Citrus Sinensis ID: 001119

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
ccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHcHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcc
cccccccccccccccHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccHHHcccccEEEEEcccccccccHHEcHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccHHcccccEEEccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEEEEEEEEcccccccccccccccccEEEEcccEEEccccccccccccccccccccHHHHHcHHHHHHccccccEEEccccccccccHHHHHHHHccccccHcHHHHHHHHHHHccc
maspssgrlaitpssrvlqsplsdESIWKRLKeagldevsiKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAEsaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFtgnyikydssiECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
maspssgrlaitpssrvlqsplsdesIWKRLkeagldevsikrrDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRaesaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdrEWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECelvqsdnskknkeliayrtrskqkk
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVqrqkleeqrqllHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
**************************IWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELA**********************************************ECIASL*****************************************************************************************************************************************************************LDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIE********************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**********************************************************************************************************************LKIAVDYM*****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFIN*****************IV*************TDDVVLPYISEIDGMV*****************************************************
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********AITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
*********************LSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTS*************************************ARFSWIKRFADLVFKH*********************SLT**SRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAA******************************************V*E***********************************NEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTEC**********************K*NK*****R*R*****
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MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILExxxxxxxxxxxxxxxxxxxxxQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1150 2.2.26 [Sep-21-2011]
Q9FLH01042 Putative nuclear matrix c yes no 0.835 0.922 0.515 0.0
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 Back     alignment and function desciption
 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1046 (51%), Positives = 735/1046 (70%), Gaps = 85/1046 (8%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQ 361
            REEV   S   L   ++       F G+ I          AV ERE+SL KKEQ+LLV++
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKI----------AVSERESSLLKKEQELLVAE 364

Query: 362  ETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQ 421
            E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ Q
Sbjct: 365  EKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQ 424

Query: 422  REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEE 481
            RE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE 
Sbjct: 425  REDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKER 484

Query: 482  VNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLEL 541
            +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE+
Sbjct: 485  LRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEM 544

Query: 542  MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAM 601
            + E D+L++EKAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+
Sbjct: 545  LAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDAL 604

Query: 602  RDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRRE 661
            R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +RE
Sbjct: 605  RNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKRE 664

Query: 662  ELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRD 721
            ELE+S R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+
Sbjct: 665  ELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERRE 724

Query: 722  REWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ 781
            REWAEL +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ
Sbjct: 725  REWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQ 784

Query: 782  RSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTAS 834
             S LE S +K+SA   L Q+       +  D + D       V+N+ D +N+ S+++   
Sbjct: 785  LSNLERSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNG 834

Query: 835  ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFG 894
             +P S   FSWIKR  +L+FK S E S                           + + + 
Sbjct: 835  LTPSSATPFSWIKRCTNLIFKTSPEKST--------------------------LMHHYE 868

Query: 895  EPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSEL 954
            E      VPSE       + LES   +  A     S++ + + A RKRR +    + SE 
Sbjct: 869  EEGG---VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE- 918

Query: 955  LMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNN 1014
               NNK+RK   D  +  S+EA     ++   N+PED+H L S +++  P G+       
Sbjct: 919  -PSNNKKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------- 967

Query: 1015 HTQGGNEEASILIVDKIIKISEVTCE 1040
                       +++ + +KI+ VTCE
Sbjct: 968  -----------VVISETVKITRVTCE 982


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.329 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,894,308
Number of Sequences: 539616
Number of extensions: 16354410
Number of successful extensions: 139759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 4791
Number of HSP's that attempted gapping in prelim test: 83545
Number of HSP's gapped (non-prelim): 28340
length of query: 1150
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1021
effective length of database: 121,958,995
effective search space: 124520133895
effective search space used: 124520133895
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1150
3594970421117 PREDICTED: putative nuclear matrix const 0.941 0.969 0.554 0.0
2555795071052 Filamin-A-interacting protein, putative 0.902 0.986 0.554 0.0
4494513331025 PREDICTED: putative nuclear matrix const 0.839 0.941 0.536 0.0
3565119841048 PREDICTED: putative nuclear matrix const 0.889 0.976 0.520 0.0
3565634801050 PREDICTED: putative nuclear matrix const 0.891 0.976 0.509 0.0
2384816501042 protein little nuclei4 [Arabidopsis thal 0.835 0.922 0.515 0.0
7486519 1421 hypothetical protein F6H11.110 - Arabido 0.832 0.673 0.514 0.0
2402564861010 branched-chain-amino-acid aminotransfera 0.819 0.932 0.507 0.0
3341886551018 branched-chain-amino-acid aminotransfera 0.812 0.917 0.501 0.0
284807022925 nuclear matrix constituent protein 2 [Ap 0.704 0.875 0.524 0.0
>gi|359497042|ref|XP_003635406.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi|296085718|emb|CBI29518.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1131 bits (2926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1182 (55%), Positives = 828/1182 (70%), Gaps = 99/1182 (8%)

Query: 1    MASPSSGRLAI--TPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            MASP   R +I  TP SRVLQSPLSD++IWKRL++AG DE SIKRRDKAALIAYIAKLE 
Sbjct: 1    MASPQPARFSIAATPGSRVLQSPLSDDAIWKRLRDAGFDEESIKRRDKAALIAYIAKLEA 60

Query: 59   EIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKK 118
            EIF+HQHHMGLLILE+KE A+KYEQIK  AE+AE++ K D+++H SA+AEARKRE+SLKK
Sbjct: 61   EIFDHQHHMGLLILERKEWATKYEQIKTEAESAEIVYKRDQSAHSSALAEARKREDSLKK 120

Query: 119  TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 178
             L +EKECIA+LEKA+HE+R E AETKVAA+ K AEA  MVE+AQK+F EAEAKLHAAE+
Sbjct: 121  ALEIEKECIANLEKALHEMRQECAETKVAAEIKLAEAHSMVEDAQKRFVEAEAKLHAAEA 180

Query: 179  LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 238
             QAEA  + R+AERKLQEV AREDDL RR+ SFK+DC+EKE+EII ERQSLS+R+K +QQ
Sbjct: 181  FQAEAICFRRTAERKLQEVEAREDDLRRRLISFKSDCDEKEKEIILERQSLSERQKNVQQ 240

Query: 239  EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298
              ERL+D Q LLN+RE++I S+ QEL+R EKELEAS++N+E++ +ALNEEKSNL+L L S
Sbjct: 241  GQERLIDGQALLNQREEYIFSRSQELNRLEKELEASKSNIEKELRALNEEKSNLELKLAS 300

Query: 299  LLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLL 358
            L  REE                                      V++REA L KKE ++L
Sbjct: 301  LTTREE-------------------------------------DVVKREALLNKKEHEIL 323

Query: 359  VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 418
            + QE +ASKES+E+QK++A HE AL+ +++EFEAEL  K KL EDEIE KRRA ELR++D
Sbjct: 324  ILQEKIASKESDEVQKLMALHEIALKTRKAEFEAELETKRKLVEDEIEAKRRASELREVD 383

Query: 419  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 478
            L  RE+  LEREH+LEVQSRAL +KEKD+ E+ + L+EKE  L A EK+ +L+K  L+KE
Sbjct: 384  LSNREDFALEREHELEVQSRALAEKEKDVTEKLNSLDEKEKYLNAAEKDVELEKIHLEKE 443

Query: 479  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQK 538
            KEE+N +K +++KSLSSL++KKKQV+ AK+K+EAMKSE  EL VLE+KLKEE+DV+RAQK
Sbjct: 444  KEEINKMKLNIEKSLSSLEDKKKQVDHAKEKVEAMKSETSELLVLEMKLKEEIDVIRAQK 503

Query: 539  LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQER 598
            LELM E D+L+ +KA FEAEWE IDEKREELR EAER+A ER+ +SK LKDERDSL+ E+
Sbjct: 504  LELMAEADELRAQKANFEAEWESIDEKREELRNEAERIAEERLAISKFLKDERDSLKLEK 563

Query: 599  DAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEK 658
            DAMRDQ+K++V+SL+RERE+FM+KMVHE SEWF+KIQQERADFLL IEMQK++LENCI+ 
Sbjct: 564  DAMRDQYKQEVESLSREREDFMSKMVHERSEWFSKIQQERADFLLDIEMQKKELENCIDN 623

Query: 659  RREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQ 718
            RREELES F+EREK FE+EKM+E Q ISS+KE+  KELE V  E+KRLD ERMEIN+D +
Sbjct: 624  RREELESYFKEREKTFEQEKMKELQHISSMKERVAKELEHVASEMKRLDAERMEINLDHE 683

Query: 719  RRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVS 778
            RRDREWAEL+NSIEEL +QRQKL++QR+LLHADR+EI  + E LKKLEDLKIA D +A++
Sbjct: 684  RRDREWAELSNSIEELKMQRQKLKKQRELLHADRKEIHTQIEHLKKLEDLKIASDNIALA 743

Query: 779  EMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPP 838
            EMQ+S  E SQ+K+  KR+   Q ++ +AD  S QK +V  NG  FN P++    S+SP 
Sbjct: 744  EMQQSNQEPSQRKVYVKRYYKAQNTIPNADFESHQKINVVKNGSGFNLPAL--PDSSSPS 801

Query: 839  SLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSR-------------- 884
            +   FSW KR A+L+FK S E       EKS  S+ E+A+LT+                 
Sbjct: 802  TATPFSWFKRCAELIFKLSPEKPSIKHGEKSSISNSENANLTLAGNLDLSDGFDREVHDR 861

Query: 885  --------KRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGI 936
                     RQP RY+ GEPKVILEVPS  E VK    LESE  ++ ++    S SE  +
Sbjct: 862  NEKTHSISDRQPTRYALGEPKVILEVPSSGEDVKGLHTLESEIKKDTSENSSHSFSEKEL 921

Query: 937  HAARKRRV----DVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQ 992
             A RKRRV      D VD +    Q NK+R+QQE         A +   V+ Q       
Sbjct: 922  LAGRKRRVVNSSSNDWVDTTLEQRQKNKKRRQQES--------AADPCGVSIQ------- 966

Query: 993  HTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEK 1052
                    S+  EG     S N TQGG EE ++LI D+IIKISEVTCE      F NQ K
Sbjct: 967  --------SDAREGQDVSISLNQTQGGAEETNLLITDEIIKISEVTCENV---VFDNQAK 1015

Query: 1053 IDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECG 1112
             +  QNSV E  QDI + GGTN  +     + V+       + + +E    +V  + E  
Sbjct: 1016 PNALQNSVVELGQDI-QHGGTNGLADSNAENCVLSSDFKAQEKIGKEVLFVDVGQVIEHS 1074

Query: 1113 QAQNEMGEHKLECEL-----VQSDNSKKNKELIAYRTRSKQK 1149
            Q Q+E    K + EL      +SD+ KK  E +  R RS+QK
Sbjct: 1075 QPQDESISEKSQQELQEQGVPKSDDDKKLSEKVGRRMRSRQK 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579507|ref|XP_002530596.1| Filamin-A-interacting protein, putative [Ricinus communis] gi|223529844|gb|EEF31776.1| Filamin-A-interacting protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451333|ref|XP_004143416.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511984|ref|XP_003524701.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356563480|ref|XP_003549990.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|238481650|ref|NP_001154799.1| protein little nuclei4 [Arabidopsis thaliana] gi|26397174|sp|Q9FLH0.1|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi|10177335|dbj|BAB10684.1| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi|332010721|gb|AED98104.1| protein little nuclei4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240256486|ref|NP_201378.5| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|334188653|ref|NP_001190626.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010720|gb|AED98103.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010722|gb|AED98105.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188655|ref|NP_001190627.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010724|gb|AED98107.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|284807022|dbj|BAI67716.1| nuclear matrix constituent protein 2 [Apium graveolens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1150
TAIR|locus:21699501042 LINC4 "LITTLE NUCLEI4" [Arabid 0.761 0.840 0.492 4.9e-211
TAIR|locus:20195291132 LINC1 "AT1G67230" [Arabidopsis 0.494 0.502 0.262 4.7e-44
TAIR|locus:20318751128 LINC2 "LITTLE NUCLEI2" [Arabid 0.36 0.367 0.299 6.5e-43
TAIR|locus:20124231085 LINC3 "LITTLE NUCLEI3" [Arabid 0.547 0.580 0.237 3.7e-37
ZFIN|ZDB-GENE-050208-3171422 tnks1bp1 "tankyrase 1 binding 0.399 0.322 0.216 1.4e-13
UNIPROTKB|E2R6J1 3261 GOLGB1 "Uncharacterized protei 0.430 0.151 0.200 1.2e-10
DICTYBASE|DDB_G02905031492 DDB_G0290503 [Dictyostelium di 0.447 0.345 0.214 5.2e-12
DICTYBASE|DDB_G02724721508 DDB_G0272472 "putative actin b 0.495 0.377 0.231 5.3e-12
MGI|MGI:19252661110 Ccdc150 "coiled-coil domain co 0.329 0.341 0.219 1.3e-11
UNIPROTKB|H0Y6I0 2099 GOLGA4 "Golgin subfamily A mem 0.455 0.249 0.198 1.5e-11
TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2040 (723.2 bits), Expect = 4.9e-211, P = 4.9e-211
 Identities = 441/896 (49%), Positives = 596/896 (66%)

Query:     2 ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
             ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct:    15 STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query:    62 EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
             ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct:    75 DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query:   122 VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
             + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct:   135 IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query:   182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHE 241
             EANRYHR AERKL+EV +REDDL+RR+ASFK++C           Q+L++R+K LQQEHE
Sbjct:   195 EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query:   242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
             RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct:   255 RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query:   302 REEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQ 361
             REEV   S   L L LVL   H   +  ++     I    AV ERE+SL KKEQ+LLV++
Sbjct:   315 REEVCFYSHNSL-LFLVL---HYRSSKKFL--GDKI----AVSERESSLLKKEQELLVAE 364

Query:   362 ETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQ 421
             E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ Q
Sbjct:   365 EKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQ 424

Query:   422 REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADXXXXXXXXXXXX 481
             RE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ +            
Sbjct:   425 REDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKER 484

Query:   482 VNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLEL 541
             +  +                 V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE+
Sbjct:   485 LRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEM 544

Query:   542 MVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXXXXXKDERDSLRQERDAM 601
             + E D+L++EKAKFEAEWE ID                        KDERD++++ERDA+
Sbjct:   545 LAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDAL 604

Query:   602 RDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIXXXXX 661
             R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CI     
Sbjct:   605 RNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKRE 664

Query:   662 XXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIKRLDLERMEINMDRQRRD 721
                                  ++I S           V +E+KRLD ER+EI +DR+RR+
Sbjct:   665 ELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERRE 724

Query:   722 REWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ 781
             REWAEL +S+EEL V             A+R+EI+ E E LKKLE+LK+A+D M++++MQ
Sbjct:   725 REWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQ 784

Query:   782 RSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-VTNNGDRFNTPSVQKTASASPPSL 840
              S LE S +K+SA   L Q+      +L        V+N+ D +N+ S+++    +P S 
Sbjct:   785 LSNLERSWEKVSA---LKQKVVSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSA 840

Query:   841 ARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTINSRKRQPVRYSFG 894
               FSWIKR  +L+FK S E S  + + EE+      +   L + S +R+   Y+ G
Sbjct:   841 TPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGGVPSEK---LKLESSRREEKAYTEG 893
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0005652 "nuclear lamina" evidence=IDA
GO:0006997 "nucleus organization" evidence=IMP
GO:0034399 "nuclear periphery" evidence=IDA
TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6J1 GOLGB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272472 DDB_G0272472 "putative actin binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1925266 Ccdc150 "coiled-coil domain containing 150" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y6I0 GOLGA4 "Golgin subfamily A member 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FLH0NMCP_ARATHNo assigned EC number0.51520.83560.9222yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1150
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-12
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-11
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-10
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-09
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-08
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-07
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-07
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-06
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 7e-06
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 7e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 1e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 1e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 4e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-04
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 1e-04
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 1e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 4e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 7e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 0.001
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 0.001
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.001
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 0.003
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.004
TIGR026801353 TIGR02680, TIGR02680, TIGR02680 family protein 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 72.1 bits (177), Expect = 1e-12
 Identities = 117/730 (16%), Positives = 271/730 (37%), Gaps = 62/730 (8%)

Query: 37   DEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQK 96
            + +     +   L   + +L+ +I   +  +       +EL     +++ + E  E    
Sbjct: 309  ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 97   HDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAE---SAETKVAADSKFA 153
                         R+    L+  L   +  +  L++ +  +       +E       +  
Sbjct: 369  ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 154  EARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA 213
            E    +E  Q +  E   +L   E    E     +  ER+L E+      L + ++S +A
Sbjct: 429  ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488

Query: 214  DCEEKEREIIRERQSLSDRKKILQQEHERLLDA---------------QTLLNEREDHIL 258
              +  E E  R  Q +    + L+     +                  +  L  R   ++
Sbjct: 489  RLDRLEAEQ-RASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAVV 547

Query: 259  SKLQELSRKEKELEASRANVEEKFKALNEEKSNLDL----------TLVSLLKREEVYTI 308
             + +E+++K  E           F  L+  K    L              L+  +  Y  
Sbjct: 548  VENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEP 607

Query: 309  SFPFLFLNLVLICFHVLFTGNYIKYDSSIEC-----TQAVIEREASLQKKEQKLLVSQET 363
            +  F+  +   +    L     +     I+         ++E   S+    +        
Sbjct: 608  AVRFVLGDT--LVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN--KRSSL 663

Query: 364  LASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 423
               +E  E+++ +A  E+ L   + E +  L  + +  ED +E+ RR  E  +  L + +
Sbjct: 664  AQKRELKELEEELAELEAQLEKLEEELK-SLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 424  ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 483
                    +L      L   +  L E    LEE E +L   ++  +  +  L+  +E + 
Sbjct: 723  R-------ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 484  IIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 543
             +K ++++        ++++   +++LE  +     L      L++  + +  +  EL  
Sbjct: 776  KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 544  ETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRD 603
            E ++L+ +  + E E E ++++ EEL++E E +  E+  +   LK+  +   +  + +R 
Sbjct: 836  EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR- 894

Query: 604  QHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREEL 663
            + + ++  L  E E+   ++         + + ER      +E++  +LE  +E+  E+ 
Sbjct: 895  ELESELAELKEEIEKLRERLEE------LEAKLER------LEVELPELEEELEEEYEDT 942

Query: 664  ESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDRE 723
              +  ERE    EE++     ++    +A +E E+V    + L  +R ++   +++    
Sbjct: 943  LETELEREIERLEEEIEALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Query: 724  WAELNNSIEE 733
              EL+    E
Sbjct: 1000 IEELDKEKRE 1009

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1150
PRK02224880 chromosome segregation protein; Provisional 99.42
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.35
PRK02224880 chromosome segregation protein; Provisional 99.18
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.16
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.99
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.97
PRK03918880 chromosome segregation protein; Provisional 98.8
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.63
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.62
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.6
PRK03918880 chromosome segregation protein; Provisional 98.58
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 98.58
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.55
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.54
PRK01156895 chromosome segregation protein; Provisional 98.52
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.43
PRK01156895 chromosome segregation protein; Provisional 98.38
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.91
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.82
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 97.75
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.73
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 97.62
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 97.58
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.34
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 97.32
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.02
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.95
PRK11637428 AmiB activator; Provisional 96.57
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 96.52
PRK11637428 AmiB activator; Provisional 96.47
PRK12704520 phosphodiesterase; Provisional 96.43
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.38
PRK00106535 hypothetical protein; Provisional 96.28
PF00038312 Filament: Intermediate filament protein; InterPro: 96.18
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.05
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.92
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.82
PHA02562562 46 endonuclease subunit; Provisional 95.79
PHA02562562 46 endonuclease subunit; Provisional 95.79
PRK12704520 phosphodiesterase; Provisional 95.61
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.57
KOG0018 1141 consensus Structural maintenance of chromosome pro 95.42
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 95.32
PRK04863 1486 mukB cell division protein MukB; Provisional 95.27
KOG09331174 consensus Structural maintenance of chromosome pro 95.18
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 95.06
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 94.98
KOG0964 1200 consensus Structural maintenance of chromosome pro 94.96
PF10174775 Cast: RIM-binding protein of the cytomatrix active 94.86
PRK00106535 hypothetical protein; Provisional 94.38
KOG0964 1200 consensus Structural maintenance of chromosome pro 94.17
KOG0977546 consensus Nuclear envelope protein lamin, intermed 93.92
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 93.82
PF00038312 Filament: Intermediate filament protein; InterPro: 93.08
PF13851201 GAS: Growth-arrest specific micro-tubule binding 92.25
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.23
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 92.16
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.94
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 91.93
KOG06121317 consensus Rho-associated, coiled-coil containing p 91.56
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 90.99
PRK12705508 hypothetical protein; Provisional 90.24
PF05701522 WEMBL: Weak chloroplast movement under blue light; 89.57
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 89.5
KOG0996 1293 consensus Structural maintenance of chromosome pro 89.45
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 87.77
PF05701522 WEMBL: Weak chloroplast movement under blue light; 87.56
PRK04863 1486 mukB cell division protein MukB; Provisional 86.18
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 86.03
PRK09039343 hypothetical protein; Validated 85.56
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 85.14
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 84.42
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 83.57
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 82.66
PF13863126 DUF4200: Domain of unknown function (DUF4200) 80.72
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 80.63
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information 
Probab=99.42  E-value=1.9e-06  Score=103.55  Aligned_cols=52  Identities=29%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHH-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001119          524 EIKLKEELDVVRAQKLELMV-----ETDKLQLEKAKFEAEWEMIDEKREELRKEAER  575 (1150)
Q Consensus       524 Q~eLKeEId~~R~Qke~Llk-----Eae~Lk~EKekFE~EWE~LDEKR~el~KEa~~  575 (1150)
                      ..+++++|...|.+...|..     ..+.|.....+.+..-+.+..+..+++.+...
T Consensus       622 ~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~  678 (880)
T PRK02224        622 NDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD  678 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34777888888887777743     23344444444444444444444333333333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF13863 DUF4200: Domain of unknown function (DUF4200) Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1150
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 8e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 86.1 bits (212), Expect = 4e-17
 Identities = 112/656 (17%), Positives = 216/656 (32%), Gaps = 151/656 (23%)

Query: 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 241
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 242 -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 291
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 292 LDLTLVSLLK----REEVYTISFPFLFLNLVL--------ICFH--------VLFTGNYI 331
           L        K    R +      P+L L   L        +            +   +  
Sbjct: 119 LYNDNQVFAKYNVSRLQ------PYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVC 171

Query: 332 KYDSSIEC---------TQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA 382
                ++C                  ++ +  QKLL   +   +  S+    I     S 
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 383 ---LR--VKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLL-EREHDLEVQ 436
              LR  +K   +E  L +   L    +   + A      +L  +   LL  R   +   
Sbjct: 231 QAELRRLLKSKPYENCLLV---L--LNV---QNAKAWNAFNLSCK--ILLTTRFKQVTDF 280

Query: 437 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQK 491
             A       L   S  L   E K +   K  D +   L +E    N     II   ++ 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 492 SLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMV 543
            L++ D  K  VNC  DKL   ++S    L   E + + + L        +    L L+ 
Sbjct: 340 GLATWDNWK-HVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI- 395

Query: 544 ETDKLQLEKAKFEAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS------- 593
                          W ++I         +   V  +  +   SL  K  ++S       
Sbjct: 396 ---------------WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSI 431

Query: 594 ---LRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQ 648
              L+ + +     H+  VD  N  +    + ++  + +  +++ I       L  IE  
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHP 487

Query: 649 KRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 708
           +R            +   FR     F E+K+R      S    A   +      +++L  
Sbjct: 488 ERMTL------FRMVFLDFR-----FLEQKIRH----DSTAWNASGSILNT---LQQLKF 529

Query: 709 ERMEINMDRQRRDREWAELNN---SIEELMVQRQKLEEQRQLLHADREEIQAESER 761
            +  I  +  + +R    + +    IEE ++  +  +  R  L A+ E I  E+ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1150
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.99
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.8
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.02
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.68
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.82
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.73
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 92.11
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 91.15
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.06
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.8
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 80.66
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=97.99  E-value=1.2e-05  Score=98.77  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=12.3

Q ss_pred             CCCCcHHHHHHHHH----ccCChH
Q 001119           20 SPLSDESIWKRLKE----AGLDEV   39 (1150)
Q Consensus        20 ~~~~d~~iWkr~~e----aG~De~   39 (1150)
                      .+..|...|..++.    .||+.+
T Consensus       323 ~~~~d~~~f~~~~~a~~~lg~~~~  346 (1184)
T 1i84_S          323 PAQQDDEMFQETLEAMTIMGFTEE  346 (1184)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTCCHH
T ss_pred             CCCChHHHHHHHHHHHHhceeCHH
Confidence            34567777776655    477543
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00