 (1169)
Q Consensus 1105 l~V~~~r~ 1112 (1169)
|+|+++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998764
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.8e-11 Score=120.34 Aligned_cols=79 Identities=27% Similarity=0.306 Sum_probs=69.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++|+++|+++|++||.|.++.+ +++ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|+|..+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKI-MID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEE-ECC-CC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEE-EEC-CCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 58999999999999999999999999999765 334 3578999999999999999999955 99999999999999876
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
..
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=111.09 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=94.1
Q ss_pred CChhcHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDF------NKVVKLYERCLIACAN--------YPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~------~~a~~lyeraL~~~~~--------~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
..|.+++.|..|++.+++.|+. ++++..|+||+...|. |..+|++||.+.+ .++.++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 4677899999999999999999 9999999999998774 5679999998854 58999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.++ +++..+|+++|+|+.++|++++||+++.++ +.+.|...++
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~A-iG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKA-VERGAVPLEM 130 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCBCHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHH-hccCCCcHHH
Confidence 9986 888999999999999999999999999998 6677765444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=114.07 Aligned_cols=116 Identities=10% Similarity=0.048 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001060 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165 (1169)
Q Consensus 86 ~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 165 (1169)
..|.++++.+|.+.+.|..++..+... |++++|+.+|++++..+|.+..+|..++.++.+.|++++|+..|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 457888999999999999999998884 699999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 166 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 166 P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
|.+..+|+.++..+. ..|++++|+..|++++...+.++
T Consensus 83 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 83 INEPRFPFHAAECHL-QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999988 89999999999999999776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-09 Score=119.85 Aligned_cols=245 Identities=7% Similarity=-0.036 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
.++|..+.....+.+..++++.+++++|..+|.+..+|.....++...+ .+++++..+++++..+ |++..+|.....+
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444445455566679999999999999999999999999999988 5999999999999988 8999999999999
Q ss_pred HHHc-C-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 435 KEQN-G-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE--------DAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 435 ~e~~-g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e--------~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
+... + ++++++.+++++ ++++|.+..+|..+..+..+.+.++ ++...++++|+.++.+ ...|.
T Consensus 133 L~~l~~~~~~~EL~~~~k~-L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~ 205 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGS-LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWG 205 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHH-TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHHhcCCChHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 9887 7 899999999998 7899999999999999998888877 9999999999998643 45787
Q ss_pred HHHHHHHHHhCC-------HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChh-------------HHHH-HHHHHHH
Q 001060 505 QYSRFLHLVSRN-------AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK-------------QIDF-LEQLVDK 563 (1169)
Q Consensus 505 ~~a~~~~~~~g~-------~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~-------------~~~~-~r~l~er 563 (1169)
+...++.. .+. ++++.+.+++++..+|.+...|..+..+....+... .++. ...+.+.
T Consensus 206 ~R~~lL~~-l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVS-RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTT-STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHh-ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 77666555 555 799999999999999999999976555555444320 0100 1122222
Q ss_pred HhhcCCCC----CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 564 FLMSNSDS----PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 564 al~~~~~~----~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
++...... ...-+ .-++...++.....|+.+.+.++.++..+-.-+
T Consensus 285 ~~~~~~~~~~~~~~~~s----~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPV----PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp -CCCCC-CCCSSCCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhcccccccCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 32221111 00111 124555555555668888888888888655443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=115.20 Aligned_cols=114 Identities=14% Similarity=-0.021 Sum_probs=105.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 377 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 377 ~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
..|++++...|.+.+.|+.++..+...|++++|+..|++++.+. |+++.+|+.++.++...|++++|+..|+++ ++++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG-AVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcC
Confidence 46888999999999999999999999999999999999999987 889999999999999999999999999998 7889
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++..+|+.++.++..+|++++|+..|++++...|.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999998864
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-11 Score=127.30 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|...
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDM-SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4689999999999999999999999999999875 56677899999999999999999999985 899999999999876
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.15 E-value=8.7e-11 Score=124.13 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=67.8
Q ss_pred CceEEEEecCC-CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++|||+||| +.+|+++|+++|++||.|.+|+| +++ .+|||||+|.+.++|.+||+. +|..|.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF-MKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE-CTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE-ecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 89999999999999999999765 322 369999999999999999985 99999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=120.97 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||.++|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 46899999999999999999999999998752 56788999999999999999999986 999999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
|
| >1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.4e-11 Score=116.61 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=84.5
Q ss_pred CCcchhHhHHHHHHHHhhhhCcc-----ccc------cccc---CCceEEEEcCCcccch---hhHHHHHHHHhcCCCcc
Q 001060 718 AYPAQVGSYFVGQYYQVLQQQPD-----LVH------QFYS---DASSMIRVDGDSTESA---SSMLDIHSLVISLNFTA 780 (1169)
Q Consensus 718 ~~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY~---~~s~~~~~~g~~~~~~---~~~~~I~~~~~~l~~~~ 780 (1169)
.-+++.+..|++.||..|++.+. .|. ++|. ..++.+.|+|+.+... .+.+.|.+++..||.+.
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP~Sq 102 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSS 102 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEE
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCcccccccccccHHHHHHHHHhCCCcc
Confidence 46788999999999999998886 888 8883 3345666999988221 45667889999999999
Q ss_pred eeEeeeeccccCC-CceEEEEEEEEEecCccccceeEEEEEEEee
Q 001060 781 IEIKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824 (1169)
Q Consensus 781 ~~i~~~d~q~~~~-~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~ 824 (1169)
+.|+++|||+.++ +.+||+|.|.|++++. ..++|.|+|.|..+
T Consensus 103 HqL~SlDahpIpGq~T~lI~asGkVrFDes-gr~~fgQsf~Lta~ 146 (201)
T 1q42_A 103 HQLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGESADLFQE 146 (201)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCCC-----
T ss_pred eeeeeeecceeCCCcEEEEEEeEEEEECCC-CcCcCCCcEEEecc
Confidence 9999999999864 4689999999999987 68999999999865
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=112.65 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=86.2
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|.....|..++..+...|++++|+.+|++++...|.++.+|+.++.++...|++++|+..|++++.+. |+++.+|+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 6777777888887777778888888888888888888888888888888888888888888888888776 777788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
++.++...|++++|+..|+++ +++.|++...
T Consensus 92 lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~ 122 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSA-RALAAAQPAH 122 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHTCGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCcch
Confidence 888888888888888888876 5666655443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=127.49 Aligned_cols=207 Identities=11% Similarity=-0.041 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhcc-----------
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY-------LDFIERDGDFNKVVKLYERCLIACA----------- 387 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y-------l~~~~~~gd~~~a~~lyeraL~~~~----------- 387 (1169)
...++..|+..|.+++. ++|...+.|..+ +..+...+...+++..+.+.+...|
T Consensus 18 ~~~d~~~A~~~F~~a~~--------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN--------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHH--------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 36788999999999999 899999999999 6777777778888889999888544
Q ss_pred CC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 388 NY----------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 388 ~~----------~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
.+ .++++.|+..|...|++++|..+|+.++... |... .++..+.++.+.+++++|+..|+++ .. .|
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a-~~-~~ 165 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSA-GK-WP 165 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTG-GG-CS
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHh-hc-cC
Confidence 23 5788889999999999999999999988766 6666 8899999999999999999999987 44 33
Q ss_pred Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 458 GL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 458 ~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+. ..+++.++.++.++|++++|+..|++++.... .+...+..++.++..+.. .|+.++|+.+|++++...|+
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~---~P~~~~da~~~~glaL~~-lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA---GEACARAIAWYLAMARRS-QGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT---TTTTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSCC-
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC---CccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc-
Confidence 32 35899999999999999999999999985431 011146678888888877 99999999999999999999
Q ss_pred HHHHHHHHHhHhhCC
Q 001060 535 KPLLEALIHFESIQS 549 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~~ 549 (1169)
...+..+........
T Consensus 241 ~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 241 PKVAAALKDPSYRLK 255 (282)
T ss_dssp HHHHHHHHCTTCCCC
T ss_pred HHHHHHHhCCCCCCC
Confidence 988888877776654
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-11 Score=124.65 Aligned_cols=82 Identities=12% Similarity=0.270 Sum_probs=73.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++|+++|+++|++||.|.. +.+++..+|+++|||||+|.+.++|.+||+.++..|+|+.|+|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 35799999999999999999999999999876 3455667889999999999999999999988999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
.++.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=117.97 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=70.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
..++|||+|||..+++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. ++..|+| ++|+|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 3589999999999999999999999999999875 55666889999999999999999999985 8999987 899998
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 64
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=133.39 Aligned_cols=154 Identities=9% Similarity=0.001 Sum_probs=137.3
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---------------hHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---------------PEIHLFAA 432 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---------------~~l~~~~a 432 (1169)
..+++++++..|++++...|.....|..++.++...|++++|+..|++|+.+. |++ ..+|+.+|
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999899999999999999999999999999999999988 666 58999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
.++.+.|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|. .+.++..++.++..
T Consensus 204 ~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKA-LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------NKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
Confidence 9999999999999999998 8899999999999999999999999999999999999864 36688888888776
Q ss_pred HhCCHHHH-HHHHHHHhhh
Q 001060 513 VSRNAEKA-RQILVDSLDH 530 (1169)
Q Consensus 513 ~~g~~e~A-r~i~~kAl~~ 530 (1169)
.|++++| +.+|++.+..
T Consensus 277 -~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 277 -IRRQLAREKKLYANMFER 294 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 8888888 6778777654
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-10 Score=123.75 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
.++++|||+|||.++++++|+++|++||.|++|.|. .++ +|||||+|.+.++|.+||.. ++..|+ |+.|+|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~-~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe-cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 357899999999999999999999999999998653 222 58999999999999999986 899999 9999999
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 976
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-09 Score=108.96 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|...+..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++.+. |++..+|+.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46788888888899999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~--~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
...|++++|+.+|+++ ++++|.+..+| +..+..+.+.|++++|+.+++++.....
T Consensus 92 ~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9999999999999998 78899998888 4455557788999999999998877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=131.98 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=127.9
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---------------~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
+++.....|..++..+.+.|++++|+..|+++|..+|.+ ..+|+.++.++...|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677889999999999999999999999999999998 69999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA-FSLYEQAIAIE 490 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A-~~iy~~Al~~~ 490 (1169)
++++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++.++|+++++ +.+|++++...
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988 899999999999999999999999999998 889999999999999999999999888 66778777653
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=119.03 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeee---ceEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQV 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~~l 1105 (1169)
+.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+| +++|||||+|.+.++|.+|++. ++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINV-LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4589999999999999999999999999999875 5566665 8999999999999999999976 777665 5678
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
.|....+..
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 887766543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=129.74 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
....|...+..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++++. |++..+|+.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456788888888999999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
+...|++++|+..|+++ ++++|++...+...+....+. .+............+ ..+.+...+..++ .
T Consensus 82 ~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~i~~~l~~l~---~ 148 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRA-YSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERRIH------QESELHSYLTRLI---A 148 (281)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCC------CCCHHHHHHHHHH---H
T ss_pred HHHcCCHHHHHHHHHHH-HHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHh------hhHHHHHHHHHHH---H
Confidence 99999999999999998 677776522111111111111 111222222222221 2244655666552 6
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 515 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
|++++|++.|+++++..|++..+...+..+.... .+..+.++.+|+++...
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKH--DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH--HHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 7899999999999999999988777776655443 12356788899888664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=135.23 Aligned_cols=281 Identities=7% Similarity=0.026 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
++.+++.++++ ++.+.|..|+..+.+ .+++++|+.+|.++ .++..|...+..+...|++++|+..|+.
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~--~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQ--KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHH--cCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55566666555 233699999999888 46999999999874 3556788999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
+++..+ ++.+...++..+. ..|+.+++.++|+. . ....|...+......|+++.|+..|.++ .+
T Consensus 87 ark~~~-~~~i~~~Li~~Y~-Klg~l~e~e~f~~~------p---n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n 150 (449)
T 1b89_A 87 ARKKAR-ESYVETELIFALA-KTNRLAELEEFING------P---NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC------C-------------------CTTTHHHHHHHT-----TC
T ss_pred HHHhCc-cchhHHHHHHHHH-HhCCHHHHHHHHcC------C---cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh
Confidence 998643 3556655555555 57888888777752 1 2236777777777789999999999876 11
Q ss_pred HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001060 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 320 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~ 320 (1169)
...+
T Consensus 151 ~~~L---------------------------------------------------------------------------- 154 (449)
T 1b89_A 151 FGRL---------------------------------------------------------------------------- 154 (449)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
...+...+++++|+..|+++. +...|...+......|+++.|...... .-.+++--..++.++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~-------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN-------------STRTWKEVCFACVDGKEFRLAQMCGLH----IVVHADELEELINYY 217 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT-------------CHHHHHHHHHHHHHTTCHHHHHHTTTT----TTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC-------------CchhHHHHHHHHHHcCcHHHHHHHHHH----HHhCHhhHHHHHHHH
Confidence 123344455555666665552 245666666666666666666443332 123444444555666
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHc
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--GDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRL 473 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~--g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~ 473 (1169)
++.|.+++|+.+|+.++.+. +....+|..++.++.+. +++.++.++|... +.+.| .+..+|..++.++...
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~-ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666554 55566666666555443 3444455555443 33333 3444566666666666
Q ss_pred CCHHHHHHHHH
Q 001060 474 GNLEDAFSLYE 484 (1169)
Q Consensus 474 g~~e~A~~iy~ 484 (1169)
++++.|...+.
T Consensus 296 ~e~d~A~~tm~ 306 (449)
T 1b89_A 296 EEYDNAIITMM 306 (449)
T ss_dssp TCHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66666655443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-09 Score=119.49 Aligned_cols=231 Identities=9% Similarity=0.008 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccCCHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g-d~~~a~~lyeraL~~~~~~~e~W 393 (1169)
..+..+..+....+..++++..++++|. ++|....+|......+...+ ++++++.+++++|..+|.+..+|
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~--------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVR--------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 3444445555556666789999999999 89999999999999888888 59999999999999999999999
Q ss_pred HHHHHHHHHc-C-ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhhcCCChHHHH
Q 001060 394 IRYVLCMEAS-G-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--------GARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 394 ~~~a~~l~~~-g-~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~--------~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
.....++... + +.++++.++.++++++ |++..+|.....++...+.++ ++++.++++ ++++|.+..+|
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~-I~~dp~N~SAW 204 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM-LRVDGRNNSAW 204 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH-HHhCCCCHHHH
Confidence 9999999887 7 8899999999999988 899999999998888877777 899999998 78899999999
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH-------------------
Q 001060 464 IKHANMERRLGN-------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA------------------- 517 (1169)
Q Consensus 464 ~~~a~~e~r~g~-------~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~------------------- 517 (1169)
..++.+..+.+. ++++..+++++|...|.+ ..+|..+..++.. .|.-
T Consensus 205 ~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n------~SaW~Ylr~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN------VSAWNYLRGFLKH-FSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCCSGGGHHHHGGGTC------
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCCccccccccccccccccccc
Confidence 999999988886 789999999999998754 5578765555444 4432
Q ss_pred -HHHHHHHHHHhhhc------CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001060 518 -EKARQILVDSLDHV------QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565 (1169)
Q Consensus 518 -e~Ar~i~~kAl~~~------p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral 565 (1169)
..........+... +.+...+..++.+....++ .+.+..+|+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~---~~~a~~~~~~l~ 329 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR---VDDAAKVFEKLS 329 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 22222222222222 3566777777666665555 355677777754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=110.98 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=112.6
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH-HHHcCCH--HHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF-KEQNGDI--DGA 444 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~-~e~~g~~--~~A 444 (1169)
..|++++|+..|++++...|.+.++|+.++.++...|++++|+.+|++++++. |+++.+|+.++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45788899999999999999999999999999999999999999999999988 8899999999999 7789998 999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+.+|+++ ++++|++..+|+.++.++...|++++|+.+|++++...|..
T Consensus 101 ~~~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKA-LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHH-HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999998 78899999999999999999999999999999999998753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-09 Score=111.90 Aligned_cols=177 Identities=11% Similarity=-0.022 Sum_probs=148.1
Q ss_pred HHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----ChH
Q 001060 332 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG----SMD 407 (1169)
Q Consensus 332 ~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g----~~e 407 (1169)
+++..|+++++ ..+...+..++.++...+++++|+.+|++++.. .+++.++.++.++.. + +++
T Consensus 4 eA~~~~~~aa~----------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAE----------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHH----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHH----------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHH
Confidence 35556777765 245788999999998999999999999999865 689999999999887 6 899
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHHH----cCCHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVHTETSP--GLLEAIIKHANMERR----LGNLE 477 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~r----~g~~e 477 (1169)
+|+..|+++++ +.++..++.++.++.. .+++++|+..|+++ .+..+ ++..+++.++.++.. .++++
T Consensus 71 ~A~~~~~~A~~---~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 71 QARQLAEKAVE---AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA-ARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH-TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH-HHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999975 5789999999999987 88999999999998 66676 358999999999998 88999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHhhhcC
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~e~Ar~i~~kAl~~~p 532 (1169)
+|+..|+++++.. +. +..+..++.++..-.| ++++|+..|++|++.-.
T Consensus 147 ~A~~~~~~A~~~~-~~------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSLS-RT------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHTS-CT------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CC------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999882 11 3456677777655334 89999999999998743
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=116.92 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=69.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE--EEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ--VYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~--l~V~~ 1109 (1169)
.++|||+|||..+++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+. |+|.+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEE-EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 478999999999999999999999999999875 55667889999999999999999999986 899999975 77776
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=127.52 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=70.7
Q ss_pred CCceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1105 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l 1105 (1169)
.+.++|||+|||.++|+++|+ ++|++||.|.+|.| + .+|+++|||||+|.+.++|.+||+. ++..|.|+.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~-~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILV-S---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEE-c---CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 356899999999999999977 89999999999754 2 2678999999999999999999965 8999999999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|++++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999887644
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.6e-09 Score=118.49 Aligned_cols=200 Identities=13% Similarity=0.058 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 460 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 460 (1169)
++.+.+.++...|++++|...|.+++.+.... ...++..++.++...|++++|+..|+++ +++.+. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-l~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA-SVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-HHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHcCCHHHHH
Confidence 34444667778899999999999999987321 2457888899999999999999999998 444321 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH-----
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK----- 535 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~----- 535 (1169)
.++..++.++.+ |++++|+.+|++|+.+.+..........++..++.++.. .|++++|+..|+++++..+.+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 678899999988 999999999999999886532222234678888999877 9999999999999999876542
Q ss_pred -HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001060 536 -PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 603 (1169)
Q Consensus 536 -~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v 603 (1169)
..+...+......++ .+.+..+|++++ ..+.... . ....++...+... ..||.+....+
T Consensus 195 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~~~~--~--~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPGFSG--S--EDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTTSTT--S--HHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCCCCC--C--HHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 244555555555566 567899999999 7665432 1 1122344444433 35776665553
|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=123.76 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=67.4
Q ss_pred CCCceEEEEecCCCCC---------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1030 EGEVKSVYVRNLPSTV---------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~---------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
+.+.++|||+||+..+ ++++|+++|++||.|.+|.|. .++|||||+|.+.++|+.|++. ++..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-------~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-------ESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-------GGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-------CCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3467999999999998 799999999999999998753 2479999999999999999987 8888
Q ss_pred e------------eceEEEEEeccCCCC
Q 001060 1100 L------------AGRQVYIEERRPNTG 1115 (1169)
Q Consensus 1100 i------------~g~~l~V~~~r~~~~ 1115 (1169)
| .|+.|.|.+++..+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999987644
|
| >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.3e-10 Score=101.62 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=62.1
Q ss_pred ceEEEEecCC-------CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEE
Q 001060 1033 VKSVYVRNLP-------STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1105 (1169)
Q Consensus 1033 ~~~i~V~nlp-------~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l 1105 (1169)
.++|.|.-.. .++++++|+++|++||.|.+|.|. ++++|||||+|++.++|.+||+. ...+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 3566666543 468999999999999999997653 36789999999999999999997 455789999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|++++++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=105.30 Aligned_cols=105 Identities=11% Similarity=0.191 Sum_probs=89.2
Q ss_pred hCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhccCCC--------HHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 130 EFPLCYGYWKKYADHEARVGSM------DKVVEVYERAVQGVTYS--------VDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~------e~A~~l~eraL~~~P~s--------~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
..|++++.|..|++++.+.|+. ++.+++|+|++...|.+ +-||+.|+.|. ..+|+++||++|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHH
Confidence 4688888888888888888887 88888888888888764 68999999884 45899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 196 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
+++. ...| ..+|..|++||.++|+.++|++|+.+++...+.
T Consensus 86 a~~~-hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 86 ARAN-CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHH-CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHH-hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 9995 4444 899999999999999999999999999998443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-09 Score=102.63 Aligned_cols=114 Identities=10% Similarity=-0.062 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.|...+..+...|++++|+..|++++..+|.++.+|..++.++...|++++|+..|++++++. |++..+|+.+|.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777766 66777777777777
Q ss_pred HHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANMER 471 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e~ 471 (1169)
...|++++|+..|+++ ++++ |.+..++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~a-l~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH-HHhCcccCCchhHHHHHHHHHHHHH
Confidence 7777777777777776 5666 666666665555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-09 Score=109.53 Aligned_cols=122 Identities=10% Similarity=0.034 Sum_probs=112.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCH--HHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGSM--DKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~-e~~~~~~--e~A~ 155 (1169)
+.++.+++.|+++++.+|.+.++|..++..+... +++++|+.+|++++..+|.+..+|..++.+ +...|++ ++|+
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4467889999999999999999999999999885 599999999999999999999999999999 8899998 9999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
.+|++++...|.+..+|+.++.++. ..|++++|+..|++++...+.+
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999988 7899999999999999976654
|
| >2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=104.05 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=65.9
Q ss_pred CceEEEEecCCCCCC-----------HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1032 EVKSVYVRNLPSTVT-----------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t-----------~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
+.++|+|+||....+ +++|+++|++||.|.+|. +.++ .++|||||+|.+.++|.+||.. +|..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~--i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL--LFDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE--EETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE--EecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 568999999943332 589999999999999974 3443 3789999999999999999976 8999
Q ss_pred eeceEEEEEeccCCC
Q 001060 1100 LAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1100 i~g~~l~V~~~r~~~ 1114 (1169)
|+||.|+|+++.++.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999988754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=103.59 Aligned_cols=124 Identities=14% Similarity=0.017 Sum_probs=112.1
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
+..+.....|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+.+|++++++. |++..+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
.++.++...|++++|+..|+++ ++++|.+..+|..++.++.++|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKA-LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999998 78899999999998888877654
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=116.43 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---ceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~~l~V 1107 (1169)
..++|||+|||.++|+++|+++|++||.|.++.+ +++ .+|+++|||||+|.+.++|.+|++. +|..+. |+.|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI-LRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE-EEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 4579999999999999999999999999999875 444 4688999999999999999999976 887666 489999
Q ss_pred Eec
Q 001060 1108 EER 1110 (1169)
Q Consensus 1108 ~~~ 1110 (1169)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-09 Score=101.80 Aligned_cols=124 Identities=14% Similarity=0.014 Sum_probs=113.4
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
.++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+.+|++++... |++..+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 4566678889999988999999999999999999999999999999999999999999999999999987 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
++.++...|++++|+..|+++ +++.|++..+|..++.++.++|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKA-LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998 788999999999999998888764
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=126.40 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=70.9
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCC-CcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~-~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
..++|||+|||.. +|+++|+++|++||.|..|.| +++.. ||+++|||||+|.+.++|.+|+..+|..|+|+.|+|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINI-PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSL 287 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEEC-CSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEE-EecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEE
Confidence 4589999999999 999999999999999999765 33443 58999999999999999999994489999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 288 a~~k 291 (292)
T 2ghp_A 288 ADKK 291 (292)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9875
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=121.22 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeE----EeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i----~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
..++|||+|||+++|+++|+++|++||.|..+.+ .+.+...++++|||||+|.+.++|.+||..++..|+|+.|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 3589999999999999999999999954432100 112222356789999999999999999966999999999999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
...+...
T Consensus 83 ~~~~~~~ 89 (198)
T 2yh0_A 83 RRPHDYQ 89 (198)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9877653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-09 Score=101.54 Aligned_cols=119 Identities=12% Similarity=-0.038 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
..+.|...+..+...|++++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA-IEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCcHHHHHHHHH
Confidence 46789999999999999999999999999988 889999999999999999999999999998 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
++..+|++++|+..|++++.+.|.....+..+.++..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 99999999999999999999984322223345555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.5e-09 Score=110.12 Aligned_cols=136 Identities=10% Similarity=-0.010 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
++..+..+...|++++|+..|++++ +.++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHH
Confidence 5566777777888888888888875 236778888888888888888888888887 67788888888888988888
Q ss_pred cCCHHHHHHHHHHHHHhhhCCC----------ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 473 LGNLEDAFSLYEQAIAIEKGKE----------HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~~~----------~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.|++++|+..|++++...+.+. ..+..+.+|..++.++.. .|++++|+..|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999988776543 234456788899998887 999999999999999999976
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.1e-10 Score=119.15 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=68.4
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++|||+|||. ++++++|+++|++||.|.+|.| ++++ +|||||+|.+.++|.+||+. ++..|+|+.|+|.+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i-~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE-CCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-EECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 568999999999 9999999999999999999765 3332 68999999999999999974 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++...
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 88653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-09 Score=103.60 Aligned_cols=132 Identities=11% Similarity=-0.077 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
...|+..+..+...|++++|...|++++... |++..+|+.++.++...|++++|+..|+++ ++++|.+..+|+.++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRA-IELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHHHHHHH
Confidence 5689999999999999999999999999987 889999999999999999999999999998 78899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~--~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+...|++++|+.+|++++...|.+ +.++ ...+..+.. .|++++|..+++++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHD------KDAKMKYQECNKIVK-QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHH-HHHHHHHHHcccchHHH
Confidence 999999999999999999998642 4455 334433444 78899999998877653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-08 Score=112.10 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=140.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCMEASGSMDLAHNALARATHVFVKR----- 423 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e------~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~----- 423 (1169)
....|...+..+...|++++|+..|++++...+.... .++.++.++...|++++|+..|++++.+....
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666677778899999999999999988776543 34556677777889999999999999765221
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHT--ETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--~~~P~~----~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~ 497 (1169)
...++..+|.++...|++++|...|++++. +..++. ..+++.++.++..+|++++|..+|++++.+........
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 145888899999999999999999999831 335552 26899999999999999999999999999875433334
Q ss_pred chHHHHHHHHHHHHHHhCCHHHH-HHHHHHHhhh
Q 001060 498 TLPMLYAQYSRFLHLVSRNAEKA-RQILVDSLDH 530 (1169)
Q Consensus 498 ~~~~l~~~~a~~~~~~~g~~e~A-r~i~~kAl~~ 530 (1169)
....+|..++.++.. .|++++| ...|++|+.+
T Consensus 234 ~~~~~~~~lg~~y~~-~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRK-LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence 456788889988777 9999999 8889999864
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-10 Score=121.42 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++|+++|+++|++||.|..|.+ . +++|||||+|.+.++|.+|+.. ++..|+|+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-N------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-e------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 35689999999999999999999999999999764 2 3479999999999999999985 99999999999998
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 7653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=107.19 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=94.5
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
++.+...|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|+.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677788888888888888888888888888888888888888888888888888888888888877 7788888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
+.++...|++++|+..|+++ ++++|++...|+..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG-IEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHSSSCCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH-HHhCCCchHHHHHHHH
Confidence 88888888888888888887 6778887776655543
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-10 Score=116.99 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=67.4
Q ss_pred ceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+++|||+|||. ++++++|+++|++||.|.+|.+ ++++ +|||||+|.+.++|.+|+.. ++..|+|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i-~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEEC-STTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-EeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 48999999999 9999999999999999999764 3222 68999999999999999984 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=121.95 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=74.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFL-VYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEE-EeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 379999999999999999999999999999875 56777899999999999999999999955 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-08 Score=95.99 Aligned_cols=113 Identities=10% Similarity=0.009 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++++..|++++...|.+..+|..++.++...|++++|...|++++... |++..+|+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46688888888888999999999999999999999999999998888899999999999999877 77888999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
...|++++|+..|+++ +++.|++..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG-LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH-HHcCCCCHHHHHHHHHhh
Confidence 9999999999999987 788888888888877665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=112.45 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH-----HHH-HHHHHHHcCChHHHHHHHHHHHHHhhccC-----h
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-----WIR-YVLCMEASGSMDLAHNALARATHVFVKRL-----P 425 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~-----W~~-~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-----~ 425 (1169)
..+...+......|++++|+.+|++++...+..++. |+. ++.++...+++++|+..|++++.+..... .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 334444666678899999999999999988777662 443 66666677899999999999998653322 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHT------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~------~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
.++..+|.++...|++++|...|++++. ...+....++..++.++.++|++++|+.+|++++.+.+........
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 3788899999999999999999999842 2223345679999999999999999999999999988655444555
Q ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHhhhc
Q 001060 500 PMLYAQYSRFLHLVSR-NAEKARQILVDSLDHV 531 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g-~~e~Ar~i~~kAl~~~ 531 (1169)
..+|..++..+.. .| ++++|...|++|+.+.
T Consensus 236 ~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence 7789999998887 88 5799999999999753
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=121.85 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred CceEEEEecCCCCC-CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTV-TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~-t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..++|||+|||..+ |+++|+++|++||.|.++.| +++ .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQL-ACG-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEE-EEC-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEE-EEC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 45899999999995 99999999999999999875 333 3789999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 98764
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=112.24 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=64.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC----C-------CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i 1100 (1169)
+.++|||+|||.++|+++|+++|++| | .|.++. .++++|||||+|.+.++|.+|+..++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-------~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-------INQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-------EETTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-------ecCCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 45899999999999999999999999 5 454432 24568999999999999999996699999
Q ss_pred eceEEEEEeccCC
Q 001060 1101 AGRQVYIEERRPN 1113 (1169)
Q Consensus 1101 ~g~~l~V~~~r~~ 1113 (1169)
+|+.|+|...+..
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=113.23 Aligned_cols=132 Identities=9% Similarity=0.014 Sum_probs=112.9
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----------------EYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~----------------e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
+.....|...+..+...|++++|+.+|++++..+|.++ .+|..++.++...|++++|+..|+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44567788888888899999999999999999998887 89999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF-SLYEQA 486 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~-~iy~~A 486 (1169)
+++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..++..++.+...+++.+++. ..|.+.
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA-ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 889999999999999999999999999998 7889999999999999888887766655 344443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=94.84 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+.+|++++...|.+..+|..++.++...|++++|+.+|++++... |.+..+|+.++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 56788888888888899999999999998888888889888888888888999999998888876 77888888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 474 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 474 (1169)
...|++++|+..|+++ +++.|++..++..++.++.+.|
T Consensus 88 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA-LELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888998888887 6778888888888777765543
|
| >3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=101.21 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=65.1
Q ss_pred CceEEEEecC--CCCCC--------HHHHHHHHhcCCCeeeeeEEeecCCC--cccccEEEEEECCHHHHHHHHHh-CCC
Q 001060 1032 EVKSVYVRNL--PSTVT--------AFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPI 1098 (1169)
Q Consensus 1032 ~~~~i~V~nl--p~~~t--------~~~L~~~F~~~G~i~~~~i~~~~~~~--g~~~g~afV~F~~~~~a~~Ai~~-~~~ 1098 (1169)
+.+.|.+.|+ |.+.. +++|++.|++||.|.+|.| .+++.+ ++++|||||+|.+.++|.+|+.. ||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i-~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC-CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE-eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4588999998 43443 3689999999999999865 344433 36899999999999999999977 999
Q ss_pred eeeceEEEEEecc
Q 001060 1099 QLAGRQVYIEERR 1111 (1169)
Q Consensus 1099 ~i~g~~l~V~~~r 1111 (1169)
.++||.|+|++..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999998764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=107.49 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
+...+..+...|++++|+..|++++ ..++.+|+.++.++...|++++|+..|++++.+. |++..+|+.+|.++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 5556667778999999999999996 3478999999999999999999999999999987 88999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 439 GDIDGARAAYQLVHTETSPGLL----------------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~----------------~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++++|+..|+++ +++.|++. .+|+.++.++..+|++++|+..|++++...|.
T Consensus 85 ~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEA-LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHH-HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHH-HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999998 67666654 99999999999999999999999999999864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-09 Score=114.97 Aligned_cols=167 Identities=9% Similarity=-0.054 Sum_probs=130.8
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
|...+.|...+..+...|++++|+..|++++... |+++.+|+.+|.++...|++++|+..|+++ ++++|++..+|+.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCCHHHHHHH
Confidence 4567899999999999999999999999999987 889999999999999999999999999998 88999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
+.++..+|++++|+..|++++.+.|++..... ..++..+ + ..++...........+.+..+...+..|..
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSAL-----R----IAKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHHH-----H----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHH-----H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999875421111 1233222 1 223334444444567777777766666542
Q ss_pred hCCChhHHHHHHHHHHHHhhcCCC
Q 001060 547 IQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 547 ~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
.+.+.+...|++++...++
T Consensus 149 -----~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 149 -----AERERELEECQRNHEGHED 167 (281)
T ss_dssp -----HHHHHHHTTTSGGGTTTSC
T ss_pred -----HHHHHHHHHHHhhhccccc
Confidence 2245566777888776554
|
| >1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-10 Score=104.52 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred EecCCCCCCHHHHHHHH------------hcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1038 VRNLPSTVTAFEIEEEF------------QNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1038 V~nlp~~~t~~~L~~~F------------~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+.||+..+++++|+++| ++||.|.+|.| +++ .+|+++|||||+|.+.++|.+|+.. +|..++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i-~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEE-EeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777888888777776 99999999865 333 4578999999999999999999986 999999999
Q ss_pred EEEEec
Q 001060 1105 VYIEER 1110 (1169)
Q Consensus 1105 l~V~~~ 1110 (1169)
|+|++.
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999874
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=120.42 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||.++|+++|+++|++||.|..|.| +++.. + ++|||||+|.+.++|.+||+.++..|+|+.|.|..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEE-EECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 345799999999999999999999999999999875 34442 2 57999999999999999998799999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
...
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-09 Score=114.80 Aligned_cols=192 Identities=10% Similarity=-0.007 Sum_probs=157.7
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHHhhc------------------
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRY-------VLCMEASGSMDLAHNALARATHVFVK------------------ 422 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~-------a~~l~~~g~~e~A~~vl~rAl~~~~p------------------ 422 (1169)
..+|...|+..|.+++..+|...+.|+.+ +..|...+...++...+.+++.+.+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 47899999999999999999999999999 78888888888888899999885421
Q ss_pred --cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch-
Q 001060 423 --RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL- 499 (1169)
Q Consensus 423 --~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~- 499 (1169)
....+++.|+.++...|++++|+++|..+ ....|+.. .++.++.+..+.+++++|+..|+.++.... +.+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~-~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-----~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAA-PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-----KFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS-CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-----HHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-----cccH
Confidence 11468888999999999999999999997 67789888 999999999999999999999997765431 111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc--CC-CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001060 500 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--QL-SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~--p~-s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
..+++.++..+.. .|++++|+..|++++... |. ....+...+.....+|. .+.++.+|++++...|+
T Consensus 171 ~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence 2467788888776 999999999999998654 55 44566666666666666 56789999999998775
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-09 Score=118.25 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=69.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeee---ceEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLA---GRQVYI 1107 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~---g~~l~V 1107 (1169)
+++|||+|||..+|+++|+++|++||.|..|.|. .+ .+|+++|||||+|.+.++|.+||.. ++..+. |+.|.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV-VD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEee-eC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5789999999999999999999999999998764 44 5889999999999999999999987 355554 899999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
+.+.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9887643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-08 Score=121.14 Aligned_cols=171 Identities=7% Similarity=-0.047 Sum_probs=150.4
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC-
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNG- 439 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~----------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g- 439 (1169)
-.++|+.+|+++|..+|.+..+|...+.++...++ +++++..++++++.+ |++..+|...+.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34588999999999999999999999999998887 899999999999988 899999999999999999
Q ss_pred -CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH----
Q 001060 440 -DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---- 513 (1169)
Q Consensus 440 -~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---- 513 (1169)
+++++++.++++ ++++|.+..+|..++.+..+.| .++++.+.++++|+.++.+ ...|.+.+.++...
T Consensus 123 ~~~~~el~~~~k~-l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n------~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHH-HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC------ccHHHHHHHHHHhhcccc
Confidence 779999999998 8899999999999999999999 8999999999999998643 56887777766652
Q ss_pred ---------hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 514 ---------SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 514 ---------~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
.+.+++|.+.+.+|+..+|++...|..+..+....+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 155899999999999999999999966555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.1e-09 Score=99.15 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
..|...+..+.+.|++++|+..|++++...|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4577888888888999999999999999999999999999999888999999999999999877 788888888998888
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChH
Q 001060 437 QNGDIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
..|++++|+..|+++ ++++|++.
T Consensus 97 ~~g~~~~A~~~~~~a-l~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAW-LLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHH-HC------
T ss_pred HcCCHHHHHHHHHHH-HHhCcCCC
Confidence 888899999988887 67787654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=99.39 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|+.++.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 44444454444455555555555555555555555555555555555555555555555555444 44444444444444
Q ss_pred HHcCCHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLV 451 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a 451 (1169)
...|++++|+..|+++
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444444
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=114.48 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=59.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCe--eeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI--KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i--~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~ 1103 (1169)
++++|||+|||+++|+++|+++|++||.| +++++ +.++ |+.+|||||+|.+.++|.+||.. |+..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~-~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV-FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE-CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 45899999999999999999999999999 77654 3332 45679999999999999999986 89999987
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-08 Score=100.35 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=100.0
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
.++.+.+.|..++..+... +++++|+.+|++++..+|.+..+|..++.++.+.|++++|+..|+++|...|.+...|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMAR--KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3566788999999998884 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 174 HYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 174 ~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
.++..+. ..|++++|+..|++++...+.+
T Consensus 84 ~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 84 RLGLARF-DMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHH-HccCHHHHHHHHHHHHHhCCCc
Confidence 9999998 8999999999999999977664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-08 Score=103.26 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=126.8
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-----ccChHHHHHHHHHHHHcCCHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-----KRLPEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-----p~~~~l~~~~a~~~e~~g~~~ 442 (1169)
..|++++|+.+++.+.........+|..++.++...|++++|+..|++++.+.. +....++..++.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 468888988855555443336778999999999999999999999999998652 335678888999999999999
Q ss_pred HHHHHHHHHhhhc---CC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 443 GARAAYQLVHTET---SP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 443 ~A~~~~~~a~~~~---~P----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
+|+..|+++ +++ .+ ....++..++.++..+|++++|+.+|++++..............++..++.++.. .|
T Consensus 84 ~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g 161 (203)
T 3gw4_A 84 AARRCFLEE-RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ-EK 161 (203)
T ss_dssp HHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-Cc
Confidence 999999997 444 33 2355688999999999999999999999998765332222223456777888776 99
Q ss_pred CHHHHHHHHHHHhhhc
Q 001060 516 NAEKARQILVDSLDHV 531 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~ 531 (1169)
++++|+..|+++++..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=111.03 Aligned_cols=144 Identities=14% Similarity=-0.011 Sum_probs=115.3
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh----------------HHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----------------EIHLFAA 432 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~----------------~l~~~~a 432 (1169)
.|+++++...|+......+.....|...+..+...|++++|+.+|++++.+. |.++ .+|+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555554555566789999999999999999999999999987 6666 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
.++...|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|.+ +.++..++.++..
T Consensus 96 ~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKV-LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHH
Confidence 9999999999999999998 78899999999999999999999999999999999998642 5677777777655
Q ss_pred HhCCHHHHH
Q 001060 513 VSRNAEKAR 521 (1169)
Q Consensus 513 ~~g~~e~Ar 521 (1169)
.++.+++.
T Consensus 169 -~~~~~~~~ 176 (198)
T 2fbn_A 169 -LKEARKKD 176 (198)
T ss_dssp -HHHHHC--
T ss_pred -HHHHHHHH
Confidence 55555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-08 Score=96.58 Aligned_cols=122 Identities=9% Similarity=-0.007 Sum_probs=105.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 93 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 93 ~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
..+|.+...|..++..+... +++++|..+|++++..+|.+..+|..++.++...|++++|+..|++++...|.+...|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence 46788999999999999884 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDY--LSFPLWDKYIEYE 217 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~--~s~~lw~~y~~~e 217 (1169)
+.++..+. ..|++++|+..|++++...+.+. ....++..+....
T Consensus 81 ~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 81 FFLGQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999998 89999999999999998765422 1345555555533
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=97.61 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=104.5
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
..|.+..+|..++..+... +++++|..+|++++..+|.+..+|..++.++...+++++|+++|++++...|.+..+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQK--GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHT--TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 3567889999999998874 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 001060 174 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM 219 (1169)
Q Consensus 174 ~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~ 219 (1169)
.++..+. ..+++++|+..|++++...+. ...+|..+...+..
T Consensus 89 ~la~~~~-~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 89 RKAAALE-AMKDYTKAMDVYQKALDLDSS---CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHCGG---GTHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHH
Confidence 9999888 889999999999999986443 34556555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=95.91 Aligned_cols=122 Identities=11% Similarity=-0.015 Sum_probs=108.7
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
.+.....|+.++..+...|++++|...|++++... |++..+|+.++.++...|++++|+.+|+++ +++.|++..+|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERA-ICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHH-HhcCccCHHHHHH
Confidence 34567899999999999999999999999999987 788999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
++.++.+.|++++|+.+|++++...|. .+.++..++.++.. .|+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~-~~~ 129 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELK-LRE 129 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHH-Hhc
Confidence 999999999999999999999999763 25677777777665 554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=98.57 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=108.1
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
.++.....|...+..+...|++++|+.+|++++..+|.+ ..+|+.++.++...|++++|+..|++++.+. |++..+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346678899999999999999999999999999999987 8899999999999999999999999999987 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|+.++.++...|++++|+.+|+++ ++++|++..+|..+..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRC-VSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999998 78899999888887776543
|
| >3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-09 Score=99.72 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=65.8
Q ss_pred CceEEEEecCC--CCC---CHHHHHHHHhcCCCeeeeeEEeecCC----CcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1032 EVKSVYVRNLP--STV---TAFEIEEEFQNFGRIKPDGVFVRNRK----DVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1032 ~~~~i~V~nlp--~~~---t~~~L~~~F~~~G~i~~~~i~~~~~~----~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
+++.|+++|+- .++ -+++|++.|++||.|.+|.|.. ++. +++++||+||+|.+.++|.+|+.. ||..|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~-~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ-EKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEE-EEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEee-cCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 45899999983 222 3689999999999999987643 332 467889999999999999999987 999999
Q ss_pred ceEEEEEecc
Q 001060 1102 GRQVYIEERR 1111 (1169)
Q Consensus 1102 g~~l~V~~~r 1111 (1169)
||.|+|++..
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-09 Score=127.72 Aligned_cols=133 Identities=9% Similarity=0.068 Sum_probs=102.0
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---------------~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
.+.....|+.++..+.+.|++++|+..|+++|..+|.+ ..+|+.++.++.+.|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45566778888888888899999999999999888887 578888888888888888888888888
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS-LYEQA 486 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~-iy~~A 486 (1169)
+++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++.++++++++.. +|.++
T Consensus 344 l~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 344 LGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 777888888888888888888888888887 67788888888888888777777665543 34433
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-09 Score=113.47 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
++++|||+|||..+++++|+++|++|| .|..+.+ +.+ .+|||||+|.+.++|.+|+.. ++..|+ |+.|+|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i-~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE-SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE-EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 458999999999999999999999999 9999764 222 368999999999999999986 899999 9999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98763
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-09 Score=114.03 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
+.++|||+|||.++++++|+++|++|| .|..+.+ +.+ .+|||||+|.+.++|.+||.. ++..|+ |+.|+|.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE-CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE-EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 458999999999999999999999999 9999764 221 368999999999999999985 999999 9999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-08 Score=120.03 Aligned_cols=165 Identities=10% Similarity=0.000 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 330 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 330 ~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd----------~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
.++|+..++++|. ++|....+|..-...+...++ +++++..|+++|..+|.+..+|...+.+
T Consensus 45 ~eeal~~~~~~l~--------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 45 DESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp SHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4677999999999 899999999999888877777 8999999999999999999999999999
Q ss_pred HHHcC--ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---
Q 001060 400 MEASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--- 473 (1169)
Q Consensus 400 l~~~g--~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--- 473 (1169)
+...+ ++++++..++++++++ |++..+|...+.+....| .++++++.+.++ ++.+|.+..+|..++.+..++
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~-I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT-TTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHH-HHHCCCCccHHHHHHHHHHhhccc
Confidence 99999 6799999999999988 899999999999999999 899999999998 889999999999999998875
Q ss_pred -----------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 474 -----------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 474 -----------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
+.++++.+++.+||...|.+ ..+|..+..++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~------~saW~y~~~ll 236 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLL 236 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC------SHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCC------ccHHHHHHHHH
Confidence 55799999999999998754 45776654443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-08 Score=103.38 Aligned_cols=181 Identities=11% Similarity=-0.052 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG----DIDGARAAYQ 449 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g----~~~~A~~~~~ 449 (1169)
+|+.+|+++... .+++.++.++.++...+++++|+..|+++++ ..++..++.++.++.. + ++++|+..|+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 467789998865 7899999999999999999999999999987 4688999999999887 6 8999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHH
Q 001060 450 LVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQ 522 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~e~Ar~ 522 (1169)
++ . .+++..+++.++.++.. .+++++|+.+|+++++..+. ...+..+..++.++..- .+++++|+.
T Consensus 78 ~A-~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KA-V--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES----DAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HH-H--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS----HHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HH-H--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC----cchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 98 3 56789999999999987 78999999999999987631 02356777888776541 568999999
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhHh-hCC--ChhHHHHHHHHHHHHhhcC
Q 001060 523 ILVDSLDHVQLSKPLLEALIHFES-IQS--SPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 523 i~~kAl~~~p~s~~l~~~~a~~E~-~~~--~~~~~~~~r~l~eral~~~ 568 (1169)
.|++|++. +.+...+..+..+.. ..+ ...+.+.+..+|++++...
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999998 444434444444333 223 2334677888999988764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=94.94 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=99.1
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY--SVDI 171 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~l 171 (1169)
++|.+.+.|..++..+... +++++|..+|++++..+|.+..+|..++.++...|++++|+++|++++...|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA--GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 4788999999999998874 69999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHHHHHhcCC
Q 001060 172 WLHYCIFAINTY-GDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 172 w~~y~~~~~~~~-~~~e~Ar~~~erAl~~~g~ 202 (1169)
|..++..+. .. ++.++|++.|++++...+.
T Consensus 79 ~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 79 WAAKADALR-YIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHT-TCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHhhcccC
Confidence 999999988 89 9999999999999986654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=97.67 Aligned_cols=100 Identities=13% Similarity=-0.066 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
..|+..+..+...|++++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHA-RMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 358888999999999999999999999988 899999999999999999999999999998 889999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
.+.|++++|+..|++++...|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999998863
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-09 Score=126.47 Aligned_cols=152 Identities=9% Similarity=-0.007 Sum_probs=128.7
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---------------hHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---------------PEIHLFAA 432 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---------------~~l~~~~a 432 (1169)
..+++++++..|++++...+.+...|...+..+.+.|++++|+..|++|+++. |.+ ..+|+.++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 44566788888899998889999999999999999999999999999999988 666 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
.++.+.|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++|+++.|.+ ..++..++.++..
T Consensus 325 ~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKA-LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQISMCQKK 397 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999999999999999998 88999999999999999999999999999999999998643 4577777777665
Q ss_pred HhCCHHHHH-HHHHHHh
Q 001060 513 VSRNAEKAR-QILVDSL 528 (1169)
Q Consensus 513 ~~g~~e~Ar-~i~~kAl 528 (1169)
.+++++|. .+|++.+
T Consensus 398 -~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 -AKEHNERDRRIYANMF 413 (457)
T ss_dssp -HHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 66666554 4444444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=104.71 Aligned_cols=190 Identities=9% Similarity=0.027 Sum_probs=146.0
Q ss_pred HHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCChHHHH
Q 001060 333 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA--NYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 333 ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~--~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++..|++.+.. .+.....+..++..+...|++++|+.++.++|...+ .+.+++...+.++.+.|+.+.|+
T Consensus 85 a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 67778888762 223344556677788889999999999999998886 89999999999999999999999
Q ss_pred HHHHHHHHHhhc------cChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHH
Q 001060 411 NALARATHVFVK------RLPEIHLFAARFKEQNG--DIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 411 ~vl~rAl~~~~p------~~~~l~~~~a~~~e~~g--~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~ 480 (1169)
+.+++..+.. | +...+.+.-+.+....| ++.+|..+|+++ .+..|+ ...+++. ++.++|++++|.
T Consensus 157 k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El-~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 157 TIFDNYTNAI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL-SQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH-HTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred HHHHHHHhcC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 9999988776 4 33334444343344444 999999999997 677787 2333333 788999999999
Q ss_pred HHHHHHHHhhhCC--C--ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 481 SLYEQAIAIEKGK--E--HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 481 ~iy~~Al~~~~~~--~--~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.+++.+++..|.- . ..+..+.++.+.+.+.+. .|+ +|.+++.++.+..|+++.+.
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-QGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-hCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999888765320 0 013457888888777776 786 89999999999999998766
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-08 Score=89.97 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
.|+..+..+...|++++|..+|+++ +...|.+..+|..++.++.+.|++++|..+|++++...|. .+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~ 78 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEA-IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHHHHHHH
Confidence 4444444444555555555555554 3445555555555555555555555555555555554432 13344455
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 543 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~ 543 (1169)
+.++.. .|++++|+..|+++++..|++..++..+..
T Consensus 79 a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 79 AAALEF-LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 544443 555555555555555555555554444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.4e-08 Score=90.17 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=99.4
Q ss_pred hCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 94 ANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 94 ~nP~d-~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
.+|.+ ...|..++..+... +++++|..+|++++..+|.+...|..++.++.+.|++++|+.+|++++...|.+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 35655 78999999988874 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
..++..+. ..+++++|+..|++++...+. ...++..+..
T Consensus 81 ~~la~~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 119 (125)
T 1na0_A 81 YNLGNAYY-KQGDYDEAIEYYQKALELDPN---NAEAKQNLGN 119 (125)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence 99999888 789999999999999996544 4444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=97.91 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-------YPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVK 422 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~-------~~e-----~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p 422 (1169)
....|...+..+.+.|++++|+..|+++|..+|. +.. +|...+.++...|++++|+..|++|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 3556666666666667777777777777777666 222 5555555555555555555555555442
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 423 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI----IKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 423 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~----~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
|+++ .+++|++..+| ++++..+..+|++++|+..|++|+++.|++
T Consensus 87 -------------------------~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 87 -------------------------FNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp -------------------------HHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------hhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 2333 35599999999 999999999999999999999999999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-08 Score=93.96 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPML 502 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~-~~~~~l 502 (1169)
....|..+|..+.+.|++++|+..|+++ ++++|++..+|..++.++.++|++++|+..|+++|++.|..... .....+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~A-l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKA-IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4456677888999999999999999998 78999999999999999999999999999999999988753211 112346
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 503 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 503 ~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
|..++.++.. .|++++|++.|+++|+..|+ ..+...+..+
T Consensus 86 ~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 86 MSRAGNAFQK-QNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 7778888776 99999999999999998875 4444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=92.98 Aligned_cols=117 Identities=19% Similarity=0.045 Sum_probs=79.9
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~ 498 (1169)
+.....|+..+..+...|++++|..+|+++ +++.|++ ..+|+.++.++...|++++|+.+|++++...+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQA-LGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 345566666666666677777777777776 5666665 666777777777777777777777777776542
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
.+.+|..++.++.. .|++++|+.+|+++++..|++..++..+..+..
T Consensus 98 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 DVKALYRRSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 25566666766665 777777777777777777777777766665544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-08 Score=92.49 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC-------hHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL-------PEI 427 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-------~~l 427 (1169)
....|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|..+|++++.+. |+. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 356788888888889999999999999999999999999999999988999999999999999887 555 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|+.++.++...|++++|+..|+++ +++.| +..++..+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKS-LAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-HHhCC-CHHHHHHHHHHHHH
Confidence 888888888888888888888887 56677 46666666555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-08 Score=99.35 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIA------------------CANYPEYWIRYVLCMEASGSMDLAHNALARAT 417 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~------------------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl 417 (1169)
...|...+..+.+.|++++|+..|+++|.. .|.+..+|..++.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 466888888888899999999999999988 55666777777777777777777777777777
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHH
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANM 469 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~ 469 (1169)
++. |++..+|+.+|.++...|++++|+..|+++ ++++|++. .++..+..+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCGGGHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH-HhcCCCCHHHHHHHHHHH
Confidence 765 677777777777777777777777777776 66677766 344443333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-08 Score=92.64 Aligned_cols=100 Identities=9% Similarity=-0.008 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh-------HHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-------EIH 428 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~-------~l~ 428 (1169)
...|+.++..+.+.|++++|+..|+++|..+|.+..+|..++.++...|++++|+..|++++++. |+.. .+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHH
Confidence 35688888888889999999999999999999999999999999999999999999999999887 4432 355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
..+|.++...|++++|+..|+++ ++..|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~ka-l~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRS-LSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhhCc
Confidence 55566666666666666666665 34444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=90.98 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFA 431 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~ 431 (1169)
.+...+..+...|++++|+..|++++...|.++ ++|+.++.++...|++++|+..|++++... |++ +.+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 355666666778888888888888888888777 788888888888888888888888888876 666 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
|.++...|++++|+..|+++ ++..|++..++.....+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV-ATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHHH
Confidence 88888888888888888887 6677877766655555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-08 Score=91.15 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAAR 433 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~ 433 (1169)
...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+.+|+++++.. |+ ...+|+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34444455544455555555555555555555555555555555555555555555555555443 44 4445555555
Q ss_pred HHHHc-CCHHHHHHHHHHH
Q 001060 434 FKEQN-GDIDGARAAYQLV 451 (1169)
Q Consensus 434 ~~e~~-g~~~~A~~~~~~a 451 (1169)
++... |++++|+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 55555 5555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.1e-09 Score=119.27 Aligned_cols=157 Identities=10% Similarity=0.067 Sum_probs=76.8
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
.....|+..+..+.+.|++++|+..|+++|..++.+.. +...++++++...+ ...+|+.++.
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 34455666666666667777777777777776665431 11112222222111 1136777788
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 513 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~ 513 (1169)
++.+.|++++|+..|+++ ++++|++..+|++++.++..+|++++|+..|++++.+.|.+ +.++..++.+....
T Consensus 239 ~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIV-LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQE 311 (338)
T ss_dssp HHHTTTCCHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHH
Confidence 888888888888888887 67788888888888888888888888888888888776532 44555666554444
Q ss_pred hCCHHHHHHHHHHHhhhcCCCH
Q 001060 514 SRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 514 ~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
.+..++++.+|++++...|.+.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCC
Confidence 5667778888888887777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-07 Score=101.52 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=150.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-ccChHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-KRLPEIHLFAAR 433 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-p~~~~l~~~~a~ 433 (1169)
.......|+.|.. ++ ++..+++.+...+.....++.++.++...|++++|+.++.+++...+ ....+++...+.
T Consensus 70 ~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 70 LGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp THHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 3445666777763 22 77888888876556677788999999999999999999999987552 267899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~~e~r~g--~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~ 505 (1169)
++.+.|+.+.|++++++. .+.+|+ ...+.+.-+.+....| ++.+|..+|+++++..|+ ...+.++..
T Consensus 145 i~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln 219 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN 219 (310)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH
Confidence 999999999999999997 677882 3333333343344445 899999999998877642 011223222
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhh----------cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 506 YSRFLHLVSRNAEKARQILVDSLDH----------VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 506 ~a~~~~~~~g~~e~Ar~i~~kAl~~----------~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
... ..|++++|.++++.+++. .|+++..+.+.+.+...+|. .+.++++++....|+.+
T Consensus 220 ---~~~-~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 220 ---LHL-QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp ---HHH-HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred ---HHH-HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 333 499999999999988876 48899999888888887775 25678888888888877
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-08 Score=99.31 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----------------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVF-----------------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-----------------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
...|...|..+...|++++|+..|.+++.+. .|....+|+.+|.++.+.|++++|+..|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a- 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV- 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-
Confidence 4678889999999999999999999999982 2567789999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 453 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++++|++..+|+.++.++..+|++++|+..|++++.+.|.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999999999999999864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=92.92 Aligned_cols=140 Identities=11% Similarity=-0.080 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 460 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 460 (1169)
+|..++.++...|++++|+..|++++.+..... ..++..++.++...|++++|+..|+++ +++.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhCCcHHHH
Confidence 444555555555555555555555555442111 124555555555566666666666554 222111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
.++..++.++...|++++|+.+|++++..............++..++.++.. .|++++|+..|+++++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888887754322222334556777777666 88999999999998876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=116.48 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+|+.++.++...|++++|+..|++++++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a-l~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA-QKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT-TC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Confidence 589999999999999999999999999987 899999999999999999999999999998 889999999999988884
Q ss_pred -HHcCCHHHHHHHHHHHHHhhhC
Q 001060 471 -RRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 471 -~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
...+..++++.+|.+++...|.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 4456778899999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=122.94 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
.|..++..+.+.|++++|+..|++++...|.+..+|..++.++...|++++|+..|++|+++. |++..+|+.+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455555678999999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhhhC
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANM--ERRLGNLEDAFSLYE-----------QAIAIEKG 492 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~--e~r~g~~e~A~~iy~-----------~Al~~~~~ 492 (1169)
.|++++|+..|+++ +++.|++..+|..++.+ +.++|++++|+.+|+ +++...+.
T Consensus 87 ~g~~~eA~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHH-HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999998 78899999998888887 788899999999999 77776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=97.96 Aligned_cols=173 Identities=11% Similarity=-0.004 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh--
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-- 459 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-- 459 (1169)
.....|...+..+...|++++|...+.++++.. +... ..++.++.++...|++++|...|+++ +++.+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~ 150 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-LNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH-HTTCCCSSC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCc
Confidence 344566677777888999999999999999865 3332 34555777888899999999999998 4433322
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 460 ----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 460 ----~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
..+|..++.++...|++++|..+|++|+........... ...++.+++.++.. .|++++|...|+++++..+..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999965432111111 12578888888777 999999999999999876321
Q ss_pred ------HHHHHHHHHhHhhCCChhHHHHH-HHHHHHHhh
Q 001060 535 ------KPLLEALIHFESIQSSPKQIDFL-EQLVDKFLM 566 (1169)
Q Consensus 535 ------~~l~~~~a~~E~~~~~~~~~~~~-r~l~eral~ 566 (1169)
..++...+......++. +.+ ..+|++++.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~---~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYE---EAEIEDAYKKASF 265 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 45555666666666653 223 555666544
|
| >3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=112.39 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCCceEEEEec--CCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---ce
Q 001060 1030 EGEVKSVYVRN--LPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GR 1103 (1169)
Q Consensus 1030 ~~~~~~i~V~n--lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~ 1103 (1169)
..+..+|||+| |++.+|+++|+++|++||.|++|. +. . +||||||+|++.++|++||+. ||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~--~~-~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--MP-P----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEE--CC-T----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEE--Ee-C----CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 34668999999 578999999999999999999854 32 1 579999999999999999987 898884 44
Q ss_pred --EEEEEec
Q 001060 1104 --QVYIEER 1110 (1169)
Q Consensus 1104 --~l~V~~~ 1110 (1169)
.|.|.+.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4666655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.3e-08 Score=96.52 Aligned_cols=74 Identities=8% Similarity=0.089 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-------ccCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIA-------CANYPEYW----IRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~-------~~~~~e~W----~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
.|.+.+..+.+.|++++|+..|++||.. +|.+...| ++.+..|...|++++|+..|++|+++. |++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 8999999999999999999999999999 99999999 999999999999999999999999988 66665
Q ss_pred HHHHHH
Q 001060 427 IHLFAA 432 (1169)
Q Consensus 427 l~~~~a 432 (1169)
+.-.+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=97.85 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------ccCCHHHHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA------CANYPEYWIRYVLCM 400 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~------~~~~~e~W~~~a~~l 400 (1169)
.+++++++..++.... ........|..++..+...|++++++..|++++.. .+....+|..++.++
T Consensus 5 ~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 5 AHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp --CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4566666664433322 12245778888999999999999999999999994 344567899999999
Q ss_pred HHcCChHHHHHHHHHHHHHhh--c----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---CC---hHHHHHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFV--K----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS---PG---LLEAIIKHAN 468 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~--p----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~---P~---~~~~~~~~a~ 468 (1169)
...|++++|+..|++++.+.. + ....++..++.++...|++++|+..|+++ +++. .+ ...++..++.
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS-LVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHhccchHHHHHHHHHHHH
Confidence 999999999999999999842 1 23456888899999999999999999997 3221 11 1234688899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++...|++++|+.+|++++.+...
T Consensus 156 ~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-07 Score=101.63 Aligned_cols=164 Identities=9% Similarity=0.028 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhccCC------HHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHN-YLDFIERDGDFNKVVKLYERCLIACANY------PEY 392 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~-yl~~~~~~gd~~~a~~lyeraL~~~~~~------~e~ 392 (1169)
..+...+++++++..|+++++. .+..+. ..-.|.. ++.++...+++++|+..|+++|...... ..+
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4566778999999999999872 122222 1233554 5566677789999999999999864332 337
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhh------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFV------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLL 460 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~ 460 (1169)
+..++.++...|++++|...|+++++... +....+++.+|.++.+.|++++|+..|+++ +++. ....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-l~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-IEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHcCcHHHHH
Confidence 89999999999999999999999997542 223458889999999999999999999998 4443 2347
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhh
Q 001060 461 EAIIKHANMERRLGN-LEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~ 491 (1169)
.+|+.++.++.++|+ +++|...|++|+.+..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 889999999999994 7999999999999764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-07 Score=87.70 Aligned_cols=110 Identities=14% Similarity=-0.036 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
++..|..+...|++++|...|+++ ++..|++. .+|+.++.++.+.|++++|+..|++++...|.. ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSF-LELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHHHHH
Confidence 334444445555555555555554 44445444 455555555555555555555555555554321 11234444
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 542 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a 542 (1169)
.++.+++. .|++++|+..|+++++..|++........
T Consensus 81 ~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 81 KLGLSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 55555444 55555555555555555555554444333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=94.36 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ--------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-- 149 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~--------~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-- 149 (1169)
.++.+++.+++++++||.|.++|..++..+..+++ +.+++|+..|+++|+++|++..+|..++..+..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 35678899999999999999999999998887641 13679999999999999999999999999999875
Q ss_pred ---------CHHHHHHHHHHHHhccCCCHHHHHH
Q 001060 150 ---------SMDKVVEVYERAVQGVTYSVDIWLH 174 (1169)
Q Consensus 150 ---------~~e~A~~l~eraL~~~P~s~~lw~~ 174 (1169)
++++|++.|+|+|.+.|.+...|..
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999999999988655433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=109.54 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLI----------------ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~----------------~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
..|..++..+.+.|++++|+..|+++|. ..+.+..+|..++.++.+.|++++|+..|++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577778888889999999999999998 444555666666666666666666666666666655
Q ss_pred hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 421 VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 421 ~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
|++..+|+.+|.++...|++++|+..|+++ ++++|++..++..++.++..+++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A-l~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666 556666666666666665555554444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-07 Score=88.05 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 170 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 170 (1169)
..+.|..++..+... +++++|..+|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+ ..
T Consensus 3 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 457899999988874 699999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 216 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~ 216 (1169)
+|+.++..+. ..+++++|+..|++++...+ +..++..+...
T Consensus 81 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~----~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYF-KEEKYKDAIHFYNKSLAEHR----TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC----CHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHhCC----CHHHHHHHHHH
Confidence 9999999888 78999999999999999543 24455444443
|
| >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.2e-08 Score=84.32 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=60.6
Q ss_pred CceEEEEecCCC----CCCH----HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeece
Q 001060 1032 EVKSVYVRNLPS----TVTA----FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGR 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~----~~t~----~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~ 1103 (1169)
+..+|+|.-++. +.-+ .+|.+.|++||.|..+++ +. +.+||+|.+.++|.+||+++|..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~-~~--------d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRF-VE--------DKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEE-CS--------SSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEE-ec--------CCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 346788887762 2323 678999999999998765 32 238999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 001060 1104 QVYIEERRPNTG 1115 (1169)
Q Consensus 1104 ~l~V~~~r~~~~ 1115 (1169)
.|+|..+++...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999998643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=118.39 Aligned_cols=134 Identities=11% Similarity=-0.031 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
+.|..++..+...|++++|+..|++|+++. |++..+|..+|.++.+.|++++|+..|+++ ++++|++..+|+.++.++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRA-IELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 345566667778899999999999999987 889999999999999999999999999998 889999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH--HHHHhCCHHHHHHHHH-----------HHhhhcCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF--LHLVSRNAEKARQILV-----------DSLDHVQL 533 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~--~~~~~g~~e~Ar~i~~-----------kAl~~~p~ 533 (1169)
..+|++++|+..|+++++..|.. +.++..++.. +.. .|++++|.++++ ++++..|+
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHD------KDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTC------TTHHHHHHHHHHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHH-HHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999998653 2355555544 454 788999999999 77766554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-08 Score=93.10 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=70.9
Q ss_pred cCChHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 369 DGDFNKVVKLYERCLIA---CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~---~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
.|++++|+..|+++|.. +|.+..+|+.++.++...|++++|+.+|++++++. |+++.+++.++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777788888888887 57777888888888888888888888888888877 777888888888888888888888
Q ss_pred HHHHHHhhhcCCChHHHH
Q 001060 446 AAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~ 463 (1169)
..|+++ ++..|++..+.
T Consensus 82 ~~~~~a-l~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKI-IAETSDDETIQ 98 (117)
T ss_dssp HHHHHH-HHHHCCCHHHH
T ss_pred HHHHHH-HHhCCCcHHHH
Confidence 888887 56677766543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=90.47 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=82.9
Q ss_pred CCCchHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001060 79 PAMSGEEDRLWNIVKA---NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~---nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 155 (1169)
+.++.++..|+++|+. +|.+..+|..|+..+... |++++|+.+|++++..+|++..+|..++..+.+.|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4567889999999999 699999999999999885 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHH
Q 001060 156 EVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw 172 (1169)
..|+++|...|.+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999999888765
|
| >3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=89.42 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=60.2
Q ss_pred CceEEEEecCCCCC----------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001060 1032 EVKSVYVRNLPSTV----------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~----------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
+.+.|.++|+=..- -+++|++.|++||.|.+|.| . +.+ ++|||||+|.+.++|.+|+.. ||..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~--~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-D--KNS--AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-C--TTC--TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-e--cCC--CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34788899983211 13588999999999999754 2 222 589999999999999999976 99999
Q ss_pred eceEEEEEecc
Q 001060 1101 AGRQVYIEERR 1111 (1169)
Q Consensus 1101 ~g~~l~V~~~r 1111 (1169)
+||.|+|++..
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-07 Score=104.92 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------------hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHV---------------FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 454 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~---------------~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 454 (1169)
...|..++..+.+.|++++|+..|++|+++ ..+....+|+.+|.++.+.|++++|+..|+++ ++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a-l~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA-LE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-HH
Confidence 356889999999999999999999999983 22567889999999999999999999999998 78
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001060 455 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 522 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~ 522 (1169)
++|++..+|+.++.++.++|++++|+..|++|+++.|.+ +.++..++.++.. .++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~-~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQK-IKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999998642 5677777777665 665665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-07 Score=88.83 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----C
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----L 424 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~ 424 (1169)
...|..++..+...|++++++..|++++...+... .+|..++.++...|++++|...|++++.+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677888888899999999999999998876432 488899999999999999999999999877321 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..++..++.++...|++++|+..|+++ +++. +....++..++.++...|++++|+.+|++++.+..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999997 3331 22345688899999999999999999999998763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.2e-07 Score=84.00 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=75.9
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
|..+++.|+++++.+|.+..+|..|+..+... |++++|+.+|++++..+|.+...|..++.++...|++++|+..|++
T Consensus 1 ~~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678889999999999999999999998874 5999999999999999999999999999999999999999999999
Q ss_pred HHhccCC
Q 001060 161 AVQGVTY 167 (1169)
Q Consensus 161 aL~~~P~ 167 (1169)
++...|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 9988763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=92.84 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=75.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM----------DLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~----------e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
.+.+.+++|+..|++++..+|.+++.|+.++.++...+++ ++|+..|++|+++. |+...+|+.++..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999887654 58888888888877 788888888888887
Q ss_pred HcC-----------CHHHHHHHHHHHhhhcCCChH
Q 001060 437 QNG-----------DIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 437 ~~g-----------~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
..| ++++|..+|+++ ++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kA-l~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQA-VDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHH-HHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHH-HHhCCCCH
Confidence 664 788888888887 67788753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=102.31 Aligned_cols=208 Identities=9% Similarity=0.031 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCC------CC---hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH--
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKP------LS---VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE-- 391 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~p------l~---~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e-- 391 (1169)
.+.+.+++++|+..|..+++..--.... .. .........++..+...|++++++.+|.+++...+....
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3456789999999999998731100000 00 111234677888889999999999999999988665433
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CC
Q 001060 392 ----YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SP 457 (1169)
Q Consensus 392 ----~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-----~P 457 (1169)
+...++.++...|+++.|..++++++.+.... ...++..+|.++...|++++|..++++++... .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 33344455555789999999999999876322 25688899999999999999999999874321 34
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 458 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 458 ~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
....+++..+.++...|++++|+.+|++++...+...+.+. ...++...+.+.. ..+++++|...|.++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC-EDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999987654322211 2234555555544 4899999999999999853
|
| >1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=87.47 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=62.7
Q ss_pred CCCCceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECC-HHHHHHHHHh---CCCeeece
Q 001060 1029 DEGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED-ISGVQNAIQA---SPIQLAGR 1103 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~-~~~a~~Ai~~---~~~~i~g~ 1103 (1169)
.-..|..|||+||+.+ ++.++|+++|++||.|+.|++ ++++ ..|||.|.+ ..+|..|+.. .+.+|.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3457899999999999 999999999999999999875 3333 269999999 7889988876 38999999
Q ss_pred EEEEEe
Q 001060 1104 QVYIEE 1109 (1169)
Q Consensus 1104 ~l~V~~ 1109 (1169)
.++++.
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 888864
|
| >1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=90.32 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=65.4
Q ss_pred chhHhHHHHHHHHhhhhCc-----ccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccC-CC
Q 001060 721 AQVGSYFVGQYYQVLQQQP-----DLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW-NG 794 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~-~~ 794 (1169)
.+.+..||+.||..|+..+ ..|..|+...+ -+.++|+.+-....-++| ...+++.+.++|+++|||-.. .+
T Consensus 16 ~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~-~Ii~NG~p~a~p~~fqei--w~~Q~p~T~hel~S~D~HVIngsg 92 (184)
T 1of5_B 16 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNC-RIIFNATPFAQATVFLQM--WQNQVVQTQHALTGVDYHAIPGSG 92 (184)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-C-CEEETTEEESCHHHHHHH--HHHHSCCCEEEEEEEEEEEETTTT
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCc-eEEECCeEcCCHHHHHHH--HHhcCCCceEEEEeEEEEEECCCC
Confidence 4678999999999999977 77888876644 445899887555444333 334888888999999999854 45
Q ss_pred ceEEEEEEEEEecCccccceeEEEEEEEee
Q 001060 795 GVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824 (1169)
Q Consensus 795 ~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~ 824 (1169)
+|+|+|+|.+.+++. ..-+|.|+|+|.|.
T Consensus 93 sivv~VsgkVRFdEs-grd~fgEtfvLvpn 121 (184)
T 1of5_B 93 TLICNVNCKVRFDES-GRDKMGQDATVPIQ 121 (184)
T ss_dssp EEEEEEEEEEECC-----------------
T ss_pred eEEEEEEEEEEECCC-CCCCCCCeEEECCC
Confidence 799999999999865 33589999999976
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-05 Score=92.34 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=145.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh----
Q 001060 367 ERDGDFNKVVKLYERCLIACANYP-----------------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---- 425 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~-----------------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~---- 425 (1169)
.+.|++++|+..|.+++...+... .....++.++...|++++|.+.|.+++.+. +...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHH
Confidence 467899999999999998876543 357889999999999999999999999876 3322
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001060 426 --EIHLFAARFKEQNGDIDGARAAYQLVHT-----ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 426 --~l~~~~a~~~e~~g~~~~A~~~~~~a~~-----~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~ 498 (1169)
.+...++.+....|+++.|..+|+++.. ...+....++..++.++...|++++|..++++++.......+.+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 3444566677778999999999998621 123445678999999999999999999999999987665444455
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc---CCCH----HHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV---QLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~---p~s~----~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
...++...++++.. .|++++|+.+|++++... ++.. .++.....+....++ .+.+..+|..++.
T Consensus 174 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD---YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 56778888888776 999999999999999864 3333 233344444444444 4445555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=82.79 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
.++..|++++...|.++.+|+.++.++...|++++|+..|++++.+. |++..+|+.++.++...|++++|+..|+++ +
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG-L 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 46677888888888888888888888888888888888888888776 677888888888888888888888888877 4
Q ss_pred hcCC
Q 001060 454 ETSP 457 (1169)
Q Consensus 454 ~~~P 457 (1169)
++.|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5444
|
| >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=9e-07 Score=78.32 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=58.7
Q ss_pred CceEEEEecCCCC------CCH---HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeec
Q 001060 1032 EVKSVYVRNLPST------VTA---FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1102 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~------~t~---~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g 1102 (1169)
+..+|+|.-++.. .++ .+|.+.|++||.|..+++ +.++ +||+|.+.++|.+||+++|..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~-v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRI-NQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEE-ETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEE-ecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 4478999988643 221 568999999999988764 3222 899999999999999999999999
Q ss_pred eEEEEEeccC
Q 001060 1103 RQVYIEERRP 1112 (1169)
Q Consensus 1103 ~~l~V~~~r~ 1112 (1169)
|.|+|..+.+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-06 Score=81.73 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC------HHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS------VDI 171 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s------~~l 171 (1169)
+.++|..++..+... |++++|...|++++..+|.+..+|..++..+.+.|++++|++.|+++|...|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 467899999998874 699999999999999999999999999999999999999999999999999988 677
Q ss_pred HHHHHHHHHhhcCCHHHHH
Q 001060 172 WLHYCIFAINTYGDPETIR 190 (1169)
Q Consensus 172 w~~y~~~~~~~~~~~e~Ar 190 (1169)
++.++..+. ..|+.+.++
T Consensus 81 ~~~~~~~~~-~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQG-AVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHH-HHHCCCCCS
T ss_pred HHHHHHHHH-HHHhHhhhH
Confidence 776666655 344444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6.2e-06 Score=73.25 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 176 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~ 176 (1169)
.+...|..++..+... +++++|..+|++++..+|.+...|..++.++.+.|++++|+..|++++...|.+...|..++
T Consensus 7 ~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4678899999988874 59999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHH
Q 001060 177 IFAI 180 (1169)
Q Consensus 177 ~~~~ 180 (1169)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=9.8e-06 Score=71.93 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+..|++++++. |++..++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666655 55566666666555
Q ss_pred HH
Q 001060 436 EQ 437 (1169)
Q Consensus 436 e~ 437 (1169)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-06 Score=78.99 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=61.6
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT 166 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 166 (1169)
.+|.+..+|..|+..+... |++++|+..|++++..+|.+..+|..++.++.+.|++++|++.|++++...|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5789999999999998884 5999999999999999999999999999999999999999999999998754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.4e-07 Score=82.26 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC------hHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL------PEIHL 429 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~------~~l~~ 429 (1169)
...|..++..+...|++++|+..|++++...|.++.+|+.++.++...|++++|+..|++++++. |++ ..+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 34566666666666677777777777777777666777777766666677777777777766655 454 55555
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~ 447 (1169)
.++.++...|+++.|...
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 555555555554444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5e-05 Score=82.28 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhccCCHH--HHHHHHHHHHHc-----CChHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHc-CCHHH
Q 001060 373 NKVVKLYERCLIACANYPE--YWIRYVLCMEAS-----GSMDLAHNALARATHVFVKR-LPEIHLFAARFKEQN-GDIDG 443 (1169)
Q Consensus 373 ~~a~~lyeraL~~~~~~~e--~W~~~a~~l~~~-----g~~e~A~~vl~rAl~~~~p~-~~~l~~~~a~~~e~~-g~~~~ 443 (1169)
.+++.+++|+|..+|.+.+ .|..++.++... |+.++|+..|+||+++. |+ +...+++||+++... |+.++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCHHH
Confidence 4677778888888887444 787777777663 67777777777777766 43 467777777766663 66666
Q ss_pred HHHHHHHHhhhcCCC
Q 001060 444 ARAAYQLVHTETSPG 458 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~ 458 (1169)
|+..++++ +...|.
T Consensus 259 a~~~L~kA-L~a~p~ 272 (301)
T 3u64_A 259 FDEALDRA-LAIDPE 272 (301)
T ss_dssp HHHHHHHH-HHCCGG
T ss_pred HHHHHHHH-HcCCCC
Confidence 66666666 444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.5e-05 Score=83.52 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=94.1
Q ss_pred HhCCCCHHHHHHHHHHHHhh-----h----hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----CCHHHHHH
Q 001060 93 KANSSDFSAWTALLEETEKL-----A----QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARV-----GSMDKVVE 156 (1169)
Q Consensus 93 ~~nP~d~~aw~~L~~~~~~~-----~----~~~i~~Ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~-----~~~e~A~~ 156 (1169)
+.+|.|.++++=++...-.. + -..+.+|+..++++|+++|. +...|..++.++.+. |+.++|++
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 44667777655333322211 1 13568899999999999999 677999999999995 99999999
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 157 VYERAVQGVTYS-VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 157 l~eraL~~~P~s-~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
+|+|+|++.|.. .+.++.|+.|+....++.+.++++++++|..-+..-....+++...+
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 999999999974 99999999999844699999999999999943221123456655554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=72.86 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT 182 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~-~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~ 182 (1169)
.++..+.. .+++++|+..|++++..+|.+.. +|..++.++...|++++|++.|++++...|.+...|..
T Consensus 5 ~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELIN--QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHH--HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 45555555 36999999999999999999999 99999999999999999999999999999999888743
Q ss_pred cCCHHHHHHHHHHHHHhcCC
Q 001060 183 YGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 183 ~~~~e~Ar~~~erAl~~~g~ 202 (1169)
+.+.++...|++++...+.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 1245667777777765544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=72.35 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=48.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRLPE-IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~-l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
..+..+...|++++|+..|+++++.. |+++. +|+.+|.++...|++++|+..|+++ ++++|++..+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA-IELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHH--------
Confidence 34444555556666666666666554 55555 6666666666666666666666665 4556655555432
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 001060 474 GNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~ 491 (1169)
+.+.++...|++++...|
T Consensus 75 ~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCc
Confidence 234555556665555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=72.08 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=64.2
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 001060 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV 200 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~ 200 (1169)
.+|++..+|..++..+.+.|++++|+..|++++...|.+...|+.++..+. ..|++++|+..|+++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhh
Confidence 479999999999999999999999999999999999999999999999988 8999999999999999853
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=86.10 Aligned_cols=66 Identities=30% Similarity=0.340 Sum_probs=56.2
Q ss_pred CHHHHHHHHhcCCCeeeeeEEee---cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1046 TAFEIEEEFQNFGRIKPDGVFVR---NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1046 t~~~L~~~F~~~G~i~~~~i~~~---~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.+++|++.|++||.|.++.|... ++.+|+++||+||+|.+.++|.+||.. +|..++||.|+|++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45789999999999999875321 234568999999999999999999987 9999999999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.7e-05 Score=89.57 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=90.3
Q ss_pred HHHcCChHHHHHHHHHHHHHhh----ccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHh----hhc---CCChHHHHHH
Q 001060 400 MEASGSMDLAHNALARATHVFV----KRL---PEIHLFAARFKEQNGDIDGARAAYQLVH----TET---SPGLLEAIIK 465 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~----p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~----~~~---~P~~~~~~~~ 465 (1169)
+..+|++++|+.+|++++++.. +++ ..++..+|.++..+|++++|+.+|++++ ..+ .|+....+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456777777777777776542 122 3455566777777777777777777652 112 3445556899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
++.++..+|++++|+.+|++|+++.. +.+| +....+...+...... .+.+++|..+|+++.+..-++..+|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999998653 2222 2223344445554443 7789999999999988776666666
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00072 Score=81.14 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHhhccChHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASG---------SMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~-~~~~~e~W~~~a~~l~~~g---------~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
.+...|+.+-+.|+.++|+.+|++.... +.-+...|..++..+...+ .++.|..+|++....-..-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4667788888999999999999998876 3456667777776665433 36788899988776543446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
|..+...+.+.|++++|..+|++.... +.| +...|..++..+.+.|++++|..+|++..+..- .++ ...|..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~----~Pd-~~ty~~L 181 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEV----VPE-EPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----CCC-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCC-HHHHHHH
Confidence 888889999999999999999986322 345 567788889999999999999999999887542 122 4567778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+..+.+ .|+.++|.++|++..+.
T Consensus 182 i~~~~~-~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMD-TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhh-CCCHHHHHHHHHHHHHh
Confidence 888777 99999999999988763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.3e-05 Score=68.10 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 95 NSSDFSAWTALLEETEKLAQD-NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~-~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
+|.|.+.|..++..+-..+++ ...+|+.+++++|..+|+|...++.++..+.+.|++++|+..|+++|...|. +.|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccH
Confidence 789999999999988643211 2689999999999999999999999999999999999999999999999886 5554
Q ss_pred HH
Q 001060 174 HY 175 (1169)
Q Consensus 174 ~y 175 (1169)
.-
T Consensus 80 ~~ 81 (93)
T 3bee_A 80 VT 81 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00028 Score=68.83 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHH
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGAR 445 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~ 445 (1169)
+|+++|+.+|+++..... ++.. ++.++...+.++.|+..|++|++. .++..++.++.++.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 367889999999987753 3334 888887777889999999999974 688999999999998 89999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~ 490 (1169)
..|+++ .+. ++...++.++.++.. .+++++|+..|++|++..
T Consensus 82 ~~~~~A-a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKA-CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHH-HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999998 443 778999999999998 899999999999999875
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00068 Score=69.18 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHh---CCH---HHHH-HHHHHHHhccCCC---------HHHHHHH
Q 001060 116 NIVKIRRVYDAFLAE---FPLC-YGYWKKYADHEARV---GSM---DKVV-EVYERAVQGVTYS---------VDIWLHY 175 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~---~P~~-~~~W~~~a~~e~~~---~~~---e~A~-~l~eraL~~~P~s---------~~lw~~y 175 (1169)
.+.+.|+.|++-|.. .-++ -+.|..|+.+.... |.. .... .+++||++.+-++ +.+|+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 577788999988876 2222 58999999987655 332 2244 7999999976433 7889999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHHH
Q 001060 176 CIFAINTYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSFK 249 (1169)
Q Consensus 176 ~~~~~~~~~~~e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~~~~~~~~~ 249 (1169)
+.+.. .++....+.+|..+... +|. ....+|..|+.+++..|++++|..||+++++. |...+.+.+..|.
T Consensus 87 a~~~~--~~~~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 87 INLFL--SNNFHESENTFKYMFNKGIGT--KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHhhc--ccccCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 98852 34466888999988763 444 36799999999999999999999999999997 6555555555553
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0004 Score=67.90 Aligned_cols=126 Identities=15% Similarity=0.282 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh---CCHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHhh
Q 001060 117 IVKIRRVYDAFLAEFPLC--YGYWKKYADHEARV---GSMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAINT 182 (1169)
Q Consensus 117 i~~Ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~---~~~e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~~ 182 (1169)
...+|+.||..|..+-.+ -+.|..|+.+.... |. .....+++||++.+-++ +.+|+.|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 345677888877764332 58999999998765 33 44778999999887443 67888888763
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 001060 183 YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251 (1169)
Q Consensus 183 ~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~ 251 (1169)
.+ .+.+|..+... |.-.....+|..|+.+++..|++++|..||+++++..-.-++.+-..+..|
T Consensus 82 -~d---p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 82 -SD---LHQFFEFLYNH-GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp -SC---HHHHHHHHHTT-TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 23 67888887763 232236799999999999999999999999999997333334444444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00071 Score=65.96 Aligned_cols=108 Identities=9% Similarity=-0.050 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA---- 402 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~---- 402 (1169)
.+++++++..|+++++. .. .... ++.++...+..++|+.+|+++... .+++.++.++.++..
T Consensus 8 ~~d~~~A~~~~~~aa~~--------g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL--------NE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHT--------TC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred ccCHHHHHHHHHHHHcC--------CC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 35678888899999873 32 2223 777777778889999999999876 789999999999988
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a 451 (1169)
.+++++|+..|++|++. .++..++.++.++.. .+++++|+..|+++
T Consensus 74 ~~d~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 78999999999999974 578999999999999 89999999999998
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00078 Score=68.73 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=69.9
Q ss_pred hhcHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHHHhcc---------CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 353 VTELENWHNYLDFIERD---GDF---NKVV-KLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~---gd~---~~a~-~lyeraL~~~~---------~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
.+-++.|..|+.|.+.. |.. .... .+++||+..+. .+..+|+.|+.++ ..+...++..+|.-.
T Consensus 27 dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L 105 (202)
T 3esl_A 27 DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYM 105 (202)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHH
Confidence 34488999999998754 332 2355 89999998754 3446999999975 233355677777655
Q ss_pred HHHh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 417 THVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 417 l~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
...- -.....+|..||.+++..|++.+|.++|+..
T Consensus 106 ~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 106 FNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4311 1357788888888888888888888888886
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00061 Score=76.94 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=101.5
Q ss_pred hhcHHHHHHHHHHH--HHcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---cC-C----hHHHHHHHHHH--H
Q 001060 353 VTELENWHNYLDFI--ERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEA---SG-S----MDLAHNALARA--T 417 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~--~~~g---d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~---~g-~----~e~A~~vl~rA--l 417 (1169)
|.++++|..|+.-. ...+ +..+|+.+|++|+..+|.+..+|-.++.++.. .+ . .......++++ +
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 44567777776532 2333 35689999999999999999988876655532 11 1 11111222221 2
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
... +..+.+|..++..+...|++++|+..++++ +.++|+ ...|..++.++.-.|+.++|...|++|+.+.|.
T Consensus 271 ~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rA-l~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 271 PEL-NNLSIIYQIKAVSALVKGKTDESYQAINTG-IDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred ccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 222 778899999998888889999999999999 788875 567888899999999999999999999999863
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00062 Score=70.67 Aligned_cols=126 Identities=15% Similarity=0.265 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHh---CC--HHHHHHHHHHHHhccCCC---------HHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAE---FPLCYGYWKKYADHEARV---GS--MDKVVEVYERAVQGVTYS---------VDIWLHYCIF 178 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~---~P~~~~~W~~~a~~e~~~---~~--~e~A~~l~eraL~~~P~s---------~~lw~~y~~~ 178 (1169)
.+.+.|..|++.|.. ..+--+.|..|+.+.... |. -..-..+++||++.+-++ +.+|+.|+++
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 566778888888865 234569999999988876 22 223678999999987544 6889888875
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHHH
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSFK 249 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~~~~~~~~~ 249 (1169)
. +..+.+|..+... |.-.....+|..|+.+++..|++.+|..||+++++. |...+.+.|..|.
T Consensus 130 ~-------~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 130 I-------DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFT 195 (223)
T ss_dssp C-------SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHH
T ss_pred c-------CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 2 3456788877763 332336799999999999999999999999999997 6655555555553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00033 Score=83.56 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH---HHHH
Q 001060 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 395 (1169)
Q Consensus 324 y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e---~W~~ 395 (1169)
+...++|++|+..|+++|...--.+.+..|.-+..+.+++..+...|++++|+.+|+++|... +.+++ .+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677888888888888643334555666777777788888888888888888888888663 44544 5667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 396 YVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
+|.++..+|++++|..+|++|+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777788888877777777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00097 Score=75.30 Aligned_cols=147 Identities=8% Similarity=0.029 Sum_probs=101.6
Q ss_pred HHHHhccCCHHHHHHHHHHH--HHcC---ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH---cC-----CHHHHHHH
Q 001060 381 RCLIACANYPEYWIRYVLCM--EASG---SMDLAHNALARATHVFVKRLPEIHLFAARFKEQ---NG-----DIDGARAA 447 (1169)
Q Consensus 381 raL~~~~~~~e~W~~~a~~l--~~~g---~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~---~g-----~~~~A~~~ 447 (1169)
++...-|.+++.|-.|.+.+ ...+ ++.+|+.+|++|+++. |++..+|-.++..+.. .+ ........
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 33444566666555554322 2222 4578999999999988 8888877765544421 11 11112222
Q ss_pred HHHH-hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 448 YQLV-HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 448 ~~~a-~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+..+ .+...|....+|..++......|++++|+..+++|+.+++. ...|..++..+.. .|+.++|...|++
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-------~~a~~llG~~~~~-~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------WLNYVLLGKVYEM-KGMNREAADAYLT 335 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 2221 23567889999998888888889999999999999999742 3456666666655 9999999999999
Q ss_pred HhhhcCCCHH
Q 001060 527 SLDHVQLSKP 536 (1169)
Q Consensus 527 Al~~~p~s~~ 536 (1169)
|+.++|....
T Consensus 336 AlrL~P~~~t 345 (372)
T 3ly7_A 336 AFNLRPGANT 345 (372)
T ss_dssp HHHHSCSHHH
T ss_pred HHhcCCCcCh
Confidence 9999997753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0041 Score=74.52 Aligned_cols=162 Identities=10% Similarity=0.047 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHh-ccCCH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG---------DFNKVVKLYERCLIA-CANYP 390 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g---------d~~~a~~lyeraL~~-~~~~~ 390 (1169)
...|-+.++.++|+..|+++.++ .++ .+...|..+|..+.+.+ +.++|..+|++.... +.-+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~---Gv~----pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRN---GVQ----LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHH---TCC----CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHc---CCC----CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 45667888999999999998874 122 24567888887664433 367899999998766 34477
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHANM 469 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~~ 469 (1169)
..|..++..+.+.|++++|..+|++..+.-..-+...|..+...+.+.|++++|..+|++... .+.| +...|..++..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 889999999999999999999999987653334667888888888999999999999998632 2345 45688899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 001060 470 ERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+.+.|+.++|..+|++..+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT
T ss_pred HhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999988754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00045 Score=62.38 Aligned_cols=71 Identities=10% Similarity=-0.107 Sum_probs=45.4
Q ss_pred ccCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC
Q 001060 386 CANYPEYWIRYVLCMEASGS---MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 458 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~---~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~ 458 (1169)
.|.++++|..++..+...++ .++|..+|++|+++. |+++..++.+|..+.+.|++++|+.+|+++ ++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~-l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL-LDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC
Confidence 35666677777766654433 466666666666655 666666666666666666666666666665 455554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00095 Score=65.52 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 372 FNKVVKLYERCLIACANYPEYWIRYVLCMEASG---SMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 372 ~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g---~~e~A~~vl~rAl~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
..+++..|++.+...+.+.+..++|+..|.+.+ ++++++.+|+..++.. +.+..+.++.+|..+.+.|++++|+..
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 346777888888888889999999999999877 6678999999999876 225678888899889999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHH
Q 001060 448 YQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
++++ +++.|++.++....-.++
T Consensus 94 ~~~l-L~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 94 VRGL-LQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHH-HHHCTTCHHHHHHHHHHH
T ss_pred HHHH-HhcCCCCHHHHHHHHHHH
Confidence 9998 888999877655444333
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.002 Score=63.04 Aligned_cols=103 Identities=16% Similarity=0.281 Sum_probs=69.0
Q ss_pred HHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHH
Q 001060 335 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACAN---------YPEYWIRYVLCMEA 402 (1169)
Q Consensus 335 ~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~---gd~~~a~~lyeraL~~~~~---------~~e~W~~~a~~l~~ 402 (1169)
..||..|.. | ...+-++.|..||.|.++. |. .....+++||+..+.. +..+|+.|+.+.
T Consensus 11 ~~fE~~i~~-y-----~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 81 (152)
T 4a1g_A 11 QMLEAHMQS-Y-----KGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN-- 81 (152)
T ss_dssp HHHHHHTTS-C-----CSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB--
T ss_pred HHHHHHHHh-C-----CCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc--
Confidence 457777763 2 1234488999999998764 33 3478899999988643 346888888753
Q ss_pred cCChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.+ +.++|.-... |- .....+|..||.+++..|++.+|.++|+..
T Consensus 82 -~d---p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 82 -SD---LHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp -SC---HHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 5555554432 11 346677777777777777777777777776
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0015 Score=64.80 Aligned_cols=119 Identities=13% Similarity=0.325 Sum_probs=83.5
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHh---CCH-HHHHHHHHHHHhccCCC---------HHHHHHHHHHHHhhcCCH
Q 001060 122 RVYDAFLAEF--PLCYGYWKKYADHEARV---GSM-DKVVEVYERAVQGVTYS---------VDIWLHYCIFAINTYGDP 186 (1169)
Q Consensus 122 ~~ye~~l~~~--P~~~~~W~~~a~~e~~~---~~~-e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~~~~~~ 186 (1169)
+.|+..|..+ .+--..|..|+.+.... |.. ..-..+++||+..+-++ +.+|+.|+.+. ++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----~~- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC----NE- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC----SC-
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc----CC-
Confidence 3455444322 22258899999987663 222 23467899999887443 68898888763 33
Q ss_pred HHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHHH
Q 001060 187 ETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSFK 249 (1169)
Q Consensus 187 e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~~~~~~~~~ 249 (1169)
.+.+|..+... +|. ....+|..|+.+++..|++.+|..||+++++. |...+.+.+..|.
T Consensus 79 --p~~if~~L~~~~IG~--~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~ 141 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGV--SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQ 141 (164)
T ss_dssp --HHHHHHHHHHTTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 56778877763 344 36799999999999999999999999999997 6665655555554
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0016 Score=67.66 Aligned_cols=91 Identities=23% Similarity=0.378 Sum_probs=65.6
Q ss_pred hcHHHHHHHHHHHHHc---C-C-hHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 001060 354 TELENWHNYLDFIERD---G-D-FNKVVKLYERCLIACAN---------YPEYWIRYVLCMEASGSMDLAHNALARATH- 418 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~---g-d-~~~a~~lyeraL~~~~~---------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~- 418 (1169)
.-++.|..||.|.+.. | + -.....+++||+..+.. +..+|+.|+.+. +.+..+|.-...
T Consensus 70 DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~ 143 (223)
T 4aez_C 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHH 143 (223)
T ss_dssp CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHC
Confidence 4488899999999865 3 2 23478899999998643 346999999842 244455554432
Q ss_pred -HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 419 -VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 419 -~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
|. .....+|..||.+++..|++.+|..+|+..
T Consensus 144 ~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 144 HIG-QESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp TCS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Ccc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 357788888888888888888888888886
|
| >2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00083 Score=60.56 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=59.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC-----CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHH-HhCCCeeeceEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF-----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI-QASPIQLAGRQV 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~-----G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai-~~~~~~i~g~~l 1105 (1169)
..++|-+-|||..+++..|+.+++++ |.|+++ .++... |-|+|+|.|...|-+|. ..+|.+|.||.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI--~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI--LLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE--EEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE--EEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 35788899999999999999999999 999985 344332 46999999999888876 669999999999
Q ss_pred EEEe
Q 001060 1106 YIEE 1109 (1169)
Q Consensus 1106 ~V~~ 1109 (1169)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9853
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0022 Score=63.51 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=69.1
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHHhccC---------CHHHHHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDF-NKVVKLYERCLIACAN---------YPEYWIRYVLCMEA 402 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~---gd~-~~a~~lyeraL~~~~~---------~~e~W~~~a~~l~~ 402 (1169)
.||..|. .|- ...-++.|..||.|.+.. |.. .....+++||+..+.. +..+|+.|+.+.
T Consensus 5 ~fE~~i~-~~~-----gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 76 (164)
T 2wvi_A 5 AFEYEIR-FYT-----GNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC-- 76 (164)
T ss_dssp HHHHHCC-CCC-----SSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHh-hcC-----CCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc--
Confidence 4666664 222 234478899999998763 222 2467799999988643 346999888753
Q ss_pred cCChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
++ ++.+|.-... |. .....+|..||.+++..|++.+|.++|...
T Consensus 77 -~~---p~~if~~L~~~~IG-~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIG-VSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp -SC---HHHHHHHHHHTTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 4445544332 22 357788888888888888888888888876
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.003 Score=58.11 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
..-++.++....+.+++..|...|+.|+...+.... ....+.++..++..+++ .|++++|+.++++++++.|++....
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 345678889999999999999999999987643321 23567889999999887 9999999999999999999999887
Q ss_pred HHHHHhHhh
Q 001060 539 EALIHFESI 547 (1169)
Q Consensus 539 ~~~a~~E~~ 547 (1169)
.++..|+..
T Consensus 84 ~n~~~~~~~ 92 (104)
T 2v5f_A 84 GNLKYFEYI 92 (104)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 776666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=64.88 Aligned_cols=92 Identities=14% Similarity=-0.019 Sum_probs=78.6
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
.+....+.|.+.+..++.+.++.+.++-.+.++. .+++.+++.+++.++... | .+.++++.++-.+++.++|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3455667778888889999999999998887753 247889999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhccCCCHHH
Q 001060 157 VYERAVQGVTYSVDI 171 (1169)
Q Consensus 157 l~eraL~~~P~s~~l 171 (1169)
.++++|+..|.+...
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999988644
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0079 Score=55.20 Aligned_cols=78 Identities=13% Similarity=-0.025 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.+-.+.+|.++...++++.|..-|+.|++...+ ....++..++..+.+.|++++|+.+++++ +++.|++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-LELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH-HhcCCCCHHH
Confidence 3445556666666666666666666666665421 23456666666666666666666666666 5566666555
Q ss_pred HHHHH
Q 001060 463 IIKHA 467 (1169)
Q Consensus 463 ~~~~a 467 (1169)
..++.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 44444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0051 Score=72.06 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHhh----hcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHHH
Q 001060 438 NGDIDGARAAYQLVHT----ETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~----~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~~~~~~~l~~~~a 507 (1169)
.|++++|..+|++++. .+.|+ ....+..++.++..+|++++|+.+|+++|++.. +.+| +.....+.+++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-LNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Confidence 4566666666666521 13444 445688889999999999999999999998643 2222 33344578888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhh
Q 001060 508 RFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
.+++. .|++++|..+|++||++
T Consensus 390 ~~~~~-qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMG-LENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHH
Confidence 88776 99999999999999975
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.023 Score=66.59 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH---HHHH
Q 001060 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 395 (1169)
Q Consensus 324 y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e---~W~~ 395 (1169)
+...+++++++..|+++|...--.+.+..+.-+..+.+++..+...|++++|+.+|+++|... +.+++ .+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445678899999999998754444566677777888888888889999999999999998763 55655 6778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 396 YVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
+|.++..+|++++|...|++|+++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8888888999999999999988866
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.024 Score=66.38 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH---HHHHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIRYVLCM 400 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e---~W~~~a~~l 400 (1169)
+|++|+..|+++|...--.+.|..+.-...+.+++..+...|++++|+.+|+++|... +.+++ .+.++|.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 5778888888887643334455566667777777888888888888888888888652 45554 566777777
Q ss_pred HHcCChHHHHHHHHHHHHHh
Q 001060 401 EASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~ 420 (1169)
..+|++++|...|+||+++.
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHH
Confidence 77888888888888877765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=68.53 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=67.6
Q ss_pred HcCCHHHHHHHHHHHhh----hcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHH
Q 001060 437 QNGDIDGARAAYQLVHT----ETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQY 506 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~----~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~~~~~~~l~~~~ 506 (1169)
.+|++++|+.+|++++. .+.|+ .+.++..++.++..+|++++|+.+|+++|.... +.+| +.....+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-p~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-PVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-hHHHHHHHHH
Confidence 45677777777777621 12333 455678888889999999999999999998643 2222 3334457788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+.+++. .|++++|..+|++|+++
T Consensus 378 a~~~~~-~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLH-QGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHH
Confidence 888776 99999999999999974
|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=53.11 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=61.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-----CCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQN-----FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~-----~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
+.+|.|.|||..++++.|+-.|++ =|+|..+.. .. +-|+|+|.+.+.+++.|+...+.|+|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 589999999999999999999976 368887542 11 4789999999999999998789999999999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
....++.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 8765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.068 Score=50.43 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHhhc-cChHHHHHHHHHHHHcCCHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL---AHNALARATHVFVK-RLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~---A~~vl~rAl~~~~p-~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
....+...|.+.+...+...+.-+.||..|.+...... ++.+|+..+....| ...+..+.+|....+.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34566778888888778889999999998887765544 77777776664412 455677777888888899999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.++.+ +++.|++.++....-.++
T Consensus 96 ~~~~l-L~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 96 YVRGL-LQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred HHHHH-HHhCCCCHHHHHHHHHHH
Confidence 88887 788888877755544443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.31 Score=55.80 Aligned_cols=172 Identities=11% Similarity=-0.005 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHHH----
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHL---- 429 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~-----~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~~---- 429 (1169)
..+++.+.+.|+.++...++......... ...+-..+++.+.. .+..+.-..++..+++-. .+....|+
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34556666667777766666654433322 12333344444433 234444455666666533 33333443
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC-CccCchHH
Q 001060 430 --FAARFKEQNGDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK-EHSQTLPM 501 (1169)
Q Consensus 430 --~~a~~~e~~g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~-~~~~~~~~ 501 (1169)
.++.++...|++.+|.+++.++..++.. ...+++..-+.++...+|+.+++.+|.+|......- .++.....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5788999999999999999887443322 245678888889999999999999999998865321 11222233
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
+...-+.+.....++++.|...|-++++.+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 4444444444049999999999999987653
|
| >1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.082 Score=49.04 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=55.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeec-eEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG-RQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g-~~l~V~~ 1109 (1169)
..+.|-|-+.|... ...|-.+|++||.|.+.. . . ....+-.|.|.+..+|++||..||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~--~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHV--M--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE--E--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEec--c--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 45788999999886 556779999999998743 2 1 13469999999999999999999999986 4455544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.45 E-value=1.3 Score=50.60 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhccCCHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER-DGDFNKVVKLYERCLIACANYPEY 392 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~-~gd~~~a~~lyeraL~~~~~~~e~ 392 (1169)
+..+..++++|.+.+++++-...+... |++|..-+.. .-..+-+.+++.... .+..+.-+.+...|+.-+...--.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ka-k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~ 95 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVT--RPFLSSISKA-KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHT--TTGGGGSCHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhchH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788999999998877776654 5677654322 334556677776644 355667788888888776655556
Q ss_pred HH------HHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hc--C
Q 001060 393 WI------RYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHT---ET--S 456 (1169)
Q Consensus 393 W~------~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~---~~--~ 456 (1169)
|+ +++.++...|++.+|..++.+.++-+.. ...++++.-.+++...+++.+++.+|.++.. .+ .
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 64 7889999999999999999988875522 1235666677888899999999999998731 11 1
Q ss_pred CC-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhh
Q 001060 457 PG-LLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 457 P~-~~~~~~~~a~~e~-r~g~~e~A~~iy~~Al~~~~ 491 (1169)
|. ...+...-|.++. ..++|..|...|-.++..+.
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 21 2234555666777 78999999999999987664
|
| >3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.057 Score=50.75 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=55.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeec---------CCCc-----ccccEEEEEECCHHHHHHHHHhCCCe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN---------RKDV-----VGVCYAFVEFEDISGVQNAIQASPIQ 1099 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~---------~~~g-----~~~g~afV~F~~~~~a~~Ai~~~~~~ 1099 (1169)
..|.|-+.|.+.+.. +-+.|++||.|.+. +...+ +... .+.++-.|.|++..+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~-~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILED-FEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSC-CGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeee-ccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 567788898766655 55899999999762 11111 0000 13568899999999999999999999
Q ss_pred eeceEEEEEecc
Q 001060 1100 LAGRQVYIEERR 1111 (1169)
Q Consensus 1100 i~g~~l~V~~~r 1111 (1169)
|+|..|-|..-+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999887787654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.48 Score=44.87 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=74.2
Q ss_pred ccCCCCCCchHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Q 001060 74 VDGSVPAMSGEEDRLWNIVKAN--SS-DFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPL-CYGYWKKYADHEARV 148 (1169)
Q Consensus 74 ~~~~~~~~~~~~~~l~~al~~n--P~-d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~P~-~~~~W~~~a~~e~~~ 148 (1169)
.|...+-.+.++..|++..... +. ..++-+.++-.+.++. ..++.+++.+++.++...|. .-++|+.+|--+.+.
T Consensus 12 ~~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl 91 (134)
T 3o48_A 12 KDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL 91 (134)
T ss_dssp TGGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh
Confidence 3444455667788888777553 21 3455555554443332 34778999999999999994 589999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCCHHH
Q 001060 149 GSMDKVVEVYERAVQGVTYSVDI 171 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s~~l 171 (1169)
|+|++|++..+++|+..|.|...
T Consensus 92 gdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 92 GEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhHHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999988644
|
| >1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.18 Score=44.64 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=42.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
+-++| +.|.++...||.++|+.||.|. |.-.+. .-|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 44556 9999999999999999999653 433343 2799999999999999874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.23 Score=46.85 Aligned_cols=85 Identities=15% Similarity=-0.001 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 85 EDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVEVYERA 161 (1169)
Q Consensus 85 ~~~l~~al~~nP~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~l~era 161 (1169)
.+.+.+.+..++-..++-+.++-.+-++. ..++.+.+.+++.++... | ..-++.+.+|-.+.+.|+|++|++.++.+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444555555554444443321 123344555555555544 3 33445555555555555555555555555
Q ss_pred HhccCCCH
Q 001060 162 VQGVTYSV 169 (1169)
Q Consensus 162 L~~~P~s~ 169 (1169)
|+..|.|.
T Consensus 101 L~~eP~n~ 108 (126)
T 1nzn_A 101 LQTEPQNN 108 (126)
T ss_dssp HHHCTTCH
T ss_pred HHhCCCCH
Confidence 55555553
|
| >3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.38 Score=45.12 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCCCceEEEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMVSGS 803 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~~~ilv~v~G~ 803 (1169)
...+..|+..++ .+.+.|..+|.++..++...+....|...|.+.-..+...++..+.+..++...+ ++..++...-.
T Consensus 9 ~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-gd~A~~~~~~~ 87 (129)
T 3hx8_A 9 EAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQES-GDFAFESGSFS 87 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCEEEEEEEEE
Confidence 567899999987 6899999999998766533233345555444333333333444555555554432 23233322222
Q ss_pred EEe--cCccccc--eeEEEEEEEee-CCeEEEEcceEE
Q 001060 804 VKT--KEFCRRR--KFVQTFFLAPQ-EKGYFVLNDIFH 836 (1169)
Q Consensus 804 ~~~--~~~~~~~--~F~q~F~L~~~-~~~y~v~nDifr 836 (1169)
++. .+. ... ...-++++..+ +++|.|..|.|-
T Consensus 88 ~~~~~~~G-~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 88 LKAPGKDS-KLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEECTTS-CEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEeeCCCC-CeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 222 122 122 23445666677 789999999983
|
| >1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.13 Score=46.29 Aligned_cols=73 Identities=8% Similarity=0.084 Sum_probs=58.1
Q ss_pred eEEEEecCCCCC-C----HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1034 KSVYVRNLPSTV-T----AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1034 ~~i~V~nlp~~~-t----~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
.+|+|.||+.++ . .+.++++|..|+++..... ++ +..-..|.|.+.++|.+|-.. ++..++|+.|+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cC------cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 689999998765 2 2577999999999987542 32 223568999999999999876 899999999999
Q ss_pred EeccCC
Q 001060 1108 EERRPN 1113 (1169)
Q Consensus 1108 ~~~r~~ 1113 (1169)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
|
| >4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.46 Score=46.05 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=67.9
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
..++..|+..++ .+.+.|..+|.++..++ ..|....|...|.+....+..-.+.. +.+...+.....++..++.+.
T Consensus 22 ~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~-~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A~v~~~ 100 (143)
T 4i4k_A 22 AALPARIVAAWADHDADRFADVFAEDGTMI-LPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIALLITE 100 (143)
T ss_dssp HTHHHHHHHHHHTTCHHHHHTTEEEEEEEE-ETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhcCceEE-eCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEEEEEec
Confidence 567899999887 68999999999987776 56644456555544433333333332 233333332222233444455
Q ss_pred EEEEecCcc---ccceeEEEEEEEeeCCeEEEEcc
Q 001060 802 GSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLND 833 (1169)
Q Consensus 802 G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nD 833 (1169)
|.+..++.. +.+.+.+|+++...+++|.|...
T Consensus 101 ~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~ 135 (143)
T 4i4k_A 101 GGILAPGETEASGDGAVRASWLAVEQDGQWRLAAY 135 (143)
T ss_dssp EEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEE
T ss_pred cceecCCCCCCCcccceEEEEEEEEECCcEEEEEe
Confidence 666555532 23678999999999999998763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.02 E-value=1.8 Score=54.35 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
...+.++++.|..+.|+.+.+ ++..-+.+ ....|++++|.++.+. -+.+..|..+|++..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFEL---ALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchheeh---hhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcC
Confidence 556677777887777665443 22222222 2356788888766421 246788999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001060 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
+++.|..+|.++ .. +-....++...++.+....+-+.+..... + ..+...+...|++++
T Consensus 696 ~~~~A~~~y~~~-~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----------~--~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 696 NFKLAIEAFTNA-HD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK----------F--NLAFNAYWIAGDIQG 754 (814)
T ss_dssp CHHHHHHHHHHH-TC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------H--HHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHc-cC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----------h--HHHHHHHHHcCCHHH
Confidence 999999999886 21 22334444456777766666555554321 1 111111223788888
Q ss_pred HHHHHHHHh
Q 001060 520 ARQILVDSL 528 (1169)
Q Consensus 520 Ar~i~~kAl 528 (1169)
|.++|.+.-
T Consensus 755 a~~~~~~~~ 763 (814)
T 3mkq_A 755 AKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888877553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.95 E-value=0.89 Score=43.04 Aligned_cols=93 Identities=11% Similarity=-0.063 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 376 VKLYERCLIACANYPEYWIRYVLCMEASGSM---DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 376 ~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~---e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
+.-|++=+ ...-.++.-++||..|.+..+. ..++.+|+..+...+....+.++.+|.-..+.|++++|+...+.+
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l- 104 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL- 104 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 33454433 3344678888888888876544 467788888777653355678888888888999999999999987
Q ss_pred hhcCCChHHHHHHHHHHH
Q 001060 453 TETSPGLLEAIIKHANME 470 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e 470 (1169)
+++.|++.++......++
T Consensus 105 L~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 105 FEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HTTCTTCHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHH
Confidence 888999877655444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.78 Score=45.24 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHHhh--ccChHHH
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPE---------YWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIH 428 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e---------~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--p~~~~l~ 428 (1169)
+.-++.+...+.++.|+.+...++....++++ +.+.+|+.+..++.+..|...|++|++... ++.+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33344456678899999998887766544333 677788888889999999999999987541 1111110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
-.. + . ...+... .. .+...++-++.+.++..++++++|+.+++.
T Consensus 104 ~~~-------~-~---~ss~p~s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 104 PST-------G-N---SASTPQS-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccc-------c-c---cCCCccc-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000 0 0 0000000 11 233556667777777777777777777654
|
| >3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.11 Score=46.29 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=42.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
+-++| +.|.++...||.++|+.||.|. |.-.+. .-|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEET------TEEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 34455 9999999999999999999543 444444 2799999999999999985
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.54 E-value=3.7 Score=41.04 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
..+.|+++.|..+-+.. .+...|.+++..-..+|+++-|..+|.++-. ...+.+. +...|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~L----y~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFL----YLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHH----HHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHH----HHHhCCHHHHH
Confidence 35677888777765543 6678888888888888888888888876532 2223222 23466666655
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++-+.+.. .-++. + ......-+|+++++..+|.
T Consensus 81 kla~iA~~--~g~~n-~---af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQT--REDFG-S---MLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHH--TTCHH-H---HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHH--CccHH-H---HHHHHHHcCCHHHHHHHHH
Confidence 55444311 11111 1 1112223577777777764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.17 E-value=1.2 Score=42.67 Aligned_cols=98 Identities=7% Similarity=-0.051 Sum_probs=74.2
Q ss_pred ccCCCCCCchHHHHHHHHHHhC---CCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Q 001060 74 VDGSVPAMSGEEDRLWNIVKAN---SSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPL-CYGYWKKYADHEARV 148 (1169)
Q Consensus 74 ~~~~~~~~~~~~~~l~~al~~n---P~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~P~-~~~~W~~~a~~e~~~ 148 (1169)
.|...+-.+.+++.|++..... .-..++-+.++-.+-++. ..++.+.+.+++.++...|. .-++.+.+|--+.+.
T Consensus 11 ~~~~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl 90 (144)
T 1y8m_A 11 KDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL 90 (144)
T ss_dssp GGGGCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh
Confidence 3333455567788888877655 445566666655544432 35778999999999999995 567888888899999
Q ss_pred CCHHHHHHHHHHHHhccCCCHHH
Q 001060 149 GSMDKVVEVYERAVQGVTYSVDI 171 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s~~l 171 (1169)
|+|++|++..+.+|+..|.|-..
T Consensus 91 ~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 91 GEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHH
T ss_pred hhHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999988543
|
| >1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.64 Score=41.10 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=51.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
++|-|++||+.+|++++.+.++....+.... .+..+.+. ...+-|+|.|.+.+++..-.+. +|+.+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-FFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEE-EEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999999999999999888765533 23322221 2346789999999998888877 7887754
|
| >3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.079 Score=61.52 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1102 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g 1102 (1169)
..++|||. +|..+++.+|.+.|++||+|.++. . ++..| .|+.|||.+.+++.+++....+-..+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~--~-~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHF--F-YESFG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEE--E-ECSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEE--E-EccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 35899998 799999999999999999999953 3 23222 69999999999999887664444443
|
| >3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=91.11 E-value=1.6 Score=42.32 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
..++..|...++ .+.+.|..+|.++..++...|....|...|.+....+..-.+.. +.+...+.....++..++.+.
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A~v~~~ 88 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAVVT 88 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEEEEEEE
Confidence 467889998887 68999999999988777556654556655544443333333332 222222222111233344444
Q ss_pred EEEE---ecCccc--cceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 802 GSVK---TKEFCR--RRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 802 G~~~---~~~~~~--~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
..++ ..+..+ ...+.+|++|...+++|.|..+--..++
T Consensus 89 ~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~ 131 (146)
T 3gzr_A 89 LIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVN 131 (146)
T ss_dssp EEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCc
Confidence 3342 122211 2468999999999999999998776554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.07 E-value=1.1 Score=55.43 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=86.2
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHcCC-hHHHHHHHHHHHHHhh-----------------
Q 001060 362 YLDFIERDGD-FNKVVKLYERCLIACANYPEYW-IRYVLCMEASGS-MDLAHNALARATHVFV----------------- 421 (1169)
Q Consensus 362 yl~~~~~~gd-~~~a~~lyeraL~~~~~~~e~W-~~~a~~l~~~g~-~e~A~~vl~rAl~~~~----------------- 421 (1169)
++.+....+. ++.++.++++.....|...-+. ..++..+...++ --+|..++.++++...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3444444555 5779999999888887654322 223333332222 2246677777764321
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 486 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~A 486 (1169)
+....+...-++|+...|+++-|+++-+++ +.+.|.....|..++.++..+|+++.|.-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A-V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTS-TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111234555688899999999999999998 8899999999999999999999999999776644
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.89 E-value=1.5 Score=42.01 Aligned_cols=82 Identities=11% Similarity=-0.039 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGS---MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~---~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
....+.-++||..|.+..+ ..+++.+++..+...+....+..+.+|.-..+.|+|++|+.+.+.+ +++.|++.++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l-L~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCCCcHHHH
Confidence 4577888999988888764 4467778888777553245567777777788899999999999987 78899887765
Q ss_pred HHHHHH
Q 001060 464 IKHANM 469 (1169)
Q Consensus 464 ~~~a~~ 469 (1169)
...-.+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.51 E-value=5.6 Score=39.76 Aligned_cols=110 Identities=9% Similarity=-0.004 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 176 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~ 176 (1169)
.|.+.-+.|+- ++ |+++.|..+.+.+ ++...|..+++..+++|+++-|+++|+++=.. . .+
T Consensus 6 ~D~~~rF~LAL---~l--g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~-----~L 66 (177)
T 3mkq_B 6 QDPHIRFDLAL---EY--GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----D-----KL 66 (177)
T ss_dssp SCHHHHHHHHH---HT--TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----H-----HH
T ss_pred CChHHHHHHHH---hc--CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----H-----HH
Confidence 45555555555 32 5899998887665 78899999999999999999999999876332 1 22
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001060 177 IFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 233 (1169)
Q Consensus 177 ~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~ 233 (1169)
.|+....|+.++..++-+.|.. .|. ....+..|+ ..|+++.+.++|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-~g~---~n~af~~~l----~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-RED---FGSMLLNTF----YNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-TTC---HHHHHHHHH----HHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-Ccc---HHHHHHHHH----HcCCHHHHHHHHHHC
Confidence 3333356888888777666664 222 112223333 368999999999765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.44 E-value=2.5 Score=53.03 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERC 382 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyera 382 (1169)
+....++++.|.+..+. + .+...|..+++...+.++++.|+..|.+|
T Consensus 661 ~~l~~~~~~~A~~~~~~-----------~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----------E--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----------C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-----------h--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455666666554421 1 23467888888888888888888888875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.41 E-value=1.5 Score=54.35 Aligned_cols=119 Identities=10% Similarity=0.003 Sum_probs=78.0
Q ss_pred HHHHHH-HHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhc--------------
Q 001060 324 YKKAKE-FDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDF-NKVVKLYERCLIAC-------------- 386 (1169)
Q Consensus 324 y~~~~~-~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~-~~a~~lyeraL~~~-------------- 386 (1169)
+..+++ ++.++..|++..+ .+|. .......++...+..++. -+++.+..+.|...
T Consensus 258 ~~~t~~~~~~a~~~le~L~~--------~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 258 IAITPSLVDFTIDYLKGLTK--------KDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHTCGGGHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HcccccHHHHHHHHHHHHHh--------hCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 333444 4667777877766 2332 222223334333333322 25666666665421
Q ss_pred ----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 387 ----ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 387 ----~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+...++...-+.||...|+++.|+.+-++|+... |..-..|..++.++...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1112455556788888999999999999999877 888999999999999999999999877753
|
| >3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27 | Back alignment and structure |
|---|
Probab=90.40 E-value=0.86 Score=43.01 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=61.9
Q ss_pred HhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC--Cc-ce--eEeeeeccccCCCceE
Q 001060 724 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FT-AI--EIKTINSLGSWNGGVL 797 (1169)
Q Consensus 724 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~--~~-~~--~i~~~d~q~~~~~~il 797 (1169)
-...+..|+..++ .+.+.+..+|.++..+....+....|. ++|.+.+..+- +. .+ .|..+... .++.++
T Consensus 13 i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~~~~G~---~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~gd~a~ 87 (135)
T 3d9r_A 13 IEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGK---DELAEVYLSVFETVGFDMAYEIKEVVQT--SADWAF 87 (135)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESH---HHHHHHHHHHHHHEEEEEEEEEEEEEEE--ETTEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCcccCH---HHHHHHHHHHHhhcCCceeEEEEEEEEe--cCCEEE
Confidence 4678999999998 688999999999865543222222344 44454444321 11 22 23333221 123233
Q ss_pred EEE--EEEEEecCcccc--ceeEEEEEEEee-CCeEEEEcceEEec
Q 001060 798 VMV--SGSVKTKEFCRR--RKFVQTFFLAPQ-EKGYFVLNDIFHFL 838 (1169)
Q Consensus 798 v~v--~G~~~~~~~~~~--~~F~q~F~L~~~-~~~y~v~nDifr~~ 838 (1169)
+.+ .|.++..+..+. ..+.-++++..+ +++|.|..|+|..+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 88 VRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 332 233333211122 234557788887 89999999999754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.36 E-value=2.9 Score=41.17 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChH---------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPE---------IHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~---------l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+.-+.-+...+.++.|+-+...++.+. .+++. +.+.+|+.+...+++..|...|+++
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555667788999988888877765 33333 7788899999999999999999987
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.32 E-value=1.8 Score=50.79 Aligned_cols=169 Identities=7% Similarity=0.030 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHcCCHHH----------HHH----HHHHHhhhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDG----------ARA----AYQLVHTETSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIA 488 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~----------A~~----~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~ 488 (1169)
...+|+.++.+.+..|+... .|. .+..+.+..+.. ...+|..+...+...+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 45677777777777766543 222 223332333333 34467777778888889999999998875
Q ss_pred hhhCCCccC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH---H----HHHHHHHhHhhCCChhHHHHHHHH
Q 001060 489 IEKGKEHSQ-TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK---P----LLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 489 ~~~~~~~~~-~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~---~----l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
+|....+. .....+..++++... .+++.+|...|..|+...|.+. . ++.-++-..+-+|.-.. +.+
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~----r~l 332 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE----LSF 332 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC----HHH
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC----hHH
Confidence 44221111 112233444666554 8999999999999999887542 1 11122222222232111 223
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhhhCC
Q 001060 561 VDKFLMSNSDSPSTANAAEREELSCVFLEFLG--LFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 561 ~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~--~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
|... . + ...+.-|.++.. +.||+.....+..++...|..
T Consensus 333 f~q~-----~----l-----~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~ 373 (523)
T 4b4t_S 333 FHQS-----N----M-----QKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLK 373 (523)
T ss_dssp HTTT-----S----C-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred hhch-----h----H-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceecc
Confidence 2210 0 0 012344555443 358999999999999888864
|
| >3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28 | Back alignment and structure |
|---|
Probab=88.96 E-value=1.3 Score=44.29 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=66.7
Q ss_pred HhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEE
Q 001060 724 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMV 800 (1169)
Q Consensus 724 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v 800 (1169)
=..++..|+..++ .+.+.+..+|.++..++.+.|....|...|.+....+....+.. +.+...+.....++..++.+
T Consensus 18 I~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~A~v~~ 97 (172)
T 3cu3_A 18 IRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALMLV 97 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCCEEEEEE
Confidence 3568899999987 69999999999987776445544455444433322232222322 22222222222123344445
Q ss_pred EEEEEecCcc---ccceeEEEEEEEeeCCeEEEEcceEE
Q 001060 801 SGSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLNDIFH 836 (1169)
Q Consensus 801 ~G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nDifr 836 (1169)
.+.+...+.. +...+..+++|...+++|.|...-..
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s 136 (172)
T 3cu3_A 98 VIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNT 136 (172)
T ss_dssp EEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECC
T ss_pred EEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcC
Confidence 5557665431 23556778888888999999986654
|
| >3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259} | Back alignment and structure |
|---|
Probab=87.40 E-value=2.2 Score=41.30 Aligned_cols=111 Identities=7% Similarity=0.058 Sum_probs=66.7
Q ss_pred hHHHHHHHHhhh-hCcccccccccCC--ceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCC-CceEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDA--SSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN-GGVLVMV 800 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~--s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~-~~ilv~v 800 (1169)
.+-.+.||.-|+ .+.+.|..+|.++ .++++..|....|...+.+--+.+...+ ..+.|...|.+-..+ +..++.+
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~-~~~~i~~~~v~v~~~gd~A~v~~ 89 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFGAA-GRFRLQVKAVHEIRQADHVIRIV 89 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHHHH-CCEEEEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHcCC-CcEEEEEEEEEEEecCCEEEEEE
Confidence 345778888886 7999999999987 4455655555555544432222222211 134555444443222 2345555
Q ss_pred EEEEEecCc-cccceeEEEEEEEeeCCeEEEEcceEE
Q 001060 801 SGSVKTKEF-CRRRKFVQTFFLAPQEKGYFVLNDIFH 836 (1169)
Q Consensus 801 ~G~~~~~~~-~~~~~F~q~F~L~~~~~~y~v~nDifr 836 (1169)
...+...+. .+...+.-|+++..++++|.|...--.
T Consensus 90 ~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S 126 (144)
T 3gwr_A 90 DEFLTIGDETAPRPAILATNVYRREADGWRMVLHHAS 126 (144)
T ss_dssp EEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecC
Confidence 666766322 122567788888888899999886663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.05 E-value=50 Score=38.19 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhCCCccCc
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAI-EKGKEHSQT 498 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~-~~~~~~~~~ 498 (1169)
..+...++.+++..|++.+|..++..+..+..-. -.++++.-+.++...+++.+|..+++++... +....+...
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 4567789999999999999999999875543221 2457888888889999999999999998643 222111111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
...++...+.+... .+++.+|.+.|..++..
T Consensus 217 k~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLH-KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence 12334555666555 89999999998888764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.69 E-value=4.8 Score=46.67 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-Ch----HH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LP----EI 427 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~---~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-~~----~l 427 (1169)
...+..+++++.+.||++.|..+|.++...|. +-.++|+..+.+....+++..+...+.++..+.... ++ .+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 35688899999999999999999999998874 456899999998888999999999999987765321 22 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
....+.++...+++..|...|-.++
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 3444555566778888777776653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.00 E-value=3 Score=48.44 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-CChH----HHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS-PGLL----EAI 463 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~-P~~~----~~~ 463 (1169)
..+..+|.++.+.|+++.|.++|.++..... ....++++...++....+++..+...+.++..... .++. .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566777777777777777777777665331 12345555555666666666666666666521111 1111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
...+.+....++|..|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 333333444455666665555555444
|
| >3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=83.85 E-value=15 Score=35.54 Aligned_cols=113 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred hhHhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcC----CCcceeEeeeeccccCCCce
Q 001060 722 QVGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL----NFTAIEIKTINSLGSWNGGV 796 (1169)
Q Consensus 722 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l----~~~~~~i~~~d~q~~~~~~i 796 (1169)
+--...+..|+..++ .+.+.|..+|.++..+. +........|.++|.+.+..+ +...+.+..+.. .++.
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~--~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~---~~gd- 93 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLL--PTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRL---LDDD- 93 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEE--CSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE---CSSS-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEe--cCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEE---ecCC-
Confidence 334667888998887 79999999999975543 321111223444555454432 211122223322 2222
Q ss_pred EEEEEEEEEe-----cCccccceeEEEEEEEeeCCeEEEEcceEEeccC
Q 001060 797 LVMVSGSVKT-----KEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 840 (1169)
Q Consensus 797 lv~v~G~~~~-----~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 840 (1169)
+.+|+|.+.. ++.........|+++...+++|.|..+-+..+.+
T Consensus 94 ~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~ 142 (156)
T 3h51_A 94 SAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPE 142 (156)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred eEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCc
Confidence 3334554332 2211123346677777889999999988866543
|
| >2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.24 E-value=2 Score=38.25 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=45.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
+-+|-|+.||+.+|++++.+.++..=.+.... .+..+.+- ...+-|+|.|.+.+++..-.+. +|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-FFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECC-CCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35799999999999998766655433322111 11111111 1235789999999999988877 7777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.03 E-value=15 Score=39.07 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=48.1
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.+.|++++|+..+...++.. |.+..+...+.++++-.|++++|.+-++.+ .+++|.....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~-a~l~p~~~~~ 67 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS-IKLFPEYLPG 67 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCGGGHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCchhhHH
Confidence 345678888888888888776 788888888888888888888888888876 6778876544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.67 E-value=9.9 Score=48.26 Aligned_cols=95 Identities=5% Similarity=-0.109 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----hccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLI----ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~----~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
..+..+|+.+-+.|+.++|..+|++... -+.-+...|.-++.-+.+.|++++|.++|++..+.-..-+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4567777777778888888888755332 245566777777777777888888888887776544334555666666
Q ss_pred HHHHHcCC-HHHHHHHHHHH
Q 001060 433 RFKEQNGD-IDGARAAYQLV 451 (1169)
Q Consensus 433 ~~~e~~g~-~~~A~~~~~~a 451 (1169)
..+.+.|+ .++|..+|++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 66777776 36677777765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.62 E-value=3.8 Score=46.80 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001060 362 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418 (1169)
Q Consensus 362 yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~ 418 (1169)
+++.+...|++.+++..+++++..+|.+..+|..++..|...|+..+|+.+|+++..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666556666666655555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.58 E-value=7.7 Score=49.25 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH---hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHV---FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKH 466 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~---~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~ 466 (1169)
-.+..++..+.+.|++++|..+|.+..+. -..-+...|..+..-+.+.|++++|+++|++... -+.| +.-.|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 35667788888999999999999664321 1123667888888889999999999999998632 2355 45677888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHh
Q 001060 467 ANMERRLGN-LEDAFSLYEQAIAI 489 (1169)
Q Consensus 467 a~~e~r~g~-~e~A~~iy~~Al~~ 489 (1169)
+..+.+.|+ .++|..+|++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 888888887 47888999888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1169 | ||||
| d1gy7a_ | 121 | d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {B | 1e-32 | |
| d1gy6a_ | 125 | d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {R | 2e-32 | |
| d1zo2a1 | 117 | d.17.4.2 (A:10-126) Nuclear transport factor-2 (NT | 2e-31 | |
| d1jkga_ | 139 | d.17.4.2 (A:) NTF2-related export protein 1 (p15) | 3e-29 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 4e-29 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-18 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 7e-07 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 8e-04 | |
| d2qiya1 | 139 | d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {B | 3e-26 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d2cq4a1 | 101 | d.58.7.1 (A:132-232) RNA binding protein 23 {Human | 2e-10 | |
| d1x5ta1 | 83 | d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu | 3e-10 | |
| d2cpha1 | 94 | d.58.7.1 (A:454-547) Probable RNA-binding protein | 4e-10 | |
| d1x0fa1 | 75 | d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 | 6e-10 | |
| d1h2vz_ | 93 | d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro | 1e-09 | |
| d1l3ka1 | 84 | d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN | 1e-09 | |
| d1x4ba1 | 103 | d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle | 2e-09 | |
| d1uawa_ | 77 | d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax | 2e-09 | |
| d1b7fa2 | 85 | d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil | 2e-09 | |
| d1hd0a_ | 75 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 4e-09 | |
| d2msta_ | 75 | d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 | 5e-09 | |
| d1b7fa1 | 82 | d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil | 7e-09 | |
| d1cvja1 | 80 | d.58.7.1 (A:11-90) Poly(A)-binding protein {Human | 8e-09 | |
| d2adba1 | 108 | d.58.7.1 (A:177-284) Polypyrimidine tract-binding | 1e-08 | |
| d1fjca_ | 96 | d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice | 2e-08 | |
| d1no8a_ | 78 | d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu | 3e-08 | |
| d1whwa_ | 99 | d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm | 3e-08 | |
| d2f9da1 | 114 | d.58.7.1 (A:12-125) Pre-mRNA branch site protein p | 3e-08 | |
| d2cqga1 | 90 | d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD | 4e-08 | |
| d1fxla1 | 82 | d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom | 5e-08 | |
| d1wf0a_ | 88 | d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 { | 6e-08 | |
| d2cpea1 | 101 | d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma | 6e-08 | |
| d1l3ka2 | 79 | d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 | 6e-08 | |
| d1u2fa_ | 90 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 7e-08 | |
| d2cqba1 | 89 | d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer | 7e-08 | |
| d1x5ua1 | 93 | d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu | 8e-08 | |
| d2cqda1 | 103 | d.58.7.1 (A:1-103) RNA-binding region containing p | 8e-08 | |
| d1x4aa1 | 95 | d.58.7.1 (A:9-103) Splicing factor, arginine/serin | 9e-08 | |
| d2cpfa1 | 85 | d.58.7.1 (A:362-446) Probable RNA-binding protein | 1e-07 | |
| d2cqca1 | 83 | d.58.7.1 (A:109-191) Arginine/serine-rich splicing | 1e-07 | |
| d2disa1 | 96 | d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 { | 2e-07 | |
| d1fxla2 | 85 | d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho | 2e-07 | |
| d2ghpa3 | 86 | d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici | 2e-07 | |
| d2cpya1 | 103 | d.58.7.1 (A:536-638) RNA-binding protein 12 {Human | 3e-07 | |
| d2cq0a1 | 90 | d.58.7.1 (A:231-320) Eukaryotic translation initia | 4e-07 | |
| d2cqia1 | 90 | d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa | 4e-07 | |
| d1u6fa1 | 139 | d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa | 5e-07 | |
| d1wf2a_ | 98 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 5e-07 | |
| d2cpja1 | 86 | d.58.7.1 (A:65-150) Non-POU domain-containing octa | 8e-07 | |
| d2cpda1 | 86 | d.58.7.1 (A:223-308) APOBEC1 stimulating protein { | 1e-06 | |
| d2ghpa2 | 75 | d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin | 1e-06 | |
| d1zh5a2 | 85 | d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo | 1e-06 | |
| d1x4ga1 | 96 | d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s | 2e-06 | |
| d1cvja2 | 89 | d.58.7.1 (A:91-179) Poly(A)-binding protein {Human | 3e-06 | |
| d2cqha1 | 80 | d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is | 3e-06 | |
| d2cq3a1 | 93 | d.58.7.1 (A:110-202) RNA-binding protein 9 {Human | 4e-06 | |
| d1wi8a_ | 104 | d.58.7.1 (A:) Eukaryotic translation initiation fa | 5e-06 | |
| d1nu4a_ | 91 | d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo | 5e-06 | |
| d1x4ha1 | 98 | d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse ( | 6e-06 | |
| d2u2fa_ | 85 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 7e-06 | |
| d1weza_ | 102 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 1e-05 | |
| d1fjeb1 | 91 | d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesoc | 1e-05 | |
| d1p1ta_ | 104 | d.58.7.1 (A:) Cleavage stimulation factor, 64 kda | 2e-05 | |
| d1rk8a_ | 88 | d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr | 2e-05 | |
| d1wwha1 | 81 | d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus mu | 2e-05 | |
| d2adca1 | 109 | d.58.7.1 (A:335-443) Polypyrimidine tract-binding | 3e-05 | |
| d2ghpa1 | 81 | d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici | 3e-05 | |
| d2cqpa1 | 86 | d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous | 4e-05 | |
| d1x5sa1 | 90 | d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote | 6e-05 | |
| d1wexa_ | 104 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 6e-05 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | d.58.7.3 (A:) 2e-04 | ||
| d2adca2 | 88 | d.58.7.1 (A:444-531) Polypyrimidine tract-binding | 2e-04 | |
| d1wela1 | 112 | d.58.7.1 (A:412-523) RNA-binding protein 12 {Human | 2e-04 | |
| d2j01p1 | 146 | c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T | 2e-04 | |
| d2cpza1 | 102 | d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin | 3e-04 | |
| d3begb1 | 87 | d.58.7.1 (B:121-207) Splicing factor, arginine/ser | 3e-04 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 3e-04 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 7e-04 | |
| d1wg5a_ | 104 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 4e-04 | |
| d2gycj1 | 140 | c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E | 4e-04 | |
| d2cpxa1 | 102 | d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 | 8e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1x4ea1 | 72 | d.58.7.1 (A:8-79) RNA-binding motif, single-strand | 0.002 | |
| d1wg4a_ | 98 | d.58.7.1 (A:) Splicing factor, arginine/serine-ric | 0.002 | |
| d1wg1a_ | 88 | d.58.7.1 (A:) Probable RNA-binding protein KIAA157 | 0.002 | |
| d1whya_ | 97 | d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb | 0.003 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 |
| >d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 120 bits (303), Expect = 1e-32
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
+ F YY + Y + S + T DI ++SL F +
Sbjct: 4 TLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF----ETSQLQGAKDIVEKLVSLPFQKV 59
Query: 782 --EIKTINS-LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
I T+++ S G VLVM++G + E ++F Q F L P Y+V NDIF
Sbjct: 60 QHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIF 116
|
| >d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 119 bits (301), Expect = 2e-32
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
Q+GS F+ YYQ+ + Y DAS + + I + SL F I
Sbjct: 7 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW----EGQQFQGKAAIVEKLSSLPFQKI 62
Query: 782 --EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839
I + + + ++ MV G +K E F Q F L + ND+F
Sbjct: 63 QHSITAQDHQPTPDSCIISMVVGQLKADE-DPIMGFHQMFLLKNINDAWVCTNDMFRLAL 121
Query: 840 EE 841
Sbjct: 122 HN 123
|
| >d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Cryptosporidium parvum [TaxId: 5807]
Score = 116 bits (293), Expect = 2e-31
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
Q+G FV YYQ Q + Y S + D +I + SLNF +
Sbjct: 3 QIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED----TQFQGQANIVNKFNSLNFQRV 58
Query: 782 --EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIF 835
EI ++ S N G +V V+G V+ + + KF Q F L P G+ + ND+F
Sbjct: 59 QFEITRVDCQPSPNNGSIVFVTGDVRIDD-GQPLKFSQVFNLMPSGNGGFMIFNDLF 114
|
| >d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-related export protein 1 (p15) species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 3e-29
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 721 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA 780
+ FV YY + ++ L+ + Y ++++ + + S + L +
Sbjct: 13 CRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW----NGNAVSGQESLSEFFEMLPSSE 68
Query: 781 IEIKTINS------LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG----YFV 830
+I ++ VLV++ GSVK + ++R F Q F L Q + +
Sbjct: 69 FQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKI 127
Query: 831 LNDIFHFLD 839
+D F F D
Sbjct: 128 ASDCFRFQD 136
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 117 bits (292), Expect = 4e-29
Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 40/313 (12%)
Query: 350 PLSVTELENWHNYLDFIE--------RDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 401
P +++ W Y+ + + + +V+ YE+CL+ ++P+ W +E
Sbjct: 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61
Query: 402 ASG--------------SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447
S D A N RA +K+ ++ A ++E + +
Sbjct: 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121
Query: 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507
Y + I++ RR ++ ++++A + + H +Y +
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH------VYVTAA 175
Query: 508 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567
+ S++ A +I L + A I + S + + L ++ L S
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL---NEDNNTRVLFERVLTS 232
Query: 568 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF---LPHRSTSELRKRH 624
S P + E+ FL F GD I K E R F + T+ L R+
Sbjct: 233 GSLPPE-----KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 287
Query: 625 A-EDFLASERAKM 636
D +++
Sbjct: 288 KFMDLYPCSASEL 300
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.3 bits (207), Expect = 5e-18
Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 30/276 (10%)
Query: 138 WKKYADHE--------ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----------- 178
WKKY E + +V+ YE+ + + + DIW +
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70
Query: 179 --AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236
N + ++ER ++ + + L+ Y +YE + ++ +V IY R+L
Sbjct: 71 GDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 237 PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 296
+ + +FA R +++ + A A E D
Sbjct: 129 EDIDPTLVYIQYMKFA--RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-K 185
Query: 297 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 356
K GL + ++ +Y+ + E ++ + FE + P E+
Sbjct: 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL--PPEKSGEI 243
Query: 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 392
W +L F GD ++K+ +R A E
Sbjct: 244 --WARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.4 bits (119), Expect = 7e-07
Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 30/304 (9%)
Query: 209 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEV-- 266
+W KYI++E E+ R +++ + L L ++
Sbjct: 10 MWKKYIQWEKSNPLR----------TEDQTLITKRVMFAYE-----QCLLVLGHHPDIWY 54
Query: 267 DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 326
+AA ++ N + +A + +S L + L A + +
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA---DYEES 111
Query: 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 386
+++ + + + + Y+ F R ++++
Sbjct: 112 RMKYEKVHSIYNRLLAIEDIDPTLV-------YIQYMKFARRAEGIKSGRMIFKKAREDA 164
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446
++ L + +PE L + + + R
Sbjct: 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224
Query: 447 AYQLVHTE--TSPGLLEAIIKH-ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503
++ V T P I E +G+L + ++ + + + +L
Sbjct: 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV 284
Query: 504 AQYS 507
+Y
Sbjct: 285 DRYK 288
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 8e-04
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 6/136 (4%)
Query: 89 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 148
+ + + E + ++++ L ++ Y Y D+ + +
Sbjct: 158 KKAREDARTRHHVYVTAALM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 216
Query: 149 GSMDKVVEVYERAVQGVTYSVD----IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204
+ ++ER + + + IW + F N GD +I ++ +R +Y
Sbjct: 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN-IGDLASILKVEKRRFTAFREEY 275
Query: 205 LSFPLWDKYIEYEYMQ 220
Y++M
Sbjct: 276 EGKETALLVDRYKFMD 291
|
| >d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: UBP3-associated protein BRE5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (256), Expect = 3e-26
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 20/138 (14%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASS-----------MLD 768
+ F+ YY+ ++ P + FY+ + + + S + +
Sbjct: 3 VQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGREN 62
Query: 769 IHSLVISLNFTAIEIKT------INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLA 822
I+ + +K G + +L+M +G + KF QTF L
Sbjct: 63 INKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTG-TPVYKFCQTFILL 121
Query: 823 PQEKG--YFVLNDIFHFL 838
P G + + NDI F+
Sbjct: 122 PSSNGSTFDITNDIIRFI 139
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 1e-10
Identities = 55/391 (14%), Positives = 109/391 (27%), Gaps = 28/391 (7%)
Query: 105 LLEETEKLAQD-NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 163
+E + Q + R + P G + + +D+ A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 164 GVTYSVDIWLH----YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM 219
+ + + Y L + G L+ L +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 220 QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSE 279
Q S + E A + L + T A + +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 280 TGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 339
G A + A + A + L+ ++ +A
Sbjct: 182 QGEIWLAIHHFEK--AVTLDPNFLDAYINLGNVLK-----EARIFDRAVAA--------- 225
Query: 340 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399
Y LS N G + + Y R + ++P+ +
Sbjct: 226 -----YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 459
++ GS+ A + A + ++ A +EQ G+I+ A Y+ E P
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKA-LEVFPEF 338
Query: 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490
A A++ ++ G L++A Y++AI I
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (137), Expect = 2e-10
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1024 DSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEF 1083
D+L +E + ++V+ L + + ++E+ F G+++ D + +R A+VEF
Sbjct: 9 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEF 67
Query: 1084 EDISGVQNAIQASPIQLAGRQVYIEERRP 1112
+I V AI + +L G + ++ +
Sbjct: 68 CEIQSVPLAIGLTGQRLLGVPIIVQASQA 96
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 3e-10
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NL + + + F FG I +R+ YAF+ F AI+A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 1096 -SPIQLAGRQVYIE--ERRPNTG 1115
+ L R + + ++ + G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.3 bits (133), Expect = 4e-10
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ VRN+P EI E F FG +K + + + FV+F + A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 1094 QASP--IQLAGRQVYIE 1108
A L GR++ +E
Sbjct: 69 NALCHSTHLYGRRLVLE 85
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 6e-10
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V L +I E F FG ++ + K + F+ F++ V+ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESI-ELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 1096 SPIQLAGRQVYIE 1108
+ + I+
Sbjct: 61 KYHNVGLSKCEIK 73
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (130), Expect = 1e-09
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++YV NL T +I E F G IK + ++ + FVE+ + +NA+
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKI-IMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 1094 QA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1125
+ + +L R + + G + GR
Sbjct: 67 RYINGTRLDDRIIRTDW--------DAGFKEGR 91
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 1e-09
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ +++ +++ L T + F+ +G + D V +R+ + FV + +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 1089 VQNAIQASPIQLAGRQVYIEE 1109
V A+ A P ++ GR V +
Sbjct: 61 VDAAMNARPHKVDGRVVEPKR 81
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 2e-09
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
++ + + +++ L T + ++ +G++ V +R+ + FV F ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDC-VVMRDPASKRSRGFGFVTFSSMAE 74
Query: 1089 VQNAIQASPIQLAGRQVYIEERRP 1112
V A+ A P + GR V +
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVA 98
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.7 bits (126), Expect = 2e-09
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ L T + E F FG +K + +R+ + FV F D +GV +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 1096 SPIQLAGRQV 1105
S +L + +
Sbjct: 62 SRHELDSKTI 71
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 53.0 bits (127), Expect = 2e-09
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++YV NLP T+T +++ F +G I +R++ AFV + Q AI
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQK-NILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 1095 A---SPIQLAGRQVYIE 1108
A + + + +
Sbjct: 67 ALNNVIPEGGSQPLSVR 83
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (125), Expect = 4e-09
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ L T ++++ F FG + D + + FV F++ V +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEV-VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 1096 SPIQLAGRQVYIEE 1109
+L G+ + +
Sbjct: 61 KEHKLNGKVIDPKR 74
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.0 bits (124), Expect = 5e-09
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V L T +++ F+ FG++ + + ++ + FV FE V+ +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDA-MLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 1096 SPIQLAGRQVYIEE 1109
++ + V ++
Sbjct: 61 HFHEINNKMVECKK 74
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 51.5 bits (123), Expect = 7e-09
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++ V LP +T E+ F+ G I +R+ K YAFV+F Q AI+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPI-NTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 1095 A-SPIQLAGRQVYIEERRP 1112
+ I + +++ + RP
Sbjct: 63 VLNGITVRNKRLKVSYARP 81
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (123), Expect = 8e-09
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
S+YV +L VT + E+F G I R+ + YA+V F+ + + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPI-LSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
Query: 1095 A-SPIQLAGRQVYIE 1108
+ + G+ V I
Sbjct: 61 TMNFDVIKGKPVRIM 75
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 1e-08
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ V + V NL VT + + F FG + F +N + A +++ D
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ-----FQALLQYADPVSA 58
Query: 1090 QNAIQA---SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1125
Q+A + I A + I+ + + + + R
Sbjct: 59 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSR 97
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 50.4 bits (120), Expect = 2e-08
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 1012 SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK 1071
SHM E D +++ +NL +T E++E F++ I+ +
Sbjct: 1 SHMLE------DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQ 48
Query: 1072 DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
D A++EF+ + + ++ ++ GR V + + +GG RG
Sbjct: 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY------TGEKGGTRG 96
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.5 bits (118), Expect = 3e-08
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V NL V+ +I+E F FG +K V + + A V FE + A++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKK--AAVHYDRSGRSLGTADVHFERKADALKAMKQ 60
Query: 1096 -SPIQLAGRQVYIE 1108
+ + L GR + I+
Sbjct: 61 YNGVPLDGRPMNIQ 74
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.1 bits (119), Expect = 3e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++VRNL T + ++E+ F +G + + + + +AFV F A
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPL-SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
GR +++ ++ G G
Sbjct: 70 VDGQVFQGRMLHVLPSTIKKEASQSGPSSG 99
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 3e-08
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +Y+RNLP +TA E+ + F +G I+ V A+V +EDI +NA
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR----GTAYVVYEDIFDAKNAC 63
Query: 1094 QA-SPIQLAGRQVYIEERRPN 1113
S + R + + N
Sbjct: 64 DHLSGFNVCNRYLVVLYYNAN 84
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 4e-08
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+ + V LP T +++E F FG + ++ K + FV F +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 1092 AIQASPIQLAGRQVYIEERRP 1112
+ + + GR +
Sbjct: 66 VMSQRHM-IDGRWCDCKLPNS 85
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 5e-08
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++ V LP +T E F + G I+ VR++ + Y FV + D + AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESC-KLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 1095 A-SPIQLAGRQVYIEERRPN 1113
+ ++L + + + RP+
Sbjct: 63 TLNGLRLQTKTIKVSYARPS 82
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 6e-08
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
V+V +T E+ E F +G + +AFV F D Q+
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGD------VMDVFIPKPFRAFAFVTFADDQIAQSLC 59
Query: 1094 QASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ + G V+I P +++ G G
Sbjct: 60 G-EDLIIKGISVHISNAEPK-HNSNSGPSSG 88
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 6e-08
Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV-------FVRNRKDVVGVCYAFV 1081
++ + ++YV+ L +VT ++ + F+ G +K + +++ A V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 1082 EFEDISGVQNAIQA-SPIQLAGRQVYIEERRPN 1113
+ED + A++ G ++ + R
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 6e-08
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
VK ++V + + + F+ + + +R +AFV F+D V
Sbjct: 2 VKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 1093 IQASPIQLAGRQVYIEE 1109
+ + G + +
Sbjct: 61 VIQKYHTVNGHNCEVRK 77
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 7e-08
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ +YV N+P +T + + F R+ G V + +AF+EF +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 1090 QNAIQASPIQLAGRQVYIEERRPN 1113
A+ I G+ + I RRP+
Sbjct: 62 TQAMAFDGIIFQGQSLKI--RRPH 83
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 7e-08
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ +YV L V + F FG I D + + +AFVEFE AI
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 1094 QA-SPIQLAGRQVYIEERRP 1112
+ +L GR + + +P
Sbjct: 65 DNMNESELFGRTIRVNLAKP 84
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 8e-08
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ + +VYV L V+ + E F G + + ++R Y FVEF
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPN 1113
AI+ I+L G+ + + + +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAH 89
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 8e-08
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++V LP T + + F+ FG I+ V + +R+ Y FV D + + A
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEA-VVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 1094 QASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
+ + GR+ + G+ R + G G
Sbjct: 70 KDPNPIIDGRKANVNLAYL--GAKPRSLQTGFAIG 102
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 9e-08
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV NLP + +IE+ F +G I+ + + G +AFVEFED ++A+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIR----DIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 72
Query: 1096 -SPIQLAGRQVYIEERRPNTGS 1116
G ++ +E R G+
Sbjct: 73 RDGYDYDGYRLRVEFPRSGRGT 94
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.5 bits (115), Expect = 1e-07
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1037 YVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAIQ 1094
+++NL + T ++ F G IK + + K V + + FVE++ Q A++
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 1095 A-SPIQLAGRQVYIEERRPNT 1114
+ G ++ + T
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (114), Expect = 1e-07
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ V L T ++ E F +G I D V +++ +AFV FE++ + A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 1094 QA-SPIQLAGRQVYI 1107
+ + ++L GR++ +
Sbjct: 69 ERANGMELDGRRIRV 83
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 2e-07
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV-CYAFVEFEDISGVQNAIQ 1094
+++ +P EI EE D + + D + +AFVE+E A +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 1095 A---SPIQLAGRQVYIEERRP 1112
IQL G Q+ ++ P
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEP 84
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 2e-07
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+YV LP T+T E+E+ F +GRI + ++ V F+ F+ + AI+
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1032 EVKSVYVRNLPSTVTAFE-IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
E + + +RNL + + + E F+ FG I+ + ++ C AF+ FE+ +
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 1091 NAIQASPIQLAGRQVYIE--ERRP 1112
A+Q + L R++ + +++P
Sbjct: 63 RALQMNRSLLGNREISVSLADKKP 86
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 3e-07
Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 1030 EGEVKS----VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED 1085
EG+V S ++ N+P ++T ++ + + + + V V + G+ A V+F++
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKN 59
Query: 1086 ISGVQNAIQASPIQLAGRQVYI-----EERRPNTGSTSRGGRRG 1124
+ + + +L GR+ ++ E+ R + G+ G
Sbjct: 60 EDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+ ++ V NL +++E F+ FG I +++ +AF+ F
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSI-SRIYLAKDKTTGQSKGFAFISFHRREDAAR 65
Query: 1092 AIQA-SPIQLAGRQVYIEERRPNT 1114
AI S + +E +P+T
Sbjct: 66 AIAGVSGFGYDHLILNVEWAKPST 89
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
D+G+ +++YV NL VT I + F G K + Y FVEF +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS---CKMITEHTSNDPYCFVEFYEHRD 60
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRP 1112
A+ A + ++ G++V +
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATT 85
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Score = 48.0 bits (113), Expect = 5e-07
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ ++++ V +P+TV ++ + F+ + V +R+ Y FV+F+ S
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSS 96
Query: 1089 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
Q AI + + +++ + G G G G
Sbjct: 97 AQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNG 137
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (111), Expect = 5e-07
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 1036 VYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
V++ NL V ++E F +G+I V +AFV++ + + A+
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIV---------GCSVHKGFAFVQYVNERNARAAVA 68
Query: 1095 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1128
+AG+ + I + R G G
Sbjct: 69 GEDGRMIAGQVLDINLAAEP-----KVNRSGPSSG 98
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (108), Expect = 8e-07
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V NLP +T E+ + F+ +G+ + + F+ E + + A
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-------GFGFIRLETRTLAEIAKVE 63
Query: 1096 -SPIQLAGRQVYIEERRPNTGST 1117
+ L G+Q+ + + T
Sbjct: 64 LDNMPLRGKQLRVRFACHSASLT 86
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 1e-06
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
VK +YVRNL + + IE+EF N + V YAFV F +
Sbjct: 7 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------DYAFVHFSNREDAVE 59
Query: 1092 AIQA-SPIQLAGRQVYIEERRP 1112
A++A + L G + + +P
Sbjct: 60 AMKALNGKVLDGSPIEVTLAKP 81
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+V V+NLP + ++ + F++ G I V +A +EF G AI
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA---DSLKKNFRFARIEFARYDGALAAIT 58
Query: 1095 ASPIQLAGRQVYIEE 1109
+ + ++ +
Sbjct: 59 KTHKVVGQNEIIVSH 73
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
++ + +SVY++ P+ T +I+E ++ G++ + K FV F+ I
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA--FKGSIFVVFDSIES 59
Query: 1089 VQNAIQASPIQLAGRQVYIE 1108
+ ++ + + I
Sbjct: 60 AKKFVETPGQKYKETDLLIL 79
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (107), Expect = 2e-06
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
+VY + S +T + + F FG+I + Y+FV F +AI
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIM-------EIRVFPEKGYSFVRFSTHESAAHAIV 72
Query: 1095 A-SPIQLAGRQVYIEERRPNTGST 1117
+ + + G V + + T
Sbjct: 73 SVNGTTIEGHVVKCYWGKESPDMT 96
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 3e-06
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
V +++++NL ++ + + F FG I V Y FV FE + A
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---SKGYGFVHFETQEAAERA 64
Query: 1093 IQA-SPIQLAGRQVYIEERRP 1112
I+ + + L R+V++ +
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKS 85
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 3e-06
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+Y+ NL VTA ++ + F + G + YAFV++ D + AI+
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPL-AGQVLLKS------GYAFVDYPDQNWAIRAIET 56
Query: 1096 --SPIQLAGRQVYIEERRP 1112
++L G+ + ++
Sbjct: 57 LSGKVELHGKIMEVDYSVS 75
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 4e-06
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
+ K ++V N+P ++ + F FG+I + + FV FE+ +
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD---VEIIFNERGSKGFGFVTFENSAD 63
Query: 1089 VQNAIQA-SPIQLAGRQVYIE--ERRPNT 1114
A + + GR++ + R T
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNATARVMT 92
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 5e-06
Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++ NLP VT I+E F+ + + + + EFED+ + +A+
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPE-RLKGFGYAEFEDLDSLLSALSL 76
Query: 1096 SPIQLAGRQVYIE--ERRPNTGSTSRGG 1121
+ L +++ ++ ++ + S G
Sbjct: 77 NEESLGNKRIRVDVADQAQDKDSGPSSG 104
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 5e-06
Identities = 12/87 (13%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++Y+ NL + E+++ + + + + AFV F+++S NA+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 1094 QA-SPIQLAGRQVYIEERRPNTGSTSR 1119
++ + + I+ + ++ ++
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDIIAK 90
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (102), Expect = 6e-06
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
D E K+V++RNL + E Q F V + AF +F
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 1089 VQNAIQASPIQLAGRQVYIEERR 1111
Q + A+ ++ G + ++ R+
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQ 85
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (101), Expect = 7e-06
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ LP+ + +++E +FG + V++ + YAF E+ DI+ AI
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 1096 -SPIQLAGRQVYIEERRPN 1113
+ +QL +++ ++
Sbjct: 63 LNGMQLGDKKLLVQRASVG 81
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
V++R LP T +I F ++ + + A VEF A+
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV---TGEADVEFATHEDAVAAMA 73
Query: 1095 ASPIQLAGRQ--VYIEERRPNTGSTSRGG 1121
+ R +++ +GS G
Sbjct: 74 KDKANMQHRYVELFLNSTAGTSGSGPSSG 102
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 1012 SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK 1071
SHM E G + ++++ NL + E++ V + +
Sbjct: 2 SHMVE----------GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL--AVVDVR 49
Query: 1072 DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112
+ +V+FE ++ A++ + +++ G ++ +E+ +
Sbjct: 50 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+ ++SV+V N+P T ++++ F V +R+ Y F E++D
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEV-GPVVSFRLVYDRETGKPKGYGFCEYQDQETA 63
Query: 1090 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1129
+A++ + + +GR + ++ ++ + G G+
Sbjct: 64 LSAMRNLNGREFSGRALRVDNAASE---KNKEELKSLGTGA 101
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
E ++V ++ EI+E+F ++G IK +R+ YA VE+E
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI-HLNLDRRTGFSKGYALVEYETHKQALA 64
Query: 1092 AIQA-SPIQLAGRQVYIE 1108
A +A + ++ G+ + ++
Sbjct: 65 AKEALNGAEIMGQTIQVD 82
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (97), Expect = 2e-05
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V V P + I +F +G I + + ++ + A+
Sbjct: 7 VTVFGFPQASAS-YILLQFAQYGNIL----KHVMSNTG---NWMHIRYQSKLQARKALSK 58
Query: 1096 SPIQLAGR 1103
Sbjct: 59 DGRIFGES 66
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 3e-05
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 1034 KSVYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+ V NL P VT + F +G ++ + + A V+ D + Q A
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK------ENALVQMADGNQAQLA 56
Query: 1093 IQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRG 1143
+ + +L G+ + I + R G+ +G ++P RF G
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 108
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (96), Expect = 3e-05
Identities = 8/78 (10%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ N P + T I + Q+ + + + + + +A+++ + ++
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALS-IRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 1096 -SPIQLAGRQVYIEERRP 1112
+ +++ G + + P
Sbjct: 63 LNGLKIEGYTLVTKVSNP 80
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.2 bits (96), Expect = 4e-05
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V+N+P TV+ EI + F + I V ++ + + A V FE A+
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 1096 -SPIQLAGRQVYIE 1108
+ + R+V +
Sbjct: 71 LNDRPIGSRKVKLV 84
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 6e-05
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
++V L +E+ F + + V V++R+ + FV FE+I ++A+ A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTS 1118
+ + GRQ+ +++ ++ + S
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.3 bits (96), Expect = 6e-05
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
V+VR L +V ++ E + FG I + A VEFE+I + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-------RQALVEFENIDSAKECV 68
Query: 1094 QA---SPIQLAGRQVYI------EERRPNTGSTSRG 1120
P+ +AG+Q + RP S G
Sbjct: 69 TFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
V V ++ E + +G ++ + N D V +V+F +
Sbjct: 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDNLGD-HLVGNVYVKFRREEDAEK 83
Query: 1092 AIQA-SPIQLAGRQVYIE 1108
A+ + G+ ++ E
Sbjct: 84 AVIDLNNRWFNGQPIHAE 101
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 8/82 (9%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++++ N+P +V+ +++ F + G + F + + A ++ + A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-----KMALIQMGSVEEAVQAL 65
Query: 1094 QASPIQ--LAGRQVYIEERRPN 1113
+ + +
Sbjct: 66 IDLHNHDLGENHHLRVSFSKST 87
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
VY++ LP + + F+ ++ FVEF + + + A+
Sbjct: 21 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA-TGEGFVEFRNEADYKAALCR 79
Query: 1096 SPIQLAGRQVYIE 1108
+ R + +
Sbjct: 80 HKQYMGNRFIQVH 92
|
| >d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribosomal proteins L15p and L18e superfamily: Ribosomal proteins L15p and L18e family: Ribosomal proteins L15p and L18e domain: Ribosomal protein L15 (L15p) species: Thermus thermophilus [TaxId: 274]
Score = 40.4 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 1111 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNGFYQ 1165
RPN G+ R R GRG GS G+ RG ++ GG + R G
Sbjct: 3 RPNPGANKRRKRVGRGPGSG-----HGKTATRGHKGQKSRSGGLKDPRRFEGGRS 52
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ +LP ++ + F FG + VF+ + + + C+ FV +++ Q AIQ+
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-LSKCFGFVSYDNPVSAQAAIQS 79
Query: 1096 -SPIQLAGRQVYIEERRPNTGS 1116
+ Q+ +++ ++ +R S
Sbjct: 80 MNGFQIGMKRLKVQLKRSKNDS 101
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V V LP + + ++ ++ R D + +D VEF + A++
Sbjct: 3 VVVSGLPPSGS----WQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRK 54
Query: 1096 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGR 1127
+ + R R GR R
Sbjct: 55 LDNTKFRSHEGETAYIRVKV-DGPRSPSYGRSR 86
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+++ +++ L T + F+ +G + D V +R+ + FV + + V
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 1092 AIQASPIQ 1099
A+ A P +
Sbjct: 64 AMNARPHK 71
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
K ++V + + + F+ +G+I + +R +AFV F+D V +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKI-EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Query: 1094 QASPIQLAGRQVYIEERRP 1112
+ G + +
Sbjct: 157 IQKYHTVNGHNCEVRKALS 175
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1088
D V +R LP + EI + F I P+G+ + AFV+F
Sbjct: 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 1089 VQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1124
+ A++ ++ R + I + TS G G
Sbjct: 70 AEKALKKHKERIGHRYIEIFKSSRAEVRTS-GPSSG 104
|
| >d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribosomal proteins L15p and L18e superfamily: Ribosomal proteins L15p and L18e family: Ribosomal proteins L15p and L18e domain: Ribosomal protein L15 (L15p) species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (92), Expect = 4e-04
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 1111 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNGFYQR 1166
P GS G R GRG GS G+ GGRG +G G R G
Sbjct: 4 SPAEGSKKAGKRLGRGIGSG-----LGKTGGRG-HKGQKSRSGGGVRRGFEGGQMP 53
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
K +Y++NL VT ++ F F AF+ F + A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEK-KGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 1094 QA-SPIQLAGRQVYIEERRP 1112
+ +L G+ + IE +
Sbjct: 78 HLVNGYKLYGKILVIEFGKN 97
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/132 (10%), Positives = 29/132 (21%), Gaps = 5/132 (3%)
Query: 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 417
W N L +G + ++L + A ++ + G + A L +
Sbjct: 2 QWKNAL----SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQL-MQS 56
Query: 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477
+ L + N+ + E
Sbjct: 57 IKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116
Query: 478 DAFSLYEQAIAI 489
L Q +
Sbjct: 117 QVSELALQIEEL 128
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+Y+R L T ++ + Q + + ++ Y FV+F+ S Q A+ A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 59
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V V LP + + ++ ++ R D + +KD VE+ ++ A++
Sbjct: 18 VLVSGLPPSGS----WQDLKDHMREAGDVCYADVQKD----GMGMVEYLRKEDMEYALRK 69
Query: 1096 -SPIQLAGRQV---YIEERRPNTGSTSRG 1120
+ + YI + S G
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSSGPSSG 98
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+ V+NLP E+ + +++ + AFV + QNAI
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDL--------KYCYVDRNKRTAFVTLLNGEQAQNAI 57
Query: 1094 QA-SPIQLAGRQVYIEERRPNTGSTS 1118
Q G+ + ++ + + S
Sbjct: 58 QMFHQYSFRGKDLIVQLQPTDALLCS 83
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (83), Expect = 0.003
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
++V L + + EF FG I+ + +A++++E + Q A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-------SFAYIQYESLDAAQAAC 70
Query: 1094 QA---SPIQLAGRQVYIEERRPNTGS 1116
P+ R++ ++ + S
Sbjct: 71 AKMRGFPLGGPDRRLRVDFAKSGPSS 96
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 18/134 (13%), Positives = 42/134 (31%)
Query: 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 417
L + D F +V +L+ + + ++ L + + S +
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 197
Query: 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477
+ V+ + NG+ A E PG + + LG
Sbjct: 198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257
Query: 478 DAFSLYEQAIAIEK 491
+A + +A+ +++
Sbjct: 258 EAVEHFLEALNMQR 271
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1169 | |||
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1gy6a_ | 125 | Nuclear transport factor-2 (NTF2) {Rat (Rattus nor | 99.95 | |
| d1gy7a_ | 121 | Nuclear transport factor-2 (NTF2) {Baker's yeast ( | 99.95 | |
| d1jkga_ | 139 | NTF2-related export protein 1 (p15) {Human (Homo s | 99.94 | |
| d1zo2a1 | 117 | Nuclear transport factor-2 (NTF2) {Cryptosporidium | 99.94 | |
| d2qiya1 | 139 | UBP3-associated protein BRE5 {Baker's yeast (Sacch | 99.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.8 | |
| d1u6fa1 | 139 | RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId | 99.68 | |
| d2cqda1 | 103 | RNA-binding region containing protein 1 {Human (Ho | 99.66 | |
| d1whwa_ | 99 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.65 | |
| d1l3ka1 | 84 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.65 | |
| d1rk8a_ | 88 | RNA-binding protein 8 {Fruit fly (Drosophila melan | 99.64 | |
| d1b7fa1 | 82 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.64 | |
| d1x4ba1 | 103 | Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu | 99.64 | |
| d2cpza1 | 102 | CUG triplet repeat RNA-binding protein 1 {Human (H | 99.63 | |
| d1h2vz_ | 93 | CBP20, 20KDa nuclear cap-binding protein {Human (H | 99.63 | |
| d2cqba1 | 89 | Peptidyl-prolyl cis-trans isomerase E, N-terminal | 99.63 | |
| d2cq0a1 | 90 | Eukaryotic translation initiation factor 3 subunit | 99.63 | |
| d1hd0a_ | 75 | Heterogeneous nuclear ribonucleoprotein d0 {Human | 99.63 | |
| d1fxla1 | 82 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.62 | |
| d1uawa_ | 77 | Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | 99.62 | |
| d2ghpa3 | 86 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.62 | |
| d2cqga1 | 90 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.62 | |
| d1x5ua1 | 93 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.62 | |
| d1cvja1 | 80 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.62 | |
| d2cq4a1 | 101 | RNA binding protein 23 {Human (Homo sapiens) [TaxI | 99.62 | |
| d2u2fa_ | 85 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.62 | |
| d1x5ta1 | 83 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.61 | |
| d1x0fa1 | 75 | Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s | 99.61 | |
| d1l3ka2 | 79 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.6 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.6 | |
| d2cqca1 | 83 | Arginine/serine-rich splicing factor 10 {Human (Ho | 99.59 | |
| d1x5sa1 | 90 | Cold-inducible RNA-binding protein {Human (Homo sa | 99.59 | |
| d1fjeb1 | 91 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.59 | |
| d2cpha1 | 94 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.58 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.58 | |
| d1wi8a_ | 104 | Eukaryotic translation initiation factor 4B {Human | 99.58 | |
| d1b7fa2 | 85 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.57 | |
| d2cqia1 | 90 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.57 | |
| d2ghpa1 | 81 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.57 | |
| d2cpea1 | 101 | RNA-binding protein EWS {Human (Homo sapiens) [Tax | 99.57 | |
| d1fxla2 | 85 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.56 | |
| d2cq3a1 | 93 | RNA-binding protein 9 {Human (Homo sapiens) [TaxId | 99.56 | |
| d1p1ta_ | 104 | Cleavage stimulation factor, 64 kda subunit {Human | 99.56 | |
| d2msta_ | 75 | Neural RNA-binding protein Musashi-1 {Mouse (Mus m | 99.55 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.55 | |
| d2cpfa1 | 85 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.55 | |
| d1no8a_ | 78 | Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 | 99.55 | |
| d1x4ha1 | 98 | RNA-binding protein 28 {Mouse (Mus musculus) [TaxI | 99.55 | |
| d1zh5a2 | 85 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.54 | |
| d1wg5a_ | 104 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.52 | |
| d1cvja2 | 89 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.51 | |
| d1wf0a_ | 88 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.51 | |
| d1x4aa1 | 95 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.51 | |
| d1weza_ | 102 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.5 | |
| d2cpya1 | 103 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.5 | |
| d1fjca_ | 96 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.49 | |
| d2ghpa2 | 75 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.49 | |
| d1wf2a_ | 98 | Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu | 99.48 | |
| d2cpxa1 | 102 | RNA-binding protein 41, RBM41 {Human (Homo sapiens | 99.48 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2f9da1 | 114 | Pre-mRNA branch site protein p14 {Human (Homo sapi | 99.47 | |
| d2disa1 | 96 | Hypothetical protein FLJ20273 {Human (Homo sapiens | 99.46 | |
| d1x4ga1 | 96 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.46 | |
| d1x5oa1 | 101 | RNA-binding motif, single-stranded-interacting pro | 99.46 | |
| d2cqpa1 | 86 | RNA-binding protein 12 {Mouse (Mus musculus) [TaxI | 99.45 | |
| d2cpda1 | 86 | APOBEC1 stimulating protein {Human (Homo sapiens) | 99.44 | |
| d2cqha1 | 80 | IGF-II mRNA-binding protein 2 isoform A {Human (Ho | 99.44 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.43 | |
| d2bz2a1 | 79 | Negative elongation factor E, NELF-E {Human (Homo | 99.43 | |
| d1wg1a_ | 88 | Probable RNA-binding protein KIAA1579 {Human (Homo | 99.42 | |
| d1wg4a_ | 98 | Splicing factor, arginine/serine-rich 9 (SFRS9) {M | 99.42 | |
| d2adca1 | 109 | Polypyrimidine tract-binding protein {Human (Homo | 99.42 | |
| d2adca2 | 88 | Polypyrimidine tract-binding protein {Human (Homo | 99.42 | |
| d1x4ea1 | 72 | RNA-binding motif, single-stranded-interacting pro | 99.42 | |
| d1whxa_ | 111 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.41 | |
| d2cpia1 | 89 | E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc | 99.41 | |
| d3begb1 | 87 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.41 | |
| d1nu4a_ | 91 | Splicesomal U1A protein {Human (Homo sapiens) [Tax | 99.41 | |
| d2b0ga1 | 83 | Splicesomal U1A protein {Drosophila melanogaster [ | 99.4 | |
| d1wela1 | 112 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.4 | |
| d2cpja1 | 86 | Non-POU domain-containing octamer-binding protein, | 99.4 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.39 | |
| d1wi6a1 | 75 | Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M | 99.37 | |
| d1wexa_ | 104 | Heterogeneous nuclear ribonucleoprotein L-like {Mo | 99.36 | |
| d2cq1a1 | 88 | Polypyrimidine tract-binding protein 2, PTBP2 {Hum | 99.35 | |
| d1u2fa_ | 90 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.35 | |
| d1whya_ | 97 | Putative RNA-binding protein 15B, Rbm15b {Mouse (M | 99.34 | |
| d2adba1 | 108 | Polypyrimidine tract-binding protein {Human (Homo | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.31 | |
| d1x4fa1 | 99 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.3 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.25 | |
| d1x4da1 | 89 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.23 | |
| d1weya_ | 104 | Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 | 99.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1wwha1 | 81 | Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 | 99.07 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | U2 | 99.07 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.05 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.01 | |
| d1of5b_ | 165 | mRNA transport regulator MTR2 {Baker's yeast (Sacc | 99.0 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.99 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1owxa_ | 113 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 98.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.93 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.91 | |
| d2cq2a1 | 101 | Alkylation repair AlkB homolog 8, ALKBH8 {Human (H | 98.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.89 | |
| d1q40b_ | 205 | NTF2-like domain of mRNA export factor MEX67 {Yeas | 98.87 | |
| d2dita1 | 99 | HIV Tat-specific factor 1 {Human (Homo sapiens) [T | 98.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.82 | |
| d1of5a_ | 221 | NTF2-like domain of mRNA export factor MEX67 {Bake | 98.82 | |
| d1jkgb_ | 186 | NTF2-like domain of Tip associating protein, TAP { | 98.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.6 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.58 | |
| d1o0pa_ | 104 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 98.58 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.95 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.79 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.68 | |
| d1q42a_ | 174 | mRNA transport regulator MTR2 {Yeast (Candida albi | 96.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.72 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.25 | |
| d1ufwa_ | 95 | Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606] | 94.6 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.79 | |
| d1uw4a_ | 91 | RNA processing protein UPF3x, RRM domain {Human (H | 92.89 | |
| d2dgxa1 | 73 | Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960 | 90.56 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 90.28 | |
| d3d9ra1 | 132 | Uncharacterized protein ECA1476 {Pectobacterium at | 89.46 | |
| d2gxfa1 | 128 | Hypothetical protein YybH {Bacillus subtilis [TaxI | 89.36 | |
| d3b7ca1 | 121 | Uncharacterized protein SO0125 {Shewanella oneiden | 88.51 | |
| d3cu3a1 | 162 | Uncharacterized protein NpunR1993 {Nostoc punctifo | 88.28 | |
| d2owpa1 | 128 | Hypothetical protein BxeB1374 {Burkholderia xenovo | 88.12 | |
| d1whva_ | 100 | Poly(A)-specific ribonuclease PARN {Mouse (Mus mus | 87.13 | |
| d2rcda1 | 127 | Uncharacterized protein ECA3500 {Pectobacterium at | 85.61 | |
| d1m98a2 | 142 | Orange carotenoid protein, C-terminal domain {Cyan | 85.25 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5e-30 Score=289.16 Aligned_cols=273 Identities=20% Similarity=0.260 Sum_probs=238.8
Q ss_pred CCChhcHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------------ChH
Q 001060 350 PLSVTELENWHNYLDFIERDG--------DFNKVVKLYERCLIACANYPEYWIRYVLCMEASG--------------SMD 407 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~g--------d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g--------------~~e 407 (1169)
|.+..++++|+.|++|++..+ ..++++.+|+|||..+|.++++|+.|+.|+...+ ..+
T Consensus 2 ~~e~~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (308)
T d2onda1 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchH
Confidence 455678899999999987653 3568999999999999999999999999987543 347
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQA 486 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~~~~~~~a~~e~r~g~~e~A~~iy~~A 486 (1169)
+|+.+|+||++.++|.+..+|+.++.+++..|++++|+.+|+++ ++..|.+ ..+|+.++.++.+.+++++|+.+|+++
T Consensus 82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~-l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 89999999999877999999999999999999999999999998 6778765 568999999999999999999999999
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 487 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 487 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
+...+.+ +.+|..++.+++...|+.+.|+++|+++++.+|++..+|..|+.|+...++ ++.+|.+|++++.
T Consensus 161 l~~~~~~------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~---~~~aR~~fe~ai~ 231 (308)
T d2onda1 161 REDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLT 231 (308)
T ss_dssp HTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HHhCCCc------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH
Confidence 9988643 568889998888877899999999999999999999999999999999987 6779999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCC
Q 001060 567 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP 644 (1169)
Q Consensus 567 ~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~ 644 (1169)
..+.++ ++...||..|++||..|||++++.++++|+.++++... +. .+.....+|+|+++++||+.
T Consensus 232 ~~~~~~-----~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~-----~~--~~~~~~~~ry~~~d~~~~~~ 297 (308)
T d2onda1 232 SGSLPP-----EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY-----EG--KETALLVDRYKFMDLYPCSA 297 (308)
T ss_dssp SSSSCG-----GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT-----SS--CHHHHHHTTTCBTTBCSSCH
T ss_pred hCCCCh-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc-----cc--chHHHHHHHHHhcccCcCCH
Confidence 876443 45678999999999999999999999999999998641 11 13455679999999999875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.4e-26 Score=263.39 Aligned_cols=213 Identities=18% Similarity=0.207 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
+...+...+.++.++..++++|+ ++|.....|..++..+...|++++|+..|++++...+.....|..++.+
T Consensus 175 l~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 175 LGCVFNAQGEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hcccccccCcHHHHHHHHHHHHH--------hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHH
Confidence 34566677788889999999998 6788899999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
+...|++++|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ....|....++..++.++...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh-hccCCccchhhhHHHHHHHHCCCHHHH
Confidence 999999999999999999987 899999999999999999999999999998 778999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 480 ~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
+.+|+++++..|+ .+.+|..++.++.. .|++++|+..|++||+++|++...|..++.....++
T Consensus 325 ~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 325 VRLYRKALEVFPE------FAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTT------CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9999999998763 36788899999877 999999999999999999999999888777666554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-25 Score=256.58 Aligned_cols=385 Identities=12% Similarity=0.066 Sum_probs=305.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 183 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~ 183 (1169)
.|+..+-+ .|++++|+++|+++++.+|++..+|..++.++.+.|++++|+.+|+++|+.+|.+.+.|..++.++. ..
T Consensus 4 ~la~~~~~--~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~-~~ 80 (388)
T d1w3ba_ 4 ELAHREYQ--AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ER 80 (388)
T ss_dssp THHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh-hh
Confidence 34555555 3699999999999999999999999999999999999999999999999999999999999999988 78
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCH
Q 001060 184 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 263 (1169)
Q Consensus 184 ~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1169)
|++++|+..|++++...+. ....+...............+...+.................
T Consensus 81 g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 141 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL---------------- 141 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH----------------
T ss_pred ccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 9999999999999985443 333333333333322222222222222221111100000000
Q ss_pred HHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001060 264 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 343 (1169)
Q Consensus 264 eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r 343 (1169)
...+........++..+.+.+.
T Consensus 142 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~- 163 (388)
T d1w3ba_ 142 ---------------------------------------------------------GNLLKALGRLEEAKACYLKAIE- 163 (388)
T ss_dssp ---------------------------------------------------------HHHHHTTSCHHHHHHHHHHHHH-
T ss_pred ---------------------------------------------------------cccccccchhhhhHHHHHHhhc-
Confidence 0111112222333344555554
Q ss_pred CCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc
Q 001060 344 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 423 (1169)
Q Consensus 344 ~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~ 423 (1169)
..|.....|..++.++...|++++|+..+++++...|.+.++|..++.++...|++++|...|++++.+. +.
T Consensus 164 -------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 164 -------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp -------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred -------cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 4566778899999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
....+..++.++.+.|++++|+..|+++ ++++|++..+|..++.++...|++++|+.+|++++...|. .+.++
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~ 308 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSL 308 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhh
Confidence 8999999999999999999999999998 7899999999999999999999999999999999998753 25677
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 001060 504 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREEL 583 (1169)
Q Consensus 504 ~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i 583 (1169)
..++.++.. .|++++|.+.|+++++..|++...|..++......|+ .+.+..+|++++...|++. ++
T Consensus 309 ~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~~~---------~a 375 (388)
T d1w3ba_ 309 NNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA---------DA 375 (388)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH---------HH
T ss_pred hHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH---------HH
Confidence 888888766 9999999999999999999999999999988888887 5668999999999887664 46
Q ss_pred HHHHHHHHHhhCC
Q 001060 584 SCVFLEFLGLFGD 596 (1169)
Q Consensus 584 ~~~~l~fe~~~Gd 596 (1169)
|.....-..+.||
T Consensus 376 ~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 376 YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 6666666666665
|
| >d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=1e-28 Score=236.20 Aligned_cols=118 Identities=25% Similarity=0.372 Sum_probs=106.3
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccCCCceE
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGVL 797 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~~~~il 797 (1169)
+++||++||++||++|+++|+.|++||.++|.| +|+|+.+. |.++|.++|++||+++| +|.++|||++.+++||
T Consensus 5 ~e~ig~~Fv~~YY~~l~~~r~~L~~~Y~~~S~l-~~~g~~~~---G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~~~il 80 (125)
T d1gy6a_ 5 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCL-TWEGQQFQ---GKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEE-EETTEEEE---SHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHcCCCcEE-EECCcccc---CHHHHHHHHHcCCCcccEEEEeEEEEEEcCCCCEE
Confidence 467999999999999999999999999998655 57887655 55668899999999875 6999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccCCC
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEP 842 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~ 842 (1169)
|+|+|.|+.+++ ++++|+|||+|++++++|||+||||||+.+++
T Consensus 81 i~V~G~~~~~~~-~~~~F~qtF~L~~~~~~y~I~NDiFR~v~~~~ 124 (125)
T d1gy6a_ 81 SMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 124 (125)
T ss_dssp EEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEEEEEECCC-CCcceEEEEEEeccCCEEEEEeeEEEEEeccC
Confidence 999999999886 78999999999999999999999999998764
|
| >d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.7e-28 Score=230.05 Aligned_cols=115 Identities=26% Similarity=0.471 Sum_probs=102.3
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeecccc-CCCce
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGS-WNGGV 796 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~-~~~~i 796 (1169)
+.+||+.||++||++|+++|+.|++||.++|.| +|+|+.+. |.++|.++|.+||+++| +|.++||||+ .+|+|
T Consensus 2 ~~~Ia~~Fv~~YY~~l~~~r~~L~~~Y~~~s~l-~~~g~~~~---G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~~~i 77 (121)
T d1gy7a_ 2 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESML-TFETSQLQ---GAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDV 77 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEE-EETTEEEE---SHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHcCCCcEE-EECCeEec---CHHHHHHHHHhCCCcccEEEEeeEeeEEccCCCeE
Confidence 468999999999999999999999999997655 57987655 55678999999999875 7999999995 57789
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEec
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~ 838 (1169)
||+|+|.++.+++.++++|+|||+|++++++|||+|||||++
T Consensus 78 li~V~G~~~~~~~~~~~~F~qtF~L~~~~~~y~I~nD~FRl~ 119 (121)
T d1gy7a_ 78 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLN 119 (121)
T ss_dssp EEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCcceeEEEEEEEeeCCEEEEEEEEEEEe
Confidence 999999999987656899999999999999999999999986
|
| >d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-related export protein 1 (p15) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.8e-27 Score=230.35 Aligned_cols=116 Identities=22% Similarity=0.428 Sum_probs=102.8
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCC------
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN------ 793 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~------ 793 (1169)
...||..||++||++|+++|+.|++||.++|.|+ |+|+.+. |.++|.++|.+||+++++|.++|||++.+
T Consensus 12 a~~~a~~FV~~YY~~l~~~r~~L~~fY~~~S~l~-~~g~~~~---G~~~I~~~l~~lp~~~~~i~~~D~q~~~~~~~~~~ 87 (139)
T d1jkga_ 12 ACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLV-WNGNAVS---GQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQ 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-ETTEEEE---SHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHhCCCceEE-ECCeecc---CHHHHHHHHHhCCCceeEEEEEEEEEcCcccccCC
Confidence 3569999999999999999999999999986665 6987655 55678999999999999999999998653
Q ss_pred CceEEEEEEEEEecCccccceeEEEEEEEeeC----CeEEEEcceEEeccC
Q 001060 794 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE----KGYFVLNDIFHFLDE 840 (1169)
Q Consensus 794 ~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nDifr~~~~ 840 (1169)
+||||+|+|.|+.++. ++|+|+|||+|++++ ++|||+||||||+|-
T Consensus 88 ~~ilI~V~G~v~~~~~-~~r~F~QtF~L~~~~~~~~~~y~I~nD~fR~vd~ 137 (139)
T d1jkga_ 88 TTVLVVICGSVKFEGN-KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 137 (139)
T ss_dssp CEEEEEEEEEEEETTS-CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CeEEEEEEEEEEcCCC-CcceeEEEEEEEecCCCCCCcEEEEeeEEEEEec
Confidence 5899999999999986 789999999999875 469999999999985
|
| >d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Cryptosporidium parvum [TaxId: 5807]
Probab=99.94 E-value=4.3e-27 Score=222.90 Aligned_cols=112 Identities=30% Similarity=0.521 Sum_probs=100.3
Q ss_pred chhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccCCCceEE
Q 001060 721 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGVLV 798 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~~~~ilv 798 (1169)
++||+.||++||++|+++|+.|++||.++|. ++|+|+.+. |.++|.++|.+||++.| +|.++|||++.++||||
T Consensus 2 e~vg~~Fv~~YY~~~~~~r~~l~~~Y~~~s~-l~~~g~~~~---G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~~~ili 77 (117)
T d1zo2a1 2 DQIGKQFVQHYYQTFQTNRPALGGLYGPQSM-LTWEDTQFQ---GQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIV 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSEEE
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhhccCCcE-EEECCCccc---CHHHHHHHHHhCCCccceEEEeeEEEEEcCCCCEEE
Confidence 4799999999999999999999999999755 557887655 45668899999999865 69999999999999999
Q ss_pred EEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEe
Q 001060 799 MVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHF 837 (1169)
Q Consensus 799 ~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~ 837 (1169)
+|+|.|+.++. ++++|+|+|+|++++ ++|||+|||||+
T Consensus 78 ~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~~I~nD~FRl 116 (117)
T d1zo2a1 78 FVTGDVRIDDG-QPLKFSQVFNLMPSGNGGFMIFNDLFRL 116 (117)
T ss_dssp EEEEEEEETTC-CCEEEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEEEeCCC-CcceeEEEEEEeEcCCCCEEEEeEEeec
Confidence 99999999886 789999999999986 589999999996
|
| >d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: UBP3-associated protein BRE5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.3e-23 Score=206.21 Aligned_cols=117 Identities=20% Similarity=0.355 Sum_probs=99.5
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcc------------cchhhHHHHHHHHhcCCC--cc--eeE
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST------------ESASSMLDIHSLVISLNF--TA--IEI 783 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~------------~~~~~~~~I~~~~~~l~~--~~--~~i 783 (1169)
+++||+.||++||++|+++|+.|++||+++|.|+ |+|... ....|.++|+++|.+|+. .+ ++|
T Consensus 3 ~e~ig~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~s-~~~~~~~~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~~~i 81 (139)
T d2qiya1 3 VQDICFAFLQNYYERMRTDPSKLAYFYASTAELT-HTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKL 81 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhcCCcEEE-EcCCCcccccccchhhhhhccccHHHHHHHHHhcCccccceEEee
Confidence 4689999999999999999999999999987665 565432 234688999999999984 33 469
Q ss_pred eeeeccccC--CCceEEEEEEEEEecCccccceeEEEEEEEeeCC--eEEEEcceEEec
Q 001060 784 KTINSLGSW--NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEK--GYFVLNDIFHFL 838 (1169)
Q Consensus 784 ~~~d~q~~~--~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~~--~y~v~nDifr~~ 838 (1169)
.++|+|++. +++|+|+|+|.++.++. +.|+|+|||+|+|+++ .|+|.|||||||
T Consensus 82 ~~~d~~~~~~~~~~i~v~V~G~~~~~~~-~~r~F~qtFvL~p~~~~~~~~I~nDifR~v 139 (139)
T d2qiya1 82 DTIDFQYTGHLHKSILIMATGEMFWTGT-PVYKFCQTFILLPSSNGSTFDITNDIIRFI 139 (139)
T ss_dssp EEEEEEEESGGGCEEEEEEEEEEEETTC-CCEEEEEEEEEEECC---CEEEEEEEEEEE
T ss_pred eeeeeeecccCCCEEEEEEeeEEecCCC-CccceEEEEEEEecCCCCEEEEEeeEEEeC
Confidence 999999854 78899999999999886 7899999999999874 599999999996
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.8e-21 Score=218.46 Aligned_cols=242 Identities=15% Similarity=0.233 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh-------------cCCHHHHHHH
Q 001060 134 CYGYWKKYADHEARVG--------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT-------------YGDPETIRRL 192 (1169)
Q Consensus 134 ~~~~W~~~a~~e~~~~--------~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~-------------~~~~e~Ar~~ 192 (1169)
..+.|+.|+++|..++ ..++++.+|+|||..+|.+.++|+.|+.|+.+. .+..++++.+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 86 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHH
Confidence 3578999999998764 256799999999999999999999999998621 1235789999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 272 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~ 272 (1169)
|+||++... +.+..+|..|+.++..++++++|+.+|.++|...+.+
T Consensus 87 ~~ral~~~~--p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-------------------------------- 132 (308)
T d2onda1 87 YERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-------------------------------- 132 (308)
T ss_dssp HHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--------------------------------
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC--------------------------------
Confidence 999997532 3477899999999999999999999888876542210
Q ss_pred HhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC
Q 001060 273 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352 (1169)
Q Consensus 273 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~ 352 (1169)
T Consensus 133 -------------------------------------------------------------------------------- 132 (308)
T d2onda1 133 -------------------------------------------------------------------------------- 132 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
...+|..|+.++.+.+++++++.+|++++..+|....+|+.++.+... .|+.+.|+.+|++++..+ |+++.+|+.+
T Consensus 133 --~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y 209 (308)
T d2onda1 133 --PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAY 209 (308)
T ss_dssp --THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred --hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 123588888888888888899999999999999888999888876544 478888999999999887 7888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+.++...|+++.||.+|+++ +...|. ...+|..++.+|.+.|+.+.++.+++++.+..+..
T Consensus 210 ~~~~~~~g~~~~aR~~fe~a-i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 210 IDYLSHLNEDNNTRVLFERV-LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHH-HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHcCChHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 99999999999999999998 554543 34689999999999999999999999999888753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=7.4e-19 Score=197.25 Aligned_cols=264 Identities=11% Similarity=-0.002 Sum_probs=200.5
Q ss_pred hCCC-CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 94 ANSS-DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 94 ~nP~-d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
.||. +.+.++..+..+.. .|++++|+.+|+++|+.+|.+..+|..++.++...|++++|+..|++++...|.+.+.|
T Consensus 13 ~n~~~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 90 (323)
T d1fcha_ 13 ENPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 90 (323)
T ss_dssp SCTTTTCSSHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCCCcchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccc
Confidence 3453 55667777877776 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 252 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~ 252 (1169)
+.++..+. ..++.++|.+.|++++...+... .++...... ........
T Consensus 91 ~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~--------------------------~~~~~~~~-- 138 (323)
T d1fcha_ 91 MALAVSFT-NESLQRQACEILRDWLRYTPAYA---HLVTPAEEG--------------------------AGGAGLGP-- 138 (323)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTG---GGCC-----------------------------------------
T ss_pred cccccccc-ccccccccccchhhHHHhccchH---HHHHhhhhh--------------------------hhhccccc--
Confidence 99998888 78999999999999998554321 110000000 00000000
Q ss_pred hcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 253 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 332 (1169)
Q Consensus 253 ~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ 332 (1169)
... . ...+...+.+.+
T Consensus 139 ------------------------~~~------------------------------------~----~~~~~~~~~~~~ 154 (323)
T d1fcha_ 139 ------------------------SKR------------------------------------I----LGSLLSDSLFLE 154 (323)
T ss_dssp --------------------------C------------------------------------T----THHHHHHHHHHH
T ss_pred ------------------------chh------------------------------------h----HHHHHHhhHHHH
Confidence 000 0 001223345566
Q ss_pred HHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 333 KIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 333 ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++..|+++|+ ++|. ....|..++..+...|++++|+..|++++...|.+.++|..++.++...|++++|+
T Consensus 155 a~~~~~~al~--------~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 155 VKELFLAAVR--------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHH--------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH--------HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 7777888776 3332 35678888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
..|++++++. |+++.+|+.+|.++.+.|++++|+..|+++ ++++|++...+..
T Consensus 227 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~ 279 (323)
T d1fcha_ 227 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRGE 279 (323)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC------
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCcChhhhhh
Confidence 9999999977 889999999999999999999999999998 7788877665433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.6e-18 Score=192.71 Aligned_cols=252 Identities=15% Similarity=0.044 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
.-|+..|..+++.|++++|+.+|+++|+.+|.+.+.|..++.++. ..|++++|+..|+++++..+ .....|..++.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~ 95 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKP---DNQTALMALAV 95 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhcccc---ccccccccccc
Confidence 557889999999999999999999999999999999999999888 88999999999999999554 46788999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcc
Q 001060 216 YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDA 295 (1169)
Q Consensus 216 ~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 295 (1169)
.....++++.|..+|++++...+.....+ ....
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~~------------------------------ 128 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLV-----------------TPAE------------------------------ 128 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGC-----------------C---------------------------------
T ss_pred cccccccccccccchhhHHHhccchHHHH-----------------Hhhh------------------------------
Confidence 88999999999999999887633210000 0000
Q ss_pred ccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHH
Q 001060 296 TEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375 (1169)
Q Consensus 296 ~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a 375 (1169)
... ... . +......+......+.+.++
T Consensus 129 -------------------~~~-----~~~--------------~---------------~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 129 -------------------EGA-----GGA--------------G---------------LGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp -----------------------------------------------------------------CTTHHHHHHHHHHHH
T ss_pred -------------------hhh-----hhc--------------c---------------cccchhhHHHHHHhhHHHHH
Confidence 000 000 0 00001111112334556778
Q ss_pred HHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 376 VKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 376 ~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
+..|++++..+|. .+.+|..++.++...|++++|+..|++++... |++..+|..+|.++...|++++|...|+++ +
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l 233 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA-L 233 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHH-H
Confidence 9999999999876 46789999999999999999999999999987 899999999999999999999999999998 7
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 454 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 454 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+++|++..+|+.++.++.+.|++++|+..|++||++.|.+
T Consensus 234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 8999999999999999999999999999999999998753
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.68 E-value=3.3e-16 Score=152.80 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=75.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++|+++|+++|++||.|++|.| ++++.+|+++|||||+|.+.++|.+||+. +++.|+||.|+|+++
T Consensus 41 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 119 (139)
T d1u6fa1 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI-VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEE-EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhcccccccc-ccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3578999999999999999999999999999876 66788999999999999999999999986 899999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 120 ~~~~ 123 (139)
T d1u6fa1 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.6e-16 Score=144.70 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+...++|||+|||+.+|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+.++..|+||.|+|+.
T Consensus 7 d~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~ 85 (103)
T d2cqda1 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 85 (103)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCcCcHHHHHHHHhhcccccceec-cccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 335578999999999999999999999999999875 6678889999999999999999999999866689999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+....
T Consensus 86 a~~~~ 90 (103)
T d2cqda1 86 AYLGA 90 (103)
T ss_dssp STTTC
T ss_pred cCCCC
Confidence 87643
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=2.8e-16 Score=143.58 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++|+++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+.+
T Consensus 7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i-~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a 85 (99)
T d1whwa_ 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCceeeee-cccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999999875 56778899999999999999999999976 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 86 ~~~~~ 90 (99)
T d1whwa_ 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCCc
Confidence 87643
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2e-16 Score=139.51 Aligned_cols=79 Identities=19% Similarity=0.380 Sum_probs=73.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+||+.+++.|+||.|+|..+.
T Consensus 5 ~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A~ 83 (84)
T d1l3ka1 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 83 (84)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhhccccceee-cccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEeee
Confidence 3589999999999999999999999999999875 578889999999999999999999999999999999999998764
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.64 E-value=3.5e-16 Score=139.46 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=75.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++|+++|+++|++||.|.++++ ++++.+|+++|||||+|.+.++|++|+.. +|..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i-~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a 84 (88)
T d1rk8a_ 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 84 (88)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccc-cccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5799999999999999999999999999999875 56788999999999999999999999976 999999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
.++
T Consensus 85 ~~k 87 (88)
T d1rk8a_ 85 FVK 87 (88)
T ss_dssp EEC
T ss_pred cCC
Confidence 875
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.64 E-value=2.7e-16 Score=138.42 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=73.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+++|||+|||.++|+++|+++|++||.|+++.| ++++.+|+++|||||+|.+.++|++||+. ++..|+|+.|+|++++
T Consensus 2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~ 80 (82)
T d1b7fa1 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRI-MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 80 (82)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeee-eeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 368999999999999999999999999999875 56778899999999999999999999976 9999999999999987
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
|
T Consensus 81 p 81 (82)
T d1b7fa1 81 P 81 (82)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.6e-16 Score=144.20 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=76.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.| .+++.+++++|||||+|.+.++|.+||+.+++.|+|+.|.|..++
T Consensus 19 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i-~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~ 97 (103)
T d1x4ba1 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 97 (103)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhhCcccceee-cccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECc
Confidence 3579999999999999999999999999999875 567788899999999999999999999989999999999999988
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
++..
T Consensus 98 ~ke~ 101 (103)
T d1x4ba1 98 AREE 101 (103)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7653
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.1e-16 Score=142.41 Aligned_cols=83 Identities=19% Similarity=0.446 Sum_probs=76.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||+++++++|+++|++||.|.++.+ +.++.+|+++|||||+|.+.++|..||+. ++..|+|+.|+|+++
T Consensus 17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~-~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a 95 (102)
T d2cpza1 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV-FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 95 (102)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEE-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhccccccce-eeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999875 56788899999999999999999999975 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 96 ~~k~~ 100 (102)
T d2cpza1 96 RSKND 100 (102)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 88754
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.3e-16 Score=139.73 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=74.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++|||+|||.++|+++|+++|++||+|.+|.+ ++++.+|+++|||||+|.+.++|..||+. ++..|+|+.|+|+++
T Consensus 6 ~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a 84 (93)
T d1h2vz_ 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 84 (93)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCcceecc-ccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4689999999999999999999999999999875 56788899999999999999999999976 899999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
++.
T Consensus 85 ~~~ 87 (93)
T d1h2vz_ 85 AGF 87 (93)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-16 Score=140.66 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=75.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||+++|+++|+++|++||+|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++++
T Consensus 5 ~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~ 83 (89)
T d2cqba1 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83 (89)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhhCCeEEeccc-ccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 479999999999999999999999999999875 56788899999999999999999999976 9999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+++
T Consensus 84 p~~ 86 (89)
T d2cqba1 84 PMR 86 (89)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.2e-16 Score=138.99 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+..+|||+|||.++++++|+++|++||.|.++.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i-~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~a 85 (90)
T d2cq0a1 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 85 (90)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccccccc-cccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEee
Confidence 4588999999999999999999999999999875 56778899999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+|+.
T Consensus 86 kp~~ 89 (90)
T d2cq0a1 86 KPST 89 (90)
T ss_dssp SCCC
T ss_pred eCCC
Confidence 9864
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.4e-16 Score=135.90 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=69.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+|||+|||+++|+++|+++|++||+|.++.| ++++.+|+++|||||+|.+.++|++||+.++..|+|+.|.|..
T Consensus 1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i-~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~r 74 (75)
T d1hd0a_ 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL-KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR 74 (75)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECC
T ss_pred CEEEeCCCCcCCHHHHHHHHHhhcccccccc-ccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeE
Confidence 5899999999999999999999999999875 6678899999999999999999999999999999999999854
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6.1e-16 Score=136.12 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=73.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++++++|+++|++||.|.++++ +++..+|+++|||||+|.+.++|++|++. ++..|+|+.|+|++++|
T Consensus 3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP 81 (82)
T d1fxla1 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (82)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCcccccc-eeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 67999999999999999999999999999875 56788899999999999999999999976 99999999999999986
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=1.3e-16 Score=138.13 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=71.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
++|||+|||+++|+++|+++|++||.|.++.| ++++.+|++||||||+|.+.+++.+||+.+++.|+||.|+|..+
T Consensus 1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A 76 (77)
T d1uawa_ 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhCCcceeee-ecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 47999999999999999999999999999876 56888999999999999999999999999999999999999865
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=2.2e-16 Score=140.10 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=71.7
Q ss_pred CceEEEEecCCCCCC-HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVT-AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t-~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||++++ +++|+++|++||.|.+|+|...++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|+.+
T Consensus 3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a 82 (86)
T d2ghpa3 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 82 (86)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEc
Confidence 468999999999976 5669999999999999876555667899999999999999999999988999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
.+++
T Consensus 83 ~~kP 86 (86)
T d2ghpa3 83 DKKP 86 (86)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.1e-16 Score=137.62 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=73.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. ...|+|+.|.|..+.
T Consensus 7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~srG~aFV~f~~~~~a~~al~~-~~~l~Gr~i~v~~a~ 84 (90)
T d2cqga1 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPN 84 (90)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECCC
T ss_pred CCCeEEEECCCCCCCHHHHHHHHHhhcccceeee-ccCCCCcccCCEEEEEECCHHHHHHHHhc-CCccCCEEeEEEeCC
Confidence 4578999999999999999999999999999976 56788999999999999999999999984 568999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 85 ~k~ 87 (90)
T d2cqga1 85 SKQ 87 (90)
T ss_dssp TTC
T ss_pred CCC
Confidence 754
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.9e-16 Score=139.43 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=75.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|++||+. ++..|+|+.|+|.++
T Consensus 8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~-~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A 86 (93)
T d1x5ua1 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 86 (93)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhCCccccce-eecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 3479999999999999999999999999999864 66788999999999999999999999976 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 87 ~~~~ 90 (93)
T d1x5ua1 87 SAHN 90 (93)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8764
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6.6e-16 Score=134.99 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=72.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
+|||+|||+++|+++|+++|++||+|.+++| ++++.+|+++|||||+|.+.++|..||+. +|..|+||.|+|.+++.
T Consensus 2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~~ 79 (80)
T d1cvja1 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 79 (80)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEE-EecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 6999999999999999999999999999886 56788899999999999999999999976 89999999999999853
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.4e-16 Score=144.03 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=74.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|+.||.|++|+| ++++.+|+++|||||+|.+.++|.+||+++|..|+|+.|+|..+.
T Consensus 17 ~~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i-~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~ 95 (101)
T d2cq4a1 17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 95 (101)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEe-eecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 4579999999999999999999999999999875 678889999999999999999999999889999999999999875
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 96 ~ 96 (101)
T d2cq4a1 96 A 96 (101)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.5e-16 Score=137.66 Aligned_cols=80 Identities=21% Similarity=0.438 Sum_probs=74.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++|+++|+++|++||+|.+++| ++++.+|+++|||||+|.+.++|..|++. ++..|+|+.|+|+++.+
T Consensus 2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i-~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~ 80 (85)
T d2u2fa_ 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 80 (85)
T ss_dssp CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEE-ECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCccceEEe-eccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 57999999999999999999999999999875 56788999999999999999999999996 89999999999999976
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
..
T Consensus 81 ~~ 82 (85)
T d2u2fa_ 81 GA 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=7.5e-16 Score=135.80 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=72.4
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccCCC
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~~~ 1114 (1169)
|||+|||+++|+++|+++|++||.|.++...++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++.++.
T Consensus 1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k~ 80 (83)
T d1x5ta1 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 80 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCCC
Confidence 799999999999999999999999977644467888999999999999999999999986 8999999999999998764
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2e-16 Score=135.92 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|++||+.+++.|+|+.|.|..+
T Consensus 1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i-~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A 75 (75)
T d1x0fa1 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHSCEEEEEC-CCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred CEEEcCCCCCCCHHHHHHHHHHhCCcccccc-cccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence 5999999999999999999999999999875 56788999999999999999999999998889999999988753
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.4e-15 Score=132.78 Aligned_cols=77 Identities=18% Similarity=0.385 Sum_probs=71.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.++|||+|||+++|+++|+++|++||.|..+.+ ..++.+++++|||||+|.+.+++.+|++.++..|+||.|+|..+
T Consensus 2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~-~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A 78 (79)
T d1l3ka2 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 78 (79)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCEEEECCCCCcCCHHHHHHHHHHhcccccccc-ccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 379999999999999999999999999999875 56777899999999999999999999998999999999999864
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.1e-14 Score=158.13 Aligned_cols=208 Identities=9% Similarity=0.036 Sum_probs=178.9
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccChHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.+|...+++..+...+.+.+.+++|+.+|+++|..+|.+..+|...+.++...+ ++++|+..+++++++. |++..+|.
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~ 116 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 116 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHH
Confidence 467777888888888889999999999999999999999999999999998876 5899999999999988 89999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
..+.++.+.|++++|+..|.++ ++++|++..+|..++.++..+|++++|+..|+++|+++|.+ ...|.+.+.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~ka-l~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n------~~a~~~r~~~ 189 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADI-LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFV 189 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHhHHHHhhccHHHHHHHHhhh-hhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc------HHHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999999998643 5678777766
Q ss_pred HHHHhCC------HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001060 510 LHLVSRN------AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 510 ~~~~~g~------~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~ 571 (1169)
+.. .+. +++|...+.++|+..|++...|..+..+....+. +....++++++...++.
T Consensus 190 l~~-~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~----~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 190 ISN-TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL----SKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HHH-TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG----GGCHHHHHHHHHHTTTC
T ss_pred HHH-ccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh----HHHHHHHHHHHHhCCCc
Confidence 554 443 6899999999999999999999776666444332 22456667776665554
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.8e-15 Score=133.23 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=69.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
++++|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V 83 (83)
T d2cqca1 8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83 (83)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccc-cccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence 4689999999999999999999999999999875 56788899999999999999999999975 999999999987
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-15 Score=136.76 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=74.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|..||+. +++.|+|+.|+|+++
T Consensus 4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a 82 (90)
T d1x5sa1 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 (90)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhccccccceee-ccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999764 56777899999999999999999999976 999999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
.++..
T Consensus 83 ~~~~~ 87 (90)
T d1x5sa1 83 GKSSD 87 (90)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 77643
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.59 E-value=3.2e-16 Score=140.39 Aligned_cols=80 Identities=13% Similarity=0.268 Sum_probs=73.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|..+.| .++.+|+++|||||+|.+.+++.+||++++..|+|+.|+|++++
T Consensus 12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v--~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak 89 (91)
T d1fjeb1 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV--VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (91)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC--CEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeee--eecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecC
Confidence 4689999999999999999999999999998765 34568999999999999999999999889999999999999988
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
++
T Consensus 90 ~k 91 (91)
T d1fjeb1 90 GR 91 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=2.1e-15 Score=136.00 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||+++++++|+++|++||.|++|+|......+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~ 86 (94)
T d2cpha1 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 86 (94)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEE
Confidence 4578999999999999999999999999999876433345899999999999999999999975 79999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+.++.
T Consensus 87 A~~~~ 91 (94)
T d2cpha1 87 ADSEV 91 (94)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=2.2e-15 Score=169.99 Aligned_cols=152 Identities=12% Similarity=0.084 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--H
Q 001060 82 SGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--M 151 (1169)
Q Consensus 82 ~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--------~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~--~ 151 (1169)
..+++.+.++|+.||++.++|.....++..++ .+.+.+|+.+|++++..+|.+..+|..++......+. +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 47788888999999999999877666655442 2457788889999999999999999888887777654 7
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 152 e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
++|+..|++++..+|.+...|...+.......+..++|+..|++++. .++.....|......+...++++.|...|+
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~---~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88889999999988888888876554444367888888888888887 444566777777766666666665555555
Q ss_pred HHHhc
Q 001060 232 RILEN 236 (1169)
Q Consensus 232 r~L~~ 236 (1169)
+++..
T Consensus 203 ~~~~~ 207 (334)
T d1dcea1 203 LPENV 207 (334)
T ss_dssp SCHHH
T ss_pred HhHHh
Confidence 44444
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.2e-15 Score=137.03 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=72.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++|| |..+.+...+..+|+++|||||+|.+.++|++|++++++.|+||.|+|+++.
T Consensus 14 p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~ 92 (104)
T d1wi8a_ 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 458999999999999999999999999 6666554445567899999999999999999998889999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 93 ~~~ 95 (104)
T d1wi8a_ 93 QAQ 95 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.57 E-value=3.4e-15 Score=132.11 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=70.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
..++|||+|||.++++++|+++|++||.|.++++ ++++.+|+++|||||+|.+.++|.+||+. ++..+.| ++|+|.
T Consensus 5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~-~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~ 83 (85)
T d1b7fa2 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 83 (85)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeee-ecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEE
Confidence 4578999999999999999999999999999875 66778899999999999999999999986 8888876 889998
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
++
T Consensus 84 ~A 85 (85)
T d1b7fa2 84 LA 85 (85)
T ss_dssp EC
T ss_pred EC
Confidence 75
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5e-15 Score=132.45 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=71.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++|+++|+++|++||+|.+|.+ ++++.+ ++|||||+|.+.++|.+|+.. ++..|+|+.|+|.
T Consensus 5 ~~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~~--~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 81 (90)
T d2cqia1 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 81 (90)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeee-ecccCc--cceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999999999999999999999999875 445444 479999999999999999986 9999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
++++..
T Consensus 82 ~a~~~~ 87 (90)
T d2cqia1 82 WATTPS 87 (90)
T ss_dssp ECCCTT
T ss_pred EcCCCC
Confidence 988643
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=2.4e-15 Score=131.79 Aligned_cols=78 Identities=10% Similarity=0.247 Sum_probs=66.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+.++|
T Consensus 2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P 80 (81)
T d2ghpa1 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIR-LPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 80 (81)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE-CC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cEEEEECCCCcCCHHHHHHHHHHhCcEEeeee-ecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 68999999999999999999999999988754 56677899999999999999999999976 99999999999999887
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.4e-15 Score=136.23 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=75.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeee------E-EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~------i-~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
+.+.++|||+|||+++|+++|+++|++||.|+.+. + ...++.+|+++|||||+|.+.++|.+||+. ++..|+
T Consensus 5 ~~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 84 (101)
T d2cpea1 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 84 (101)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEEC
Confidence 44678999999999999999999999999986431 1 234567789999999999999999999986 999999
Q ss_pred ceEEEEEeccCCCCC
Q 001060 1102 GRQVYIEERRPNTGS 1116 (1169)
Q Consensus 1102 g~~l~V~~~r~~~~~ 1116 (1169)
||.|+|++++++.+.
T Consensus 85 gr~i~V~~a~~~~p~ 99 (101)
T d2cpea1 85 GSKLKVSLARKKPPM 99 (101)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CEEEEEEEcCCCCCC
Confidence 999999999987653
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.5e-15 Score=131.86 Aligned_cols=77 Identities=23% Similarity=0.401 Sum_probs=69.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece--EEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR--QVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~--~l~V~~ 1109 (1169)
+++|||+|||.++|+++|+++|++||+|++++| ++++.+|+++|||||+|.+.++|.+|++. +|..++|+ +|+|.+
T Consensus 6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i-~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~ 84 (85)
T d1fxla2 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 84 (85)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc-ccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence 478999999999999999999999999999886 56778899999999999999999999976 89999984 488876
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 85 A 85 (85)
T d1fxla2 85 A 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1e-14 Score=131.16 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=71.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||+++++++|+++|++||+|++|++ +.++ +.++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 9 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~-~~~~--~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~ 85 (93)
T d2cq3a1 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 85 (93)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcceeeeccc-cccc--cCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35688999999999999999999999999999875 3343 33789999999999999999976 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 86 A~~r~ 90 (93)
T d2cq3a1 86 ATARV 90 (93)
T ss_dssp CCSSC
T ss_pred cCcCC
Confidence 98864
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.6e-15 Score=139.85 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=74.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 7 ~~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i-~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a 85 (104)
T d1p1ta_ 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRL-VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEE-EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhcccccccccc-ccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999875 56788899999999999999999999986 899999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
.+.
T Consensus 86 ~~~ 88 (104)
T d1p1ta_ 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCC
Confidence 764
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=2.5e-15 Score=129.73 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+|++.+++.|+||.|+|..+
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~-~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A 75 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-BCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhCCcceeee-eeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence 5899999999999999999999999999764 55777899999999999999999999998999999999999864
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5e-14 Score=157.43 Aligned_cols=203 Identities=9% Similarity=-0.005 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccCCHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANYPEY 392 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g-d~~~a~~lyeraL~~~~~~~e~ 392 (1169)
...+..++.++.+.+.+++|+..|+++|+ ++|.+..+|...+..+...| ++++++..|+++|..+|.+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~--------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a 114 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIE--------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--------HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH
Confidence 33455567788889999999999999999 89999999999999888765 6999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|...+.++...|++++|+.+|.+++++. |++..+|..++.++...|++++|+..|+++ ++++|.+..+|..++.+..+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a-l~~~p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL-LKEDVRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 899999999999999999999999999998 88999999999999998888
Q ss_pred cCC------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 473 LGN------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 473 ~g~------~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.+. +++|+..|.++|...|.+ ..+|..++.+ +. ...++++..+++++++..|+.
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~P~~------~~~~~~l~~l-l~-~~~~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGI-LQ-DRGLSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHH-HT-TTCGGGCHHHHHHHHHHTTTC
T ss_pred ccccchhhhhHHhHHHHHHHHHhCCCc------hHHHHHHHHH-HH-hcChHHHHHHHHHHHHhCCCc
Confidence 776 589999999999998743 5677766655 33 445789999999999988764
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=5.2e-15 Score=130.94 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=67.9
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc---ccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV---VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g---~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
|||+|||+++|+++|+++|++||.|+++.|. +++.++ +++|||||+|.+.++|.+|++. ++..|+|+.|+|++++
T Consensus 1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~ 79 (85)
T d2cpfa1 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTIS-KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 79 (85)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-EEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred CEEcCCCCCCCHHHHHHHHHHhCCcccccee-cccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 7999999999999999999999999998864 343333 5789999999999999999976 8999999999999976
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
+.
T Consensus 80 ~~ 81 (85)
T d2cpfa1 80 RA 81 (85)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=5.7e-15 Score=128.18 Aligned_cols=75 Identities=27% Similarity=0.343 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+|||+|||+++++++|+++|++||.|.+++| . ...+|+++|||||+|.+.++|.+||+. ++..++|+.|+|+.+.
T Consensus 2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i-~-~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~ 77 (78)
T d1no8a_ 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAV-H-YDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 77 (78)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-S-CSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCCeEEEE-E-EeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5999999999999999999999999999775 3 335889999999999999999999986 9999999999999875
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=6.8e-15 Score=134.17 Aligned_cols=83 Identities=28% Similarity=0.352 Sum_probs=74.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C------CCeeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S------PIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~------~~~i~g~~ 1104 (1169)
++++|||+|||+++|+++|+++|++||.|.++.+ +.++.+++++|||||+|.+.++|.+||+. + +..|+||.
T Consensus 7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~ 85 (98)
T d1x4ha1 7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 85 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHhccccceeeee-ccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEE
Confidence 5689999999999999999999999999998764 55777888999999999999999999985 3 67899999
Q ss_pred EEEEeccCCCC
Q 001060 1105 VYIEERRPNTG 1115 (1169)
Q Consensus 1105 l~V~~~r~~~~ 1115 (1169)
|+|++++++..
T Consensus 86 l~v~~a~~k~~ 96 (98)
T d1x4ha1 86 LKVDLAVTRDE 96 (98)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCc
Confidence 99999987653
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.5e-15 Score=130.48 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||.++|+++|+++|++||+|..|.+ ....+|+++|||||+|.+.++|.+||+.++..++|+.|.|.++.
T Consensus 5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l--~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 82 (85)
T d1zh5a2 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM--RRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 82 (85)
T ss_dssp HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE--EECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEGG
T ss_pred CcCEEEEECCCCCCCHHHHHHHHHHhccccccee--eeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 3579999999999999999999999999999764 34458899999999999999999999889999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=9.9e-15 Score=164.46 Aligned_cols=275 Identities=11% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhccCCCHH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG----------SMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~----------~~e~A~~l~eraL~~~P~s~~ 170 (1169)
++..++..... .+..++|+.+|+++|..+|++..+|.....+...++ .+++|+.+|+++++.+|.+..
T Consensus 31 ~~~~~~~~~~~--~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~ 108 (334)
T d1dcea1 31 ATQAVFQKRQA--GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108 (334)
T ss_dssp HHHHHHHHHHT--TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhc--ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 34444444333 223489999999999999999999987776655543 478999999999999999999
Q ss_pred HHHHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHH
Q 001060 171 IWLHYCIFAINTYG--DPETIRRLFERGLAYVGTDYLSFPLWD-KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS 247 (1169)
Q Consensus 171 lw~~y~~~~~~~~~--~~e~Ar~~~erAl~~~g~d~~s~~lw~-~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~ 247 (1169)
+|.+.+..+. ..+ +.++++..+++++...+ .....|. .........+.++.|...|++++...+.+...++..
T Consensus 109 ~~~~~~~~~~-~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l 184 (334)
T d1dcea1 109 TWHHRCWLLS-RLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHhhHHHH-HhccccHHHHHHHHHHHHhhCc---hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999988776 443 57899999999999543 3444443 333444456777777777777777766665555554
Q ss_pred HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHH
Q 001060 248 FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKA 327 (1169)
Q Consensus 248 ~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~ 327 (1169)
...+.......
T Consensus 185 ~~~~~~~~~~~--------------------------------------------------------------------- 195 (334)
T d1dcea1 185 SCLLPQLHPQP--------------------------------------------------------------------- 195 (334)
T ss_dssp HHHHHHHSCCC---------------------------------------------------------------------
T ss_pred HHHHHHhcCHH---------------------------------------------------------------------
Confidence 43332111100
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++..++++++ +.+...+.+..+ ...+..+.+...|.+++...|.+...|..++..+...++.+
T Consensus 196 ----~A~~~~~~~~~--------~~~~~~~~~~~~----~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 259 (334)
T d1dcea1 196 ----DSGPQGRLPEN--------VLLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSEL 259 (334)
T ss_dssp ----CSSSCCSSCHH--------HHHHHHHHHHHH----HHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHhHH--------hHHHHHHHHHHH----HHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHH
Confidence 00000000000 011111112211 12233445556666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
+|...|.+++..+ |++..+|+.+|.++...|++++|+..|+++ ++++|.....|..++.
T Consensus 260 ~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a-i~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 260 ESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL-KAVDPMRAAYLDDLRS 318 (334)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHH-HHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCcccHHHHHHHHH
Confidence 6666666666655 556666666666666666666676666666 6666666666655543
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.4e-14 Score=131.70 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+...|||+|||+++|+++|+++|+.||.|..+ +.+.++.+++++|||||+|.+.++|++|++.++..|+||.|+|...+
T Consensus 14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~-v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~ 92 (104)
T d1wg5a_ 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE-EECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECC
Confidence 34679999999999999999999999999875 34567778999999999999999999999889999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 93 ~~~ 95 (104)
T d1wg5a_ 93 RAE 95 (104)
T ss_dssp TTT
T ss_pred HHH
Confidence 653
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.5e-14 Score=129.10 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=69.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
.+|||+|||+++|+++|+++|++||.|..++| +.++ +.++|||||+|.+.++|++||+. +|..|+|+.|+|+++++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~ 85 (89)
T d1cvja2 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 85 (89)
T ss_dssp TEEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-CCBT--TBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceEEEE-Eeec--CCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57999999999999999999999999999875 3343 34789999999999999999976 89999999999999987
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 86 ~~ 87 (89)
T d1cvja2 86 RK 87 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8.2e-15 Score=130.39 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=66.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|.+|.+ .+.++|||||+|.+.++|++||. +++.|+|+.|+|++++
T Consensus 4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~------~~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~ 76 (88)
T d1wf0a_ 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI------PKPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC------CSSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE------eeccCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCC
Confidence 3589999999999999999999999999998642 13467999999999999999986 7889999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 77 ~k~ 79 (88)
T d1wf0a_ 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.4e-14 Score=128.36 Aligned_cols=78 Identities=28% Similarity=0.476 Sum_probs=68.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ . .++.++|||||+|.+.++|..||+. +++.|+|+.|+|+++
T Consensus 13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~--~--~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a 88 (95)
T d1x4aa1 13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL--K--NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 88 (95)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE--C--CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEe--c--ccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 3478999999999999999999999999988653 2 2345789999999999999999976 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
++.
T Consensus 89 ~~~ 91 (95)
T d1x4aa1 89 RSG 91 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.6e-14 Score=132.28 Aligned_cols=81 Identities=19% Similarity=0.083 Sum_probs=70.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..+++|||+|||+++|+++|+++|+.||.+ .+.+ + ...+|+++|||||+|.+.++|++|+++++..|+||.|+|..+
T Consensus 13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~-~-~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s 89 (102)
T d1weza_ 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI-E-IGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE-E-ESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHhccCcc-eeee-E-EecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999855 5443 3 344688999999999999999999988999999999999987
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
.++.
T Consensus 90 ~~~~ 93 (102)
T d1weza_ 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.8e-15 Score=136.31 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
...+|||+|||+++|+++|+++|+.||.|..+. .+....+|+++|||||+|.+.++|++||++++..|+||.|.|....
T Consensus 7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~-~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~ 85 (103)
T d2cpya1 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAV-HVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 85 (103)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTE-EECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHhhhhcccceEEEEE-EEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECC
Confidence 347899999999999999999999999998753 4556678999999999999999999999889999999999998764
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.49 E-value=2.8e-14 Score=129.20 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++|+++|+++|++||.|..+. .+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~------~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~ 87 (96)
T d1fjca_ 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVS------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEE------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeee------ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999999999999999999999999987532 2567899999999999999999976 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+.+++
T Consensus 88 a~~k~ 92 (96)
T d1fjca_ 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred eCCCC
Confidence 98764
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=3.8e-14 Score=121.70 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=65.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
++|||+|||+++++++|+++|++||.|+.+++ .+++. ..+|||||+|++.++|.+||.+++..|+|+.|.|+..
T Consensus 1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~-~~~~~--~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~ 74 (75)
T d2ghpa2 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLK--KNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 74 (75)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEE-EECTT--SSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhcCCceEEEEE-Eeecc--ccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence 47999999999999999999999999999875 34443 3457999999999999999988999999999999864
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.1e-14 Score=127.60 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=65.4
Q ss_pred CceEEEEecCC-CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...+|||+||| ..+++++|+++|++||.|++++| .||||||+|++.++|.+||+. ++..|+|+.|+|++
T Consensus 14 ~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i---------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 84 (98)
T d1wf2a_ 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84 (98)
T ss_dssp CCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE---------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE---------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45789999996 57889999999999999999764 368999999999999999987 89999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+++.
T Consensus 85 a~~~ 88 (98)
T d1wf2a_ 85 AAEP 88 (98)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8764
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-14 Score=133.00 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|..+.+ +.+..+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 17 ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~-~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 95 (102)
T d2cpxa1 17 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPI-QFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 95 (102)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCC-EEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEe-ecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999864 45666789999999999999999999976 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 96 k~k~~ 100 (102)
T d2cpxa1 96 KNKKQ 100 (102)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.2e-12 Score=140.78 Aligned_cols=229 Identities=10% Similarity=-0.017 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 408 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~ 408 (1169)
+.+.++..+++++.+. ...++....+|...+..+.+.|++++|+..|+++|..+|.++++|..+|.++...|++++
T Consensus 14 ~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 14 QQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence 3445555677777641 113566778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001060 409 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 488 (1169)
Q Consensus 409 A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~ 488 (1169)
|+..|++++++. |++..+|+.+|.++...|++++|+..|+++ +++.|.+...+..++....+.+..+....+......
T Consensus 90 A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 90 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHH-HhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 999999999988 899999999999999999999999999998 788999888777777777777665555555555444
Q ss_pred hhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001060 489 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
..+. ......+...++.. .. .+..+.+...+..++...|.....|..++.+....|+ .+.+..+|++++..+
T Consensus 168 ~~~~---~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 168 SDKE---QWGWNIVEFYLGNI-SE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANN 239 (259)
T ss_dssp SCCC---STHHHHHHHHTTSS-CH-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC
T ss_pred cchh---hhhhhHHHHHHHHH-HH-HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcC
Confidence 4321 11111111111110 11 2335666666666666667666677667777777776 667889999999887
Q ss_pred CCC
Q 001060 569 SDS 571 (1169)
Q Consensus 569 ~~~ 571 (1169)
|++
T Consensus 240 p~~ 242 (259)
T d1xnfa_ 240 VHN 242 (259)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.5e-14 Score=131.27 Aligned_cols=76 Identities=28% Similarity=0.354 Sum_probs=68.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+++|||+|||.++|+++|+++|++||.|++|.+. .+++++|||||+|.+.++|..||+. +|..|+|+.|+|+++.
T Consensus 7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~----~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 82 (114)
T d2f9da1 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG----NTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN 82 (114)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE----CSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCeEeeccc----ccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 5899999999999999999999999999997642 2456789999999999999999976 9999999999999875
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 83 ~ 83 (114)
T d2f9da1 83 A 83 (114)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.4e-14 Score=127.92 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=70.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEEe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~~ 1109 (1169)
++|||+|||.++|+++|+++|++||+ |..+.+......+|+++|||||+|.+.++|.+|++. .++.++|+.|+|++
T Consensus 2 ~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~ 81 (96)
T d2disa1 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 81 (96)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEE
Confidence 68999999999999999999999996 888764322345688999999999999999999976 36778899999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 82 A~p~~~ 87 (96)
T d2disa1 82 AEPEID 87 (96)
T ss_dssp SCSSCS
T ss_pred cCCCCC
Confidence 987643
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.6e-14 Score=126.03 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|++|+| ++ .||||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 17 ~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i-~~------~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~a 89 (96)
T d1x4ga1 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FP------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89 (96)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEE-Ee------cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3478999999999999999999999999999875 32 368999999999999999976 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++++
T Consensus 90 k~~p 93 (96)
T d1x4ga1 90 KESP 93 (96)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.6e-14 Score=130.65 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=69.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ + ...+++++|||||+|.+.++|.+||+. ||..|.||++.|..+
T Consensus 17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~-~-~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~ 94 (101)
T d1x5oa1 17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-L-RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94 (101)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-E-ECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcccccceee-e-cccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence 4589999999999999999999999999998754 3 335788999999999999999999976 999999999888766
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
+|
T Consensus 95 ~P 96 (101)
T d1x5oa1 95 EP 96 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=9.9e-14 Score=122.84 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=68.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+.|||+|||+++++++|+++|+.||.|.... .+.++.+|+++|||||+|.+.++|.+||+. ++..|+||+|+|..+
T Consensus 9 ~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~-~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~ 86 (86)
T d2cqpa1 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV-CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86 (86)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC-EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcccceeEE-EEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 47899999999999999999999999997653 355667899999999999999999999976 999999999999753
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.5e-13 Score=121.68 Aligned_cols=76 Identities=30% Similarity=0.354 Sum_probs=68.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++|||||+|.+.++|.+||.. ++..|+|+.|+|++++
T Consensus 8 ~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~-------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak 80 (86)
T d2cpda1 8 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80 (86)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE-------EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCEEEEcCCCCCCCHHHHHHhhcccceeeeEEE-------ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence 478999999999999999999999999987543 34678999999999999999986 9999999999999998
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
|+..
T Consensus 81 P~~~ 84 (86)
T d2cpda1 81 PVDK 84 (86)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=8.5e-14 Score=121.21 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=65.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeceEEEEEecc
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGRQVYIEERR 1111 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~-~~i~g~~l~V~~~r 1111 (1169)
.+|||+|||.++|+++|+++|++||.|..+.+. +.+|||||+|.+.++|.+||+. +| +.|+|+.|+|++++
T Consensus 2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~-------~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~ 74 (80)
T d2cqha1 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 74 (80)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEe-------cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcC
Confidence 469999999999999999999999999875542 3568999999999999999976 77 57999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 75 ~k~ 77 (80)
T d2cqha1 75 SKK 77 (80)
T ss_dssp CCC
T ss_pred CcC
Confidence 864
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.1e-12 Score=138.69 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWI 394 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~ 394 (1169)
.++-.++.+|...+++++|+..|+++|. ++|.+...|..++..+.+.|++++|+..|++++..+|.+.++|+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~--------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 109 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALA--------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhc--------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHH
Confidence 3555678899999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH----
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME---- 470 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e---- 470 (1169)
.++.++...|++++|...|++++++. |++...++.++....+.+..+.+..+.... ....+..... . ...+.
T Consensus 110 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~ 185 (259)
T d1xnfa_ 110 NRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF-EKSDKEQWGW-N-IVEFYLGNI 185 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHSCCCSTHH-H-HHHHHTTSS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHh-hccchhhhhh-h-HHHHHHHHH
Confidence 99999999999999999999999988 777777777776666666655555554443 4444433221 1 11111
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
...+.++.+...+..++...+ ....+|..++.++.. .|++++|++.|++|+..+|++..-+ .++.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~-~~a~~~L 253 (259)
T d1xnfa_ 186 SEQTLMERLKADATDNTSLAE------HLSETNFYLGKYYLS-LGDLDSATALFKLAVANNVHNFVEH-RYALLEL 253 (259)
T ss_dssp CHHHHHHHHHHHCCSHHHHHH------HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCTTCHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCc------ccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHH
Confidence 112234455555555555442 335677888888776 9999999999999999999875333 4555554
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.3e-13 Score=119.84 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=65.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++|||+|++ +|+++|+++|++||.|.++.+. +.+|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~-------~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 74 (79)
T d2bz2a1 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74 (79)
T ss_dssp CCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEECCC--CCHHHHHHHHhccCccceeeec-------cCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45899999996 8999999999999999997642 2468999999999999999976 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++++
T Consensus 75 ~~~P 78 (79)
T d2bz2a1 75 RKQP 78 (79)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8753
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-13 Score=121.58 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=64.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||+++++++|+++|++|| ++.+. + ++.+|||||+|.+.++|++||+. +++.|+|++|+|++++
T Consensus 5 s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~--~-----~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~ 76 (88)
T d1wg1a_ 5 SSGILVKNLPQDSNCQEVHDLLKDYD-LKYCY--V-----DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSSC-CCCEE--E-----EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCccChHHHHHHHHhcC-ceeee--e-----eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 47899999999999999999999999 33222 1 34679999999999999999976 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 77 ~~~ 79 (88)
T d1wg1a_ 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=2e-13 Score=123.66 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=67.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|+++.| . .+|||||+|.+.++|++||+. ++..|+|+.|+|.+.
T Consensus 14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i--~------~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~ 85 (98)
T d1wg4a_ 14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV--Q------KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 85 (98)
T ss_dssp CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEE--E------TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhhcccccccc--c------ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEE
Confidence 3578999999999999999999999999999764 2 348999999999999999976 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+.+.
T Consensus 86 ~~~~ 89 (98)
T d1wg4a_ 86 RVYP 89 (98)
T ss_dssp EEEC
T ss_pred ecCC
Confidence 7654
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.5e-13 Score=126.15 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=66.4
Q ss_pred ceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+++|||+|||+ .+|+++|+++|++||.|+.|.| +++ .+|||||+|++.++|.+||+. ++..|.|+.|+|+++
T Consensus 2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i-~~~-----~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s 75 (109)
T d2adca1 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFN-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 75 (109)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE-CCT-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHhhccccceEEE-Eec-----ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 37899999965 6999999999999999999865 333 268999999999999999987 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+...
T Consensus 76 ~~~~ 79 (109)
T d2adca1 76 KHQN 79 (109)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.3e-13 Score=121.00 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=66.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-eceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-AGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i-~g~~l~V~~ 1109 (1169)
++++|||+|||.++|+++|+++|++||.|..+.+ + . ++++|||||+|++.++|.+|+.. ++..| +|+.|+|++
T Consensus 9 Ps~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~-~-~---~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~ 83 (88)
T d2adca2 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK-F-F---QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 83 (88)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE-E-C---SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEE-e-e---ecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEe
Confidence 4689999999999999999999999999987543 2 1 34578999999999999999976 88888 589999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 84 sk~~ 87 (88)
T d2adca2 84 SKST 87 (88)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8864
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.2e-14 Score=120.70 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=64.2
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
|||+|||.++|+++|+++|++||.|..+.+ ++++.+++++|||||+|.+.++|.+||+. +|..|+|+.|+
T Consensus 1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k 71 (72)
T d1x4ea1 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKA-ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 71 (72)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTSCEEEEEE-ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CEEeCCCCcCCHHHHHHHHhhhcccccccc-ccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence 799999999999999999999999999865 56777899999999999999999999976 89999998763
|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1.5e-13 Score=128.11 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=67.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|..|. +. +.+|||||+|.+.++|.+||+. ++..|.|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~--l~-----~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a 81 (111)
T d1whxa_ 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL--LP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--CC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHhhhhccCCccEEE--ee-----ccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEEC
Confidence 458999999999999999999999999999864 32 3568999999999999999976 999999999999988
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 82 ~~~ 84 (111)
T d1whxa_ 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 654
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=9.6e-14 Score=123.49 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=65.3
Q ss_pred CceEEEEecCCCCCCHHHH---HHHHhcCCCeeeeeEEeecCCCcc---cccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEI---EEEFQNFGRIKPDGVFVRNRKDVV---GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L---~~~F~~~G~i~~~~i~~~~~~~g~---~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+.++|||+|||+++++++| +++|++||+|.+|.| ++++.++. .+|||||+|.+.++|.+||+. ||..|+||.
T Consensus 7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i-~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 85 (89)
T d2cpia1 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 85 (89)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEE-eeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEE
Confidence 3468999999999999999 678999999999875 44554443 458999999999999999976 999999999
Q ss_pred EEEE
Q 001060 1105 VYIE 1108 (1169)
Q Consensus 1105 l~V~ 1108 (1169)
|+|.
T Consensus 86 lkvS 89 (89)
T d2cpia1 86 LKAS 89 (89)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.8e-14 Score=124.47 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=63.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccCC
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPN 1113 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~~ 1113 (1169)
+|||+|||+++|+++|+++|++||.|.++.| . .+|||||+|.+.++|.+||.. ++..|+|+.|+|...+.+
T Consensus 2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i-~-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~ 73 (87)
T d3begb1 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADV-Y-------RDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 73 (87)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-C-------TTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred eEEEECCCCcCCHHHHHHHHhhhcccccccc-c-------ccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEecC
Confidence 6999999999999999999999999999764 2 237999999999999999975 999999999998877654
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-13 Score=122.35 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=69.0
Q ss_pred CceEEEEecCCCCCCHHHHHH----HHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~----~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
|+++|||+|||.++++++|++ +|++||.|.+|.+ ..+++++|||||+|++.++|.+|++. ++..++|+.|+
T Consensus 2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~----~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~ 77 (91)
T d1nu4a_ 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV----SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 77 (91)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC----CHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEE----eeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 458999999999999999864 6899999988543 34577899999999999999999976 89999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|.+++++.
T Consensus 78 v~~ak~~~ 85 (91)
T d1nu4a_ 78 IQYAKTDS 85 (91)
T ss_dssp EEECSSCC
T ss_pred EEEeCCCc
Confidence 99998753
|
| >d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.40 E-value=2.8e-13 Score=118.86 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=65.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~~ 1109 (1169)
++++|||+|||.++|+++|+++|++||.|+++++ +++ .+|||||+|.+.++|.+|+.. +|..|. |+.|+|++
T Consensus 7 P~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~-~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ 80 (83)
T d2b0ga1 7 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRL-VPN-----RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITF 80 (83)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE-CTT-----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHhhhccCccEEEeee-ecc-----cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEE
Confidence 5689999999999999999999999999999765 322 358999999999999999987 888884 68899999
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
++
T Consensus 81 ak 82 (83)
T d2b0ga1 81 AK 82 (83)
T ss_dssp CC
T ss_pred ec
Confidence 86
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.3e-13 Score=128.32 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=70.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
.+++|||+|||+++|+++|+++|+.||.|..+. .+.+..+|+++|||||+|.+.++|++|+++++..|+||.|.|..+.
T Consensus 17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~-~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~ 95 (112)
T d1wela1 17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI-YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 95 (112)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC-EEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCeEEEEecCCCcCcHHHHhhHHhhccccccce-eeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcC
Confidence 467999999999999999999999999997754 3456668999999999999999999999989999999999998653
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=2.8e-13 Score=119.64 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=66.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|++||.|.+|.+ . +.+|||||+|++.++|.+|++. ++..|+|+.|+|+++.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~-~------~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~ 80 (86)
T d2cpja1 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-H------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80 (86)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-E------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCceEeee-e------cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 467999999999999999999999999999764 2 2368999999999999999987 9999999999999987
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
..
T Consensus 81 ~~ 82 (86)
T d2cpja1 81 HS 82 (86)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=5.7e-11 Score=131.99 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc------cCh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANY-----PEYWIRYVLCMEASGSMDLAHNALARATHVFVK------RLP 425 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p------~~~ 425 (1169)
..+..++..+...|+++.+...|++++...+.. ...+...+..+...+++..+...+.++...... ...
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 345556677778899999999999999876533 346666677777889999999999998886632 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
.++...+.++...|++++|...++++ .++.+. ....+..++.++...|++++|..+|++++.........+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHS-CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 56777888999999999999999997 555444 3456778899999999999999999999987654333344456
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
++..++.++.. .|++++|++.|++|+++.
T Consensus 293 ~~~~la~~~~~-~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 293 NLLLLNQLYWQ-AGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHh
Confidence 78888888877 999999999999999864
|
| >d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Ribonucleoprotein PTB-binding 1, Raver-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=6.7e-13 Score=113.73 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=61.7
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccCC
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPN 1113 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~~ 1113 (1169)
|||+|||+++++++|+++|++|| ++.+. +++++|||||+|.+.++|.+|++. ++..++|+.|+|+++++.
T Consensus 1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~-------~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d 71 (75)
T d1wi6a1 1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCF-------VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD 71 (75)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC-EEEEE-------EETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred CEEeCCCCcCCHHHHHHHHhccc-cccee-------ecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence 79999999999999999999999 44422 235789999999999999999976 999999999999998764
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=2.2e-12 Score=118.26 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V 1107 (1169)
.+++.|||+|||.++|+++|+++|++||.|+.+.+ . +.||||||+|++.++|.+||.. +++.++|++|+|
T Consensus 13 ~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~-~------~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v 85 (104)
T d1wexa_ 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-M------PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEE-E------ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEE
Confidence 35789999999999999999999999999999754 2 2468999999999999999965 688999999999
Q ss_pred EeccCC
Q 001060 1108 EERRPN 1113 (1169)
Q Consensus 1108 ~~~r~~ 1113 (1169)
.+++.+
T Consensus 86 ~~s~~~ 91 (104)
T d1wexa_ 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 998764
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.2e-12 Score=116.19 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=67.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V 1107 (1169)
.++++|||+|||.++++++|+++|++||.|.++.+ . +.+|||||+|.+.++|.+|++. ++..++|++|+|
T Consensus 6 ~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~-~------~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v 78 (88)
T d2cq1a1 6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-L------KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 78 (88)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcccccccccc-c------ccceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEE
Confidence 46789999999999999999999999999999754 2 2358999999999999999974 689999999999
Q ss_pred EeccCC
Q 001060 1108 EERRPN 1113 (1169)
Q Consensus 1108 ~~~r~~ 1113 (1169)
.+++.+
T Consensus 79 ~~sk~~ 84 (88)
T d2cq1a1 79 QYSNHK 84 (88)
T ss_dssp EECSCS
T ss_pred EECCCC
Confidence 998764
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.3e-14 Score=128.15 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=68.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEE----eecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVF----VRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~----~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
++|||+|||+++|+++|+++|++||.|..+.+. +.+..+++++|||||+|.+.++|.+|++++|+.++|+.|+|..
T Consensus 2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r 81 (90)
T d1u2fa_ 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 81 (90)
T ss_dssp CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBC
T ss_pred CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECC
Confidence 789999999999999999999999998876532 2345678899999999999999999998899999999999964
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
.+
T Consensus 82 ~k 83 (90)
T d1u2fa_ 82 PH 83 (90)
T ss_dssp TT
T ss_pred CC
Confidence 33
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=1.4e-12 Score=118.03 Aligned_cols=77 Identities=21% Similarity=0.432 Sum_probs=67.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
+.++|||+|||.++++++|+++|++||.|..+++ + +.+|||||+|.+.++|.+|++. ++..|+| ++|+|+
T Consensus 16 Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~-~------~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~ 88 (97)
T d1whya_ 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-V------KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-C------SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhcccceEee-e------ccccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEE
Confidence 5689999999999999999999999999998764 2 2368999999999999999977 8999987 479999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
++++.+.
T Consensus 89 ~ak~~~~ 95 (97)
T d1whya_ 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987543
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=7.7e-13 Score=122.33 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=67.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee--eceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL--AGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i--~g~~l~V~ 1108 (1169)
+..+|||+|||+.+|+++|+++|++||.|.++.|. ++ +.+|||||+|.+.++|..||.. ++..| +|+.|+|.
T Consensus 6 ~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~-~~----~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~ 80 (108)
T d2adba1 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-TK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 80 (108)
T ss_dssp CEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEE-EE----TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEE
T ss_pred CeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEE-ee----CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEE
Confidence 45889999999999999999999999999998653 33 2579999999999999999976 77777 57889999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
++++..
T Consensus 81 ~s~~~~ 86 (108)
T d2adba1 81 FSKLTS 86 (108)
T ss_dssp ECSSCS
T ss_pred ecCCcc
Confidence 887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.4e-10 Score=126.82 Aligned_cols=281 Identities=10% Similarity=-0.030 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC----
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY-----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---- 168 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~-----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---- 168 (1169)
..+.....+.++.. .|++++|..+|+++|...|.+. ..+..++.++...|++++|+..|++++...+..
T Consensus 11 ~ae~~~lrA~~~~~--~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 88 (366)
T d1hz4a_ 11 HAEFNALRAQVAIN--DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence 34455556666665 4699999999999999999874 467778999999999999999999999865422
Q ss_pred --HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC---CC--CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001060 169 --VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD---YL--SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 241 (1169)
Q Consensus 169 --~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d---~~--s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~ 241 (1169)
...+...+..+. ..+++..+...|.+++...... .. ...++..........++++.+...|.+++.......
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 89 YALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence 233444445555 6799999999999998754211 11 123444455566667889999888888876522100
Q ss_pred -HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001060 242 -DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 320 (1169)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~ 320 (1169)
..... .....
T Consensus 168 ~~~~~~---------------------------------------------------------------------~~~~~ 178 (366)
T d1hz4a_ 168 PQQQLQ---------------------------------------------------------------------CLAML 178 (366)
T ss_dssp GGGGHH---------------------------------------------------------------------HHHHH
T ss_pred hhhHHH---------------------------------------------------------------------HHHHH
Confidence 00000 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC----HHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----PEYWIRY 396 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~----~e~W~~~ 396 (1169)
...+...+.+..++..+.+++.. +.......+.....|...+.++...|+++++...+++++...+.+ ...|..+
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENL-LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH-HHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 11222333333333333333321 000111223344566667778888999999999999998876543 3567778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhh-----ccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFV-----KRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~-----p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+.++...|++++|...|++++.... +....+|+.++.++...|++++|+..|+++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888899999999999999986542 345678888999999999999999999987
|
| >d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=2e-12 Score=117.19 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=65.9
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHH---hCCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ---ASPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~---~~~~~i~g~~l~V 1107 (1169)
++++|||+|||.+ +|+++|+++|++||.|.++.+ + +.+|||||+|.+.++|.+||+ .++..|+|+.|+|
T Consensus 17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~-~------~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V 89 (99)
T d1x4fa1 17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-M------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 89 (99)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEE-e------ecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEE
Confidence 5689999999985 899999999999999999764 2 245899999999999999996 3799999999999
Q ss_pred EeccCC
Q 001060 1108 EERRPN 1113 (1169)
Q Consensus 1108 ~~~r~~ 1113 (1169)
.+++.+
T Consensus 90 ~~s~~~ 95 (99)
T d1x4fa1 90 DLSEKY 95 (99)
T ss_dssp EEECSC
T ss_pred EEcCCc
Confidence 998654
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.8e-12 Score=127.99 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=74.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||..+|+++|+++|+.||.|..+.| +.++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|..+.
T Consensus 96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i-~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~~i~V~~A~ 174 (183)
T d1u1qa_ 96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 174 (183)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTEEEEEEECC
T ss_pred ccceeEEccCCCcCCHHHHhhhhccCCceeeeee-ecccccCccceeEEEEECCHHHHHHHHHhCCCeECCEEEEEEecC
Confidence 4579999999999999999999999999999875 567778999999999999999999999888899999999999876
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
++
T Consensus 175 ~k 176 (183)
T d1u1qa_ 175 SK 176 (183)
T ss_dssp CH
T ss_pred Cc
Confidence 54
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=7.6e-12 Score=110.86 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=65.3
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V 1107 (1169)
+++.|||+|||.. +|++||.++|++||.|.++.+ ++ .++||||+|++.++|..|++. ++..++|++|+|
T Consensus 7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i-~~------~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V 79 (89)
T d1x4da1 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 79 (89)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEe-ec------cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEE
Confidence 4689999999986 889999999999999999764 22 347999999999999999974 689999999999
Q ss_pred EeccCC
Q 001060 1108 EERRPN 1113 (1169)
Q Consensus 1108 ~~~r~~ 1113 (1169)
+++++.
T Consensus 80 ~~s~~~ 85 (89)
T d1x4da1 80 HLSQKY 85 (89)
T ss_dssp EEECCC
T ss_pred EECCCc
Confidence 998753
|
| >d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Calcipressin-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=2.1e-11 Score=111.17 Aligned_cols=76 Identities=8% Similarity=0.039 Sum_probs=65.5
Q ss_pred ceEEEEecCCCCC-CH----HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1033 VKSVYVRNLPSTV-TA----FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~-t~----~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
..+|||+||+.++ ++ ++|+++|++||.|.++.+ + +++|||||+|.+.++|.+||+. +|..|+|+.|+
T Consensus 5 ~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~-~------k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 77 (104)
T d1weya_ 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-F------KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-E------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEE-e------cCCCEEEEEECCHHHHHHHHHHhcccccCCCEeE
Confidence 4789999999886 33 569999999999999764 2 3568999999999999999988 89999999999
Q ss_pred EEeccCCCC
Q 001060 1107 IEERRPNTG 1115 (1169)
Q Consensus 1107 V~~~r~~~~ 1115 (1169)
|++++++..
T Consensus 78 v~~a~~~~~ 86 (104)
T d1weya_ 78 LYFAQTLHI 86 (104)
T ss_dssp EECCCCSSC
T ss_pred EeecccCCC
Confidence 999987543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.4e-10 Score=105.93 Aligned_cols=111 Identities=10% Similarity=-0.004 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
.+.-+..+.+.|++++|+..|+++|..+|.++.+|..+|.++...|++++|+..|.+++++. |+++.+|+.+|.++...
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence 34456666788999999999999999999999999999999999999999999999999887 88999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
|++++|+..|+++ ++++|++..++..+..+..
T Consensus 85 ~~~~~A~~~~~~a-~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 85 NRFEEAKRTYEEG-LKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHhC
Confidence 9999999999998 7889999999988887754
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=9.1e-11 Score=101.29 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=60.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceE-EEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ-VYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~-l~V~~~r 1111 (1169)
.+.|+|+|+|++++++.| ++|++||+|.++++ ++.+|||||+|.+.++|++||+.||..|+|+. |.|...+
T Consensus 4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~-------~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~ 75 (81)
T d1wwha1 4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVM-------SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 75 (81)
T ss_dssp GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEE-------CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred ccEEEEECCChHHHHHHH-HHHHhhhhhheEEe-------cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCC
Confidence 478999999999987655 68999999988653 24578999999999999999988999999985 5677655
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 76 ~ 76 (81)
T d1wwha1 76 D 76 (81)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.4e-11 Score=112.42 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=67.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|++++.++++++|+++|++||+|++|.| + +..+|+++|||||+|.+.++|.+|++. +|..++||.|+|++.
T Consensus 28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I-~-~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s 103 (104)
T d1jmta_ 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-C-DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-C-CSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred chHHhhhhhhhhhHHHHHHHhccCCCEEEEEe-e-cCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence 46889999999999999999999999999865 4 446899999999999999999999986 999999999999863
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.7e-10 Score=115.75 Aligned_cols=80 Identities=19% Similarity=0.371 Sum_probs=72.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||+++|+++|+++|++||.|.++.+ +++..+|+++|||||+|.+.+++.+|+..++..++++.+.+....+
T Consensus 6 ~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~-~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 84 (183)
T d1u1qa_ 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 84 (183)
T ss_dssp HHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEe-eecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhhh
Confidence 489999999999999999999999999999875 5677889999999999999999999999999999999988876554
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
+
T Consensus 85 ~ 85 (183)
T d1u1qa_ 85 R 85 (183)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.5e-09 Score=108.29 Aligned_cols=81 Identities=12% Similarity=0.029 Sum_probs=42.8
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
...|+++.|+..|+++ .+.++.+|+.+|.++..+|++++|+..|++|+++. |+++.+|+.+|.++.+.|++++|+.
T Consensus 16 ~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence 4455555555555542 23444555555555555555555555555555544 4555555555555555555555555
Q ss_pred HHHHH
Q 001060 447 AYQLV 451 (1169)
Q Consensus 447 ~~~~a 451 (1169)
.|+++
T Consensus 92 ~~~kA 96 (192)
T d1hh8a_ 92 DLKEA 96 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=1.6e-08 Score=110.44 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACA------NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPE 426 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~ 426 (1169)
.|...+.++...+++++|+..|++++.++. .....|..++.++...|++++|+.+|++++.+.... ...
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 344556677889999999999999998853 224689999999999999999999999999987322 145
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHhhhcC---C---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-Cc
Q 001060 427 IHLFAARFKEQ-NGDIDGARAAYQLVHTETS---P---GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QT 498 (1169)
Q Consensus 427 l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~---P---~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~-~~ 498 (1169)
++..++.+++. .|++++|...|+++ +++. . ....++..++.++..+|++++|..+|++++...+..... ..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A-~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH-HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 67777777765 69999999999998 4332 1 235568999999999999999999999999987643221 12
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
...++...+.... ..|+++.|...|+++++.+|..
T Consensus 198 ~~~~~~~~~~~~l-~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 198 LKDYFLKKGLCQL-AATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCc
Confidence 2334444444433 4899999999999999988753
|
| >d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: mRNA transport regulator MTR2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=3.8e-10 Score=106.49 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=68.5
Q ss_pred chhHhHHHHHHHHhhh----hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCCC-c
Q 001060 721 AQVGSYFVGQYYQVLQ----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNG-G 795 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~----~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~~-~ 795 (1169)
.+|+..||++||..|+ +....|..||.+.++.+.|+|+.+.+...+ |.+++..||-+.++|.++|||+..+. .
T Consensus 3 ~qi~~~FvK~~ya~LD~~dpn~~~ql~~ly~p~~S~Iv~NGnpvag~~~~--lekf~~~lP~T~H~l~s~DcqpIpG~gT 80 (165)
T d1of5b_ 3 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNATPFAQATVF--LQMWQNQVVQTQHALTGVDYHAIPGSGT 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTEEESCHHHH--HHHHHHHSCCCEEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHHhcccChhHHHHHHhhcCCCCceEEECCCCcCcHHHH--HHHHHhcCCCeeEEEEEEeeeEcCCCcE
Confidence 4799999999999999 344457788888777778999998876654 33466779988999999999997754 5
Q ss_pred eEEEEEEEEEecCccccceeEEEEEE
Q 001060 796 VLVMVSGSVKTKEFCRRRKFVQTFFL 821 (1169)
Q Consensus 796 ilv~v~G~~~~~~~~~~~~F~q~F~L 821 (1169)
+||.|+|.+.+++. -+-|--|++.|
T Consensus 81 ~vi~~sgkVrfDes-gr~k~G~~~~~ 105 (165)
T d1of5b_ 81 LICNVNCKVRFDES-GRDKMGQDATV 105 (165)
T ss_dssp EEEEEEEEEECC--------------
T ss_pred EEEEEeeEEEECCC-CCCCCCCcccc
Confidence 77889999999876 35677888888
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=4.8e-09 Score=103.62 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
....+..+.+.|++++|+..|+++|..+|.+..+|..++.++...|++++|+..|++++++. |++..+|+.+|.++...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 33445556789999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
|++++|...|+++ +++.|++..++..+..+.
T Consensus 92 g~~~eA~~~~~~a-~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 92 GKFRAALRDYETV-VKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 9999999999998 788999999887776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=4.5e-09 Score=98.10 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=68.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
.|..+...|++++|..+|.++ ++++|.+..+|..++.++..+|++++|+..|++++.+.|. .+..|..++..+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~ 81 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEA-IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCcchhhhhcccccccccccccccchhhhhHHHhccc------hhhHHHHHHHHH
Confidence 344455666666666666666 5666666666666666666666666666666666666543 245666666665
Q ss_pred HHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 511 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 511 ~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
.. .|++++|...|+++++.+|++..++..+..++
T Consensus 82 ~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 82 EF-LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 55 66677777777777766666666666655544
|
| >d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=4.9e-10 Score=103.79 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=55.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCH-HHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI-SGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~-~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+||||||.++|+++|+++|++||+|.+|+| + +++|||||.|.+. ++|..|+.. ++..+.++.+.|..
T Consensus 12 ~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i-~------~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~ 82 (113)
T d1owxa_ 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-V------RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 82 (113)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-C------TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred eEEEECCCCCCCCHHHHHHHHHhcCChheEEE-e------cCCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEE
Confidence 45699999999999999999999999999775 2 2468999999985 678778766 77777666655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=7.3e-09 Score=105.81 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+|.+ +..+...|+++.|+..|.++ . +.++.+|+.+|.++...|++++|...|+++ ++++|++..+|..++.++
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i---~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kA-l~ldp~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAV---Q-DPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRDKHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTS---S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhc---C-CCCHHHHHHHHHHHHHcCCchhHHHHHHHH-HHHhhhhhhhHHHHHHHH
Confidence 56766 66667889999999999764 3 557899999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCc----------cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEH----------SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~----------~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.++|++++|...|++|+...+.+.. ......++..++..+.. .|++++|...|++|+++.|..
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999987543211 01124567788887766 999999999999999998864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=8.9e-09 Score=112.46 Aligned_cols=212 Identities=11% Similarity=0.054 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC-hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-----
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----- 389 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~-~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~----- 389 (1169)
+....+.+|...+++++|+..|++++.- +.+-.+ +.-...|...+.++.+.|++++|+..|++++...+..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~---~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADY---QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence 4455578899999999999999999871 111112 3345678889999999999999999999999886544
Q ss_pred -HHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--
Q 001060 390 -PEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-- 460 (1169)
Q Consensus 390 -~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-- 460 (1169)
..++..++..+.. .|++++|+..|++|++++... ...++..+|.++...|++++|..+|+++ ....+...
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~-~~~~~~~~~~ 194 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLS 194 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTSSCTTT
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH-HHhCccchhh
Confidence 4678888887765 599999999999999876432 2456888999999999999999999998 55555432
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHhhhcC
Q 001060 461 -----EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 461 -----~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~-~~g~~e~Ar~i~~kAl~~~p 532 (1169)
.+++..+.++...++++.|...|++++++++.-..+.. ..+...++..... ..+.+++|...|.++++++|
T Consensus 195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre-~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 45677778888899999999999999998763211111 1223333332111 02347888888877776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=6.3e-09 Score=102.71 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++..|...++|++|+..|+++|+ ++|.....|..++..+...|++++|+..|+++|..+|.+..+|+.+|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g 85 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIE--------LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccc--------cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence 3457788899999999999999999 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.++...|++++|...|++++.+. |+++.++..+..+.
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 99999999999999999999987 88898888876654
|
| >d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Alkylation repair AlkB homolog 8, ALKBH8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=9.3e-10 Score=99.50 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=53.5
Q ss_pred CceEEEEec--CCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1032 EVKSVYVRN--LPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1032 ~~~~i~V~n--lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
+.+++||+| ||.++|+++|+++|++||.|+.+.+ + +.+|||||+|.+.++|.+|+.. +|..|.
T Consensus 17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~-~------~~k~~aFV~f~~~e~A~~A~~~lng~~i~ 82 (101)
T d2cq2a1 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-P------PNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (101)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-C------TTCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEee-c------cCccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence 457888855 9999999999999999999998653 2 2357999999999999999977 888774
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=2e-09 Score=110.21 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
....+..+.+.|++++|+..|+++|..+|.++.+|..+|.++...|++++|+..|++|+++. |++...|+.+|.++...
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 34445555566777777777777777777777777777777777777777777777777655 66666677777777777
Q ss_pred CCHHHHHHHHHHHhhhcCCC
Q 001060 439 GDIDGARAAYQLVHTETSPG 458 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~ 458 (1169)
|++++|+..|+++ +++.|+
T Consensus 86 ~~~~~A~~~~~~a-l~l~p~ 104 (201)
T d2c2la1 86 ESYDEAIANLQRA-YSLAKE 104 (201)
T ss_dssp TCHHHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHH-HHhCcc
Confidence 7777777777666 444443
|
| >d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67 {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-like domain of mRNA export factor MEX67 species: Yeast (Candida albicans) [TaxId: 5476]
Probab=98.87 E-value=5.2e-09 Score=105.30 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=88.2
Q ss_pred hhHhHHHHHHHHhhhhCcccccccccCCceEEE-EcCC---------------c--------------cc--------ch
Q 001060 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR-VDGD---------------S--------------TE--------SA 763 (1169)
Q Consensus 722 ~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~-~~g~---------------~--------------~~--------~~ 763 (1169)
.|+..||++||+.+|++|..|..+|+++|.|.. .+.. . +. -.
T Consensus 3 ~i~~~Fl~~yf~~yDsdR~~Ll~~Y~~~s~FSlsv~~~~p~~~~~~~~~~~~~~~~~~Y~k~SRNL~ki~~~~~r~~~L~ 82 (205)
T d1q40b_ 3 NLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKLS 82 (205)
T ss_dssp HHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHHTCE
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHhcCCCCEEEEEccCCCccccccccccccCCcchhhHhhhcccccccCCHHHHHHHHh
Confidence 588999999999999999999999999998763 2210 0 00 02
Q ss_pred hhHHHHHHHHhcCCCcceeE------eeeecccc-CCCceEEEEEEEEEecC----------------------------
Q 001060 764 SSMLDIHSLVISLNFTAIEI------KTINSLGS-WNGGVLVMVSGSVKTKE---------------------------- 808 (1169)
Q Consensus 764 ~~~~~I~~~~~~l~~~~~~i------~~~d~q~~-~~~~ilv~v~G~~~~~~---------------------------- 808 (1169)
.|.++|.+.|.+||-+.+.+ -+|||..- ..++++|+|.|.+.--+
T Consensus 83 ~G~~~Iv~~l~~LPkT~Hdl~s~~~~f~vD~~~~~~~~~l~itVhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
T d1q40b_ 83 IGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHK 162 (205)
T ss_dssp EHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSSCCC
T ss_pred hCHHHHHHHHHHCCCCcccccCCCceEEEEeEecCCCCEEEEEEEeEEEeccCccccccccccccccccccccccccccc
Confidence 47789999999999777754 37888653 23689999999986310
Q ss_pred --ccccceeEEEEEEEeeC-CeEEEEcceEEecc
Q 001060 809 --FCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 839 (1169)
Q Consensus 809 --~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~~ 839 (1169)
....|.|.-||+|.|.+ +++.|.||+|..-.
T Consensus 163 ~~~~~~RsF~RTFil~P~~~g~~~I~nD~L~IR~ 196 (205)
T d1q40b_ 163 RIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRP 196 (205)
T ss_dssp CCCCCCEEEEEEEEEECC---CCEEEEEEEEEEE
T ss_pred cccccccceeEEEEEEecCCCcEEEEcCeEEEec
Confidence 01257899999999986 67999999996543
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.8e-09 Score=95.89 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=64.2
Q ss_pred CceEEEEecC--CCCCC---------HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1032 EVKSVYVRNL--PSTVT---------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1032 ~~~~i~V~nl--p~~~t---------~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
.++.|+|+|+ |.++. .++|++.|++||.|..|.+ .. +..+|||||+|++.++|.+|+.. +|..
T Consensus 7 ~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~--~~---~~~~G~~fV~f~~~e~A~~A~~~lng~~ 81 (99)
T d2dita1 7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL--FD---RHPDGVASVSFRDPEEADYCIQTLDGRW 81 (99)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE--ET---TCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEec--cC---CCCccEEEEEECCHHHHHHHHHHhCCcE
Confidence 4589999999 54432 3689999999999998653 22 24679999999999999999977 8999
Q ss_pred eeceEEEEEeccCCC
Q 001060 1100 LAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1100 i~g~~l~V~~~r~~~ 1114 (1169)
|+||.|+|++..++.
T Consensus 82 ~~gr~i~v~~~~g~~ 96 (99)
T d2dita1 82 FGGRQITAQAWDGTT 96 (99)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCEEEEEEEeCCcC
Confidence 999999999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.5e-09 Score=128.46 Aligned_cols=81 Identities=7% Similarity=-0.000 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
..+..+++.+...+++++|+..|++|+...|.+...|..+|.++...|+..+|...|.||+.+. +.++.++..++.++.
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 4577778888888999999999999999999999999999999888999999999999999876 668888888877665
Q ss_pred Hc
Q 001060 437 QN 438 (1169)
Q Consensus 437 ~~ 438 (1169)
+.
T Consensus 232 ~~ 233 (497)
T d1ya0a1 232 KA 233 (497)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=5.9e-09 Score=123.14 Aligned_cols=138 Identities=7% Similarity=-0.084 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 324 y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
+...+.|..++..|..++. +++.....|..++..+.+.|+.+.++..|++++..++. .+++.+|.++...
T Consensus 96 ~~a~~~Y~~ai~~l~~~~~--------l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~ 165 (497)
T d1ya0a1 96 EAASGFYTQLLQELCTVFN--------VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYR 165 (497)
T ss_dssp HHHHHHHHHHHHHHTC---------------------------------------CCHHHHHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHC--------CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHc
Confidence 3445566677777776665 66777888999998888999999999999999987764 6899999999999
Q ss_pred CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 404 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
+++++|+..|.+|+++. |++...|..+|.++...|+..+|...|.++ +.+.|....++.+++.+..+.
T Consensus 166 ~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra-l~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 166 NQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRS-IAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp TCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHH-HSSSBCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988 899999999999999999999999999999 788999999999888766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.83 E-value=9.6e-09 Score=94.95 Aligned_cols=94 Identities=16% Similarity=0.033 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
..|...+..+.+.|++++|+..|++++..+|.++++|..++.++...+++++|+..|++++++. |++..+|+.+|.++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 4567777777788888888888888888888888888888888888888888888888888877 778888888888888
Q ss_pred HcCCHHHHHHHHHHH
Q 001060 437 QNGDIDGARAAYQLV 451 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a 451 (1169)
..|++++|.+.|++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888888775
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.82 E-value=9.9e-09 Score=94.87 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
+.|+.++..+.. .|++.+|...|++++..+|++..+|..++.++.+.+++++|+..|+++|..+|.+.+.|+.++..+
T Consensus 17 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLK--LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 446777777777 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 001060 180 INTYGDPETIRRLFERGL 197 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl 197 (1169)
. ..|+.++|.+.|+|.|
T Consensus 95 ~-~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 T-NEHNANAALASLRAWL 111 (112)
T ss_dssp H-HHHHHHHHHHHHHHHH
T ss_pred H-HCCCHHHHHHHHHHHh
Confidence 8 7899999999999886
|
| >d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-like domain of mRNA export factor MEX67 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=6.5e-09 Score=105.34 Aligned_cols=118 Identities=14% Similarity=0.288 Sum_probs=90.1
Q ss_pred chhHhHHHHHHHHhhhhCcccccccccCCceEEE-EcCC------c--------------------c--------cchhh
Q 001060 721 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR-VDGD------S--------------------T--------ESASS 765 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~-~~g~------~--------------------~--------~~~~~ 765 (1169)
.++...||++||+.+|++|..|..+|+++|.|.. .+-. . . .-..|
T Consensus 11 ~~lv~~FL~~Yf~~yDsdR~~Ll~~Y~~~A~FSlsv~~~~p~~~~~~~~~~~~~~~Y~k~SRNL~ki~~~~~r~~~L~~G 90 (221)
T d1of5a_ 11 GQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSIG 90 (221)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------CBH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCcCCEEEEEecCCCCCccccCccCCcchHHHHhhcccccccCCHHHHHHHHhhC
Confidence 4689999999999999999999999999988763 2110 0 0 01247
Q ss_pred HHHHHHHHhcCCCcceeEe------eeecccc-CCCceEEEEEEEEEecCc-----------------------------
Q 001060 766 MLDIHSLVISLNFTAIEIK------TINSLGS-WNGGVLVMVSGSVKTKEF----------------------------- 809 (1169)
Q Consensus 766 ~~~I~~~~~~l~~~~~~i~------~~d~q~~-~~~~ilv~v~G~~~~~~~----------------------------- 809 (1169)
.++|.+.|.+||-+.+.|. +|||-.. ..+|++|+|.|.+.--+.
T Consensus 91 ~~~Iv~~l~~LPkT~Hdl~~~p~~f~vd~~~~~~~~~l~itvhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (221)
T d1of5a_ 91 QESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSN 170 (221)
T ss_dssp HHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------CC
T ss_pred HHHHHHHHHHCCCccccccCCCceEEEEEEEcCCCCEEEEEEeEEEEeccCccccccccccccccccccccccccccccc
Confidence 7899999999998877652 6887542 235799999999974211
Q ss_pred --cccceeEEEEEEEeeCCeEEEEcceEEec
Q 001060 810 --CRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838 (1169)
Q Consensus 810 --~~~~~F~q~F~L~~~~~~y~v~nDifr~~ 838 (1169)
...|.|.-||+|.|.++++.|.||++-.-
T Consensus 171 ~~~~~RsFdRTFil~P~~~g~~I~nD~L~iR 201 (221)
T d1of5a_ 171 NKLSKKSFDRTWVIVPMNNSVIIASDLLTVR 201 (221)
T ss_dssp SCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccccccceeEEEEEecCCCcEEEEeCeEEEe
Confidence 12578999999999989999999999553
|
| >d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein, TAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-like domain of Tip associating protein, TAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.3e-08 Score=101.23 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred chhHhHHHHHHHHhhhh-CcccccccccCCceEEEE-cCC----c----------------cc--------chhhHHHHH
Q 001060 721 AQVGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRV-DGD----S----------------TE--------SASSMLDIH 770 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~-~g~----~----------------~~--------~~~~~~~I~ 770 (1169)
..+...||++||+.+|+ +|..|..+|+++|.+..- +.. . .. -..|.++|.
T Consensus 15 ~~lv~~Fl~~yf~~yDs~dR~~Ll~~Y~~~a~FSlsv~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~r~~~l~~G~~~Iv 94 (186)
T d1jkgb_ 15 KSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVV 94 (186)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcCHHHHHHhcCcccEEEEecCCCCCCCCccchHHHhhhCcCccccCCHHHHHHHHhhCHHHHH
Confidence 35889999999999997 999999999998877632 110 0 00 113678999
Q ss_pred HHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEecCc---cccceeEEEEEEEeeC-CeEEEEcceEEec
Q 001060 771 SLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTKEF---CRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 838 (1169)
Q Consensus 771 ~~~~~l~~~~~~i~--~~d~q~~~~~~ilv~v~G~~~~~~~---~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 838 (1169)
+.|.+||-+.+.+. .+|..--...+++|.|.|.+.-.+. ...|.|+-||+|.|.+ ++|.|+||.+-.-
T Consensus 95 ~~l~~LP~T~Hd~~sf~vD~~~~~~~~l~itV~G~F~E~~~~~~~~~rsF~RTFil~P~~~~~~~I~nD~L~Ir 168 (186)
T d1jkgb_ 95 AFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVR 168 (186)
T ss_dssp HHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEE
T ss_pred HHHHHCCCceecccccceeEeeccCCEEEEEEeeEEEecCCCCCcceeEEEEEEEEeecCCCceEEEecEEEEE
Confidence 99999998877544 4565433345799999999875321 2368899999999976 6899999999554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=4.2e-08 Score=99.97 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
-....|..+...|++++|+..|++|+++. |+++.+|..+|.++.+.|++++|+..|+++ ++++|++..+|+.++.++.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a-l~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHH-HHhCCCcHHHHHHHHHHHH
Confidence 34566888889999999999999999988 899999999999999999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhCC
Q 001060 472 RLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
++|++++|...|++|+.+.|..
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999988753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.6e-07 Score=93.52 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYP---------------EYWIRYVLCMEASGSMDLAHNALARATHVFVK 422 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---------------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p 422 (1169)
.++..+..+.+.|++++|+..|+++|..++... .+|..++.++.+.|++++|+..+++++.+. |
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 455566666788999999999999999877543 234445555555555555555555555544 4
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 423 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 423 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+++.+|+..|.++...|++++|+..|+++ ++++|++..+...+..+..
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555 4555555555544444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.6e-07 Score=91.91 Aligned_cols=115 Identities=9% Similarity=-0.030 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKR--------------LPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--------------~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
..+...|..+...|++++|+..|++|+.+++.. ...+|..+|.++.+.|++++|...++++ ++++
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a-l~~~ 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA-LELD 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh-hhcc
Confidence 455566777888999999999999999987322 1256677899999999999999999998 8899
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
|++..+|+.++.++..+|++++|+..|++++++.|++ +.+...++.+..+
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQR 142 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998643 5566556555433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=5.1e-08 Score=91.34 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=88.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHc
Q 001060 363 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG---SMDLAHNALARATHVFV-KRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 363 l~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g---~~e~A~~vl~rAl~~~~-p~~~~l~~~~a~~~e~~ 438 (1169)
+......+++++|...|+++|..+|.++++++.||.+|.+.+ ++++|+.+|++++...+ +....+|+.+|.++.+.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~ 85 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 444456678899999999999999999999999999987644 45679999999987652 22346889999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|++++|+.+|+++ ++++|++..+......++.+
T Consensus 86 g~~~~A~~~~~~a-L~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 86 KEYEKALKYVRGL-LQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp TCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHH
Confidence 9999999999998 78899998887766665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.63 E-value=3.6e-07 Score=90.68 Aligned_cols=147 Identities=10% Similarity=0.010 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.++..+..+-+.|++..|+..|++||..++....+... .. ... . .....++..+|.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~------------~~-~~~-~------~~~~~~~~Nla~~~ 74 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK------------ES-KAS-E------SFLLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------HH-HHH-H------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh------------hh-hhc-c------hhHHHHHHhHHHHH
Confidence 4556666666666777777777777777654432211110 00 000 0 01123555667777
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
...|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.++|++ +.++..+..+......
T Consensus 75 ~~l~~~~~Ai~~~~~a-l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 75 LKLREYTKAVECCDKA-LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhh-hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHh
Confidence 7777777777777777 66777777777777777777777777777777777776532 4455454444333222
Q ss_pred CHHHHHHHHHHHhh
Q 001060 516 NAEKARQILVDSLD 529 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~ 529 (1169)
..+..+++|.+.++
T Consensus 148 ~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 148 HNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 22344454444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.60 E-value=2.2e-07 Score=90.78 Aligned_cols=114 Identities=16% Similarity=0.072 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
|+.-+.-+-+.|++.+|+..|+++|..++...... +.......+.+. ..+|..+|.++.+.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~~------~~~~~Nla~~~~~l 80 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNIE------ISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhHH------HHHHhhHHHHHHHh
Confidence 45555555678999999999999998776433110 000000111111 12445566666666
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++++|+..|.++ ++++|.+..+|+.++.++..+|++++|+..|+++++++|.
T Consensus 81 ~~~~~Al~~~~~a-l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 81 KDYPKAIDHASKV-LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp TCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cccchhhhhhhcc-ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666 5666666666666666666666666666666666666653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.58 E-value=3.3e-07 Score=91.02 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
+..++..|...+++.+|+..|.++|+. . .... ........+...|....+|..+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--------~-----------~~~~-------~~~~~~~~~~~~~~~~~~~~nl 83 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--------V-----------EGSR-------AAAEDADGAKLQPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------H-----------HHHH-------HHSCHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------h-----------hhhh-------hhhhhHHHHHhChhhHHHHHHH
Confidence 344566777888999999999998761 0 1100 1111222333445566777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+.++.+.|++++|+..|++++++. |+++.+|+.+|..+...|++++|+..|+++ ++++|++..++..+..+..+....
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a-l~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHH
Confidence 887878888888888888888776 778888888888888888888888888887 677888887777777776655444
Q ss_pred HH
Q 001060 477 ED 478 (1169)
Q Consensus 477 e~ 478 (1169)
.+
T Consensus 162 ~~ 163 (169)
T d1ihga1 162 KD 163 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.2e-08 Score=90.90 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=63.3
Q ss_pred CceEEEEecC--CCCCC--------HHHHHHHHhcCCCeeeeeEEeecCCC--cccccEEEEEECCHHHHHHHHHh-CCC
Q 001060 1032 EVKSVYVRNL--PSTVT--------AFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPI 1098 (1169)
Q Consensus 1032 ~~~~i~V~nl--p~~~t--------~~~L~~~F~~~G~i~~~~i~~~~~~~--g~~~g~afV~F~~~~~a~~Ai~~-~~~ 1098 (1169)
+++.|.|+|+ |.++. .++|++.|++||.|++|.| .++..+ ....|++||+|.+.++|.+|+.. +|.
T Consensus 3 Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I-~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr 81 (104)
T d1o0pa_ 3 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81 (104)
T ss_dssp CCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEEC-CCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSC
T ss_pred CCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEE-eecCCCCccCCceEEEEEECCHHHHHHHHHHHCCC
Confidence 4578999999 54442 3578999999999999764 333322 34568999999999999999986 999
Q ss_pred eeeceEEEEEecc
Q 001060 1099 QLAGRQVYIEERR 1111 (1169)
Q Consensus 1099 ~i~g~~l~V~~~r 1111 (1169)
.++||.|.|.+..
T Consensus 82 ~f~gR~v~v~f~~ 94 (104)
T d1o0pa_ 82 KFANRVVVTKYCD 94 (104)
T ss_dssp CSSSSCCEEEEEC
T ss_pred EECCeEEEEEEcC
Confidence 9999999998864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.57 E-value=7e-07 Score=88.52 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
..++..++.++...|++++|+..+++++.+. |++..+|+..|.++...|++++|+..|+++ ++++|++..++..+..+
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a-l~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSCTTCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHH
Confidence 4577889999999999999999999999988 899999999999999999999999999998 89999999998888887
Q ss_pred HHHcCCHH-HHHHHHHHHHHh
Q 001060 470 ERRLGNLE-DAFSLYEQAIAI 489 (1169)
Q Consensus 470 e~r~g~~e-~A~~iy~~Al~~ 489 (1169)
..+.+... ....+|.+....
T Consensus 142 ~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhh
Confidence 76665442 344555544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=1e-07 Score=92.35 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=82.1
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS----------GSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~----------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
++.+.+++|+..|++++..+|+++++|+.++.++... +.+++|+..|++|+++. |+++.+|+.+|.++.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 4566788999999999999999999999999888643 34678999999999887 889999999988876
Q ss_pred HcC-----------CHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 437 QNG-----------DIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 437 ~~g-----------~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
..| .+++|...|+++ ++++|++...+..+...
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~ka-l~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQA-VDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcc-cccCCCHHHHHHHHHHH
Confidence 654 357788888887 78888887766665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=3.9e-07 Score=88.01 Aligned_cols=110 Identities=13% Similarity=0.022 Sum_probs=89.4
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--- 149 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--------~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~--- 149 (1169)
++.+++.|+++|+.+|+|.++|..++..+..++ .+.+++|+..|+++|+++|.+...|..++.++..+|
T Consensus 13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~ 92 (145)
T d1zu2a1 13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 92 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence 568899999999999999999999998876431 246789999999999999999999999999987764
Q ss_pred --------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001060 150 --------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 198 (1169)
Q Consensus 150 --------~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~ 198 (1169)
.+++|.+.|+++|...|.+...+..+.... ++.+++..+.+
T Consensus 93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~--------ka~~~~~e~~k 141 (145)
T d1zu2a1 93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA--------KAPQLHAEAYK 141 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------THHHHHHHHHH
T ss_pred hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 478999999999999998887665554433 35555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=4.1e-07 Score=90.29 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH
Q 001060 363 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 363 l~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~ 442 (1169)
+..+...|++.+|+..|.+||...+.. ..... ....+.+. |....+|..+|.++.+.|+++
T Consensus 34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~-----------~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~~~~~~~ 94 (169)
T d1ihga1 34 GNTFFKSQNWEMAIKKYTKVLRYVEGS-----------RAAAE-------DADGAKLQ-PVALSCVLNIGACKLKMSDWQ 94 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHSC-------HHHHGGGH-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhh-----------hhhhh-------hHHHHHhC-hhhHHHHHHHHHHHHhhcccc
Confidence 333456789999999999998643211 11111 11223333 566788899999999999999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 443 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 443 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+|+..|.++ ++++|++..+|+.++.++.++|++++|+..|++++++.|++ +.++..+..+..+
T Consensus 95 ~Ai~~~~~a-l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n------~~~~~~l~~~~~~ 157 (169)
T d1ihga1 95 GAVDSCLEA-LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred hhhhhhhhh-hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 999999998 89999999999999999999999999999999999998753 4455555444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.5e-07 Score=86.54 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhccCC--HHHHHHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACANY--PEYWIRY 396 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~---gd~~~a~~lyeraL~~~~~~--~e~W~~~ 396 (1169)
..+...+++++|.+.|+++|. ++|...+.+++|+.++.+. +++++|+.+|+++|...+.. .++|+.+
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~--------~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKA--------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 345678899999999999999 7889999999999988654 45668999999999876543 5699999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
|.++...|++++|+.+|++++++. |++..+......++.+
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~-P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTE-PQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 999999999999999999999988 8888887777665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.4e-06 Score=82.06 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH-------HHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE-------IHL 429 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~-------l~~ 429 (1169)
..++..+..+...|++++|+..|+++|..+|.+..+|..++.++...|++++|+..|++++++. |++.. +|+
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3477788888889999999999999999999999999999999999999999999999999987 55554 444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
.++..+...+++++|+..|+++ +..++
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ka-l~~~~ 110 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKS-LAEHR 110 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-HhcCC
Confidence 4555556666666666666665 33344
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.45 E-value=2e-06 Score=83.73 Aligned_cols=102 Identities=11% Similarity=-0.050 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|..-|.-+.+.|++++|+..|.+|+.+++ ..... .+.......+. ....++.+++.++.+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~-~~~~~-------------~~~~~~~~~~~------~~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEW-------------DDQILLDKKKN------IEISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTC-------------CCHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-chhhh-------------hhHHHHHhhhh------HHHHHHhhHHHHHHH
Confidence 34445555567888888888888887652 21110 00000000111 023467778888888
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH
Q 001060 473 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 521 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar 521 (1169)
+|++++|+..|+++|+++|.+ ...|...+..+.. .|++++|+
T Consensus 80 l~~~~~Al~~~~~al~~~p~~------~ka~~~~g~~~~~-lg~~~~A~ 121 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDKNN------VKALYKLGVANMY-FGFLEEAK 121 (153)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH-HTCHHHHH
T ss_pred hcccchhhhhhhccccccchh------hhhhHHhHHHHHH-cCCHHHHH
Confidence 999999999999999887642 5678888888776 88888774
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.7e-06 Score=81.36 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYAQY 506 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~-~~~~~l~~~~ 506 (1169)
+...|..+.+.|++++|+.+|.++ ++++|++..+|..++.++.++|++++|+..|+++|++.+..... ..+..+|...
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKA-KELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445777788899999999999998 78999999999999999999999999999999999988754221 1123456777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
+..+.. .+++++|..+|++++...++ ..+...+
T Consensus 86 g~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l 118 (128)
T d1elra_ 86 GNSYFK-EEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (128)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHHH-hCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 777776 89999999999999988765 4444333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=6.6e-05 Score=79.28 Aligned_cols=95 Identities=6% Similarity=-0.008 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
|.++|+.|+..+.. ++++.+|.++|+++.+. .+...+..++.++.. ..++.++...|+++... .+...+.
T Consensus 1 ~p~~~~~lG~~~~~--~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYK--EKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhh
Confidence 45567777666665 34677777777777653 456666667766665 44666676666666654 2444444
Q ss_pred HHHHHHHh---hcCCHHHHHHHHHHHHH
Q 001060 174 HYCIFAIN---TYGDPETIRRLFERGLA 198 (1169)
Q Consensus 174 ~y~~~~~~---~~~~~e~Ar~~~erAl~ 198 (1169)
.++.+... ...+.+.+...|++++.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~ 102 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACD 102 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhh
Confidence 44443331 12344555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.21 E-value=1.2e-06 Score=93.46 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=106.2
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
.+.|++++|+..|+++|..+|.+.++|..++.+|...|++++|+..|++++++. |+...++..++.++...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHH
Confidence 457999999999999999999999999999999999999999999999999988 8899999999988876666555554
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
.+.+......|.....++..+.+..+.|+.++|+.+++++.+..|.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4443323335666677788888899999999999999999999864
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.00022 Score=75.11 Aligned_cols=63 Identities=3% Similarity=-0.015 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHH
Q 001060 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLA 198 (1169)
Q Consensus 134 ~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~---~~~~~e~Ar~~~erAl~ 198 (1169)
|+..|+.++....+.+++++|++.|+++... .+.+.++.++.++.. ...++..++..|+++..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 4678999999999999999999999999875 588889888888773 24578889888988887
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.07 E-value=2.8e-06 Score=90.46 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=99.5
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
+.+.|++++|+..|+++++.. |++..++..++.++...|++++|+..|+++ ++++|++...+..++.+....+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a-~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS-IKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 345799999999999999988 899999999999999999999999999998 789999999999988887655544443
Q ss_pred HHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 480 ~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
...+.+..... .+.....+...+..... .|+.++|+.+++++++..|....+|.
T Consensus 84 ~~~~~~~~~~~-----~p~~~~~~l~~a~~~~~-~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 84 AQGAATAKVLG-----ENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp TTSCCCEECCC-----SCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHhhhhhccc-----CchHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 33222221111 12222334444555554 89999999999999999998876653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=3.3e-05 Score=76.79 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhCCHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----------------------GYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~----------------------~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
|+++...+..+.. .|+.++|...|.++|.+++... .+|..++..+.+.|++++|+.
T Consensus 11 f~~~~~~g~~~~~--~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 11 FVAEKTAGVHAAA--AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 5666666666655 4588888888888888877542 567888888899999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 199 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~ 199 (1169)
.++++|..+|.+..+|..++..+. ..|+.++|++.|+++...
T Consensus 89 ~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 89 ELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Confidence 999999999999999999988888 789999999999888653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.2e-05 Score=69.24 Aligned_cols=87 Identities=15% Similarity=-0.003 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.+-++.++....+.|++++|+..|++|+.+.+.... ..+...++.+++..+++ .|++++|+..|+++|+++|++...+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHHH
Confidence 345678899999999999999999999998775332 23446788888988887 9999999999999999999999999
Q ss_pred HHHHHhHhh
Q 001060 539 EALIHFESI 547 (1169)
Q Consensus 539 ~~~a~~E~~ 547 (1169)
.++..++..
T Consensus 84 ~Nl~~~~~~ 92 (95)
T d1tjca_ 84 GNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2.6e-05 Score=68.77 Aligned_cols=83 Identities=13% Similarity=-0.034 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.+-++.+|..+.+.|+++.|+..|++|+++.+. +...++..+|..+.+.|++++|+..|+++ ++++|++..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a-L~l~P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-LELDPEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH-HHhCcCCHHH
Confidence 4566778888888888888888888888877632 12467777888888888888888888887 7788888888
Q ss_pred HHHHHHHHHH
Q 001060 463 IIKHANMERR 472 (1169)
Q Consensus 463 ~~~~a~~e~r 472 (1169)
+.+++.++..
T Consensus 83 ~~Nl~~~~~~ 92 (95)
T d1tjca_ 83 NGNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.85 E-value=9.5e-05 Score=71.49 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=62.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 365 FIERDGDFNKVVKLYERCLIACANYP------------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 365 ~~~~~gd~~~a~~lyeraL~~~~~~~------------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
.....|++++|+..|+++|..++..+ .+|..++.++...|++++|...+++++.+++ +
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~-~--------- 87 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN-R--------- 87 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H---------
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc-c---------
Confidence 34455667777777777776665432 3455555555556666666555555555431 0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
. ....+. ...++++++.++..+|++++|+..|++|+++.+.
T Consensus 88 ------------------~-~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 88 ------------------R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp ------------------H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------c-ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 0 111222 2345778889999999999999999999998764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.79 E-value=4e-05 Score=74.26 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc----
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH---- 495 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~---- 495 (1169)
+......|++++|...|+++ +++.|+ ...+|.+++..+..+|++++|...|+++|.+.+....
T Consensus 16 g~~~~~~g~y~~Ai~~y~~A-l~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRA-MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence 33444555666666666665 444333 2356888899999999999999999999987652111
Q ss_pred -cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 496 -SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 496 -~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
.+....++.+++..+.. .|++++|...|++|+++.|.
T Consensus 95 ~~~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence 11223356778888776 99999999999999987653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=5.4e-05 Score=75.19 Aligned_cols=125 Identities=13% Similarity=-0.013 Sum_probs=95.5
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
|-...+.+...+.-....|+++.++..|.++|...+...-.++....+.. .+...+. +....++..+
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~------------~~r~~l~-~~~~~a~~~l 73 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE------------PFATALV-EDKVLAHTAK 73 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH------------HHHHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHH------------HHHHHHH-HHHHHHHHHH
Confidence 34445666777777788999999999999999987765433322221111 1111111 3456788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+..+...|++++|+..++++ ++++|.+..+|..++..+.+.|+..+|+..|+++....
T Consensus 74 a~~~~~~g~~~~Al~~~~~a-l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L 131 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEAL-TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHH-HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999998 88999999999999999999999999999999986643
|
| >d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: mRNA transport regulator MTR2 species: Yeast (Candida albicans) [TaxId: 5476]
Probab=96.96 E-value=0.00078 Score=62.34 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=76.7
Q ss_pred CcchhHhHHHHHHHHhhh-hCccccccccc-------------CCceEEEEcCCcccc--h-hhHHHHHHHHhcCCCcce
Q 001060 719 YPAQVGSYFVGQYYQVLQ-QQPDLVHQFYS-------------DASSMIRVDGDSTES--A-SSMLDIHSLVISLNFTAI 781 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~-------------~~s~~~~~~g~~~~~--~-~~~~~I~~~~~~l~~~~~ 781 (1169)
.|.++..-||+.....|+ +.+..|..|.. +.++-+.|+|..+.. . .+-....+++.+.+.+.+
T Consensus 2 dpsq~~e~F~KkiLa~LD~~~~~~~~q~~~~~~~~~~~~~~~l~~~~kII~NgtP~~~~~~~~~~~~Fl~~w~qvp~TqH 81 (174)
T d1q42a_ 2 DPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSSH 81 (174)
T ss_dssp CGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEEE
T ss_pred CHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHhcccCCCCCcEEEEcCcccccccccccHHHHHHHHHhccceee
Confidence 478999999999999998 66666655553 234556689988632 1 233446778889999999
Q ss_pred eEeeeeccccCC-CceEEEEEEEEEecCccccceeEEEEEEEe
Q 001060 782 EIKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAP 823 (1169)
Q Consensus 782 ~i~~~d~q~~~~-~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~ 823 (1169)
.++++||+..++ |+++|.|+|.+.+++. -.-|.-|.+.|..
T Consensus 82 ~Lts~D~H~IPGtgt~i~nv~~KVRFDEs-Grdk~Gq~a~l~~ 123 (174)
T d1q42a_ 82 QLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGESADLFQ 123 (174)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCCC----
T ss_pred eeeeeeeeeeCCCceEEEEeeeEEEecCc-CCCcCCCcceeec
Confidence 999999999765 4578889999999876 4677889888854
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.005 Score=55.71 Aligned_cols=81 Identities=12% Similarity=-0.026 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 389 YPEYWIRYVLCMEASG---SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g---~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
..+..+.||..|.+.. ++++++.+|+.++...+.+..+.|+.+|..+.+.|++++|+..++++ +++.|++..+...
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~-L~ieP~n~qA~~L 112 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVGAL 112 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HccCCCcHHHHHH
Confidence 4678888888887654 45678888888887663334578888888888889999999998887 7888988877655
Q ss_pred HHHHH
Q 001060 466 HANME 470 (1169)
Q Consensus 466 ~a~~e 470 (1169)
.-.++
T Consensus 113 ~~~Ie 117 (124)
T d2pqrb1 113 KSMVE 117 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0056 Score=55.37 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=74.5
Q ss_pred CCCCchHHHHHHHHHHhC--C-CCHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHH
Q 001060 78 VPAMSGEEDRLWNIVKAN--S-SDFSAWTALLEETEKL-AQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMD 152 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~n--P-~d~~aw~~L~~~~~~~-~~~~i~~Ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e 152 (1169)
.|....+++.|++.+..- + -..++.+.++-.+.++ ...++.+++.+++.++..+|... ++|+.++-.+.+.|+++
T Consensus 11 ~pl~~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~ 90 (124)
T d2pqrb1 11 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS 90 (124)
T ss_dssp SCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHH
Confidence 355667777777654433 2 2367777777655532 13578999999999999999874 89999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHH
Q 001060 153 KVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 153 ~A~~l~eraL~~~P~s~~lw 172 (1169)
+|++.++++|++.|.+...+
T Consensus 91 ~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 91 MAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHccCCCcHHHH
Confidence 99999999999999997664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.38 E-value=0.011 Score=54.67 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARA 446 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~ 446 (1169)
|+++|+.+|+++... .++..++.++.. ...+.++|...|+++.+ ..++...+.++.++.. ..++++|..
T Consensus 8 d~~~A~~~~~kaa~~--g~~~a~~~l~~~--~~~~~~~a~~~~~~aa~---~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL--NEMFGCLSLVSN--SQINKQKLFQYLSKACE---LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHT--TCTTHHHHHHTC--TTSCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CChhhhhhhccc--cccCHHHHHHHHhhhhc---ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 678899999998765 345556666542 24578999999999987 4678888999988876 467899999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~ 490 (1169)
.|+++. + -++....+.++.++.. ..++++|..+|++|.+..
T Consensus 81 ~~~~aa-~--~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKAC-G--LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHH-H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhh-c--cCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 999983 3 3567788888888876 458999999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.25 E-value=0.017 Score=53.28 Aligned_cols=111 Identities=9% Similarity=-0.100 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAF 480 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~ 480 (1169)
++++|+..|+++++.. ++...+.++.. ...+.++|...|+++. ..++....+.++.++.. ..++++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~~--~~~~~~~a~~~~~~aa---~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVSN--SQINKQKLFQYLSKAC---ELNSGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHTC--TTSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhccc--cccCHHHHHHHHhhhh---cccchhhhhhHHHhhhhccccchhhHHHH
Confidence 6788999999998743 55555555532 3468899999999983 34678888888888765 35789999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHhhhc
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kAl~~~ 531 (1169)
.+|+++.+... +.....++.++.. ...|+++|+++|++|.+.-
T Consensus 80 ~~~~~aa~~g~--------~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLND--------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCc--------chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999998752 4456667666554 2458999999999998754
|
| >d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Synaptojanin 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.021 Score=47.42 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1048 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1048 ~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
.+|-+.|+.||+|.-+++ +. +--.|+|.+-.+|.+|+..+++++.|+.|+|.-+.
T Consensus 39 ~~Llq~l~~~GeViLvRF-v~--------d~mwVTF~dG~SAL~al~l~g~~v~G~~l~It~~~ 93 (95)
T d1ufwa_ 39 TELMQTLGSYGTIVLVRI-NQ--------GQMLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEE-ET--------TEEEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHHhhCCeEEEEEE-eC--------CeEEEEECCcHHHHHHhccCCeEEcceEEEEecCC
Confidence 467888999999976542 21 35799999999999999999999999999997654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=6 Score=43.23 Aligned_cols=182 Identities=10% Similarity=0.067 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLD-FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~-~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~ 406 (1169)
++.+.++..+.....+ .+..+.+...+...+. .....+..+.+..++...+.........+-.... ....++.
T Consensus 228 ~d~~~a~~~l~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~ 301 (450)
T d1qsaa1 228 QDAENARLMIPSLAQA-----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDR 301 (450)
T ss_dssp HCHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCH
T ss_pred cChhHHHHHHHhhhhc-----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCCh
Confidence 3445555555554432 1233333333333332 2223455677777777776554444333333333 3346788
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--------------------------
Q 001060 407 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-------------------------- 460 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-------------------------- 460 (1169)
..+...+...-. .+...+...+=.|+.++..|+.+.|...|..+ .. .+++.
T Consensus 302 ~~~~~~~~~l~~-~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~-a~-~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 302 RGLNTWLARLPM-EAKEKDEWRYWQADLLLERGREAEAKEILHQL-MQ-QRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (450)
T ss_dssp HHHHHHHHHSCT-TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT-SCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred HHHHHHHHhcCc-ccccHHHHHHHHHHHHHHcCChhhHHHHHHHH-hc-CCChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence 888877765432 22334555555678899999999999999985 21 12110
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 461 ---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 461 ---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
.--+..+..+...|....|+..+..++...+ +.-...++.+... .|.++.|.....++
T Consensus 379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~--------~~~~~~la~lA~~-~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--------KTEQAQLARYAFN-NQWWDLSVQATIAG 439 (450)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred hhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC--------HHHHHHHHHHHHH-CCChhHHHHHHHHH
Confidence 0124445555666777777776666554321 2233345555554 77777776666555
|
| >d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Smg-4/UPF3 domain: RNA processing protein UPF3x, RRM domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.22 Score=41.90 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=52.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcc--cccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV--GVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~--~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
++|-|+.||+..|++++.+.++..|.+..... +..+.+.+ ...-|+|.|.+.+++..-.+. +|+.+-+
T Consensus 2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f-~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D 72 (91)
T d1uw4a_ 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEF-FSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEE-EESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred ceEEEecCCCCCCHHHHHHHhCCcCceEEEEE-eCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence 57899999999999999999998888876432 33222222 236789999999999888877 7887754
|
| >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Limkain-b1, LKAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.56 E-value=0.39 Score=37.66 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1048 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1048 ~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+.|.+.|+++|.|.++.+.. ...|. -.|-|.-.+..+|.-|+.. +...|++++|.|....
T Consensus 11 q~L~~~f~~h~~V~sv~l~~--~~dg~--~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~ 71 (73)
T d2dgxa1 11 QLLQEAFARHGKVKSVELSP--HTDYQ--LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 71 (73)
T ss_dssp HHHHHHHHHHSCEEEEEECS--CCSTT--CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred HHHHHHHHhheeEEEEEEEe--ccCCc--EEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence 34567889999999976533 22233 3689999999999999987 8999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.28 E-value=12 Score=38.94 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH----------HHHh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARA----------THVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 459 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rA----------l~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~ 459 (1169)
.+|-.++-++.+.|.++.|..++-.- +++. ...++++|.....++.... .+-...++..+...+++
T Consensus 175 ~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~~~d~-- 251 (336)
T d1b89a_ 175 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSPRLDH-- 251 (336)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC-GGGHHHHHHHHGGGCCH--
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcC-HHHHHHHHHHhccCCCH--
Confidence 35777777677778887776443210 1100 0234555555444443321 11122222222111121
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001060 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 522 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~ 522 (1169)
.+.+.+..+.+++.-+...++...... ...+...+.+++.. .+|++.-|+
T Consensus 252 ----~r~V~~~~k~~~l~li~p~Le~v~~~n--------~~~vn~al~~lyie-~~d~~~l~~ 301 (336)
T d1b89a_ 252 ----TRAVNYFSKVKQLPLVKPYLRSVQNHN--------NKSVNESLNNLFIT-EEDYQALRT 301 (336)
T ss_dssp ----HHHHHHHHHTTCTTTTHHHHHHHHTTC--------CHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred ----HHHHHHHHhcCCcHHHHHHHHHHHHcC--------hHHHHHHHHHHHhC-cchhHHHHH
Confidence 334445556666666666665544322 13466666666555 666554333
|
| >d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: ECA1476-like domain: Uncharacterized protein ECA1476 species: Pectobacterium atrosepticum [TaxId: 29471]
Probab=89.46 E-value=0.54 Score=42.11 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCCCceEEEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMVSGS 803 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~~~ilv~v~G~ 803 (1169)
...+.+|+..|+ .+.+.+..+|.++..++..+|....|...+.+..+.+.......+.....+.-...++..++.....
T Consensus 11 ~~~~~~y~~A~~~~D~~~~~~l~t~Dav~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~A~~~~~~~ 90 (132)
T d3d9ra1 11 EAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSADWAFVRSATE 90 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEEccCCcceehHHHHHHHHHHHhhcCCcceeeeccceeeecCCceEEEEEEE
Confidence 567888999887 7899999999998766644444445555443332322222222222222221111123344433433
Q ss_pred E--EecCc--cccceeEEEEEEEeeC-CeEEEEcceEEec
Q 001060 804 V--KTKEF--CRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 838 (1169)
Q Consensus 804 ~--~~~~~--~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 838 (1169)
+ +.++. .......-+++|..+. |.|.|..++|..+
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~v~~r~~dG~Wki~~~~~s~~ 130 (132)
T d3d9ra1 91 GTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 130 (132)
T ss_dssp EEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEecCCCcceecceeEEEEEEECCCCcEEEEEEEecCC
Confidence 3 33322 1223345677777765 5699999998654
|
| >d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: YybH-like domain: Hypothetical protein YybH species: Bacillus subtilis [TaxId: 1423]
Probab=89.36 E-value=0.43 Score=42.79 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcC---CCcceeEeeeeccccCCCceEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL---NFTAIEIKTINSLGSWNGGVLVMV 800 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l---~~~~~~i~~~d~q~~~~~~ilv~v 800 (1169)
+.++.+|..-++ .+.+.|..+|.++..++..+|.... |.++|.+.+..+ ....+.+...+.+....+. +..|
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~l~~~Da~~~~~~g~~~~---G~e~i~~~~~~~~~~~~~~~~~~~~~~~v~~~gD-~A~~ 81 (128)
T d2gxfa1 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIAR---GKEEIKKAFITIANYFNHHIVPTQGKMILLEAGD-TVLV 81 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEE---HHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETT-EEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhccCCcEecCCCccee---ehHHHHHHHHHHHHhcccccceeecceeEeecCC-ceEE
Confidence 467788888876 7999999999998666543454444 455555555443 2223333333322222222 3334
Q ss_pred EEEEEec----CccccceeEEEEEEEeeC-CeEEEEcce
Q 001060 801 SGSVKTK----EFCRRRKFVQTFFLAPQE-KGYFVLNDI 834 (1169)
Q Consensus 801 ~G~~~~~----~~~~~~~F~q~F~L~~~~-~~y~v~nDi 834 (1169)
.|..... +.........|+++..+. +.|.|.-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~t~v~~r~~dG~Wki~~D~ 120 (128)
T d2gxfa1 82 LSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (128)
T ss_dssp EEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEcCCCCcccceEEEEEEEEECCCCcEEEEEEC
Confidence 5554432 222234567788888865 669887653
|
| >d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: SO0125-like domain: Uncharacterized protein SO0125 species: Shewanella oneidensis [TaxId: 70863]
Probab=88.51 E-value=1.2 Score=38.88 Aligned_cols=107 Identities=9% Similarity=-0.041 Sum_probs=62.0
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcC---CCccee--EeeeeccccCCCceEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL---NFTAIE--IKTINSLGSWNGGVLV 798 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l---~~~~~~--i~~~d~q~~~~~~ilv 798 (1169)
..-++.|-.-++ .+++.+..+|.++..++.+.+.. ...+.++|.+.+..+ ....++ +..++.....++..+|
T Consensus 7 ~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~~~~~--~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~a~~ 84 (121)
T d3b7ca1 7 VQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK--FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAAMV 84 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC--EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhccCcceEecCCc--ceecHHHHHHHHHHhhcccccccEEEEeeEEEEEcCCCEEEE
Confidence 345777887776 79999999999988777544322 234445555554332 122233 3333333322333333
Q ss_pred EEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceE
Q 001060 799 MVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835 (1169)
Q Consensus 799 ~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDif 835 (1169)
.....+...+ .......|++|...+++|.|..+-+
T Consensus 85 ~~~~~~~~~~--~~~~~r~T~v~~k~~g~WkIv~~H~ 119 (121)
T d3b7ca1 85 VGRWDLKRLK--DTPTGVFTLLVEKIDDRWVITMDHS 119 (121)
T ss_dssp EEEEEEECSS--CCCEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcccC--CCcceEEEEEEEEECCEEEEEEEee
Confidence 3333344333 3445667899999999999987644
|
| >d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: BaiE/LinA-like domain: Uncharacterized protein NpunR1993 species: Nostoc punctiforme [TaxId: 272131]
Probab=88.28 E-value=0.64 Score=43.61 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=67.1
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
.+++++|...++ .+.+.+..+|.++..++...|....|...+.+..+.+..-.... +.+...+.....++..++...
T Consensus 10 ~al~~~~~~A~~~~D~d~~~~l~a~D~~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~d~Avv~~~ 89 (162)
T d3cu3a1 10 RAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALMLVV 89 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhhccCeeeecccccccCCHHHHHHHHHHHHhhcccceeEEeeceEEEEecCCEEEEEEE
Confidence 467888988887 68899999999987665544544455555544333333222222 333344444333444555566
Q ss_pred EEEEecCc---cccceeEEEEEEEeeCCeEEEEc
Q 001060 802 GSVKTKEF---CRRRKFVQTFFLAPQEKGYFVLN 832 (1169)
Q Consensus 802 G~~~~~~~---~~~~~F~q~F~L~~~~~~y~v~n 832 (1169)
..+...+. ...+.+..|++|..++++|.|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~r~t~Vl~K~dG~WrIa~ 123 (162)
T d3cu3a1 90 IRVILPGQTETSASRDSLPLYVVTKGDEGWQIEG 123 (162)
T ss_dssp EEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEE
T ss_pred EEEeecCCCCCCcceeEEEEEEEEEECCEEEEEE
Confidence 66665432 12345788999999999999974
|
| >d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: BxeB1374-like domain: Hypothetical protein BxeB1374 species: Burkholderia xenovorans [TaxId: 36873]
Probab=88.12 E-value=0.87 Score=40.72 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=69.3
Q ss_pred chhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCC--cceeEeeeeccccCCCceEE
Q 001060 721 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF--TAIEIKTINSLGSWNGGVLV 798 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~--~~~~i~~~d~q~~~~~~ilv 798 (1169)
.+|-..|-+.|--+-..+.+.|..+|.++..++.+.+.+. ..+.++|...+....- ..+.+...+.....++. .
T Consensus 10 a~I~a~~~~~~~A~~~~D~~~l~~l~a~d~~~v~~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~~i~~~g~d~--A 85 (128)
T d2owpa1 10 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEV--QHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDF--A 85 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSCE--EESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTE--E
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhccCCcEEEeeccce--ecchhHHHHHHHHhhccCcccccceeEEEEeeCce--E
Confidence 5677777555555666999999999998777765554432 2455566666655432 12333333333222232 3
Q ss_pred EEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 799 MVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 799 ~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
++++....++....=+|+++|+....+++|.|..+-+..+.
T Consensus 86 ~~~~~~~~~~~~~~Gr~t~v~~r~~~~~gWrIv~~H~S~~~ 126 (128)
T d2owpa1 86 TVSTEFTSDATPLLGRQMQTWARLSPADGWKIVAAHVSLIA 126 (128)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEECSTTTCEEEEEEEEEEEC
T ss_pred EEEEEEEEccCCcceeEEEEEEEcCCCCCEEEEEEeecCCC
Confidence 34555555554333367877777666789999988776554
|
| >d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-specific ribonuclease PARN species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.13 E-value=1 Score=37.70 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=44.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
...||.-..|......||.++|+.||.|. |...+.. -|||...+.+.+..++..
T Consensus 15 RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~---VswIddT------Sa~V~L~~~e~~~~v~~~ 68 (100)
T d1whva_ 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSCC---CEEEETT------EEEEECSCHHHHHHHHHH
T ss_pred cceeEEEeCCcccchhHHHHHhcCCCceE---EEEecCc------eEEEEecCHHHHHHHHHH
Confidence 35689999999999999999999999986 3333432 799999999998888764
|
| >d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: BxeB1374-like domain: Uncharacterized protein ECA3500 species: Pectobacterium atrosepticum [TaxId: 29471]
Probab=85.61 E-value=2.4 Score=37.40 Aligned_cols=112 Identities=7% Similarity=0.063 Sum_probs=66.7
Q ss_pred chhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCc--ceeEeeeeccccCCCceEE
Q 001060 721 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLV 798 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~--~~~i~~~d~q~~~~~~ilv 798 (1169)
.+|...|-+.+--+..++.+.|..+|.++..++...+.+. ..+.++|.+.+....-. ...+...+.....++ ..
T Consensus 13 aeI~a~~~~~~~A~~~~D~~~l~~l~a~D~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~d--~a 88 (127)
T d2rcda1 13 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGEN--LYGIEEIRAFRLARPSAGLDRALRNTVITTYGHD--MA 88 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTEE--EESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTS--EE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcCCCcEEEeCCCcc--cccHHHHHHHHHhccccccceEeeeeEEEEeecc--hh
Confidence 4677776544444566999999999999887876665432 23444555555443211 222332222222222 34
Q ss_pred EEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEec
Q 001060 799 MVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838 (1169)
Q Consensus 799 ~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~ 838 (1169)
++++.....+. ...-.+|.++...+++|.|..+-+-++
T Consensus 89 ~~~~~~~~~~~--~~~Gr~T~v~~r~~ggWkIv~~H~S~~ 126 (127)
T d2rcda1 89 VASTEFTRTGS--TKIGRQMQTWVKMPEGWRIVAAHVSLM 126 (127)
T ss_dssp EEEEEEECSSC--CSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred hheeeecccCC--CCceEEEEEEEEcCCeEEEEEEEEecc
Confidence 45666665554 334456777788899999998776554
|
| >d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: Orange carotenoid protein, C-terminal domain domain: Orange carotenoid protein, C-terminal domain species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]
Probab=85.25 E-value=1.7 Score=39.64 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=75.1
Q ss_pred cchhHhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcC--CCcceeEeeeeccccCCCce
Q 001060 720 PAQVGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL--NFTAIEIKTINSLGSWNGGV 796 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l--~~~~~~i~~~d~q~~~~~~i 796 (1169)
-..|...=|+.||..|+ .+.+.+..+|.++..+.- .+. ....|.++|..++... .++.+ -.........++++
T Consensus 17 ~~~i~~~~V~~Y~~a~na~D~d~~~~lFa~Dav~~~-P~~--~p~~G~eaI~~f~~~~~~~~~~~-p~~g~~~~~~~g~~ 92 (142)
T d1m98a2 17 IEGVTNSTVLQYMDNLNANDFDNLISLFAEDGALQP-PFQ--KPIVGKENTLRFFREECQNLKLI-PERGVSEPTEDGYT 92 (142)
T ss_dssp BBTBCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC-TTS--CCEESHHHHHHHHHHHCTTCEEE-EEEEEEEECGGGCE
T ss_pred cccccHHHHHHHHHHHhcCCHHHHHHHcCCCeEEeC-CCC--ccccCHHHHHHHHHHhcccceec-ccceeeEeecCCcE
Confidence 34467777999999997 799999999999865532 221 2345666777777654 22222 11222333456789
Q ss_pred EEEEEEEEEecC--ccccceeEEEEEEEeeCCeEEEEcceE
Q 001060 797 LVMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIF 835 (1169)
Q Consensus 797 lv~v~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nDif 835 (1169)
.|.|+|.++..- ..-...|.=.|.|-++++=+||.=|.+
T Consensus 93 ~v~vtgkV~~~~~G~~~~vn~a~~F~ln~~GkI~~v~i~ll 133 (142)
T d1m98a2 93 QIKVTGKVQTPWFGGNVGMNIAWRFLLNPENKVFFVAIDLL 133 (142)
T ss_dssp EEEEEEEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred EEEEEEEEecCCCCcceeeeeEEEEEECCCCcEEEEEeehh
Confidence 999999997643 212456777899988888888875555
|