Citrus Sinensis ID: 001162

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130----
MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA
cEEEEEEEcccccccccccHHHHHHHHccccccccccEEEEEEEEccccEEEEEEccccccccccEEcHHHHHHcccccccEEEEEEEccccccEEEEEEcccccHHHHHHHcHHHHHHHHHHccEEEccccEEEEEEccccEEEEEEEEEcccccEEEEccccEEEEccccccccccccccccHHcccccHHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEccHHHHHHHHcccccEEEEEccccccccccccccccccccccHHccccccccccccccccHHHHHccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHcccccccccHHHHHHccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccEEEEccccHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccc
cEEEEEEEccccHHHHHccHHHHHHHHccccccccccEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHccEEEccccccEEEcccEEEEEEEEEccccccEEEEccccEEEEccccccccccccHHHHHHHcccHHHHHHHHHHcccccccEEEEEEEEEEEEEEEEEEEEEEcHHHHHHccccccEEEEEEcccccccccccccccccccccccHHHccccccccccHHEEEEEEEEcHHHcccccEccHHHHHHHcccccEEEEEEEEcccccccccEEEEcccEEEEcccHHHcccccEccccccEEEccccccccccccccEEcccccHHHEEccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHcccEEcEEEEcccEEEEEEEEcccccccccccccccccEEccccccccccEEEEEEEHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHEEccccccccccccccHcccccEEccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcHcHHHHHHHHHHHHHccccEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHcccccccEEEEEccccHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHcccccccccEEEEccccccccHHccccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHcHcHHHHHHHHHHHHHcccEEEEEEcHHHHccccccccccHHHHHHHHHHHHHccHHccccEEEEEEccccccccHHHcccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccHHHHHHHHHHccccccHHHEEEcHHHHHHHHcccHcHHHHHHHHHcccEccc
MELEVRVVGGVENCFVSLPLKLIETLEstrsahllPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVtieplteddWEVLELNSEHAEAAILNQVRIVHEAMRfplwlhgrtiITFHVvstfpkkpvvqlvpgtevavapkrrknnvkkhEDSYMQAFNESTSIAKALLRVqdsdeglshkcnVKGVELGVALTSVafinpetaenvsLCSLELVAIlprlsskennpennapriksnltskeisggastdkkECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVnlkkeipmvslspchfkMLEKDKAFGigleldnknhKTKKMLEktssgiymddgdlsaEDDIIAAlssepsskedEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEvkgyksgtygkvpascngalenkTKARELRTEIFCVLTfseeslhggknnaYELTLEARGQQNNNTEAVRQLFGklnsgdsvsfYTVKergstqgfdsnvsslswmgtTASDVINRIKVLlspdsglwfstyhlplpghilihgppgsgktSLAKAVAKSLEHHKDLVAHIVFVCCsrlslekgpIIRQALSNFISEaldhapsivifdnldsiissssdpegsqpstsVIALTKFLVDIMDEYGekrksscgigpIAFVASAQslekipqsltssgrfdfhvqlpapaaSERKAILEHEIQRRSLECSDEILLDVaskcdgydaydlEILVDRTVHAAVGrylhsdssfekhikptlvrddFSQAMHEFLPVAMRDItktsaeggrsgwddvggLTDIQNAIKEMIelpskfpnifaqaplrlrsnvllygppgcgkthIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATaaapcllffdefdsiapkrghdntgvTDRVVNQFLTELDGVEVLTGVFVFAatsrpdlldaallrpgrldrllfcdfpsprerLDILKVISrklpladdvdLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNnidsnepgkmpvITDALLKSIAskarpsvseaeKLRLYSIYGqfldskksvAAQSrdakgkratla
melevrvvggvencfvsLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTfpkkpvvqlvpgtevavapkrrknnvkkhedSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILPrlsskennpennapriksnltskEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIgleldnknhkTKKMLEKTSSGIYMDDGDLSAEDDIIAALssepsskedEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGyksgtygkvpascNGALENKTKARELRTEIFCVLtfseeslhggkNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKergstqgfdsnvssLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSssdpegsqpstSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRylhsdssfekhikptLVRDDFSQAMHEFLPVAMRDITKTSaeggrsgwddvGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLfcdfpspreRLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILnnidsnepgkMPVITDALLKSIASkarpsvseaekLRLYSIYGqfldskksvaaqsrdakgkratla
MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLdsiissssdpegsqpstsVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGadlqallsdaqlsaVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA
****VRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAV**************************AKALLRVQ***EGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILP***********************************CRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLEL***********************************************VYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELT***************QLFGKLNSGDSVSFYTVK*******FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGP*******LAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIF*********************VIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ**************FDFHVQ**********AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNI*********VITDALL***************KLRLYSIYGQFL*********************
**LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVA*******************************************************SVAF*********SLCSLELVA***************************************RQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVN*************************************************MDDGDLSAEDDIIAALSSEPSS*E************GLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLL***************************KARELRTEIFCVLTFSEESLHGGKNNAYELTL**************QLFGKLNS*************************SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR********I*QALSNFISEALDHAPSIVIFDNLDSI******************LTKFLVDIMDEYGE****SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV****************TLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS****************VNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILN**********PVITDALLKSIAS*******************************************
MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILPRLSSKENNPENNAPRIKSNLTSKE**********ECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSS***********YQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPP************KSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS***********TSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIA********EAEKLRLYSIYGQFLDSK******************
MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVKKHE*SY**AFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILPRL***************************STDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSE*S******AVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFY**K*RG*TQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS******SQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR**DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKG******
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MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1134 2.2.26 [Sep-21-2011]
Q9FNP11130 Peroxisome biogenesis pro yes no 0.982 0.985 0.624 0.0
O43933 1283 Peroxisome biogenesis fac yes no 0.406 0.359 0.455 1e-107
Q5BL07 1284 Peroxisome biogenesis fac yes no 0.402 0.355 0.442 1e-101
Q54GX51227 Peroxisome biogenesis fac yes no 0.417 0.386 0.407 1e-100
P464631157 Peroxisome biosynthesis p yes no 0.410 0.402 0.388 7e-99
P240041043 Peroxisomal ATPase PEX1 O yes no 0.440 0.479 0.366 2e-88
O05209745 VCP-like ATPase OS=Thermo yes no 0.450 0.685 0.365 5e-85
O74941937 Peroxisomal ATPase pex1 O yes no 0.407 0.493 0.358 1e-84
O28972733 Cell division cycle prote yes no 0.429 0.664 0.359 1e-84
Q58556 903 Cell division cycle prote yes no 0.407 0.511 0.376 3e-83
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2 Back     alignment and function desciption
 Score = 1333 bits (3451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/1137 (62%), Positives = 863/1137 (75%), Gaps = 23/1137 (2%)

Query: 1    MELE--VRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGA 58
            ME E  V  V GV +CFVSLP +L+  L+ST S+ L   +L +ELRS  ++RW VAWSG+
Sbjct: 14   METEAVVNTVAGV-DCFVSLPRQLLHALQSTSSSPLP-PLLPVELRS-GDRRWSVAWSGS 70

Query: 59   TSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAE 118
            +SSSS IE+AR FAE ISL D T+V+VRV+ NV KATLVT+EP TEDDWEVLELN+E AE
Sbjct: 71   SSSSSAIEIARVFAESISLPDGTVVKVRVLPNVPKATLVTVEPETEDDWEVLELNAELAE 130

Query: 119  AAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVK 178
            AAIL+QVRI+HE M+FPLWLH RT+I F VVSTFP K VVQLVPGTEVAVAPKRR  N+K
Sbjct: 131  AAILSQVRILHETMKFPLWLHDRTVIRFSVVSTFPSKGVVQLVPGTEVAVAPKRRDRNLK 190

Query: 179  KHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238
              +    +  N      KALLRVQ++D    H+ +VKG EL VALTS+A+I+PETA+  S
Sbjct: 191  AKKSQEKECNN-----VKALLRVQETDRSAFHEADVKGFELRVALTSIAYIHPETAKKHS 245

Query: 239  LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSV 298
            L SL+L+++ PR+  K +  ++ A  +K++  SK    G S+ KKE RQA++ L+FSD  
Sbjct: 246  LESLQLISVSPRIPLKGSAKKDEALNMKNSEASKVAENGTSSAKKEPRQAILRLVFSDLA 305

Query: 299  AKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLE 358
            AKGH+ +  +LRLYL AGLHSWVYL+ C VN  KEIP +SLSPC FK+ E +K    G +
Sbjct: 306  AKGHLMMVESLRLYLGAGLHSWVYLRGCNVNEDKEIPALSLSPCVFKISENEKVLDKGTD 365

Query: 359  -LDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLE 417
             L N N   K     +    Y+D  D S  D ++ ALSSE    E        +NKKGLE
Sbjct: 366  RLGNNNSVRKSSHPPSGLSTYVDVVDWSVHDKVVTALSSEGLHDEGNHD----KNKKGLE 421

Query: 418  CLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKT 477
             L   W LAQL A+AS  G + ++L++  ET  HFEV+G +S        S N   E+  
Sbjct: 422  YLTRLWSLAQLDAMASVTGVDVSSLIVGRETFFHFEVRGLESYKSIDGQPSVNDRWESGK 481

Query: 478  KARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSF 537
            K +    EI  V+T S+ESL G K   Y+L+L+ R ++++N   +  +  K+N G+ +  
Sbjct: 482  KDKHTPLEILYVMTVSDESLLGDKFAGYDLSLD-RSEKSDNVVHIEPVLEKMNLGEPIYL 540

Query: 538  YTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHG 597
             + KE    +G   ++SSL+WMG   SDVI R+ VLLSP +G+WFS + +P PGHILI+G
Sbjct: 541  KSAKETHCNKGVSPDISSLTWMGPIVSDVIKRMTVLLSPAAGMWFSKFKIPSPGHILIYG 600

Query: 598  PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPS 657
            PPGSGKT LA+A AK  E  KDL+AH++ V CS L+LEK   I   LS+ I+E L+HAPS
Sbjct: 601  PPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSSVIAEGLEHAPS 660

Query: 658  IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ 717
            ++I D+LDSIISSSSD EG+Q S  V  LTKFL D++D+YGE R SSCGIGP+AFVAS Q
Sbjct: 661  VIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYGEYRNSSCGIGPLAFVASVQ 720

Query: 718  SLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777
            SLE+IPQ+L+SSGRFDFHVQL APA SER AIL+HEIQ+R L+CS++ILL++A+KC+GYD
Sbjct: 721  SLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLDCSEDILLNLAAKCEGYD 780

Query: 778  AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE 837
            AYDLEILVDR VHAA+GR+L  +S+  K+    LV++DF++AMH+F+PVAMRDITK+++E
Sbjct: 781  AYDLEILVDRAVHAAIGRHLPLESNISKY---NLVKEDFTRAMHDFVPVAMRDITKSASE 837

Query: 838  GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGA 897
            GGR GW+DVGG+TDI+NAIKEMIELPSKFP IFA++PLRLRSNVLLYGPPGCGKTHIVGA
Sbjct: 838  GGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGA 897

Query: 898  AAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957
            AAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA AAAPC+LFFDEFDSIAPKRGHDN
Sbjct: 898  AAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDN 957

Query: 958  TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER 1017
            TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD ALLRPGRLDRLL CDFPSP ER
Sbjct: 958  TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPER 1017

Query: 1018 LDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGK 1077
            L+IL V+SRKL +ADD+DLE IA MTEGFSGADLQALLSDAQL+AVHE LN  D  E G 
Sbjct: 1018 LEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALLSDAQLAAVHEYLNREDKPETGT 1077

Query: 1078 MPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA 1134
             P+ITD LLKSIASK +PSVSE EK +LY IY QFLDS+KS    SR+AKGKRATLA
Sbjct: 1078 TPIITDPLLKSIASKTKPSVSETEKQKLYDIYSQFLDSRKS----SREAKGKRATLA 1130
Involved in PTS1- and PTS2-dependent protein import into peroxisomes. May form heteromeric AAA ATPase complexes required for the import of proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1 Back     alignment and function description
>sp|Q5BL07|PEX1_MOUSE Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2 Back     alignment and function description
>sp|Q54GX5|PEX1_DICDI Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1 Back     alignment and function description
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris GN=PEX1 PE=3 SV=1 Back     alignment and function description
>sp|P24004|PEX1_YEAST Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX1 PE=1 SV=2 Back     alignment and function description
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat PE=1 SV=1 Back     alignment and function description
>sp|O74941|PEX1_SCHPO Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex1 PE=3 SV=1 Back     alignment and function description
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1 Back     alignment and function description
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1134
2254651331134 PREDICTED: peroxisome biogenesis protein 0.997 0.997 0.722 0.0
2555530551137 peroxisome biogenesis factor, putative [ 0.993 0.991 0.716 0.0
3021432451114 unnamed protein product [Vitis vinifera] 0.979 0.997 0.715 0.0
3565216041130 PREDICTED: peroxisome biogenesis protein 0.990 0.993 0.655 0.0
4494876821123 PREDICTED: peroxisome biogenesis protein 0.976 0.985 0.621 0.0
2978068911122 peroxisome biogenesis protein PEX1 [Arab 0.985 0.995 0.630 0.0
120062721119 peroxisome biogenesis protein PEX1 [Arab 0.982 0.995 0.624 0.0
306824051130 peroxisome 1 [Arabidopsis thaliana] gi|3 0.982 0.985 0.624 0.0
97593411125 unnamed protein product [Arabidopsis tha 0.976 0.984 0.622 0.0
2420818731094 hypothetical protein SORBIDRAFT_07g02447 0.957 0.992 0.503 0.0
>gi|225465133|ref|XP_002273767.1| PREDICTED: peroxisome biogenesis protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1632 bits (4225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 821/1137 (72%), Positives = 947/1137 (83%), Gaps = 6/1137 (0%)

Query: 1    MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS 60
            MEL VR VGG+E+CFVSLPL LI+TL+ST S  LLP VL+LELRS +N  WVVAWSG+ S
Sbjct: 1    MELAVRTVGGIESCFVSLPLPLIQTLQSTSSG-LLPPVLALELRSSNNDVWVVAWSGSAS 59

Query: 61   SSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAA 120
            +SS IEVARQFAECISL DHT VQVR V+N+ KATLVTIEP TEDDWEVLELN+EHAEAA
Sbjct: 60   TSSSIEVARQFAECISLPDHTAVQVRAVANLPKATLVTIEPHTEDDWEVLELNAEHAEAA 119

Query: 121  ILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVKKH 180
            IL Q+ IVHEAMRFPLWLHGRT ITF VVSTFPKK VVQLVPGTEVAVAPKRRK  +  H
Sbjct: 120  ILKQIGIVHEAMRFPLWLHGRTTITFLVVSTFPKKAVVQLVPGTEVAVAPKRRKKYLDSH 179

Query: 181  EDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVSLC 240
            +++ +Q+ N+   IAKALLRVQDS + L HK  VKGVELGV LT+V +I+PETA N S  
Sbjct: 180  KNALVQSSNKDHPIAKALLRVQDSGQKLIHKSEVKGVELGVVLTNVVYIHPETARNYSFD 239

Query: 241  SLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAK 300
            SL+LV ++PR  SK N  + +  R KS  T+KE S G + DKKE  Q VV LL S+SVAK
Sbjct: 240  SLQLVILVPRSPSKGNYNDTDMFRKKSISTAKEFSDGLA-DKKEPCQVVVRLLISESVAK 298

Query: 301  GHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFG-IGLE- 358
            GHV +A++LR YL  GLHSWVY+K+C +NLKKEI ++SLSPC FKM EK+KA    GLE 
Sbjct: 299  GHVMMAQSLRHYLRTGLHSWVYMKRCDINLKKEISLLSLSPCQFKMFEKNKALEENGLEV 358

Query: 359  LDN-KNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLE 417
            LD+  NHKTK ML +T+S  YM+  D S  ++  AALS E    EDE+   Q  ++KGL+
Sbjct: 359  LDSLTNHKTKSMLLETNSDTYMNISDWSTHEEFAAALSFESPGSEDEKTSSQSGSRKGLQ 418

Query: 418  CLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKT 477
             LL  W LA L A+ SN G+E ++LV+ NETLLHF V   K GT GK  AS NG+ +N++
Sbjct: 419  SLLQAWFLAHLDAINSNAGTEIDSLVVGNETLLHFNVTSDKFGTLGKFQASSNGSSKNRS 478

Query: 478  KARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSF 537
               +L  EI  +L  SEES H GK NAYEL+   R ++NNN   +  L G L  G+ VSF
Sbjct: 479  SYGDLSVEILYILAISEESQHSGKFNAYELSFPERNKRNNNLGNLELLVGNLRLGEPVSF 538

Query: 538  YTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHG 597
            Y +KER S +GF    SSLSW+GT ASD+INR+  LLSP SG+WFSTY+LPLPGH+LI+G
Sbjct: 539  YCMKERTSAKGFSLTASSLSWIGTAASDIINRLTTLLSPASGMWFSTYNLPLPGHVLIYG 598

Query: 598  PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPS 657
            PPGSGKT LA+ VAK+LE  +DL+ HIVFV CS+L+LEK   IRQALS+++S+ALDH PS
Sbjct: 599  PPGSGKTLLARTVAKALEEQEDLLTHIVFVSCSQLALEKAVTIRQALSSYLSDALDHVPS 658

Query: 658  IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ 717
            +VIFD+LD IISSSSD EGSQPSTSV ALT++L DI+DEYGEKRK+SCGIGP+AF+ASAQ
Sbjct: 659  LVIFDDLDLIISSSSDLEGSQPSTSVTALTEYLTDILDEYGEKRKNSCGIGPLAFIASAQ 718

Query: 718  SLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777
            SLE +PQSL+SSGRFDFHVQLPAPAA+ER AIL+HEIQ+RSL+C+D+IL DVASKCDGYD
Sbjct: 719  SLENVPQSLSSSGRFDFHVQLPAPAATERMAILKHEIQKRSLQCADDILSDVASKCDGYD 778

Query: 778  AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE 837
            AYDLEILVDRT+HAA+GR+  S+S+F+K  KPTLVRDDFSQAMHEFLPVAMRDITK+++E
Sbjct: 779  AYDLEILVDRTIHAAIGRFFPSNSAFDKSEKPTLVRDDFSQAMHEFLPVAMRDITKSASE 838

Query: 838  GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGA 897
            GGRSGW+DVGGL DI+NAIKEMIELPSKFP+IFAQ+PLRLRSNVLLYGPPGCGKTHIVGA
Sbjct: 839  GGRSGWEDVGGLVDIRNAIKEMIELPSKFPSIFAQSPLRLRSNVLLYGPPGCGKTHIVGA 898

Query: 898  AAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957
            AAAACSLRFISVKGPELLNKYIGASEQAVRDIF KA+AA+PCLLFFDEFDSIAPKRGHDN
Sbjct: 899  AAAACSLRFISVKGPELLNKYIGASEQAVRDIFLKASAASPCLLFFDEFDSIAPKRGHDN 958

Query: 958  TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER 1017
            TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPS RER
Sbjct: 959  TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSRRER 1018

Query: 1018 LDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGK 1077
            LDIL V+SRKLPLADDV ++AIA+MTEGFSGADLQALLSDAQL+AVHE+L   D+ EPGK
Sbjct: 1019 LDILTVLSRKLPLADDVAMDAIAYMTEGFSGADLQALLSDAQLAAVHEVLATADNKEPGK 1078

Query: 1078 MPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA 1134
            MPVITDALLKS+ASKARPSVS+AEK RLY+IY QFLDSKKS  AQSRDAKGKRATLA
Sbjct: 1079 MPVITDALLKSVASKARPSVSDAEKERLYTIYNQFLDSKKST-AQSRDAKGKRATLA 1134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255553055|ref|XP_002517570.1| peroxisome biogenesis factor, putative [Ricinus communis] gi|223543202|gb|EEF44734.1| peroxisome biogenesis factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302143245|emb|CBI20540.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521604|ref|XP_003529444.1| PREDICTED: peroxisome biogenesis protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449487682|ref|XP_004157748.1| PREDICTED: peroxisome biogenesis protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806891|ref|XP_002871329.1| peroxisome biogenesis protein PEX1 [Arabidopsis lyrata subsp. lyrata] gi|297317166|gb|EFH47588.1| peroxisome biogenesis protein PEX1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12006272|gb|AAG44817.1| peroxisome biogenesis protein PEX1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30682405|ref|NP_196464.2| peroxisome 1 [Arabidopsis thaliana] gi|322967561|sp|Q9FNP1.2|PEX1_ARATH RecName: Full=Peroxisome biogenesis protein 1; AltName: Full=Peroxin-1; Short=AtPEX1 gi|332003924|gb|AED91307.1| peroxisome 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759341|dbj|BAB09996.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242081873|ref|XP_002445705.1| hypothetical protein SORBIDRAFT_07g024470 [Sorghum bicolor] gi|241942055|gb|EES15200.1| hypothetical protein SORBIDRAFT_07g024470 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1134
TAIR|locus:21595571130 PEX1 "peroxisome 1" [Arabidops 0.980 0.984 0.602 0.0
DICTYBASE|DDB_G02898671227 pex1 "peroxisomal biogenesis f 0.322 0.298 0.441 1.7e-123
UNIPROTKB|E1BPU3 1281 PEX1 "Uncharacterized protein" 0.390 0.345 0.434 1.7e-114
UNIPROTKB|E2RLT2 1267 PEX1 "Uncharacterized protein" 0.404 0.362 0.422 8.1e-114
UNIPROTKB|E1BY08 1290 PEX1 "Uncharacterized protein" 0.409 0.359 0.428 8.5e-114
RGD|1559939 1283 Pex1 "peroxisomal biogenesis f 0.390 0.345 0.430 1.7e-113
MGI|MGI:1918632 1284 Pex1 "peroxisomal biogenesis f 0.425 0.375 0.410 2.3e-113
UNIPROTKB|O43933 1283 PEX1 "Peroxisome biogenesis fa 0.407 0.360 0.430 1.9e-112
UNIPROTKB|E2RCK9 1416 PEX1 "Uncharacterized protein" 0.404 0.324 0.422 2e-110
ZFIN|ZDB-GENE-070530-1 1237 pex1 "peroxisome biogenesis fa 0.402 0.368 0.421 2.4e-108
TAIR|locus:2159557 PEX1 "peroxisome 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3336 (1179.4 bits), Expect = 0., P = 0.
 Identities = 686/1139 (60%), Positives = 838/1139 (73%)

Query:     1 MELE--VRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGA 58
             ME E  V  V GV+ CFVSLP +L+  L+ST S+ L P +L +ELRS  ++RW VAWSG+
Sbjct:    14 METEAVVNTVAGVD-CFVSLPRQLLHALQSTSSSPL-PPLLPVELRS-GDRRWSVAWSGS 70

Query:    59 TSSSSFIEVARQFAECISLADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAE 118
             +SSSS IE+AR FAE ISL D T+V+VRV+ NV KATLVT+EP TEDDWEVLELN+E AE
Sbjct:    71 SSSSSAIEIARVFAESISLPDGTVVKVRVLPNVPKATLVTVEPETEDDWEVLELNAELAE 130

Query:   119 AAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAPKRRKNNVK 178
             AAIL+QVRI+HE M+FPLWLH RT+I F VVSTFP K VVQLVPGTEVAVAPKRR  N+K
Sbjct:   131 AAILSQVRILHETMKFPLWLHDRTVIRFSVVSTFPSKGVVQLVPGTEVAVAPKRRDRNLK 190

Query:   179 KHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238
               +    +  N      KALLRVQ++D    H+ +VKG EL VALTS+A+I+PETA+  S
Sbjct:   191 AKKSQEKECNN-----VKALLRVQETDRSAFHEADVKGFELRVALTSIAYIHPETAKKHS 245

Query:   239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSV 298
             L SL+L+++ PR+  K +  ++ A  +K++  SK    G S+ KKE RQA++ L+FSD  
Sbjct:   246 LESLQLISVSPRIPLKGSAKKDEALNMKNSEASKVAENGTSSAKKEPRQAILRLVFSDLA 305

Query:   299 AKGHVKIARALRLYLNAGLHSWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLE 358
             AKGH+ +  +LRLYL AGLHSWVYL+ C VN  KEIP +SLSPC FK+ E +K    G +
Sbjct:   306 AKGHLMMVESLRLYLGAGLHSWVYLRGCNVNEDKEIPALSLSPCVFKISENEKVLDKGTD 365

Query:   359 -LDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLE 417
              L N N   K     +    Y+D  D S  D ++ ALSSE    E        +NKKGLE
Sbjct:   366 RLGNNNSVRKSSHPPSGLSTYVDVVDWSVHDKVVTALSSEGLHDEGNHD----KNKKGLE 421

Query:   418 CLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPA--SCNGALEN 475
              L   W LAQL A+AS  G + ++L++  ET  HFEV+G +S  Y  +    S N   E+
Sbjct:   422 YLTRLWSLAQLDAMASVTGVDVSSLIVGRETFFHFEVRGLES--YKSIDGQPSVNDRWES 479

Query:   476 KTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSV 535
               K +    EI  V+T S+ESL G K   Y+L+L+ R ++++N   +  +  K+N G+ +
Sbjct:   480 GKKDKHTPLEILYVMTVSDESLLGDKFAGYDLSLD-RSEKSDNVVHIEPVLEKMNLGEPI 538

Query:   536 SFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILI 595
                + KE    +G   ++SSL+WMG   SDVI R+ VLLSP +G+WFS + +P PGHILI
Sbjct:   539 YLKSAKETHCNKGVSPDISSLTWMGPIVSDVIKRMTVLLSPAAGMWFSKFKIPSPGHILI 598

Query:   596 HGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA 655
             +GPPGSGKT LA+A AK  E  KDL+AH++ V CS L+LEK   I   LS+ I+E L+HA
Sbjct:   599 YGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSSVIAEGLEHA 658

Query:   656 PSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715
             PS++I D+L                  V  LTKFL D++D+YGE R SSCGIGP+AFVAS
Sbjct:   659 PSVIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYGEYRNSSCGIGPLAFVAS 718

Query:   716 AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775
              QSLE+IPQ+L+SSGRFDFHVQL APA SER AIL+HEIQ+R L+CS++ILL++A+KC+G
Sbjct:   719 VQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLDCSEDILLNLAAKCEG 778

Query:   776 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS 835
             YDAYDLEILVDR VHAA+GR+L  +S+  K+    LV++DF++AMH+F+PVAMRDITK++
Sbjct:   779 YDAYDLEILVDRAVHAAIGRHLPLESNISKY---NLVKEDFTRAMHDFVPVAMRDITKSA 835

Query:   836 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIV 895
             +EGGR GW+DVGG+TDI+NAIKEMIELPSKFP IFA++PLRLRSNVLLYGPPGCGKTHIV
Sbjct:   836 SEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIV 895

Query:   896 GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955
             GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA AAAPC+LFFDEFDSIAPKRGH
Sbjct:   896 GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGH 955

Query:   956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPR 1015
             DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD ALLRPGRLDRLL CDFPSP 
Sbjct:   956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPP 1015

Query:  1016 ERLDILKVISRKLPLADDVDLEAIAHMTEGFSGXXXXXXXXXXXXXXVHEILNNIDSNEP 1075
             ERL+IL V+SRKL +ADD+DLE IA MTEGFSG              VHE LN  D  E 
Sbjct:  1016 ERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALLSDAQLAAVHEYLNREDKPET 1075

Query:  1076 GKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA 1134
             G  P+ITD LLKSIASK +PSVSE EK +LY IY QFLDS+KS    SR+AKGKRATLA
Sbjct:  1076 GTTPIITDPLLKSIASKTKPSVSETEKQKLYDIYSQFLDSRKS----SREAKGKRATLA 1130
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0007031 "peroxisome organization" evidence=IEA;RCA
GO:0016887 "ATPase activity" evidence=ISS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP
GO:0016558 "protein import into peroxisome matrix" evidence=RCA;IMP
GO:0005515 "protein binding" evidence=IPI
DICTYBASE|DDB_G0289867 pex1 "peroxisomal biogenesis factor 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPU3 PEX1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLT2 PEX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BY08 PEX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1559939 Pex1 "peroxisomal biogenesis factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1918632 Pex1 "peroxisomal biogenesis factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O43933 PEX1 "Peroxisome biogenesis factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCK9 PEX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070530-1 pex1 "peroxisome biogenesis factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNP1PEX1_ARATHNo assigned EC number0.62440.98230.9858yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1134
TIGR01243733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 1e-100
COG0464494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 5e-96
COG1222406 COG1222, RPT1, ATP-dependent 26S proteasome regula 5e-66
PRK03992389 PRK03992, PRK03992, proteasome-activating nucleoti 2e-63
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 1e-62
TIGR01243 733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 9e-59
TIGR01241 495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 7e-56
CHL00176 638 CHL00176, ftsH, cell division protein; Validated 9e-52
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 5e-51
pfam00004131 pfam00004, AAA, ATPase family associated with vari 3e-46
PRK10733 644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 2e-45
COG0465 596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 8e-45
TIGR03689512 TIGR03689, pup_AAA, proteasome ATPase 3e-44
PTZ00361438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 5e-42
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 2e-37
COG0464 494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 4e-37
pfam0926278 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, 4e-27
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 2e-21
pfam00004131 pfam00004, AAA, ATPase family associated with vari 6e-17
CHL00195489 CHL00195, ycf46, Ycf46; Provisional 7e-15
smart00382148 smart00382, AAA, ATPases associated with a variety 2e-12
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 2e-10
TIGR01241495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 1e-09
COG1222406 COG1222, RPT1, ATP-dependent 26S proteasome regula 3e-09
smart00382148 smart00382, AAA, ATPases associated with a variety 6e-08
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 8e-08
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 9e-07
PRK03992389 PRK03992, PRK03992, proteasome-activating nucleoti 1e-06
PRK10733644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 3e-06
COG0465596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 3e-06
TIGR03689512 TIGR03689, pup_AAA, proteasome ATPase 9e-06
PTZ00361438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 1e-05
COG0714329 COG0714, COG0714, MoxR-like ATPases [General funct 3e-05
CHL00195489 CHL00195, ycf46, Ycf46; Provisional 1e-04
PRK00080328 PRK00080, ruvB, Holliday junction DNA helicase Ruv 1e-04
CHL00176638 CHL00176, ftsH, cell division protein; Validated 2e-04
pfam13481154 pfam13481, AAA_25, AAA domain 2e-04
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 2e-04
pfam13207114 pfam13207, AAA_17, AAA domain 2e-04
pfam13401124 pfam13401, AAA_22, AAA domain 2e-04
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 6e-04
COG2255332 COG2255, RuvB, Holliday junction resolvasome, heli 7e-04
COG0593408 COG0593, DnaA, ATPase involved in DNA replication 0.001
TIGR02928365 TIGR02928, TIGR02928, orc1/cdc6 family replication 0.002
pfam07726131 pfam07726, AAA_3, ATPase family associated with va 0.002
PRK13342413 PRK13342, PRK13342, recombination factor protein R 0.002
pfam05496231 pfam05496, RuvB_N, Holliday junction DNA helicase 0.002
TIGR03922557 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas 0.004
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information 
 Score =  334 bits (858), Expect = e-100
 Identities = 197/556 (35%), Positives = 296/556 (53%), Gaps = 59/556 (10%)

Query: 590  PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII--------R 641
            P  +L++GPPG+GKT LAKAVA          A   F+  +      GP I         
Sbjct: 212  PKGVLLYGPPGTGKTLLAKAVANE--------AGAYFISIN------GPEIMSKYYGESE 257

Query: 642  QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701
            + L     EA ++APSI+  D +D+I     +  G +    V+A    L+ +MD  G K 
Sbjct: 258  ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG-EVEKRVVAQ---LLTLMD--GLK- 310

Query: 702  KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
                G G +  + +    + +  +L   GRFD  + +  P    RK IL+  +  R++  
Sbjct: 311  ----GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILK--VHTRNMPL 364

Query: 762  SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLHSDS-SFEKHIKPTLV------- 812
            ++++ LD +A    G+   DL  L      AA+ R++     +FE    P  V       
Sbjct: 365  AEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVT 424

Query: 813  RDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 872
              DF +A+    P A+R++     E     W D+GGL +++  ++E +E P K P IF +
Sbjct: 425  MKDFMEALKMVEPSAIREVL---VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEK 481

Query: 873  APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSK 932
              +R    VLL+GPPG GKT +  A A      FI+V+GPE+L+K++G SE+A+R+IF K
Sbjct: 482  MGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRK 541

Query: 933  ATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991
            A  AAP ++FFDE D+IAP RG   +T VTDR+VNQ LTE+DG++ L+ V V AAT+RPD
Sbjct: 542  ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601

Query: 992  LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADL 1051
            +LD ALLRPGR DRL+    P    R +I K+ +R +PLA+DVDLE +A MTEG++GAD+
Sbjct: 602  ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADI 661

Query: 1052 QALLSDAQLSAVHEILNNI-------DSNEPGKMPVITDALLKSIASKARPSVSEAEKLR 1104
            +A+  +A ++A+ E + +           E  K   +          K +PSVS+ + LR
Sbjct: 662  EAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLR 721

Query: 1105 LYSIYGQFLDSKKSVA 1120
                Y +     K + 
Sbjct: 722  ----YERLAKELKRLT 733

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|220158 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-terminal Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional Back     alignment and domain information
>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein Back     alignment and domain information
>gnl|CDD|116340 pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed Back     alignment and domain information
>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus Back     alignment and domain information
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1134
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 100.0
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0736953 consensus Peroxisome assembly factor 2 containing 100.0
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 100.0
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 100.0
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 100.0
CHL00195489 ycf46 Ycf46; Provisional 100.0
KOG0734 752 consensus AAA+-type ATPase containing the peptidas 100.0
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 100.0
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 100.0
KOG0731 774 consensus AAA+-type ATPase containing the peptidas 100.0
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 100.0
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 100.0
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
PRK03992389 proteasome-activating nucleotidase; Provisional 100.0
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 100.0
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 100.0
COG0465 596 HflB ATP-dependent Zn proteases [Posttranslational 100.0
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 100.0
KOG0741 744 consensus AAA+-type ATPase [Posttranslational modi 100.0
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 100.0
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0730 693 consensus AAA+-type ATPase [Posttranslational modi 100.0
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 100.0
CHL00176 638 ftsH cell division protein; Validated 100.0
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 100.0
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 100.0
CHL00206 2281 ycf2 Ycf2; Provisional 100.0
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.97
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.97
PRK10733 644 hflB ATP-dependent metalloprotease; Reviewed 99.97
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 99.97
KOG0734752 consensus AAA+-type ATPase containing the peptidas 99.97
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 99.97
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 99.96
KOG0736953 consensus Peroxisome assembly factor 2 containing 99.96
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.96
KOG0731774 consensus AAA+-type ATPase containing the peptidas 99.96
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 99.96
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 99.96
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 99.96
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 99.96
CHL00095821 clpC Clp protease ATP binding subunit 99.96
CHL00195489 ycf46 Ycf46; Provisional 99.96
PF0926280 PEX-1N: Peroxisome biogenesis factor 1, N-terminal 99.96
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 99.96
PRK03992389 proteasome-activating nucleotidase; Provisional 99.95
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 99.95
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 99.95
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 99.95
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.95
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 99.95
PRK10865857 protein disaggregation chaperone; Provisional 99.95
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 99.95
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 99.94
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 99.94
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 99.94
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 99.94
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.94
CHL00176638 ftsH cell division protein; Validated 99.93
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.93
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 99.93
CHL002062281 ycf2 Ycf2; Provisional 99.93
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 99.91
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 99.91
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 99.9
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.9
CHL00181287 cbbX CbbX; Provisional 99.88
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.86
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.85
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.83
PF00004132 AAA: ATPase family associated with various cellula 99.82
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.82
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.79
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.79
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.76
CHL00181287 cbbX CbbX; Provisional 99.76
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.76
PF0926387 PEX-2N: Peroxisome biogenesis factor 1, N-terminal 99.74
COG2256 436 MGS1 ATPase related to the helicase subunit of the 99.72
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.71
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 99.71
PF00004132 AAA: ATPase family associated with various cellula 99.71
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.7
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.68
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.68
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.68
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.68
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.68
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.67
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.62
KOG2028 554 consensus ATPase related to the helicase subunit o 99.61
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.61
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.6
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 99.6
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.59
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 99.59
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.58
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.58
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 99.58
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.58
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 99.58
TIGR00763775 lon ATP-dependent protease La. This protein is ind 99.57
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.56
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 99.56
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 99.56
PRK13342 413 recombination factor protein RarA; Reviewed 99.56
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.56
COG0466 782 Lon ATP-dependent Lon protease, bacterial type [Po 99.56
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 99.55
KOG2004 906 consensus Mitochondrial ATP-dependent protease PIM 99.54
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 99.54
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.53
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 99.53
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 99.53
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.53
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 99.52
PRK07940394 DNA polymerase III subunit delta'; Validated 99.52
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 99.52
PRK10865 857 protein disaggregation chaperone; Provisional 99.52
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.51
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 99.51
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.5
PLN03025319 replication factor C subunit; Provisional 99.5
PRK04195 482 replication factor C large subunit; Provisional 99.5
PTZ001121164 origin recognition complex 1 protein; Provisional 99.5
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.5
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 99.5
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 99.49
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.49
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.48
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.48
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 99.48
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 99.47
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.47
PRK00149450 dnaA chromosomal replication initiation protein; R 99.47
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.47
PRK12402337 replication factor C small subunit 2; Reviewed 99.46
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.46
CHL00095 821 clpC Clp protease ATP binding subunit 99.46
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 99.46
COG2256436 MGS1 ATPase related to the helicase subunit of the 99.46
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.46
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 99.45
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.45
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.45
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.45
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 99.45
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 99.45
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.45
PRK14088440 dnaA chromosomal replication initiation protein; P 99.45
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.44
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 99.44
PRK06893229 DNA replication initiation factor; Validated 99.44
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 99.44
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 99.44
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.43
PRK13341 725 recombination factor protein RarA/unknown domain f 99.43
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.43
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 99.43
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 99.43
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 99.43
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.43
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 99.43
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 99.42
PTZ00112 1164 origin recognition complex 1 protein; Provisional 99.42
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.42
PHA02544316 44 clamp loader, small subunit; Provisional 99.41
PLN03025319 replication factor C subunit; Provisional 99.41
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.41
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 99.41
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.4
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 99.4
PRK14086617 dnaA chromosomal replication initiation protein; P 99.4
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 99.4
PRK04195482 replication factor C large subunit; Provisional 99.4
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 99.39
PRK00149450 dnaA chromosomal replication initiation protein; R 99.39
PRK08084235 DNA replication initiation factor; Provisional 99.38
COG2812 515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.38
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.38
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 99.38
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 99.38
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.38
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.38
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.37
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 99.37
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 99.37
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 99.37
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 99.36
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 99.36
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.36
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 99.36
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 99.36
PRK13342413 recombination factor protein RarA; Reviewed 99.35
PRK12422445 chromosomal replication initiation protein; Provis 99.35
PHA02544316 44 clamp loader, small subunit; Provisional 99.35
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.34
PRK12402337 replication factor C small subunit 2; Reviewed 99.34
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.34
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 99.34
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 99.34
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 99.33
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 99.33
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.33
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 99.33
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.33
PRK13341 725 recombination factor protein RarA/unknown domain f 99.32
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 99.32
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.31
PRK00440319 rfc replication factor C small subunit; Reviewed 99.31
PRK12422445 chromosomal replication initiation protein; Provis 99.31
PRK06893229 DNA replication initiation factor; Validated 99.31
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.31
PRK14088440 dnaA chromosomal replication initiation protein; P 99.31
PRK08727233 hypothetical protein; Validated 99.31
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.3
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 99.3
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 99.3
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 99.29
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.29
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 99.29
PRK05642234 DNA replication initiation factor; Validated 99.29
PRK14087450 dnaA chromosomal replication initiation protein; P 99.29
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.29
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 99.27
PRK07940394 DNA polymerase III subunit delta'; Validated 99.26
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.26
PRK00440319 rfc replication factor C small subunit; Reviewed 99.26
PRK14086617 dnaA chromosomal replication initiation protein; P 99.26
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.25
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.24
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 99.23
PRK08084235 DNA replication initiation factor; Provisional 99.23
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.23
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.22
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 99.21
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.21
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.21
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 99.2
PRK06620214 hypothetical protein; Validated 99.2
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 99.2
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 99.19
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.18
PRK08727233 hypothetical protein; Validated 99.18
PRK05642234 DNA replication initiation factor; Validated 99.18
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 99.17
COG0593408 DnaA ATPase involved in DNA replication initiation 99.16
PRK14087450 dnaA chromosomal replication initiation protein; P 99.16
COG1224 450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.16
PRK09087226 hypothetical protein; Validated 99.15
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 99.15
PRK09112351 DNA polymerase III subunit delta'; Validated 99.15
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.14
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.14
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.13
KOG2028554 consensus ATPase related to the helicase subunit o 99.12
PRK07471365 DNA polymerase III subunit delta'; Validated 99.12
PHA02244383 ATPase-like protein 99.12
KOG1969 877 consensus DNA replication checkpoint protein CHL12 99.12
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 99.12
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.11
PRK06620214 hypothetical protein; Validated 99.1
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.1
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.09
PRK05564313 DNA polymerase III subunit delta'; Validated 99.08
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.07
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 99.06
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.06
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.03
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 99.03
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.03
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.03
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 99.02
PRK11331459 5-methylcytosine-specific restriction enzyme subun 99.02
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.02
PRK07399314 DNA polymerase III subunit delta'; Validated 99.01
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 99.01
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.99
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 98.99
TIGR02974329 phageshock_pspF psp operon transcriptional activat 98.98
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 98.97
TIGR00602 637 rad24 checkpoint protein rad24. This family is bas 98.97
KOG1969877 consensus DNA replication checkpoint protein CHL12 98.97
PRK04132846 replication factor C small subunit; Provisional 98.97
PRK05707328 DNA polymerase III subunit delta'; Validated 98.96
smart00382148 AAA ATPases associated with a variety of cellular 98.96
COG0714329 MoxR-like ATPases [General function prediction onl 98.95
PRK13531 498 regulatory ATPase RavA; Provisional 98.95
PRK11608326 pspF phage shock protein operon transcriptional ac 98.94
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 98.94
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 98.94
COG0470325 HolB ATPase involved in DNA replication [DNA repli 98.93
PRK04132846 replication factor C small subunit; Provisional 98.92
PRK09087226 hypothetical protein; Validated 98.92
PRK09112351 DNA polymerase III subunit delta'; Validated 98.91
PRK08058329 DNA polymerase III subunit delta'; Validated 98.91
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 98.91
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 98.91
COG0593408 DnaA ATPase involved in DNA replication initiation 98.9
KOG0745564 consensus Putative ATP-dependent Clp-type protease 98.9
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 98.89
PRK13407334 bchI magnesium chelatase subunit I; Provisional 98.89
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 98.89
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.88
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 98.88
TIGR01817534 nifA Nif-specific regulatory protein. This model r 98.87
KOG0745564 consensus Putative ATP-dependent Clp-type protease 98.87
COG1221403 PspF Transcriptional regulators containing an AAA- 98.87
PRK05564313 DNA polymerase III subunit delta'; Validated 98.86
PRK07471365 DNA polymerase III subunit delta'; Validated 98.86
COG3829560 RocR Transcriptional regulator containing PAS, AAA 98.85
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 98.83
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 98.82
COG2204464 AtoC Response regulator containing CheY-like recei 98.81
PRK13531498 regulatory ATPase RavA; Provisional 98.81
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.8
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 98.79
PRK15429686 formate hydrogenlyase transcriptional activator Fh 98.78
PRK06964342 DNA polymerase III subunit delta'; Validated 98.78
PRK11331459 5-methylcytosine-specific restriction enzyme subun 98.78
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 98.78
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.78
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 98.78
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 98.77
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 98.77
PRK05707328 DNA polymerase III subunit delta'; Validated 98.76
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 98.76
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 98.76
smart00382148 AAA ATPases associated with a variety of cellular 98.75
PHA02244383 ATPase-like protein 98.74
PRK15424538 propionate catabolism operon regulatory protein Pr 98.74
COG3829560 RocR Transcriptional regulator containing PAS, AAA 98.73
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.73
PRK06871325 DNA polymerase III subunit delta'; Validated 98.73
TIGR02329526 propionate_PrpR propionate catabolism operon regul 98.73
PRK15424538 propionate catabolism operon regulatory protein Pr 98.72
PRK07399314 DNA polymerase III subunit delta'; Validated 98.72
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 98.72
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 98.71
TIGR02329526 propionate_PrpR propionate catabolism operon regul 98.71
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 98.71
PRK07993334 DNA polymerase III subunit delta'; Validated 98.7
TIGR01817534 nifA Nif-specific regulatory protein. This model r 98.7
COG0714329 MoxR-like ATPases [General function prediction onl 98.7
KOG1514767 consensus Origin recognition complex, subunit 1, a 98.69
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 98.66
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.66
smart00350509 MCM minichromosome maintenance proteins. 98.66
PF07726131 AAA_3: ATPase family associated with various cellu 98.65
PRK08769319 DNA polymerase III subunit delta'; Validated 98.64
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.63
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.63
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.62
TIGR02974329 phageshock_pspF psp operon transcriptional activat 98.62
smart00350509 MCM minichromosome maintenance proteins. 98.62
PRK08058329 DNA polymerase III subunit delta'; Validated 98.61
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 98.6
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 98.6
COG1221403 PspF Transcriptional regulators containing an AAA- 98.6
PRK06090319 DNA polymerase III subunit delta'; Validated 98.59
PRK11608326 pspF phage shock protein operon transcriptional ac 98.59
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.59
PRK07993334 DNA polymerase III subunit delta'; Validated 98.59
COG0470325 HolB ATPase involved in DNA replication [DNA repli 98.58
PRK06871325 DNA polymerase III subunit delta'; Validated 98.58
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 98.58
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 98.58
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.58
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 98.57
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 98.57
PRK08116268 hypothetical protein; Validated 98.56
KOG1942 456 consensus DNA helicase, TBP-interacting protein [R 98.54
PF07726131 AAA_3: ATPase family associated with various cellu 98.54
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 98.53
KOG1514767 consensus Origin recognition complex, subunit 1, a 98.52
PRK08769319 DNA polymerase III subunit delta'; Validated 98.51
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 98.5
PRK06964342 DNA polymerase III subunit delta'; Validated 98.49
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 98.49
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.48
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 98.46
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 98.45
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 98.45
COG2204464 AtoC Response regulator containing CheY-like recei 98.44
PRK13765 637 ATP-dependent protease Lon; Provisional 98.44
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.42
COG0606490 Predicted ATPase with chaperone activity [Posttran 98.41
PRK08699325 DNA polymerase III subunit delta'; Validated 98.41
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 98.4
PRK08699325 DNA polymerase III subunit delta'; Validated 98.4
KOG2680 454 consensus DNA helicase TIP49, TBP-interacting prot 98.4
PRK09862506 putative ATP-dependent protease; Provisional 98.4
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.39
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.39
PRK15429686 formate hydrogenlyase transcriptional activator Fh 98.38
PRK15115444 response regulator GlrR; Provisional 98.38
PRK06090319 DNA polymerase III subunit delta'; Validated 98.37
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 98.34
PF13173128 AAA_14: AAA domain 98.34
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.33
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 98.33
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 98.32
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.32
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 98.3
PRK15115444 response regulator GlrR; Provisional 98.3
PRK08116268 hypothetical protein; Validated 98.3
PF05729166 NACHT: NACHT domain 98.3
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 98.3
PRK08181269 transposase; Validated 98.28
PRK06835329 DNA replication protein DnaC; Validated 98.28
PRK12377248 putative replication protein; Provisional 98.27
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 98.24
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 98.23
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 98.22
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 98.22
PRK06526254 transposase; Provisional 98.21
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.2
PRK06921266 hypothetical protein; Provisional 98.19
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.19
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.18
PF03152176 UFD1: Ubiquitin fusion degradation protein UFD1; I 98.18
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.17
PF03215519 Rad17: Rad17 cell cycle checkpoint protein 98.17
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.16
PRK07952244 DNA replication protein DnaC; Validated 98.15
PTZ00111 915 DNA replication licensing factor MCM4; Provisional 98.15
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 98.15
PRK09183259 transposase/IS protein; Provisional 98.15
PRK08939306 primosomal protein DnaI; Reviewed 98.14
PRK09302509 circadian clock protein KaiC; Reviewed 98.14
PF13173128 AAA_14: AAA domain 98.12
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.12
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 98.1
PF14516331 AAA_35: AAA-like domain 98.08
PRK05917290 DNA polymerase III subunit delta'; Validated 98.06
PF03215 519 Rad17: Rad17 cell cycle checkpoint protein 98.06
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.06
PRK07132299 DNA polymerase III subunit delta'; Validated 98.05
PRK05917290 DNA polymerase III subunit delta'; Validated 98.04
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.03
PRK12377248 putative replication protein; Provisional 98.03
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.02
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.01
PRK08181269 transposase; Validated 98.01
PRK07276290 DNA polymerase III subunit delta'; Validated 98.0
PRK09862506 putative ATP-dependent protease; Provisional 97.99
PRK06526254 transposase; Provisional 97.99
PRK05818261 DNA polymerase III subunit delta'; Validated 97.98
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 97.98
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 97.97
PRK07952244 DNA replication protein DnaC; Validated 97.97
PTZ00111915 DNA replication licensing factor MCM4; Provisional 97.96
KOG1970 634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 97.9
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 97.9
PRK06835329 DNA replication protein DnaC; Validated 97.88
COG3283511 TyrR Transcriptional regulator of aromatic amino a 97.88
PRK09183259 transposase/IS protein; Provisional 97.87
PRK06921266 hypothetical protein; Provisional 97.86
KOG3595 1395 consensus Dyneins, heavy chain [Cytoskeleton] 97.84
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 97.84
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 97.82
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.82
TIGR02237209 recomb_radB DNA repair and recombination protein R 97.82
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 97.78
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.78
KOG2170344 consensus ATPase of the AAA+ superfamily [General 97.78
PRK06851367 hypothetical protein; Provisional 97.78
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 97.75
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.72
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.72
PRK08939306 primosomal protein DnaI; Reviewed 97.71
KOG1970634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 97.7
PRK07132299 DNA polymerase III subunit delta'; Validated 97.69
PF05729166 NACHT: NACHT domain 97.68
COG1123539 ATPase components of various ABC-type transport sy 97.66
COG1484254 DnaC DNA replication protein [DNA replication, rec 97.65
COG3283511 TyrR Transcriptional regulator of aromatic amino a 97.65
COG1241682 MCM2 Predicted ATPase involved in replication cont 97.63
KOG2228408 consensus Origin recognition complex, subunit 4 [R 97.61
PHA00729226 NTP-binding motif containing protein 97.57
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 97.57
KOG0478804 consensus DNA replication licensing factor, MCM4 c 97.55
TIGR02237209 recomb_radB DNA repair and recombination protein R 97.55
COG0606490 Predicted ATPase with chaperone activity [Posttran 97.55
TIGR02688449 conserved hypothetical protein TIGR02688. Members 97.55
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.52
PRK07276290 DNA polymerase III subunit delta'; Validated 97.5
PRK05818261 DNA polymerase III subunit delta'; Validated 97.49
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 97.49
KOG2170344 consensus ATPase of the AAA+ superfamily [General 97.47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-129  Score=1113.64  Aligned_cols=935  Identities=38%  Similarity=0.569  Sum_probs=707.9

Q ss_pred             CeeEEEEeCCcccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCCC--eEEEEecCccCCCCceEecHHHHhhcCCC
Q 001162            1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ--RWVVAWSGATSSSSFIEVARQFAECISLA   78 (1134)
Q Consensus         1 m~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~--~~~~~w~g~~s~~~~iei~~~~a~~~gl~   78 (1134)
                      |++.|++.+ +|+||||||..++..+...      .|+.+|+..|.+..  .+++-|.|..++.+.||||+++|+.|||.
T Consensus         3 ~a~vV~~~~-~r~cfv~lP~ql~~ai~~~------~~~~av~~v~~~~~~~~s~~~g~~s~~se~~ieIn~~~A~~l~L~   75 (952)
T KOG0735|consen    3 MACVVNYKS-LRSCFVNLPEQLLEAISEP------VQNYAVQAVVSKNPIKKSWVFGHGSGSSENVIEINRVYAHTLGLA   75 (952)
T ss_pred             ceEEEEeee-chhhhhccHHHHHHHHhcc------ccCceeEEEEcCCChhheeecccCCCCccceEEeehhhHhhccCC
Confidence            778899998 9999999999999999964      35688888887643  33444455566678999999999999999


Q ss_pred             CCCEEEEEEeeCCccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeE
Q 001162           79 DHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV  158 (1134)
Q Consensus        79 ~~~~v~~~~~~~~~~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~  158 (1134)
                      +|+.|.++++.+++.|++|+|||+|+|||||||+||+.+|.+||+|+|||++ ++||+|++.+|+|+|+|+++.|+..||
T Consensus        76 e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps~~~g  154 (952)
T KOG0735|consen   76 ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPSMLYG  154 (952)
T ss_pred             CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeeccccee
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             EccCCCEEEEeccCCCCCccccccchhhccccchhhhhhheeeccCCCCccccccccCcccccccceeEEeCCccccccc
Q 001162          159 QLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS  238 (1134)
Q Consensus       159 ~l~~~tev~vapk~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1134)
                      ||.++|||+||||+|+...+.+++.....+...    +..+|.-      .....++|..+....+++||+  +++... 
T Consensus       155 Rl~~~Tev~VaPK~~k~~l~~~~~g~~e~n~lk----s~~lr~~------~lrs~v~~~~~p~~n~s~vyi--~~aql~-  221 (952)
T KOG0735|consen  155 RLLRGTEVLVAPKPNKSALNVKENGVIEENTLK----SRSLRKV------QLRSVVEGRLLPDSNSSTVYI--NTAQLV-  221 (952)
T ss_pred             eecCCceEEEecCcccchhhhhcccchhhhhhh----hhhhhhh------hhhhheecccccCcccceeee--ccccce-
Confidence            999999999999999988644332222111111    1112111      234457788888888889998  333211 


Q ss_pred             ccCceEEEeecCCCcCCCCCCCCCccccCccccccccCCCCCcccccceeEEEEEeeCccccCceeecHHHHHHHhcccc
Q 001162          239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLH  318 (1134)
Q Consensus       239 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  318 (1134)
                        ..+....+++...++.+        ++.+   ..+.+   .....+.+-..++|...+|..|.+++.++|.++.+...
T Consensus       222 --t~q~~~~~~k~~Lr~ss--------r~d~---~~~~~---g~~~Skvv~~~~~c~~q~P~~H~ai~~~l~~~~~tpe~  285 (952)
T KOG0735|consen  222 --TAQGPALSVKLPLRQSS--------RSDE---VYNDG---GNLKSKVVEQDVVCPKQIPEFHFAISKSLWLSYSTPED  285 (952)
T ss_pred             --eccCceeeeeccccCCc--------cchh---Hhhcc---CcchhhhhcccccCCCCCCcceeeEehhHHHhhcCCcc
Confidence              12222233333322210        0000   00100   01112233334677788999999999999999974200


Q ss_pred             ceEEEeeecccccCCCCceecccceeeeccccccccccccccccccccccccccccCCccccCCCCcchhhHHhhhcCCC
Q 001162          319 SWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEP  398 (1134)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (1134)
                                            .  +|       .+.++                        ..|.-++.+..+++-..
T Consensus       286 ----------------------d--ik-------~~l~~------------------------~iw~~~n~i~~~~~i~~  310 (952)
T KOG0735|consen  286 ----------------------D--IK-------TGLKF------------------------VIWNLNNPISSSKFIEE  310 (952)
T ss_pred             ----------------------c--hh-------cCcee------------------------eeeccccchhhhhhhHH
Confidence                                  0  11       11111                        11211111111100000


Q ss_pred             CCchhhHHHHhhhcchhhHHHHHHHHHHHhhhhccccccccccccccCCceEEEEEeccccCcCCCCCCCcCccchhhhh
Q 001162          399 SSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTK  478 (1134)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (1134)
                      .....    ..-++++++.    +-+.+.        +..+++++.+  .+.+|++....++.....+..++..+.+...
T Consensus       311 l~~vg----~p~~tkk~l~----~eL~A~--------~~~ts~li~~--t~k~~~ie~~es~~~l~nq~eV~~~w~q~~v  372 (952)
T KOG0735|consen  311 LKRVG----LPDETKKNLS----SELVAA--------KLKTSYLIDG--TLKLFEIEVLESVSSLSNQEEVVRLWDQLKV  372 (952)
T ss_pred             HHhcc----CCcccccchh----Hhhhhh--------hhccccccCC--ceEEEEeeccccccccccchHHhhHHHhhcc
Confidence            00000    0001122222    112221        2333555555  6688888763222222211222222222211


Q ss_pred             hhccchhhhhhcccccccccCCCCchhhhhHhhhccCCCChhHHHHhhcccCCCCccceeeecccCcccccccccccccc
Q 001162          479 ARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSW  558 (1134)
Q Consensus       479 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  558 (1134)
                      -+..+.|..+...+..+.+.|.|...+.+.                                 .....       .+..-
T Consensus       373 t~~~~~ei~~~~~v~~~~~~g~K~~~~~l~---------------------------------~~~~e-------~d~i~  412 (952)
T KOG0735|consen  373 TKMPPLEIKITSDVNLPVLAGIKENSPDLV---------------------------------MSPFE-------HDFIQ  412 (952)
T ss_pred             ccCCchheeeeeeecchhhhcchhcCcccc---------------------------------cCcCC-------Cceee
Confidence            111122222222222111111111000000                                 00000       11111


Q ss_pred             chhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchh
Q 001162          559 MGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP  638 (1134)
Q Consensus       559 ~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~  638 (1134)
                      ....+++..+   ..++|          +..+++|||+||+|||||.|++++++++.  ....+|+.+++|+.+.+....
T Consensus       413 ~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e  477 (952)
T KOG0735|consen  413 VPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLE  477 (952)
T ss_pred             cchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHH
Confidence            1112222221   12222          34467899999999999999999999986  344599999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC
Q 001162          639 IIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS  718 (1134)
Q Consensus       639 ~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~  718 (1134)
                      .+.+.++.+|.+|.|++|+|++|||+|.|++ .++.++.+.....+.+..++.+..+.+...+.      .+.+||+.+.
T Consensus       478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~------~ia~Iat~qe  550 (952)
T KOG0735|consen  478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLNQVIKIYLKRNR------KIAVIATGQE  550 (952)
T ss_pred             HHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHHHHHHHHHccCc------EEEEEEechh
Confidence            9999999999999999999999999999997 34556666667777888888888887765543      4899999999


Q ss_pred             CCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhccccc
Q 001162          719 LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLH  798 (1134)
Q Consensus       719 ~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~  798 (1134)
                      ...+++.|.++++|+.++.+++|+..+|.+||+..+++....+..+++..++..|+||.+.||..+++||+|.++....+
T Consensus       551 ~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris  630 (952)
T KOG0735|consen  551 LQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS  630 (952)
T ss_pred             hhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998877777788888999999999999999999999999843221


Q ss_pred             CCCccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCC
Q 001162          799 SDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLR  878 (1134)
Q Consensus       799 ~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~  878 (1134)
                            + ....++.++|.+++++|.|..+|++....+.  ..+|+||||+.++|+.+.+.++||.+|+.+|.+++++.+
T Consensus       631 ------~-~~klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~  701 (952)
T KOG0735|consen  631 ------N-GPKLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR  701 (952)
T ss_pred             ------c-CcccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc
Confidence                  1 2237999999999999999999999998876  489999999999999999999999999999999999999


Q ss_pred             CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC
Q 001162          879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT  958 (1134)
Q Consensus       879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~  958 (1134)
                      .|+|||||||||||+||.++|..++++||.++++++++||+|.+|+++|++|.+|+..+||||||||+|+++|+||++++
T Consensus       702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT  781 (952)
T KOG0735|consen  702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST  781 (952)
T ss_pred             cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHH
Q 001162          959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEA 1038 (1134)
Q Consensus       959 ~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~ 1038 (1134)
                      |+++|++||||++|||.+..++|+|+|||+|||+|||||+||||||+.++||.|++.+|++|++.+...+.++.++|++.
T Consensus       782 GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~  861 (952)
T KOG0735|consen  782 GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLEC  861 (952)
T ss_pred             CchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh--hcCCCCcHHHHHHHHHHHHHhhccc
Q 001162         1039 IAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS--KARPSVSEAEKLRLYSIYGQFLDSK 1116 (1134)
Q Consensus      1039 La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~--~~~ps~~~~~~~~~~~~~~~f~~~r 1116 (1134)
                      +|..|+|||||||++++++|.+.|+++.+.+.+  +.+..|.++..-+.....  ..+|+.+.-+-+.....|.+|.+++
T Consensus       862 ~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~--~~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  939 (952)
T KOG0735|consen  862 LAQKTDGFTGADLQSLLYNAQLAAVHEILKRED--EEGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE  939 (952)
T ss_pred             HhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC--ccccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence            999999999999999999999999999998655  333445566666665554  7889999888889999999999988


Q ss_pred             ch
Q 001162         1117 KS 1118 (1134)
Q Consensus      1117 ~~ 1118 (1134)
                      ..
T Consensus       940 ~s  941 (952)
T KOG0735|consen  940 KS  941 (952)
T ss_pred             eE
Confidence            43

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>PRK06851 hypothetical protein; Provisional Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1134
3cf1_A806 Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len 1e-71
3cf1_A 806 Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len 6e-42
1r7r_A816 The Crystal Structure Of Murine P97VCP AT 3.6A Leng 2e-71
1r7r_A 816 The Crystal Structure Of Murine P97VCP AT 3.6A Leng 4e-42
3cf0_A301 Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH 6e-57
2x8a_A274 Human Nuclear Valosin Containing Protein Like (Nvl) 7e-55
3h4m_A285 Aaa Atpase Domain Of The Proteasome- Activating Nuc 2e-44
1e32_A458 Structure Of The N-Terminal Domain And The D1 Aaa D 2e-42
3hu3_A489 Structure Of P97 N-D1 R155h Mutant In Complex With 3e-42
3hu1_A489 Structure Of P97 N-D1 R95g Mutant In Complex With A 3e-42
3hu2_A489 Structure Of P97 N-D1 R86a Mutant In Complex With A 3e-42
4b4t_L437 Near-Atomic Resolution Structural Model Of The Yeas 4e-41
2ce7_A 476 Edta Treated Length = 476 5e-41
3kds_E 465 Apo-ftsh Crystal Structure Length = 465 2e-40
1lv7_A257 Crystal Structure Of The Aaa Domain Of Ftsh Length 4e-40
2dhr_A 499 Whole Cytosolic Region Of Atp-Dependent Metalloprot 6e-40
4eiw_A 508 Whole Cytosolic Region Of Atp-Dependent Metalloprot 6e-40
1ixz_A254 Crystal Structure Of The Ftsh Atpase Domain From Th 2e-39
1iy2_A278 Crystal Structure Of The Ftsh Atpase Domain From Th 3e-39
4b4t_J405 Near-Atomic Resolution Structural Model Of The Yeas 6e-39
4b4t_K428 Near-Atomic Resolution Structural Model Of The Yeas 5e-38
4b4t_M434 Near-Atomic Resolution Structural Model Of The Yeas 1e-34
2qz4_A262 Human Paraplegin, Aaa Domain In Complex With Adp Le 3e-33
4b4t_I437 Near-Atomic Resolution Structural Model Of The Yeas 3e-32
4b4t_H467 Near-Atomic Resolution Structural Model Of The Yeas 9e-32
2r62_A268 Crystal Structure Of Helicobacter Pylori Atp Depend 1e-31
2qp9_X355 Crystal Structure Of S.Cerevisiae Vps4 Length = 355 3e-29
2rko_A331 Crystal Structure Of The Vps4p-Dimer Length = 331 4e-29
3eih_A340 Crystal Structure Of S.Cerevisiae Vps4 In The Prese 9e-29
3eie_A322 Crystal Structure Of S.Cerevisiae Vps4 In The So4-B 1e-28
1xwi_A322 Crystal Structure Of Vps4b Length = 322 1e-27
2zam_A444 Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt 4e-27
3b9p_A297 Spastin Length = 297 4e-25
3vfd_A389 Human Spastin Aaa Domain Length = 389 6e-25
3d8b_A357 Crystal Structure Of Human Fidgetin-Like Protein 1 1e-23
1wlf_A179 Structure Of The N-Terminal Domain Of Pex1 Aaa-Atpa 2e-14
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (684), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 174/477 (36%), Positives = 257/477 (53%), Gaps = 32/477 (6%)
Query: 582  FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 641
            F    +  P  IL++GPPG+GKT +A+AVA        L+     +  S+L+ E    +R
Sbjct: 230  FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 642  QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 701
            +A      EA  +AP+I+  D L                  V  L    + +MD  G K+
Sbjct: 288  KAFE----EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL----LTLMD--GLKQ 337
Query: 702  KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761
            ++      +  +A+      I  +L   GRFD  V +  P A+ R  IL+  I  ++++ 
Sbjct: 338  RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ--IHTKNMKL 390
Query: 762  SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 814
            +D++ L+ VA++  G+   DL  L       A+ + +      D + +  +  +L    D
Sbjct: 391  ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 815  DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 874
            DF  A+ +  P A+R+   T  E  +  W+D+GGL D++  ++E+++ P + P+ F +  
Sbjct: 451  DFRWALSQSNPSALRE---TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507
Query: 875  LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAT 934
            +     VL YGPPGCGKT +  A A  C   FIS+KGPELL  + G SE  VR+IF KA 
Sbjct: 508  MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Query: 935  AAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991
             AAPC+LFFDE DSIA  R     D  G  DRV+NQ LTE+DG+     VF+  AT+RPD
Sbjct: 568  QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 992  LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 1048
            ++D A+LRPGRLD+L++   P  + R+ ILK   RK P+A DVDLE +A MT GFSG
Sbjct: 628  IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 Back     alignment and structure
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Back     alignment and structure
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Back     alignment and structure
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 Back     alignment and structure
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 Back     alignment and structure
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 Back     alignment and structure
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 Back     alignment and structure
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|2CE7|A Chain A, Edta Treated Length = 476 Back     alignment and structure
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 Back     alignment and structure
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 Back     alignment and structure
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Back     alignment and structure
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 Back     alignment and structure
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 Back     alignment and structure
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 Back     alignment and structure
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 Back     alignment and structure
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 Back     alignment and structure
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 Back     alignment and structure
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 Back     alignment and structure
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 Back     alignment and structure
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 Back     alignment and structure
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 Back     alignment and structure
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 Back     alignment and structure
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 Back     alignment and structure
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 Back     alignment and structure
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 Back     alignment and structure
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 Back     alignment and structure
>pdb|3B9P|A Chain A, Spastin Length = 297 Back     alignment and structure
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 Back     alignment and structure
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 Back     alignment and structure
>pdb|1WLF|A Chain A, Structure Of The N-Terminal Domain Of Pex1 Aaa-Atpase: Characterization Of A Putative Adaptor-Binding Domain Length = 179 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1134
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 1e-174
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 6e-82
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 1e-133
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 7e-18
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 1e-120
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 6e-18
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 7e-87
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 3e-26
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 9e-82
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 5e-13
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 6e-77
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 3e-14
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 1e-75
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 4e-12
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 2e-75
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 2e-14
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 4e-75
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 4e-15
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 2e-73
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 2e-15
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 2e-72
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 3e-15
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 5e-72
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 1e-13
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 2e-71
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 5e-13
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 1e-57
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 2e-06
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 5e-57
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 3e-06
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 7e-57
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 2e-06
2r62_A268 Cell division protease FTSH homolog; ATPase domain 1e-55
2r62_A268 Cell division protease FTSH homolog; ATPase domain 2e-05
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 2e-53
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 1e-06
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 2e-52
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 2e-52
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 2e-51
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 4e-12
1wlf_A179 PEX1, peroxisome biogenesis factor 1; N-terminal d 5e-49
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-15
2krk_A86 26S protease regulatory subunit 8; structural geno 6e-15
3kw6_A78 26S protease regulatory subunit 8; structural geno 8e-15
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 1e-14
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 3e-09
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 5e-14
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 5e-14
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 7e-14
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 4e-10
2chq_A319 Replication factor C small subunit; DNA-binding pr 3e-08
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 6e-08
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 3e-04
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 1e-07
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 1e-06
2chg_A226 Replication factor C small subunit; DNA-binding pr 2e-06
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 2e-06
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 1e-05
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 7e-05
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 2e-05
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 3e-05
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 3e-04
2qgz_A308 Helicase loader, putative primosome component; str 4e-05
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 4e-05
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 5e-05
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 8e-05
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 1e-04
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 3e-04
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 7e-04
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 8e-04
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 Back     alignment and structure
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1 Length = 179 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500 Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Length = 350 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1134
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 100.0
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 100.0
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 100.0
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 100.0
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 100.0
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 100.0
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 100.0
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 100.0
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 100.0
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 100.0
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 100.0
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 100.0
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 100.0
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 100.0
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 100.0
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 100.0
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 100.0
1wlf_A179 PEX1, peroxisome biogenesis factor 1; N-terminal d 100.0
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 100.0
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 100.0
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 100.0
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 100.0
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 100.0
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 100.0
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 100.0
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 100.0
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 100.0
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 100.0
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 100.0
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.98
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 99.98
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.97
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.97
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.97
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.97
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 99.97
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.96
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.96
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 99.95
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 99.95
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 99.95
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.94
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 99.94
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 99.94
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.93
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 99.93
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 99.93
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.93
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 99.92
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.92
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.92
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 99.91
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 99.91
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 99.91
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.9
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.9
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.89
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.88
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.87
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.84
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.83
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.82
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.81
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.79
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.78
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.76
1g41_A 444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.76
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.76
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.74
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.72
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.71
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.71
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.7
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 99.69
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.68
3pvs_A 447 Replication-associated recombination protein A; ma 99.67
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.66
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.66
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.65
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.64
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.64
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.62
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.61
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.61
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 99.61
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.61
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.61
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.6
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.6
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.6
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 99.6
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.59
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 99.59
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.59
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 99.59
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.59
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.58
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 99.58
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.58
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.58
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.57
3bos_A242 Putative DNA replication factor; P-loop containing 99.57
3bos_A242 Putative DNA replication factor; P-loop containing 99.56
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.55
3pvs_A447 Replication-associated recombination protein A; ma 99.55
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.55
2chq_A319 Replication factor C small subunit; DNA-binding pr 99.55
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.55
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.54
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.54
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.54
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.54
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 99.53
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.53
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.51
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 99.51
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.5
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.5
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.5
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 99.49
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.49
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.49
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.48
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.48
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.48
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.47
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.47
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 99.46
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.46
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 99.45
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.44
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.44
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 99.44
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 99.43
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.42
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 99.42
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 99.42
2chq_A319 Replication factor C small subunit; DNA-binding pr 99.41
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.41
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 99.4
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 99.39
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.38
3cmw_A1706 Protein RECA, recombinase A; homologous recombinat 99.37
1ojl_A304 Transcriptional regulatory protein ZRAR; response 99.37
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.36
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 99.35
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 99.34
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 99.33
1ojl_A304 Transcriptional regulatory protein ZRAR; response 99.32
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 99.3
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.29
2gno_A305 DNA polymerase III, gamma subunit-related protein; 99.28
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 99.24
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.21
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.21
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.2
3co5_A143 Putative two-component system transcriptional RES 99.19
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 99.16
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.12
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.1
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.09
2krk_A86 26S protease regulatory subunit 8; structural geno 99.08
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 99.07
2yuj_A190 Ubiquitin fusion degradation 1-like; ubiquitin-dep 99.05
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 99.04
3kw6_A78 26S protease regulatory subunit 8; structural geno 99.04
3co5_A143 Putative two-component system transcriptional RES 99.03
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 98.94
2gno_A305 DNA polymerase III, gamma subunit-related protein; 98.92
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 98.88
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 98.82
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.74
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.73
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.71
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.68
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 98.66
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 98.65
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 98.61
2fna_A357 Conserved hypothetical protein; structural genomic 98.59
3tiw_A187 Transitional endoplasmic reticulum ATPase; beta-ba 98.52
3f8t_A506 Predicted ATPase involved in replication control, 98.51
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.49
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.49
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 98.47
2fna_A357 Conserved hypothetical protein; structural genomic 98.47
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 98.45
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.44
1cz4_A185 VCP-like ATPase; double-PSI beta-barrel, beta-CLAM 98.4
2krk_A86 26S protease regulatory subunit 8; structural geno 98.38
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 98.36
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.36
3kw6_A78 26S protease regulatory subunit 8; structural geno 98.34
2qgz_A308 Helicase loader, putative primosome component; str 98.31
3qwz_A211 Transitional endoplasmic reticulum ATPase; UBX, P9 98.31
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.28
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 98.25
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.24
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 98.2
1tue_A212 Replication protein E1; helicase, replication, E1E 98.16
3f8t_A506 Predicted ATPase involved in replication control, 98.08
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 98.07
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 98.06
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 98.05
2qgz_A308 Helicase loader, putative primosome component; str 97.96
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 97.94
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 97.93
1tue_A212 Replication protein E1; helicase, replication, E1E 97.88
1zc1_A208 Ubiquitin fusion degradation protein 1; UFD1, doub 97.87
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 97.75
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 97.67
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 97.64
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 97.54
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.5
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 97.49
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.45
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.44
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.43
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.37
1xp8_A366 RECA protein, recombinase A; recombination, radior 97.37
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.35
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.34
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.31
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.19
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.16
1u94_A356 RECA protein, recombinase A; homologous recombinat 97.14
1xp8_A366 RECA protein, recombinase A; recombination, radior 97.1
2z43_A324 DNA repair and recombination protein RADA; archaea 97.09
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 97.07
2z43_A324 DNA repair and recombination protein RADA; archaea 97.06
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 97.03
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 97.01
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 96.98
1u94_A356 RECA protein, recombinase A; homologous recombinat 96.97
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 96.95
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 96.95
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 96.92
3upu_A 459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.91
4a74_A231 DNA repair and recombination protein RADA; hydrola 96.9
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 96.89
3io5_A333 Recombination and repair protein; storage dimer, i 96.88
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 96.87
4a74_A231 DNA repair and recombination protein RADA; hydrola 96.85
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 96.84
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 96.8
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 96.79
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 96.77
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 96.75
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 96.71
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 96.66
3io5_A333 Recombination and repair protein; storage dimer, i 96.66
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.66
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 96.65
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 96.65
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 96.64
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 96.61
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 96.61
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.58
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 96.54
1vma_A306 Cell division protein FTSY; TM0570, structural gen 96.53
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 96.52
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.46
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.45
2eyu_A261 Twitching motility protein PILT; pilus retraction 96.44
3e1s_A 574 Exodeoxyribonuclease V, subunit RECD; alpha and be 96.42
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 96.42
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 96.42
2eyu_A261 Twitching motility protein PILT; pilus retraction 96.39
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 96.38
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.36
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 96.35
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.35
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 96.35
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.35
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 96.32
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 96.32
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 96.32
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.32
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.29
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 96.27
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.26
2r6a_A454 DNAB helicase, replicative helicase; replication, 96.25
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.23
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.21
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.2
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.2
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.2
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 96.19
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.18
2ewv_A372 Twitching motility protein PILT; pilus retraction 96.15
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 96.14
1vma_A306 Cell division protein FTSY; TM0570, structural gen 96.14
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 96.13
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 96.12
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.09
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 96.07
1via_A175 Shikimate kinase; structural genomics, transferase 96.03
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 96.01
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.0
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 95.99
1kag_A173 SKI, shikimate kinase I; transferase, structural g 95.98
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 95.98
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 95.95
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 95.94
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 95.94
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 95.93
2r6a_A454 DNAB helicase, replicative helicase; replication, 95.93
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 95.93
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 95.92
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 95.92
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 95.92
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 95.91
2jv2_A83 Putative uncharacterized protein PH1500; AAA ATPas 95.91
2ewv_A372 Twitching motility protein PILT; pilus retraction 95.89
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 95.88
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 95.85
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 95.8
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 95.77
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 95.75
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 95.73
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 95.73
1kag_A173 SKI, shikimate kinase I; transferase, structural g 95.71
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 95.71
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 95.71
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 95.7
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 95.69
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 95.68
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 95.68
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 95.67
1via_A175 Shikimate kinase; structural genomics, transferase 95.67
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 95.63
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 95.63
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 95.61
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 95.6
2vli_A183 Antibiotic resistance protein; transferase, tunica 95.6
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 95.59
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 95.58
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 95.58
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 95.57
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 95.57
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 95.56
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 95.54
1w36_D 608 RECD, exodeoxyribonuclease V alpha chain; recombin 95.54
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 95.54
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 95.54
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 95.54
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 95.53
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 95.53
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 95.52
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 95.51
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 95.51
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 95.5
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 95.49
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 95.49
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 95.47
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 95.46
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 95.46
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 95.46
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 95.45
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 95.44
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 95.42
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 95.41
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 95.4
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 95.39
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 95.39
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 95.38
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 95.38
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 95.37
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 95.36
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 95.36
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 95.34
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 95.32
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 95.3
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 95.3
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 95.3
3tlx_A243 Adenylate kinase 2; structural genomics, structura 95.29
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 95.28
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 95.28
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 95.26
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 95.25
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 95.24
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 95.23
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 95.22
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 95.22
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 95.22
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 95.18
3tlx_A243 Adenylate kinase 2; structural genomics, structura 95.17
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 95.15
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 95.15
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 95.13
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 95.13
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 95.13
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 95.12
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 95.09
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 95.08
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 95.06
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 95.06
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 95.03
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 95.03
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 95.02
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 95.01
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 94.99
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 94.99
2vli_A183 Antibiotic resistance protein; transferase, tunica 94.99
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 94.98
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 94.97
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 94.94
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 94.94
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 94.93
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 94.92
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 94.92
3b6e_A216 Interferon-induced helicase C domain-containing P; 94.92
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 94.87
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 94.83
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 94.83
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 94.8
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 94.79
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 94.78
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 94.76
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 94.75
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 94.72
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 94.72
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 94.7
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 94.69
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 94.64
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 94.62
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 94.61
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 94.6
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 94.6
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 94.59
2j37_W 504 Signal recognition particle 54 kDa protein (SRP54) 94.58
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 94.56
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 94.56
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 94.54
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 94.51
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 94.51
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 94.51
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 94.49
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 94.48
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 94.48
3r20_A233 Cytidylate kinase; structural genomics, seattle st 94.46
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 94.46
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 94.43
2oap_1511 GSPE-2, type II secretion system protein; hexameri 94.4
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 94.38
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 94.38
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 94.34
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 94.34
1p9r_A418 General secretion pathway protein E; bacterial typ 94.32
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 94.31
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 94.31
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 94.3
2xxa_A433 Signal recognition particle protein; protein trans 94.3
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 94.3
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 94.28
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 94.22
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 94.22
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 94.22
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 94.19
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 94.17
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 94.16
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 94.15
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 94.13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 94.12
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 94.11
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 94.11
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 94.11
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 94.11
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 94.1
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 94.07
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 94.06
3r20_A233 Cytidylate kinase; structural genomics, seattle st 94.06
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 94.05
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 94.04
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 94.04
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 94.04
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 94.04
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 94.03
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 94.02
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 94.01
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 94.01
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 94.0
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 93.99
2xxa_A433 Signal recognition particle protein; protein trans 93.98
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 93.96
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 93.94
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 93.92
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 93.91
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 93.9
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 93.87
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 93.86
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 93.85
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 93.85
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 93.85
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 93.84
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 93.82
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 93.79
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 93.78
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 93.77
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 93.74
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 93.73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-86  Score=823.17  Aligned_cols=546  Identities=34%  Similarity=0.541  Sum_probs=427.5

Q ss_pred             cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162          550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC  629 (1134)
Q Consensus       550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~  629 (1134)
                      ...+++++|++.++++|.+.+...+.  .+++|..+|..+|+|||||||||||||+|||++|++++      .+++.++|
T Consensus       200 ~v~~~dIgGl~~~~~~l~e~v~~pl~--~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~  271 (806)
T 3cf2_A          200 EVGYDDIGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING  271 (806)
T ss_dssp             SCCGGGCCSCCTTHHHHHHHHHHHHH--CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEH
T ss_pred             CCChhhhcCHHHHHHHHHHHHHHHcc--CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEh
Confidence            35688999999999999998765332  46789999999999999999999999999999999988      89999999


Q ss_pred             ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162          630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP  709 (1134)
Q Consensus       630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~  709 (1134)
                      .++.+.+.+..++.++.+|+.|.+++|+||||||+|.|++++....+    .....+...|+..|+.+....       +
T Consensus       272 ~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~----~~~~riv~~LL~~mdg~~~~~-------~  340 (806)
T 3cf2_A          272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG----EVERRIVSQLLTLMDGLKQRA-------H  340 (806)
T ss_dssp             HHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC----TTHHHHHHHHHTHHHHCCGGG-------C
T ss_pred             HHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC----hHHHHHHHHHHHHHhcccccC-------C
Confidence            99999999999999999999999999999999999999976544332    233577888889999876532       5


Q ss_pred             EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162          710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV  789 (1134)
Q Consensus       710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~  789 (1134)
                      |+||++||+++.||++|+|+|||+++|+++.|+.++|.+||+.++.+..+. .+..+..+|..|+||+++||..+|++|+
T Consensus       341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~  419 (806)
T 3cf2_A          341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA  419 (806)
T ss_dssp             EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988765432 3345889999999999999999999999


Q ss_pred             HHHhcccccCCC------ccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcC
Q 001162          790 HAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP  863 (1134)
Q Consensus       790 ~~a~~r~~~~~~------~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~  863 (1134)
                      ..++.|......      .........++.+||..|+..+.|+.+++.....+   .+.|++++|++++++.|.+.+.+|
T Consensus       420 ~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p---~v~w~diggl~~~k~~l~e~v~~p  496 (806)
T 3cf2_A          420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGLEDVKRELQELVQYP  496 (806)
T ss_dssp             HHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCC---CCCSTTCCSCHHHHHHHTTTTTTT
T ss_pred             HHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCC---CCCHHHhCCHHHHHHHHHHHHHhh
Confidence            999877542110      01111235688999999999999999998766554   589999999999999999999999


Q ss_pred             CCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEE
Q 001162          864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF  943 (1134)
Q Consensus       864 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfi  943 (1134)
                      +++++.|.+.+.++++|+|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++.+|+.|+..+||||||
T Consensus       497 ~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iifi  576 (806)
T 3cf2_A          497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF  576 (806)
T ss_dssp             TTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEEC
T ss_pred             hhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCC---CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHH
Q 001162          944 DEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 1020 (1134)
Q Consensus       944 DEid~l~~~r~~---~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~I 1020 (1134)
                      ||||+++++|+.   +..+..+|++++||++||++...++|+||||||+|+.||+|++||||||+.|+|++|+.++|.+|
T Consensus       577 DEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~i  656 (806)
T 3cf2_A          577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI  656 (806)
T ss_dssp             SCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHT
T ss_pred             hhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHH
Confidence            999999999864   34567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC--------------CCCCCcccccHHHH
Q 001162         1021 LKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--------------NEPGKMPVITDALL 1086 (1134)
Q Consensus      1021 l~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~--------------~~~~~~~~it~e~l 1086 (1134)
                      |+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++.+.....              ......+.|+.+||
T Consensus       657 l~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df  736 (806)
T 3cf2_A          657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF  736 (806)
T ss_dssp             TTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CC
T ss_pred             HHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHH
Confidence            9999999999999999999999999999999999999999999998753211              11223467999999


Q ss_pred             HHHHhhcCCCCcHHHHHHHHHHHHHhhcccch
Q 001162         1087 KSIASKARPSVSEAEKLRLYSIYGQFLDSKKS 1118 (1134)
Q Consensus      1087 ~~al~~~~ps~~~~~~~~~~~~~~~f~~~r~~ 1118 (1134)
                      ..|++.++||++++++++|++|.++|..+|..
T Consensus       737 ~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~  768 (806)
T 3cf2_A          737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF  768 (806)
T ss_dssp             TTTC---------------CCCC---------
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc
Confidence            99999999999999999999999999998854
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Back     alignment and structure
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1134
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 2e-82
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 3e-24
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 2e-80
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 7e-26
d1r7ra3265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 2e-64
d1r7ra3265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 9e-15
d1e32a2258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 3e-52
d1e32a2258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 3e-16
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 6e-48
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 5e-11
d1wlfa180 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 2e-30
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 5e-30
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 1e-08
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 2e-27
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 6e-07
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 5e-26
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 1e-09
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 9e-20
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 9e-08
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 2e-16
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 6e-07
d1ofha_309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 2e-16
d1ofha_309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 8e-08
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 2e-09
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 3e-06
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 3e-08
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 3e-04
d1njfa_239 c.37.1.20 (A:) delta prime subunit of DNA polymera 5e-07
d1a5ta2207 c.37.1.20 (A:1-207) delta prime subunit of DNA pol 3e-06
d2fnaa2283 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo 3e-06
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 5e-05
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 8e-05
d1qvra2387 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus 3e-04
d2i3ba1189 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 5e-04
d1g8pa_333 c.37.1.20 (A:) ATPase subunit of magnesium chelata 5e-04
d2bdta1176 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B 7e-04
d1yj5a2172 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p 9e-04
d1ckea_225 c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 0.001
d1lw7a2192 c.37.1.1 (A:220-411) Transcriptional regulator Nad 0.001
d2gnoa2198 c.37.1.20 (A:11-208) gamma subunit of DNA polymera 0.001
d1qhxa_178 c.37.1.3 (A:) Chloramphenicol phosphotransferase { 0.001
d1r6bx2268 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A 0.001
d1sxje2252 c.37.1.20 (E:4-255) Replication factor C5 {Baker's 0.001
d1sxjd2237 c.37.1.20 (D:26-262) Replication factor C2 {Baker' 0.001
d1rkba_173 c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien 0.002
d1ly1a_152 c.37.1.1 (A:) Polynucleotide kinase, kinase domain 0.003
d1kaga_169 c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia 0.003
d1khta_190 c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco 0.003
d1zp6a1176 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { 0.003
d1y63a_174 c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma 0.003
d1g41a_443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 0.003
d1g41a_ 443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 0.004
d1m8pa3183 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d 0.003
d1zaka1189 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai 0.003
d1q3ta_223 c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae 0.004
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  266 bits (682), Expect = 2e-82
 Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 4/226 (1%)

Query: 843  WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
            + DV G  + +  + E++E   + P+ F +   ++   VL+ GPPG GKT +  A A   
Sbjct: 11   FADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69

Query: 903  SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 959
             + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G   
Sbjct: 70   KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129

Query: 960  VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 1019
              ++ +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  
Sbjct: 130  EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189

Query: 1020 ILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 1065
            ILKV  R++PLA D+D   IA  T GFSGADL  L+++A L A   
Sbjct: 190  ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1wlfa1 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 1 (PEX-1), domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225 Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190 Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189 Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1134
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 100.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 100.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 100.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 100.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.98
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.96
d1wlfa180 Peroxisome biogenesis factor 1 (PEX-1), domain 2 { 99.96
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.92
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.89
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.86
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.83
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.79
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.77
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.75
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.72
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.69
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.68
d1wlfa287 Peroxisome biogenesis factor 1 (PEX-1), N-terminal 99.67
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.67
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.66
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.66
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.64
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.62
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.61
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.6
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.59
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.58
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.57
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.56
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.54
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.53
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.53
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.52
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.51
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.49
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.45
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.45
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.45
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.43
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.41
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.41
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.38
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.38
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.37
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.36
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.34
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.32
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.32
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.31
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.31
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.27
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.22
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.21
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.21
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.18
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.18
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.0
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 98.94
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 98.92
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 98.84
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 98.81
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 98.77
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 98.67
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.65
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.39
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.07
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 97.94
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 97.83
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 97.81
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.51
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.47
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.33
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.22
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.2
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.12
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 97.11
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.05
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.02
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.01
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.01
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 96.97
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 96.95
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 96.88
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 96.88
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 96.86
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 96.82
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 96.81
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 96.8
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 96.78
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 96.78
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 96.75
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 96.75
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 96.75
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 96.74
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 96.74
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 96.72
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.69
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 96.69
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 96.67
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 96.66
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.65
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 96.64
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 96.64
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 96.62
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 96.61
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.61
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 96.61
d2qy9a2211 GTPase domain of the signal recognition particle r 96.6
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.59
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 96.54
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.51
d2qy9a2211 GTPase domain of the signal recognition particle r 96.5
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.49
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 96.47
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.46
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 96.44
d1okkd2207 GTPase domain of the signal recognition particle r 96.43
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.43
d1okkd2207 GTPase domain of the signal recognition particle r 96.42
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.42
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 96.42
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.41
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.4
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.39
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 96.37
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 96.36
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 96.36
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.34
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.33
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.31
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.3
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 96.29
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.29
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.29
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.26
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 96.25
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.23
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 96.23
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.23
d2awna2232 Maltose transport protein MalK, N-terminal domain 96.22
d1tuea_205 Replication protein E1 helicase domain {Human papi 96.22
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.18
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 96.18
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.16
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 96.16
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.16
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.15
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 96.14
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 96.14
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 96.13
d1g2912240 Maltose transport protein MalK, N-terminal domain 96.13
d1vmaa2213 GTPase domain of the signal recognition particle r 96.11
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 96.1
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.09
d1vmaa2213 GTPase domain of the signal recognition particle r 96.08
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 96.07
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 96.07
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 96.03
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.02
d1g2912240 Maltose transport protein MalK, N-terminal domain 96.01
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 95.98
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 95.96
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 95.95
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 95.94
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 95.94
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 95.89
d2awna2232 Maltose transport protein MalK, N-terminal domain 95.88
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 95.87
d2hyda1255 Putative multidrug export ATP-binding/permease pro 95.83
d1ls1a2207 GTPase domain of the signal sequence recognition p 95.82
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 95.82
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 95.81
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 95.73
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 95.68
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 95.65
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 95.64
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 95.62
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 95.6
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 95.6
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 95.52
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 95.48
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 95.46
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 95.45
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 95.4
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 95.38
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 95.37
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 95.37
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.36
d2hyda1255 Putative multidrug export ATP-binding/permease pro 95.32
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 95.27
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 95.25
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 95.24
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 95.18
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 95.15
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.12
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 95.06
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 95.01
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 94.99
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 94.98
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 94.89
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 94.83
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 94.78
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 94.61
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 94.55
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 94.53
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 94.52
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 94.5
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 94.39
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 94.37
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 94.3
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 94.13
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 94.1
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 94.09
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 93.95
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 93.9
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 93.87
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 93.82
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 93.78
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 93.76
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 93.75
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 93.58
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 93.57
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 93.42
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 93.34
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 93.25
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 93.22
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 93.22
d1tuea_205 Replication protein E1 helicase domain {Human papi 93.2
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 93.14
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 93.12
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 92.92
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 92.86
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 92.86
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 92.79
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 92.71
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 92.62
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 92.59
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 92.52
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 92.47
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 92.43
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 92.3
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 92.26
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 92.16
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 92.07
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 92.07
d1cz5a294 C-terminal domain of VAT-N, VAT-Nc {Archaeon Therm 92.01
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 91.98
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 91.97
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 91.87
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 91.85
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 91.72
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 91.7
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 91.7
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 91.7
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 91.69
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 91.6
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 91.42
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 91.4
d2fh5b1207 Signal recognition particle receptor beta-subunit 91.4
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 91.39
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 91.12
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 90.84
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 90.69
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 90.59
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 90.56
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 90.48
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 90.47
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 90.43
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 90.4
d1nrjb_209 Signal recognition particle receptor beta-subunit 90.33
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 90.31
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 90.28
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 90.15
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 90.1
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 90.03
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 90.03
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 90.0
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 89.95
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 89.94
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 89.89
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 89.88
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 89.87
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 89.86
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 89.69
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 89.67
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 89.63
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 89.56
d2fh5b1207 Signal recognition particle receptor beta-subunit 89.42
d1nrjb_209 Signal recognition particle receptor beta-subunit 89.4
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 89.26
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 89.02
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 88.81
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 88.78
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 88.73
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 88.63
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 88.61
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 88.58
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 88.54
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 88.49
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 88.27
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 88.24
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 88.22
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 88.13
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 87.93
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 87.87
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 87.81
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 87.78
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 87.72
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 87.65
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 87.6
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 87.59
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.56
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 87.39
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 87.38
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.36
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.26
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 87.15
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 86.99
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 86.99
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 86.97
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 86.89
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 86.88
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 86.82
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 86.56
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 86.49
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 86.37
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 86.37
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 86.36
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 86.33
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 86.3
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 86.07
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 86.0
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 85.97
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 85.96
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 85.95
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 85.87
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 85.85
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 85.8
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 85.79
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 85.77
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 85.77
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 85.6
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 85.49
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 85.44
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 85.37
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 85.36
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 85.32
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 85.31
d1e32a186 Membrane fusion ATPase p97 N-terminal domain , P97 85.3
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 85.22
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 85.13
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 85.08
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 85.06
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 84.97
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 84.89
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 84.88
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 84.82
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 84.72
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 84.64
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 84.62
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 84.57
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 84.52
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 84.49
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 84.36
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 84.34
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 84.33
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 84.26
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 84.24
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 84.13
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 84.04
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 84.0
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 83.99
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 83.94
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 83.86
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 83.71
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 83.67
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 83.65
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 83.64
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 83.64
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 83.6
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 83.5
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 83.48
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 83.32
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 83.3
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 83.0
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 82.97
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 82.91
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 82.87
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 82.8
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 82.62
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 82.55
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 82.53
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 82.5
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 82.4
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 82.39
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 82.3
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 82.29
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 82.17
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 82.08
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 82.02
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 81.86
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 81.86
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 81.8
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 81.57
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 81.55
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 81.49
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 81.47
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 81.45
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 81.44
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 81.29
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 81.17
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 81.13
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 81.12
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 81.0
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 80.79
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 80.76
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 80.74
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 80.7
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 80.68
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 80.49
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 80.48
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 80.45
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 80.37
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 80.18
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-42  Score=377.43  Aligned_cols=243  Identities=37%  Similarity=0.654  Sum_probs=220.8

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162          839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY  918 (1134)
Q Consensus       839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~  918 (1134)
                      ..++|+||+|++++++.|.+.+.+ +++++.|.+.+.++++++|||||||||||++|+++|++++.+++.++++++.++|
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~   85 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF   85 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred             CCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcc
Confidence            458999999999999999998875 6788899999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC---cchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162          919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA  995 (1134)
Q Consensus       919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~---~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~  995 (1134)
                      +|+++..++.+|+.|+..+||||||||+|++++.|+....   ....+++++|+..||++...++|+||||||+|+.||+
T Consensus        86 ~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~  165 (256)
T d1lv7a_          86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP  165 (256)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred             hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCH
Confidence            9999999999999999999999999999999988765432   3456789999999999988889999999999999999


Q ss_pred             hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162          996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus       996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
                      +++||||||+.|+|++|+.++|.+||+.++++.++..++++..|++.|+||+|+||.++|++|++.|+++          
T Consensus       166 al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~----------  235 (256)
T d1lv7a_         166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----------  235 (256)
T ss_dssp             GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred             hHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----------
Confidence            9999999999999999999999999999999999989999999999999999999999999999988753          


Q ss_pred             CCcccccHHHHHHHHhhc
Q 001162         1076 GKMPVITDALLKSIASKA 1093 (1134)
Q Consensus      1076 ~~~~~it~e~l~~al~~~ 1093 (1134)
                       .+..|+.+||.+|++++
T Consensus       236 -~~~~i~~~d~~~Al~rv  252 (256)
T d1lv7a_         236 -NKRVVSMVEFEKAKDKI  252 (256)
T ss_dssp             -TCSSBCHHHHHHHHHHH
T ss_pred             -CCCccCHHHHHHHHHHH
Confidence             23568999999999765
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wlfa1 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 1 (PEX-1), domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wlfa2 b.52.2.3 (A:13-99) Peroxisome biogenesis factor 1 (PEX-1), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure