Citrus Sinensis ID: 001298

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100-----
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR
ccHHEEHHHHEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHHccccccccccEEEEEcccccccEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEccEEEEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEcccHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEEEcccccccccHHHccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEcccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccEEEHHHHcccccHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHccccccEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHcccccEEcccccHHHHHHHHHHHccccccccccccc
cHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEEEEEccccccccEEEEEEccccEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHccccccccEcccccEEEEEEEEcccccHHHHHHcccccccHHHHcEEHEHcHHHHHHHHHHHcccccccccHHHHHHHccccEEccccccccEEcccccccEEEEcccccccccccHHHcccccccccccccEEEEEEcccccccEEEccccHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccccccHHHHHHcccHHccccHEEEccccHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHccccHEHcccccHHHHHHHHHHHHccccccccHHHHHHHHcccccccEEEEEcccccHHHHHcccccccEEEccccccHHHccccccEEEEEEcccccHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcHHccccccccEEEEEccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccc
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRynkpatqaEQIQLYEVMRDVTWAMFASRKALNAITINYKngfvqafhrdhrsnntfyiysdlsnysigtsgpydsnlissregwndqsikgnisaiwyrepldpitgekigkaspippddliniagisqvpdgVASWHVAVSKftnspllsaalpvwdpttsnksIVAVVGVTTALSSVGQLMKELVEVHSghiyltsqegyllatstnaplltnsstgpnlvkavdsdnpviQMGAQWLqseygskvppghvihvqnaklghkqYYMDTFFlnlkrlpivgviiipreyimgkADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIlksddqltnEQYSTVCQIKKSSYALLRLLNRILDLskvesgkmelenTEFDLQKELEELVDMFSVQcsnhnvetvldlsdniprnvrgdpgrVFQIFSNLINnsikftssghiiirgwcenldtskntaefptdrkKFGRAFRTKLKQQANNAMNFREDNKLALCfevddtgcgidqskWETVFESfeqgdpsttrkhggtglGLSIVRTLVNKMGgeikvvkknspgTLMQLYLLLGasseskqiydadfpnTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELldpispvssngfdapyssreplKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNhqttspiktelsregqnivvtkplykgKMIQLLETAVRGKILGMqnrissttnegngeeiRGSIanysaskhqkfrkcsfefssicpgesssrREDLIHTMFRErhqigssrrdqpcsssnsssnQKRILEGLRILLAEDTPLIQIVACKILEKvgatvsvvpDGLQAVEALNRMLAAESSRRrsllqgspsetpdtprfdlilmdcqmpkmdgyEATIEIRKSesehgarnipIVALTAHamnadekkclgvgmnayltkpidserMVSTILRLtknmpseatgttr
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVEtvldlsdniprnvRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENldtskntaefptdrkkFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEqgdpsttrkhggtglGLSIVRTLVNKMGGEIkvvkknspgTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTtspiktelsregqnivvtkplykgkmIQLLETAVRGKILGMQNRissttnegngeeIRGSIANYSASKHQKFRKCSFefssicpgesssrREDLIHTMFRerhqigssrrdqpcsssnsssnqkRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESsrrrsllqgspsetpdtprfdLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYltkpidsermVSTIlrltknmpseatgttr
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASvcilvigcicililTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAllrllnrildlSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIAlldlssdlWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCsssnsssnQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR
*LAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLT*******LVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHL**************QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT*****************************MNFREDNKLALCFEVDDTGCGIDQSKWETVFESF************GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPIS*******************EMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQ********************************CSFEF**********************************************ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN**************************FDLILMDCQMPKMDGYEATIEI********ARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR**************
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPY***LISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLT**S*****V*AVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKA**SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD************KKFGRAF***************EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL******************VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSR*********************RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL***************
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF************GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRER*********************KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA*****************PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM*********
MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN*******************************AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRR***************ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM**********************PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN**********
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SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGxxxxxxxxxxxxxxxxxxxxxFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1105 2.2.26 [Sep-21-2011]
Q9SXL41207 Histidine kinase 1 OS=Ara yes no 0.965 0.884 0.603 0.0
O222671122 Histidine kinase CKI1 OS= no no 0.439 0.433 0.278 9e-48
Q9C5U11036 Histidine kinase 3 OS=Ara no no 0.261 0.278 0.370 4e-44
Q54YZ92062 Hybrid signal transductio yes no 0.219 0.117 0.363 7e-42
Q54U87 2150 Hybrid signal transductio no no 0.238 0.122 0.353 1e-41
Q9C5U01080 Histidine kinase 4 OS=Ara no no 0.300 0.307 0.304 4e-41
O140022310 Peroxide stress-activated yes no 0.204 0.097 0.351 1e-38
P0AEC5918 Signal transduction histi N/A no 0.206 0.248 0.353 2e-38
P0AEC6918 Signal transduction histi yes no 0.206 0.248 0.353 2e-38
P0AEC7918 Signal transduction histi N/A no 0.206 0.248 0.353 2e-38
>sp|Q9SXL4|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2 Back     alignment and function desciption
 Score = 1343 bits (3476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1138 (60%), Positives = 851/1138 (74%), Gaps = 71/1138 (6%)

Query: 1    MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
            MLAILIGLLTVLTWHFTR+YT +SL TLAYGLRYELLQRP+LRMW+++N+T+E+T AQVK
Sbjct: 87   MLAILIGLLTVLTWHFTRIYTKQSLQTLAYGLRYELLQRPVLRMWSVLNTTSELTTAQVK 146

Query: 61   LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
            LSEYVIK+Y+KP TQ E +++Y+ M+DVTWA+FAS KALNAITINY+NGFVQAFHRD  S
Sbjct: 147  LSEYVIKKYDKPTTQEELVEMYQAMKDVTWALFASAKALNAITINYRNGFVQAFHRDPAS 206

Query: 121  NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
            ++TFYI+SDL NYSI  +GP D +      GWN++SI GN+SAIWY++ LDP+TGE +GK
Sbjct: 207  SSTFYIFSDLKNYSISGTGPEDVS------GWNNKSIHGNMSAIWYQQQLDPVTGENLGK 260

Query: 181  ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
               IPPDDLINIAGISQVPDG ASWHV VSK+ +SPLLSAALPV+D   SNKSIVAVVGV
Sbjct: 261  PLKIPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFD--ASNKSIVAVVGV 318

Query: 241  TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
            TTAL SVGQLM++LVEVH GHIYLTSQEGYLLATST+ PLL N+S GP L+KA DS+  V
Sbjct: 319  TTALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLKNTSNGPQLMKATDSEEWV 378

Query: 301  IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
            I+ GAQWL+  YGSK P  HV+H +N KLG ++YY+D+F+LNLKRLPIVGV+IIPR++IM
Sbjct: 379  IKSGAQWLEKTYGSKRP--HVVHAENVKLGDQRYYIDSFYLNLKRLPIVGVVIIPRKFIM 436

Query: 361  GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
            GK DERA+KTLIILISASVCI  IGC+CILILTNGVSKEMKLRAELI  LDARR+AEAS+
Sbjct: 437  GKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASS 496

Query: 421  NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
            NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L+NEQY+TV QI+K S ALLRLLN IL
Sbjct: 497  NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNIL 556

Query: 481  DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
            DLSKVESGK+ LE  EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P  VRGD  R+
Sbjct: 557  DLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARL 616

Query: 541  FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
             QIF+NLI+NSIKFT++GHII+RGWCEN+++  +      DR+K     +TK  Q  N+ 
Sbjct: 617  VQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMKTKQVQHRNHL 676

Query: 601  M-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
              + +  NK+ L FEVDDTGCGID SKW++VFESFEQ DPSTTR HGGTGLGL IVR LV
Sbjct: 677  QKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLV 736

Query: 660  NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN--TVVVLATVGSMERMIIS 717
            NKMGGEIKVV+KN  GTLM+LYL+L       Q    DF     VV+L+  GS  RMI S
Sbjct: 737  NKMGGEIKVVQKNGLGTLMRLYLILSTPDTVDQNIQPDFSKYGLVVMLSMYGSTARMITS 796

Query: 718  QWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777
            +WLRK  ++T+E S+W+ LTQI+R+LL+  S    N FD+ ++  +PL+AE++NI  + +
Sbjct: 797  KWLRKHGIATVEASDWNELTQIIRDLLETGS--RDNSFDSQHNISDPLRAELSNIVEIKN 854

Query: 778  PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVV 837
            PV+V+V+DI +LDL++++W+EQLN LD F  KA FAW++ H T++ +KTEL R+G  ++V
Sbjct: 855  PVFVIVVDIGVLDLTTNIWKEQLNYLDRFSNKAKFAWLLKHDTSNTVKTELRRKGHVMMV 914

Query: 838  TKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 897
             KPLYK KMIQ+LE  ++ +  G+ N +    N GNG +          +   +F  CS 
Sbjct: 915  NKPLYKAKMIQILEAVIKNRKRGLCNDLR---NRGNGSDESHDCLEIDPT---QFDTCSS 968

Query: 898  EFSSICPGE---SSSRREDLIHTMFRERHQI-GSSRRDQPCSSSNSSSN----------- 942
            + SS   GE     S +   +H+   + + I  ++  D   S+S +  N           
Sbjct: 969  DDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSASMTQKNPEEEDWKDRLY 1028

Query: 943  --------QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN-RML 993
                     ++ LEG+RILLAEDTP++Q VA  +LEK+GATV+ V DG QAV++LN + +
Sbjct: 1029 SGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSI 1088

Query: 994  AAE-----------------SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
             A+                 ++R  SL   SP        +DLILMDCQMPKMDGYEAT 
Sbjct: 1089 NAQAPTEEHKSFEEETANKVTTRETSLRNSSP--------YDLILMDCQMPKMDGYEATK 1140

Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
             IR++E      +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1141 AIRRAEI-GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSLTK 1197
Functions as an osmosensor histidine kinase that detects water stress and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Positive regulator of drought and salt stress responses, and abscisic acid (ABA) signaling. Confers drought tolerance, probably by regulating levels of ABA accumulation. Plays a redundant role in regulating plant growth and development. Required for the regulation of desiccation processes during seed formation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1 Back     alignment and function description
>sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2 Back     alignment and function description
>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium discoideum GN=dhkA PE=1 SV=1 Back     alignment and function description
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1 Back     alignment and function description
>sp|O14002|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak2 PE=3 SV=1 Back     alignment and function description
>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia coli (strain K12) GN=barA PE=1 SV=1 Back     alignment and function description
>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA PE=1 SV=1 Back     alignment and function description
>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O157:H7 GN=barA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1105
255577536 1206 histidine kinase 1 plant, putative [Rici 0.976 0.894 0.664 0.0
2977349881168 unnamed protein product [Vitis vinifera] 0.974 0.922 0.666 0.0
224133676 1258 histidine kinase osmosensor protein [Pop 0.981 0.862 0.634 0.0
225431092 1235 PREDICTED: histidine kinase 1-like [Viti 0.987 0.883 0.644 0.0
2240713271149 histidine kinase osmosensor protein [Pop 0.972 0.935 0.663 0.0
449495060 1222 PREDICTED: histidine kinase 1-like [Cucu 0.977 0.883 0.627 0.0
449456825 1221 PREDICTED: histidine kinase 1-like [Cucu 0.977 0.884 0.627 0.0
3565021021193 PREDICTED: histidine kinase 1-like [Glyc 0.985 0.912 0.623 0.0
3565611301197 PREDICTED: histidine kinase 1-like [Glyc 0.980 0.905 0.617 0.0
357483831 1218 Histidine kinase osmosensor protein [Med 0.971 0.881 0.610 0.0
>gi|255577536|ref|XP_002529646.1| histidine kinase 1 plant, putative [Ricinus communis] gi|223530872|gb|EEF32733.1| histidine kinase 1 plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1481 bits (3833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 752/1132 (66%), Positives = 882/1132 (77%), Gaps = 53/1132 (4%)

Query: 1    MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
            MLAILIGLLT+LTWHFT+ YT +SLDTLA GLRYELLQRP+LRMWNI+NST+EIT AQVK
Sbjct: 87   MLAILIGLLTILTWHFTKSYTKRSLDTLASGLRYELLQRPILRMWNILNSTSEITTAQVK 146

Query: 61   LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
            LSEYVIKRY+  ATQAEQ++LYEVM+DVTWAMFASRKALNAITI Y+NGFVQAFHRDHRS
Sbjct: 147  LSEYVIKRYSNSATQAEQVELYEVMKDVTWAMFASRKALNAITITYRNGFVQAFHRDHRS 206

Query: 121  NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
            NNTFYIYS+L NYSI  + P D+N++SSR+GWNDQSI GN+SAIWYREPLDP TG KIGK
Sbjct: 207  NNTFYIYSNLVNYSISAAEPSDANMLSSRQGWNDQSIHGNLSAIWYREPLDPTTGNKIGK 266

Query: 181  ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
            AS I PDDLINIAG SQVPDG ASWHVAVSK+T+SPLLSAALPVWD   SNKSIVAVVGV
Sbjct: 267  ASEIQPDDLINIAGFSQVPDGAASWHVAVSKYTDSPLLSAALPVWD--ASNKSIVAVVGV 324

Query: 241  TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
            TTAL SVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLL NSS GP L+ AVDS++ +
Sbjct: 325  TTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLRNSSRGPKLMMAVDSEDDI 384

Query: 301  IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
            I+MGAQWL+S YG+K P  H +H +NA+LG++QYY+D+FFLNLKRLPIVGVIIIPR YIM
Sbjct: 385  IRMGAQWLESRYGNKFP--HAVHEENAELGNQQYYIDSFFLNLKRLPIVGVIIIPRRYIM 442

Query: 361  GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
            GK DERA+KTL+ILISASVCILVIGC+CILILTNGVSKEMKLRAELISHLDARR+AEASN
Sbjct: 443  GKVDERAFKTLVILISASVCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASN 502

Query: 421  NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
            NYKSQFLANMSHELRTPMAA+IGLL+IL SDD LTNEQY+TV QI+K S ALLRLLN IL
Sbjct: 503  NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNIL 562

Query: 481  DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
            DLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE VLDLSD +P+ VRGD  RV
Sbjct: 563  DLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEMPKLVRGDSARV 622

Query: 541  FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
             QIF+NLI+NSIKFT+SGHI++RGWCEN+ TS +TA+ P ++KK   A +TKL+QQ N+ 
Sbjct: 623  VQIFANLISNSIKFTTSGHIVLRGWCENISTSNDTAKSPLEQKKLRCALKTKLRQQGNHM 682

Query: 601  MNF-REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
                +++NK+ L FEVDDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 683  KKASKKENKVILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 742

Query: 660  NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADFP--NTVVVLATVGSMERMII 716
            NKMGGEIKVVKKN PGTLM+LYLLL    + ++Q    DF   N VV+LA  GS+ R I+
Sbjct: 743  NKMGGEIKVVKKNGPGTLMRLYLLLRTPRDGTEQHCQIDFARHNVVVLLALYGSIGRGIM 802

Query: 717  SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
            SQWLRK  +STL  SEW+ LTQ+LREL        + GF+A  S  EPL++E+ NI+ + 
Sbjct: 803  SQWLRKNGLSTLRVSEWNELTQVLRELF--YVRRHNKGFEAQCSLNEPLRSEVLNIQDIR 860

Query: 777  DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
            DP++V+V+DI LLDLS+D+W+EQLN LD F  KA FAW++NH T++ IK EL R+G  ++
Sbjct: 861  DPIFVIVVDIGLLDLSTDIWKEQLNFLDKFSSKATFAWMLNHDTSTAIKMELRRKGHILM 920

Query: 837  VTKPLYKGKMIQLLETAVR---GKILGM---------------------------QNRIS 866
            V KPLYK KMIQ+LET ++    K  G                             + ++
Sbjct: 921  VNKPLYKAKMIQILETVIKEQQKKSFGAVRSSSKDDDMHDCLEIDSTQFDNASSEDSDMA 980

Query: 867  STTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIG 926
             T N  N           + S++Q F+KC  E + +                  +R +  
Sbjct: 981  ETGNSNNVSSFHHGSRITNPSQYQTFKKCLVELTDM-------HSRSESSKRSEQRLE-S 1032

Query: 927  SSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAV 986
            S  + Q  S  N S  +++ LEGLRILLAEDTP++Q VA  +LEK+GATV  V DGLQAV
Sbjct: 1033 SCLKGQTSSCLNKSVKEQKALEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAV 1092

Query: 987  EALNRMLAAESSRRRSLLQG----SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
            +ALN  L+   SRR S+ Q     S +E  D P +DLILMDCQMPKMDGYEAT  IRKSE
Sbjct: 1093 DALNCRLSGRESRRESVFQDENNTSQTEMLDPPPYDLILMDCQMPKMDGYEATKAIRKSE 1152

Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
            +  G  +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1153 AGSGL-HIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTK 1203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734988|emb|CBI17350.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133676|ref|XP_002327653.1| histidine kinase osmosensor protein [Populus trichocarpa] gi|222836738|gb|EEE75131.1| histidine kinase osmosensor protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225431092|ref|XP_002265248.1| PREDICTED: histidine kinase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224071327|ref|XP_002303406.1| histidine kinase osmosensor protein [Populus trichocarpa] gi|222840838|gb|EEE78385.1| histidine kinase osmosensor protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449495060|ref|XP_004159723.1| PREDICTED: histidine kinase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456825|ref|XP_004146149.1| PREDICTED: histidine kinase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502102|ref|XP_003519860.1| PREDICTED: histidine kinase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356561130|ref|XP_003548838.1| PREDICTED: histidine kinase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357483831|ref|XP_003612202.1| Histidine kinase osmosensor protein [Medicago truncatula] gi|355513537|gb|AES95160.1| Histidine kinase osmosensor protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1105
TAIR|locus:28278361207 HK1 "histidine kinase 1" [Arab 0.803 0.735 0.620 0.0
TAIR|locus:20619711122 CKI1 "CYTOKININ-INDEPENDENT 1" 0.432 0.426 0.280 1.3e-55
TIGR_CMR|SO_08591765 SO_0859 "sensory box histidine 0.145 0.091 0.384 3.1e-51
ASPGD|ASPL00000740671297 nikA [Emericella nidulans (tax 0.141 0.120 0.333 4.7e-48
DICTYBASE|DDB_G02778832062 dhkJ "histidine kinase J" [Dic 0.142 0.076 0.371 1.6e-45
TIGR_CMR|GSU_23141025 GSU_2314 "sensory box histidin 0.147 0.159 0.329 2.5e-45
UNIPROTKB|Q9KPC0927 VC_2453 "Sensor histidine kina 0.134 0.160 0.424 3.2e-45
TIGR_CMR|VC_2453927 VC_2453 "sensor histidine kina 0.134 0.160 0.424 3.2e-45
TIGR_CMR|SPO_0132739 SPO_0132 "sensor histidine kin 0.148 0.221 0.386 5.2e-44
TIGR_CMR|SO_3457935 SO_3457 "sensor histidine kina 0.137 0.162 0.384 9.8e-44
TAIR|locus:2827836 HK1 "histidine kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2816 (996.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 564/909 (62%), Positives = 690/909 (75%)

Query:     1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
             MLAILIGLLTVLTWHFTR+YT +SL TLAYGLRYELLQRP+LRMW+++N+T+E+T AQVK
Sbjct:    87 MLAILIGLLTVLTWHFTRIYTKQSLQTLAYGLRYELLQRPVLRMWSVLNTTSELTTAQVK 146

Query:    61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
             LSEYVIK+Y+KP TQ E +++Y+ M+DVTWA+FAS KALNAITINY+NGFVQAFHRD  S
Sbjct:   147 LSEYVIKKYDKPTTQEELVEMYQAMKDVTWALFASAKALNAITINYRNGFVQAFHRDPAS 206

Query:   121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
             ++TFYI+SDL NYSI  +GP D   +S   GWN++SI GN+SAIWY++ LDP+TGE +GK
Sbjct:   207 SSTFYIFSDLKNYSISGTGPED---VS---GWNNKSIHGNMSAIWYQQQLDPVTGENLGK 260

Query:   181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
                IPPDDLINIAGISQVPDG ASWHV VSK+ +SPLLSAALPV+D   SNKSIVAVVGV
Sbjct:   261 PLKIPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFD--ASNKSIVAVVGV 318

Query:   241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
             TTAL SVGQLM++LVEVH GHIYLTSQEGYLLATST+ PLL N+S GP L+KA DS+  V
Sbjct:   319 TTALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLKNTSNGPQLMKATDSEEWV 378

Query:   301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
             I+ GAQWL+  YGSK P  HV+H +N KLG ++YY+D+F+LNLKRLPIVGV+IIPR++IM
Sbjct:   379 IKSGAQWLEKTYGSKRP--HVVHAENVKLGDQRYYIDSFYLNLKRLPIVGVVIIPRKFIM 436

Query:   361 GKADERAYKTLIILISASXXXXXXXXXXXXXXTNGVSKEMKLRAELISHLDARRKAEASN 420
             GK DERA+KTLIILISAS              TNGVSKEMKLRAELI  LDARR+AEAS+
Sbjct:   437 GKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASS 496

Query:   421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAXXXXXXXXX 480
             NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L+NEQY+TV QI+K S A         
Sbjct:   497 NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNIL 556

Query:   481 XXSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
               SKVESGK+ LE  EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P  VRGD  R+
Sbjct:   557 DLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARL 616

Query:   541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
              QIF+NLI+NSIKFT++GHII+RGWCEN+++  +      DR+K     +TK  Q  N+ 
Sbjct:   617 VQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMKTKQVQHRNHL 676

Query:   601 M-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
               + +  NK+ L FEVDDTGCGID SKW++VFESFEQ DPSTTR HGGTGLGL IVR LV
Sbjct:   677 QKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLV 736

Query:   660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN--TVVVLATVGSMERMIIS 717
             NKMGGEIKVV+KN  GTLM+LYL+L       Q    DF     VV+L+  GS  RMI S
Sbjct:   737 NKMGGEIKVVQKNGLGTLMRLYLILSTPDTVDQNIQPDFSKYGLVVMLSMYGSTARMITS 796

Query:   718 QWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777
             +WLRK  ++T+E S+W+ LTQI+R+LL+  S    N FD+ ++  +PL+AE++NI  + +
Sbjct:   797 KWLRKHGIATVEASDWNELTQIIRDLLETGS--RDNSFDSQHNISDPLRAELSNIVEIKN 854

Query:   778 PVYVVVIDIAXXXXXXXXWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVV 837
             PV+V+V+DI         W+EQLN LD F  KA FAW++ H T++ +KTEL R+G  ++V
Sbjct:   855 PVFVIVVDIGVLDLTTNIWKEQLNYLDRFSNKAKFAWLLKHDTSNTVKTELRRKGHVMMV 914

Query:   838 TKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 897
              KPLYK KMIQ+LE  ++ +  G+ N +    N GNG +          ++   F  CS 
Sbjct:   915 NKPLYKAKMIQILEAVIKNRKRGLCNDLR---NRGNGSDESHDCLEIDPTQ---FDTCSS 968

Query:   898 EFSSICPGE 906
             + SS   GE
Sbjct:   969 DDSSETSGE 977
GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA
GO:0000156 "phosphorelay response regulator activity" evidence=IEA
GO:0004673 "protein histidine kinase activity" evidence=IEA;ISS
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0005034 "osmosensor activity" evidence=IGI;IMP
GO:0006970 "response to osmotic stress" evidence=IMP
GO:0009927 "histidine phosphotransfer kinase activity" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IEP;IMP
GO:0010431 "seed maturation" evidence=IMP
GO:0010375 "stomatal complex patterning" evidence=IMP
TAIR|locus:2061971 CKI1 "CYTOKININ-INDEPENDENT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0859 SO_0859 "sensory box histidine kinase/response regulator" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
ASPGD|ASPL0000074067 nikA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277883 dhkJ "histidine kinase J" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2314 GSU_2314 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0132 SPO_0132 "sensor histidine kinase/response regulator" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3457 SO_3457 "sensor histidine kinase/response regulator" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SXL4AHK1_ARATH2, ., 7, ., 1, 3, ., 30.60360.96560.8840yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.963
3rd Layer2.7.13.30.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
PRK11107919 PRK11107, PRK11107, hybrid sensory histidine kinas 2e-52
TIGR02956968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 1e-49
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 1e-44
PRK15347921 PRK15347, PRK15347, two component system sensor ki 2e-38
PRK11466914 PRK11466, PRK11466, hybrid sensory histidine kinas 1e-36
PRK11091779 PRK11091, PRK11091, aerobic respiration control se 1e-30
PRK10841924 PRK10841, PRK10841, hybrid sensory kinase in two-c 2e-30
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 6e-28
cd00156113 cd00156, REC, Signal receiver domain; originally t 9e-28
COG0784130 COG0784, CheY, FOG: CheY-like receiver [Signal tra 3e-26
pfam00072111 pfam00072, Response_reg, Response regulator receiv 4e-25
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 4e-24
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 4e-23
PRK099591197 PRK09959, PRK09959, hybrid sensory histidine kinas 5e-22
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 2e-21
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 8e-21
COG5002459 COG5002, VicK, Signal transduction histidine kinas 5e-20
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 7e-20
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 6e-19
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 9e-18
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 2e-17
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 9e-17
PRK10604433 PRK10604, PRK10604, sensor protein RstB; Provision 2e-16
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 5e-16
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 6e-16
COG0745 229 COG0745, OmpR, Response regulators consisting of a 1e-15
PRK10490895 PRK10490, PRK10490, sensor protein KdpD; Provision 7e-15
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 1e-14
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 3e-14
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 1e-13
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 8e-13
PRK15347921 PRK15347, PRK15347, two component system sensor ki 1e-12
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 1e-12
PRK15479221 PRK15479, PRK15479, transcriptional regulatory pro 7e-12
COG2197211 COG2197, CitB, Response regulator containing a Che 1e-11
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 6e-11
PRK09467435 PRK09467, envZ, osmolarity sensor protein; Provisi 6e-11
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 7e-11
COG2204 464 COG2204, AtoC, Response regulator containing CheY- 3e-10
COG3437 360 COG3437, COG3437, Response regulator containing a 8e-10
PRK13837828 PRK13837, PRK13837, two-component VirA-like sensor 3e-09
TIGR02154226 TIGR02154, PhoB, phosphate regulon transcriptional 5e-09
PRK10841924 PRK10841, PRK10841, hybrid sensory kinase in two-c 8e-09
COG3852363 COG3852, NtrB, Signal transduction histidine kinas 1e-08
smart0044855 smart00448, REC, cheY-homologous receiver domain 2e-08
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 9e-08
COG3279 244 COG3279, LytT, Response regulator of the LytR/AlgR 9e-08
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 9e-08
COG3706 435 COG3706, PleD, Response regulator containing a Che 4e-07
PRK10161229 PRK10161, PRK10161, transcriptional regulator PhoB 6e-07
COG3707194 COG3707, AmiR, Response regulator with putative an 9e-07
PRK09468 239 PRK09468, ompR, osmolarity response regulator; Pro 9e-07
COG3290537 COG3290, CitA, Signal transduction histidine kinas 1e-06
TIGR03785703 TIGR03785, marine_sort_HK, proteobacterial dedicat 1e-06
TIGR01387218 TIGR01387, cztR_silR_copR, heavy metal response re 2e-06
PRK10618894 PRK10618, PRK10618, phosphotransfer intermediate p 2e-06
PRK10955 232 PRK10955, PRK10955, DNA-binding transcriptional re 2e-06
PRK12555 337 PRK12555, PRK12555, chemotaxis-specific methyleste 3e-06
CHL00148 240 CHL00148, orf27, Ycf27; Reviewed 3e-06
COG3947 361 COG3947, COG3947, Response regulator containing Ch 4e-06
PRK09581 457 PRK09581, pleD, response regulator PleD; Reviewed 5e-06
PRK09470461 PRK09470, cpxA, two-component sensor protein; Prov 1e-05
PRK15115 444 PRK15115, PRK15115, response regulator GlrR; Provi 2e-05
PRK11361 457 PRK11361, PRK11361, acetoacetate metabolism regula 3e-05
PRK09483217 PRK09483, PRK09483, response regulator; Provisiona 4e-05
PRK11073348 PRK11073, glnL, nitrogen regulation protein NR(II) 6e-05
PRK15053545 PRK15053, dpiB, sensor histidine kinase DpiB; Prov 7e-05
PRK11466914 PRK11466, PRK11466, hybrid sensory histidine kinas 1e-04
COG4191603 COG4191, COG4191, Signal transduction histidine ki 2e-04
PRK10755356 PRK10755, PRK10755, sensor protein BasS/PmrB; Prov 4e-04
TIGR02916679 TIGR02916, PEP_his_kin, putative PEP-CTERM system 4e-04
PRK10710240 PRK10710, PRK10710, DNA-binding transcriptional re 5e-04
PLN03029222 PLN03029, PLN03029, type-a response regulator prot 7e-04
PRK11697 238 PRK11697, PRK11697, putative two-component respons 8e-04
COG2201 350 COG2201, CheB, Chemotaxis response regulator conta 9e-04
TIGR01818 463 TIGR01818, ntrC, nitrogen regulation protein NR(I) 0.001
PRK10815485 PRK10815, PRK10815, sensor protein PhoQ; Provision 0.001
PRK10365 441 PRK10365, PRK10365, transcriptional regulatory pro 0.001
PRK10336219 PRK10336, PRK10336, DNA-binding transcriptional re 0.001
PRK11517223 PRK11517, PRK11517, transcriptional regulatory pro 0.002
PRK10610129 PRK10610, PRK10610, chemotaxis regulatory protein 0.002
TIGR02875 262 TIGR02875, spore_0_A, sporulation transcription fa 0.004
PRK13557540 PRK13557, PRK13557, histidine kinase; Provisional 0.004
PRK11083228 PRK11083, PRK11083, DNA-binding response regulator 0.004
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information 
 Score =  199 bits (508), Expect = 2e-52
 Identities = 100/261 (38%), Positives = 152/261 (58%), Gaps = 43/261 (16%)

Query: 410 LD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKK 467
           LD A+++A+ +   KS+FLANMSHELRTP+  +IG   + LK+   LT  Q   +  I++
Sbjct: 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT--PLTPTQRDYLQTIER 336

Query: 468 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH--NVETVLDL 525
           S+  LL ++N ILD SK+E+GK+ LEN  F L++ L+E+V + +   S H   +E  L++
Sbjct: 337 SANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAH--SAHEKGLELTLNI 394

Query: 526 SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 585
             ++P NV GDP R+ QI +NL+ N+IKFT SG+I I                       
Sbjct: 395 DPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDIL---------------------- 432

Query: 586 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKH 645
                  ++ +A        + K+ L  ++ DTG GI + +   +F++F Q D S +R+H
Sbjct: 433 -------VELRAL------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRH 479

Query: 646 GGTGLGLSIVRTLVNKMGGEI 666
           GGTGLGL I + LVN+MGG+I
Sbjct: 480 GGTGLGLVITQKLVNEMGGDI 500

Length = 919
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional Back     alignment and domain information
>gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>gnl|CDD|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|214668 smart00448, REC, cheY-homologous receiver domain Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|225818 COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional Back     alignment and domain information
>gnl|CDD|226230 COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>gnl|CDD|237135 PRK12555, PRK12555, chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>gnl|CDD|214376 CHL00148, orf27, Ycf27; Reviewed Back     alignment and domain information
>gnl|CDD|226456 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed Back     alignment and domain information
>gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|185070 PRK15115, PRK15115, response regulator GlrR; Provisional Back     alignment and domain information
>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>gnl|CDD|236538 PRK09483, PRK09483, response regulator; Provisional Back     alignment and domain information
>gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>gnl|CDD|185013 PRK15053, dpiB, sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236751 PRK10755, PRK10755, sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase Back     alignment and domain information
>gnl|CDD|182665 PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional Back     alignment and domain information
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional Back     alignment and domain information
>gnl|CDD|236956 PRK11697, PRK11697, putative two-component response-regulatory protein YehT; Provisional Back     alignment and domain information
>gnl|CDD|225111 COG2201, CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I) Back     alignment and domain information
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional Back     alignment and domain information
>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>gnl|CDD|182387 PRK10336, PRK10336, DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>gnl|CDD|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional Back     alignment and domain information
>gnl|CDD|131922 TIGR02875, spore_0_A, sporulation transcription factor Spo0A Back     alignment and domain information
>gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional Back     alignment and domain information
>gnl|CDD|236838 PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1105
PRK10841924 hybrid sensory kinase in two-component regulatory 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
PRK15347921 two component system sensor kinase SsrA; Provision 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
PRK09959 1197 hybrid sensory histidine kinase in two-component r 100.0
KOG0519786 consensus Sensory transduction histidine kinase [S 100.0
PRK10618894 phosphotransfer intermediate protein in two-compon 100.0
PRK13837828 two-component VirA-like sensor kinase; Provisional 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK13557540 histidine kinase; Provisional 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
PRK10604433 sensor protein RstB; Provisional 100.0
PRK10364457 sensor protein ZraS; Provisional 100.0
PRK10815485 sensor protein PhoQ; Provisional 100.0
PRK09835482 sensor kinase CusS; Provisional 100.0
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 100.0
COG4191603 Signal transduction histidine kinase regulating C4 100.0
PRK10549466 signal transduction histidine-protein kinase BaeS; 100.0
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.97
PRK09470461 cpxA two-component sensor protein; Provisional 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.97
PRK10490895 sensor protein KdpD; Provisional 99.97
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.97
PRK11100475 sensory histidine kinase CreC; Provisional 99.97
PRK10337449 sensor protein QseC; Provisional 99.97
PRK09467435 envZ osmolarity sensor protein; Provisional 99.97
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.96
COG4251750 Bacteriophytochrome (light-regulated signal transd 99.96
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.96
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.95
PRK11360607 sensory histidine kinase AtoS; Provisional 99.94
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.94
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 99.92
PRK11086542 sensory histidine kinase DcuS; Provisional 99.92
PRK13560807 hypothetical protein; Provisional 99.91
COG5000712 NtrY Signal transduction histidine kinase involved 99.91
PRK11644495 sensory histidine kinase UhpB; Provisional 99.89
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.87
COG0745 229 OmpR Response regulators consisting of a CheY-like 99.86
COG4192673 Signal transduction histidine kinase regulating ph 99.86
COG3290537 CitA Signal transduction histidine kinase regulati 99.83
PRK13559361 hypothetical protein; Provisional 99.79
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.78
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.75
COG3706 435 PleD Response regulator containing a CheY-like rec 99.74
COG3437 360 Response regulator containing a CheY-like receiver 99.73
PF00072112 Response_reg: Response regulator receiver domain; 99.7
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.7
COG2204 464 AtoC Response regulator containing CheY-like recei 99.69
COG4753 475 Response regulator containing CheY-like receiver d 99.69
COG0784130 CheY FOG: CheY-like receiver [Signal transduction 99.69
COG2197211 CitB Response regulator containing a CheY-like rec 99.64
COG4566202 TtrR Response regulator [Signal transduction mecha 99.62
PRK09581 457 pleD response regulator PleD; Reviewed 99.62
PRK10547670 chemotaxis protein CheA; Provisional 99.6
PLN03029222 type-a response regulator protein; Provisional 99.6
PRK10046225 dpiA two-component response regulator DpiA; Provis 99.57
COG4565224 CitB Response regulator of citrate/malate metaboli 99.56
PRK11173 237 two-component response regulator; Provisional 99.56
PRK10529225 DNA-binding transcriptional activator KdpE; Provis 99.55
PRK10816223 DNA-binding transcriptional regulator PhoP; Provis 99.55
PRK09836227 DNA-binding transcriptional activator CusR; Provis 99.54
PRK10766221 DNA-binding transcriptional regulator TorR; Provis 99.52
PRK09468 239 ompR osmolarity response regulator; Provisional 99.52
COG3947 361 Response regulator containing CheY-like receiver a 99.52
PRK10643222 DNA-binding transcriptional regulator BasR; Provis 99.51
TIGR02154226 PhoB phosphate regulon transcriptional regulatory 99.51
PRK10161229 transcriptional regulator PhoB; Provisional 99.51
PRK10701 240 DNA-binding transcriptional regulator RstA; Provis 99.5
PRK13856 241 two-component response regulator VirG; Provisional 99.5
PRK10430 239 DNA-binding transcriptional activator DcuR; Provis 99.49
PRK10336219 DNA-binding transcriptional regulator QseB; Provis 99.49
TIGR02875 262 spore_0_A sporulation transcription factor Spo0A. 99.49
PRK10955 232 DNA-binding transcriptional regulator CpxR; Provis 99.49
PRK11517223 transcriptional regulatory protein YedW; Provision 99.48
TIGR03787227 marine_sort_RR proteobacterial dedicated sortase s 99.47
PRK04184535 DNA topoisomerase VI subunit B; Validated 99.46
PRK11083228 DNA-binding response regulator CreB; Provisional 99.44
TIGR01387218 cztR_silR_copR heavy metal response regulator. Mem 99.44
PRK10840216 transcriptional regulator RcsB; Provisional 99.44
CHL00148 240 orf27 Ycf27; Reviewed 99.43
PRK09958204 DNA-binding transcriptional activator EvgA; Provis 99.42
PRK14084 246 two-component response regulator; Provisional 99.41
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.4
PRK10923 469 glnG nitrogen regulation protein NR(I); Provisiona 99.38
PRK15115 444 response regulator GlrR; Provisional 99.38
COG4567182 Response regulator consisting of a CheY-like recei 99.38
PRK12555 337 chemotaxis-specific methylesterase; Provisional 99.37
PRK10360196 DNA-binding transcriptional activator UhpA; Provis 99.37
PRK09483217 response regulator; Provisional 99.37
PRK09935210 transcriptional regulator FimZ; Provisional 99.36
PRK10365 441 transcriptional regulatory protein ZraR; Provision 99.36
PRK11361 457 acetoacetate metabolism regulatory protein AtoC; P 99.36
PRK11697 238 putative two-component response-regulatory protein 99.36
PRK10710 240 DNA-binding transcriptional regulator BaeR; Provis 99.35
TIGR02915 445 PEP_resp_reg putative PEP-CTERM system response re 99.35
PRK15479221 transcriptional regulatory protein TctD; Provision 99.34
TIGR01818 463 ntrC nitrogen regulation protein NR(I). This model 99.33
PRK10100216 DNA-binding transcriptional regulator CsgD; Provis 99.3
PRK00742 354 chemotaxis-specific methylesterase; Provisional 99.29
COG2201 350 CheB Chemotaxis response regulator containing a Ch 99.29
PRK09390202 fixJ response regulator FixJ; Provisional 99.28
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.28
PRK09581 457 pleD response regulator PleD; Reviewed 99.26
PRK11475207 DNA-binding transcriptional activator BglJ; Provis 99.24
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 99.24
PRK10610129 chemotaxis regulatory protein CheY; Provisional 99.24
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.23
PRK13435145 response regulator; Provisional 99.23
PRK15369211 two component system sensor kinase SsrB; Provision 99.19
PRK13558 665 bacterio-opsin activator; Provisional 99.19
PRK10651216 transcriptional regulator NarL; Provisional 99.18
PRK10403215 transcriptional regulator NarP; Provisional 99.18
PRK14867659 DNA topoisomerase VI subunit B; Provisional 99.18
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.18
PRK15411207 rcsA colanic acid capsular biosynthesis activation 99.16
COG3707194 AmiR Response regulator with putative antiterminat 99.15
COG0643716 CheA Chemotaxis protein histidine kinase and relat 99.12
PRK09191261 two-component response regulator; Provisional 99.09
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.07
PRK10693 303 response regulator of RpoS; Provisional 99.04
COG4585365 Signal transduction histidine kinase [Signal trans 99.01
PRK03660146 anti-sigma F factor; Provisional 98.99
cd00156113 REC Signal receiver domain; originally thought to 98.94
COG3851497 UhpB Signal transduction histidine kinase, glucose 98.92
KOG0519786 consensus Sensory transduction histidine kinase [S 98.92
COG2972456 Predicted signal transduction protein with a C-ter 98.82
COG3850574 NarQ Signal transduction histidine kinase, nitrate 98.76
PRK15029 755 arginine decarboxylase; Provisional 98.76
COG3920221 Signal transduction histidine kinase [Signal trans 98.75
COG3279 244 LytT Response regulator of the LytR/AlgR family [T 98.73
COG4564459 Signal transduction histidine kinase [Signal trans 98.7
PRK04069161 serine-protein kinase RsbW; Provisional 98.62
COG3275557 LytS Putative regulator of cell autolysis [Signal 98.44
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.42
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 98.4
PRK15426570 putative diguanylate cyclase YedQ; Provisional 98.37
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.37
PF14501100 HATPase_c_5: GHKL domain 98.22
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 98.22
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.17
COG3706 435 PleD Response regulator containing a CheY-like rec 98.17
PF0274381 Cache_1: Cache domain; InterPro: IPR004010 Cache i 98.06
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 97.84
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 97.67
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 97.42
smart0044855 REC cheY-homologous receiver domain. CheY regulate 96.73
PF06490109 FleQ: Flagellar regulatory protein FleQ; InterPro: 96.67
PRK00095617 mutL DNA mismatch repair protein; Reviewed 96.4
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 96.13
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 95.11
PRK02261137 methylaspartate mutase subunit S; Provisional 95.02
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 94.71
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 94.03
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 92.36
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 91.86
cd02067119 B12-binding B12 binding domain (B12-BD). This doma 91.66
PF00072112 Response_reg: Response regulator receiver domain; 90.93
PF03709115 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal 90.18
TIGR03815 322 CpaE_hom_Actino helicase/secretion neighborhood Cp 89.92
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 89.57
COG4999140 Uncharacterized domain of BarA-like signal transdu 89.24
COG0745229 OmpR Response regulators consisting of a CheY-like 88.82
PRK05644638 gyrB DNA gyrase subunit B; Validated 88.07
PRK05218613 heat shock protein 90; Provisional 88.01
PRK14083601 HSP90 family protein; Provisional 87.15
COG5381184 Uncharacterized protein conserved in bacteria [Fun 84.87
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 84.77
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 84.37
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 84.3
PRK00208250 thiG thiazole synthase; Reviewed 83.83
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 83.41
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 83.26
PF02310121 B12-binding: B12 binding domain; InterPro: IPR0061 82.32
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.1e-59  Score=595.32  Aligned_cols=484  Identities=26%  Similarity=0.413  Sum_probs=363.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001298          413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL  492 (1105)
Q Consensus       413 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l  492 (1105)
                      +++++++++.|++|+++|||||||||++|.|++++|.. ...++++.+++..|..++.+|.++|+++||++|++++.+.+
T Consensus       437 ~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~-~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l  515 (924)
T PRK10841        437 AQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQT-KELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI  515 (924)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            34456677889999999999999999999999999864 44677888899999999999999999999999999999999


Q ss_pred             cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCC
Q 001298          493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS  572 (1105)
Q Consensus       493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~  572 (1105)
                      +.++|++.+++++++..+...+..|++.+.+.++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.+.+...     
T Consensus       516 ~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~-----  590 (924)
T PRK10841        516 EPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD-----  590 (924)
T ss_pred             eeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe-----
Confidence            999999999999999999999999999999988888777899999999999999999999999999988765321     


Q ss_pred             CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298          573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL  652 (1105)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL  652 (1105)
                                                         ...+.|+|.|||+||+++.+++||+|||+.+.+..+..+|+||||
T Consensus       591 -----------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL  635 (924)
T PRK10841        591 -----------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL  635 (924)
T ss_pred             -----------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhH
Confidence                                               124789999999999999999999999998876667778999999


Q ss_pred             HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001298          653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE  732 (1105)
Q Consensus       653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~  732 (1105)
                      +||++||++|||+|+++|.+|+||+|+|.||+...............+..+.+..........+..|+..+|..+.....
T Consensus       636 ~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~  715 (924)
T PRK10841        636 AICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEG  715 (924)
T ss_pred             HHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEccc
Confidence            99999999999999999999999999999998644332222233445666777777777778888999998876543321


Q ss_pred             chhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhcccee
Q 001298          733 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF  812 (1105)
Q Consensus       733 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~  812 (1105)
                      ...                                         .+..+++.|..... .. .    ..        ...
T Consensus       716 ~~~-----------------------------------------~~~d~~i~d~~~~~-~~-~----~~--------~~~  740 (924)
T PRK10841        716 QEP-----------------------------------------TPEDVLITDDPVQK-KW-Q----GR--------AVI  740 (924)
T ss_pred             ccC-----------------------------------------CcCcEEEEcCcccc-cc-c----hh--------hhh
Confidence            000                                         00112222210000 00 0    00        000


Q ss_pred             EEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhcc
Q 001298          813 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF  892 (1105)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  892 (1105)
                      .+...+... +     ..........+|.....+...+..........                                
T Consensus       741 ~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--------------------------------  782 (924)
T PRK10841        741 TFCRRHIGI-P-----LEIAPGEWVHSTATPHELPALLARIYRIELES--------------------------------  782 (924)
T ss_pred             hhhhccccC-h-----hhcccCceeeccCChHHHHHHHHHHhhccccc--------------------------------
Confidence            000000000 0     00001112223333333333322221100000                                


Q ss_pred             cccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 001298          893 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV  972 (1105)
Q Consensus       893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~  972 (1105)
                                 +                      ...     ..............+++||||||++.++..+..+|++.
T Consensus       783 -----------~----------------------~~~-----~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~  824 (924)
T PRK10841        783 -----------D----------------------DSA-----NALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSL  824 (924)
T ss_pred             -----------c----------------------ccc-----ccccccccccccCCCCEEEEECCCHHHHHHHHHHHHHc
Confidence                       0                      000     00000000011124679999999999999999999999


Q ss_pred             CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcce
Q 001298          973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052 (1105)
Q Consensus       973 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1052 (1105)
                      ||.|..+.||.+|++.+..                       .+||+||||++||.|||+|++++||+..     ..+||
T Consensus       825 G~~v~~a~~g~eal~~l~~-----------------------~~~DlVl~D~~mP~mdG~el~~~ir~~~-----~~~pI  876 (924)
T PRK10841        825 GYQCKTANDGVDALNVLSK-----------------------NHIDIVLTDVNMPNMDGYRLTQRLRQLG-----LTLPV  876 (924)
T ss_pred             CCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----CCCCE
Confidence            9999999999999999864                       4799999999999999999999999753     35899


Q ss_pred             EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298         1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus      1053 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
                      |++|++...++..+|+++|||+||.||++.++|...|.++....
T Consensus       877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~  920 (924)
T PRK10841        877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV  920 (924)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999887644

>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>COG4566 TtrR Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PLN03029 type-a response regulator protein; Provisional Back     alignment and domain information
>PRK10046 dpiA two-component response regulator DpiA; Provisional Back     alignment and domain information
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK11173 two-component response regulator; Provisional Back     alignment and domain information
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional Back     alignment and domain information
>PRK09836 DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>PRK09468 ompR osmolarity response regulator; Provisional Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>PRK10161 transcriptional regulator PhoB; Provisional Back     alignment and domain information
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional Back     alignment and domain information
>PRK13856 two-component response regulator VirG; Provisional Back     alignment and domain information
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional Back     alignment and domain information
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>TIGR02875 spore_0_A sporulation transcription factor Spo0A Back     alignment and domain information
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>PRK11517 transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK11083 DNA-binding response regulator CreB; Provisional Back     alignment and domain information
>TIGR01387 cztR_silR_copR heavy metal response regulator Back     alignment and domain information
>PRK10840 transcriptional regulator RcsB; Provisional Back     alignment and domain information
>CHL00148 orf27 Ycf27; Reviewed Back     alignment and domain information
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional Back     alignment and domain information
>PRK14084 two-component response regulator; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK12555 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional Back     alignment and domain information
>PRK09483 response regulator; Provisional Back     alignment and domain information
>PRK09935 transcriptional regulator FimZ; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK11697 putative two-component response-regulatory protein YehT; Provisional Back     alignment and domain information
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK15479 transcriptional regulatory protein TctD; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional Back     alignment and domain information
>PRK00742 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK09390 fixJ response regulator FixJ; Provisional Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK10610 chemotaxis regulatory protein CheY; Provisional Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK13435 response regulator; Provisional Back     alignment and domain information
>PRK15369 two component system sensor kinase SsrB; Provisional Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK10651 transcriptional regulator NarL; Provisional Back     alignment and domain information
>PRK10403 transcriptional regulator NarP; Provisional Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional Back     alignment and domain information
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK09191 two-component response regulator; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK15029 arginine decarboxylase; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15426 putative diguanylate cyclase YedQ; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>smart00448 REC cheY-homologous receiver domain Back     alignment and domain information
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>cd02067 B12-binding B12 binding domain (B12-BD) Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure Back     alignment and domain information
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms] Back     alignment and domain information
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
3mm4_A206 Crystal Structure Of The Receiver Domain Of The His 5e-16
3c97_A140 Crystal Structure Of The Response Regulator Receive 1e-14
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 1e-13
3dge_A258 Structure Of A Histidine Kinase-response Regulator 1e-13
1m5t_A124 Crystal Structure Of The Response Regulator Divk Le 2e-09
4euk_A153 Crystal Structure Length = 153 3e-09
1oxb_B134 Complex Between Ypd1 And Sln1 Response Regulator Do 5e-09
2r25_B133 Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef 5e-09
4ew8_A268 Crystal Structure Of A C-Terminal Part Of Tyrosine 2e-08
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 4e-08
2ayz_A133 Solution Structure Of The E.Coli Rcsc C-Terminus (R 4e-07
2ayx_A254 Solution Structure Of The E.Coli Rcsc C-Terminus (R 4e-07
1w25_A 459 Response Regulator Pled In Complex With C-digmp Len 2e-06
2wb4_A 459 Activated Diguanylate Cyclase Pled In Complex With 2e-06
1b00_A127 Phob Receiver Domain From Escherichia Coli Length = 2e-06
3m6m_D143 Crystal Structure Of Rpff Complexed With Rec Domain 2e-06
1zes_A125 Bef3- Activated Phob Receiver Domain Length = 125 3e-06
1r62_A160 Crystal Structure Of The C-terminal Domain Of The T 5e-06
1k66_A149 Crystal Structure Of The Cyanobacterial Phytochrome 2e-05
3dge_C122 Structure Of A Histidine Kinase-response Regulator 3e-05
3f6p_A120 Crystal Structure Of Unphosphorelated Receiver Doma 3e-05
2zwm_A130 Crystal Structure Of Yycf Receiver Domain From Baci 4e-05
1s8n_A205 Crystal Structure Of Rv1626 From Mycobacterium Tube 5e-05
2jb9_A127 Phob Response Regulator Receiver Domain Constitutiv 7e-05
2jba_A127 Phob Response Regulator Receiver Domain Constitutiv 9e-05
3q9s_A249 Crystal Structure Of Rra(1-215) From Deinococcus Ra 2e-04
3gt7_A154 Crystal Structure Of Signal Receiver Domain Of Sign 2e-04
2jba_B127 Phob Response Regulator Receiver Domain Constitutiv 2e-04
3f7a_A 394 Structure Of Orthorhombic Crystal Form Of Pseudomon 2e-04
3eq2_A 394 Structure Of Hexagonal Crystal Form Of Pseudomonas 2e-04
3gl9_A122 The Structure Of A Histidine Kinase-Response Regula 2e-04
1jlk_A147 Crystal Structure Of The Mn(2+)-Bound Form Of Respo 3e-04
1nxo_A120 Micarec Ph7.0 Length = 120 4e-04
1i3c_A149 Response Regulator For Cyanobacterial Phytochrome, 4e-04
3a0r_A349 Crystal Structure Of Histidine Kinase Thka (Tm1359) 4e-04
3nnn_A122 Bef3 Activated Drrd Receiver Domain Length = 122 4e-04
1kgs_A225 Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG 4e-04
3c3m_A138 Crystal Structure Of The N-Terminal Domain Of Respo 7e-04
2oqr_A230 The Structure Of The Response Regulator Regx3 From 8e-04
1mvo_A136 Crystal Structure Of The Phop Receiver Domain From 9e-04
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine Kinase Cki1 From Arabidopsis Thaliana Length = 206 Back     alignment and structure 
Iteration: 1

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 11/137 (8%)
Query: 946  ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
             L G R+L+ +D  + + VA   L+K+G  VS V       EAL R++    ++R    Q
Sbjct: 58   FLRGKRVLVVDDNFISRKVATGKLKKMG--VSEVEQCDSGKEAL-RLVTEGLTQREE--Q 112
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE- 1064
            GS  + P    FD I MDCQMP+MDGYEAT EIRK E  +G R  PI+A++ H   ++E 
Sbjct: 113  GSVDKLP----FDYIFMDCQMPEMDGYEATREIRKVEKSYGVRT-PIIAVSGHDPGSEEA 167
Query: 1065 KKCLGVGMNAYLTKPID 1081
            ++ +  GM+A+L K ++
Sbjct: 168  RETIQAGMDAFLDKSLN 184
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain Of A Signal Transduction Histidine Kinase From Aspergillus Oryzae Length = 140 Back     alignment and structure
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk Length = 124 Back     alignment and structure
>pdb|4EUK|A Chain A, Crystal Structure Length = 153 Back     alignment and structure
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In Space Group P2(1)2(1)2(1) Length = 134 Back     alignment and structure
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3- Length = 133 Back     alignment and structure
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 Back     alignment and structure
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 Back     alignment and structure
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp Length = 459 Back     alignment and structure
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp Length = 459 Back     alignment and structure
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli Length = 127 Back     alignment and structure
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 143 Back     alignment and structure
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain Length = 125 Back     alignment and structure
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The Two-component System Transmitter Protein Nrii (ntrb) Length = 160 Back     alignment and structure
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome Response Regulator, Rcpb Length = 149 Back     alignment and structure
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 122 Back     alignment and structure
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 Back     alignment and structure
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 Back     alignment and structure
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis Length = 205 Back     alignment and structure
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D10a And D53e. Length = 127 Back     alignment and structure
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53a And Y102c Length = 127 Back     alignment and structure
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans Length = 249 Back     alignment and structure
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal Transduction Histidine Kinase From Syntrophus Aciditrophicus Length = 154 Back     alignment and structure
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53a And Y102c Length = 127 Back     alignment and structure
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 Back     alignment and structure
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 Back     alignment and structure
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism Length = 122 Back     alignment and structure
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response Regulator Rcp1 Length = 147 Back     alignment and structure
>pdb|1NXO|A Chain A, Micarec Ph7.0 Length = 120 Back     alignment and structure
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1 Length = 149 Back     alignment and structure
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Back     alignment and structure
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain Length = 122 Back     alignment and structure
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM THERMOTOGA Maritima Length = 225 Back     alignment and structure
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response Regulator Receiver Protein From Methanoculleus Marisnigri Jr1 Length = 138 Back     alignment and structure
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Back     alignment and structure
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 7e-71
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 2e-66
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 4e-56
1dcf_A136 ETR1 protein; beta-alpha five sandwich, transferas 1e-53
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl- 1e-53
3c97_A140 Signal transduction histidine kinase; structural g 8e-52
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5- 6e-51
1mb3_A124 Cell division response regulator DIVK; signal tran 2e-50
2ayx_A254 Sensor kinase protein RCSC; two independent struct 5e-49
2ayx_A254 Sensor kinase protein RCSC; two independent struct 3e-10
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 2e-48
3i42_A127 Response regulator receiver domain protein (CHEY- 3e-42
3luf_A259 Two-component system response regulator/ggdef doma 7e-42
3luf_A 259 Two-component system response regulator/ggdef doma 1e-17
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 3e-36
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 2e-32
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 5e-32
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 6e-32
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 5e-31
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 3e-29
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 1e-28
3grc_A140 Sensor protein, kinase; protein structure initiati 3e-28
3heb_A152 Response regulator receiver domain protein (CHEY); 1e-26
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 2e-26
1i3c_A149 Response regulator RCP1; phytochrome, signaling pr 1e-24
3h5i_A140 Response regulator/sensory box protein/ggdef domai 1e-24
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 4e-23
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 3e-21
1p6q_A129 CHEY2; chemotaxis, signal transduction, response r 9e-21
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 2e-20
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 3e-20
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 4e-20
2zay_A147 Response regulator receiver protein; structural ge 4e-20
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 4e-20
3bre_A 358 Probable two-component response regulator; protein 1e-19
1w25_A 459 Stalked-cell differentiation controlling protein; 2e-19
1w25_A 459 Stalked-cell differentiation controlling protein; 1e-12
3c3m_A138 Response regulator receiver protein; structural ge 3e-19
3gt7_A154 Sensor protein; structural genomics, signal receiv 4e-19
3hdg_A137 Uncharacterized protein; two-component sensor acti 4e-19
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 4e-19
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 5e-19
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A 6e-19
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 6e-19
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 1e-18
2j48_A119 Two-component sensor kinase; pseudo-receiver, circ 1e-18
3cg0_A140 Response regulator receiver modulated diguanylate 2e-18
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 2e-18
3lua_A140 Response regulator receiver protein; two-component 3e-18
3eq2_A 394 Probable two-component response regulator; adaptor 3e-18
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 4e-18
3h1g_A129 Chemotaxis protein CHEY homolog; sulfate-bound CHE 5e-18
3cnb_A143 DNA-binding response regulator, MERR family; signa 1e-17
3cg4_A142 Response regulator receiver domain protein (CHEY-; 3e-17
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer 6e-17
1s8n_A205 Putative antiterminator; RV1626, structural genomi 6e-17
3eqz_A135 Response regulator; structural genomics, unknown f 1e-16
1srr_A124 SPO0F, sporulation response regulatory protein; as 2e-16
3nhm_A133 Response regulator; protein structure initiative I 2e-16
3n53_A140 Response regulator receiver modulated diguanylate; 3e-16
3lte_A132 Response regulator; structural genomics, PSI, prot 1e-15
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 2e-15
2qxy_A142 Response regulator; regulation of transcription, N 2e-15
3a10_A116 Response regulator; phosphoacceptor, signaling pro 2e-15
3snk_A135 Response regulator CHEY-like protein; P-loop conta 2e-15
3n0r_A286 Response regulator; sigma factor, receiver, two-co 3e-15
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 3e-15
3cfy_A137 Putative LUXO repressor protein; structural genomi 5e-15
3hdv_A136 Response regulator; PSI-II, structural genomics, P 7e-15
2a9o_A120 Response regulator; essential protein, YYCF/YYCG h 2e-14
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 2e-14
1xhf_A123 DYE resistance, aerobic respiration control protei 3e-14
3jte_A143 Response regulator receiver protein; structural ge 3e-14
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 3e-14
3crn_A132 Response regulator receiver domain protein, CHEY-; 5e-14
3gl9_A122 Response regulator; beta-sheet, surrounded by alph 7e-14
2b4a_A138 BH3024; flavodoxin-like fold, structural genomics, 7e-14
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 8e-14
1dc7_A124 NTRC, nitrogen regulation protein; receiver domain 9e-14
1zgz_A122 Torcad operon transcriptional regulatory protein; 1e-13
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 2e-13
2oqr_A230 Sensory transduction protein REGX3; response regul 2e-13
4dad_A146 Putative pilus assembly-related protein; response 2e-13
2qsj_A154 DNA-binding response regulator, LUXR family; struc 3e-13
2gwr_A 238 DNA-binding response regulator MTRA; two-component 3e-13
2gkg_A127 Response regulator homolog; social motility, recei 4e-13
2rdm_A132 Response regulator receiver protein; structural ge 8e-13
1ny5_A 387 Transcriptional regulator (NTRC family); AAA+ ATPa 8e-13
3dzd_A 368 Transcriptional regulator (NTRC family); sigma43 a 1e-12
2jba_A127 Phosphate regulon transcriptional regulatory PROT; 1e-12
1mvo_A136 PHOP response regulator; phosphate regulon, transc 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
3r0j_A250 Possible two component system response transcript 2e-12
3rqi_A184 Response regulator protein; structural genomics, s 3e-12
3f6c_A134 Positive transcription regulator EVGA; structural 4e-12
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 6e-12
3b2n_A133 Uncharacterized protein Q99UF4; structural genomic 7e-12
1yio_A208 Response regulatory protein; transcription regulat 8e-12
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 8e-12
3q9s_A249 DNA-binding response regulator; DNA binding protei 2e-11
1zh2_A121 KDP operon transcriptional regulatory protein KDPE 6e-11
1ys7_A233 Transcriptional regulatory protein PRRA; response 7e-11
4e7p_A150 Response regulator; DNA binding, cytosol, transcri 1e-10
1dz3_A130 Stage 0 sporulation protein A; response regulator, 2e-10
3klo_A225 Transcriptional regulator VPST; REC domain, HTH do 2e-10
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 2e-10
2rjn_A154 Response regulator receiver:metal-dependent phosph 2e-10
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 3e-10
3cz5_A153 Two-component response regulator, LUXR family; str 3e-10
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 4e-10
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 5e-10
2qv0_A143 Protein MRKE; structural genomics, transcription, 8e-10
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 1e-09
2qr3_A140 Two-component system response regulator; structura 1e-09
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 8e-09
2pln_A137 HP1043, response regulator; signaling protein; 1.8 8e-09
3kyj_B145 CHEY6 protein, putative histidine protein kinase; 1e-08
4fmt_A228 CHPT protein; A phosphotransfer protein, A two-com 1e-08
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 3e-08
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 5e-08
3sy8_A 400 ROCR; TIM barrel phosphodiesterase-A, transcriptio 6e-08
3eul_A152 Possible nitrate/nitrite response transcriptional 7e-08
2hqr_A223 Putative transcriptional regulator; phosporylation 1e-07
1a2o_A 349 CHEB methylesterase; bacterial chemotaxis, adaptat 2e-07
1a04_A215 Nitrate/nitrite response regulator protein NARL; s 4e-07
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 5e-07
3t8y_A164 CHEB, chemotaxis response regulator protein-glutam 8e-07
3c3w_A225 Two component transcriptional regulatory protein; 1e-05
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  236 bits (604), Expect = 7e-71
 Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 51/268 (19%)

Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
           L++ L    D       +   K  F+ N+S+ELRTP+  IIG  E+L+  D ++    + 
Sbjct: 22  LQSALA---DRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNH 78

Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
           V  ++ ++  L R ++ +LD++++++G+M LE  +  +   L    +          V  
Sbjct: 79  VAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTL 138

Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRGWCENLDTSKNTAEFPT 580
            ++  +++   +RGD  R+ Q   +L+ N+++ T   G + +                  
Sbjct: 139 AVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSAR--------------- 182

Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
                                  R      +  +V DTG G+       +F+ F      
Sbjct: 183 -----------------------RALG--EVRLDVSDTGRGVPFHVQAHIFDRF------ 211

Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
             R  GG GLGL++V+ LV   GG + +
Sbjct: 212 VGRDRGGPGLGLALVKALVELHGGWVAL 239
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} Length = 144 Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Length = 143 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Length = 146 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} Length = 152 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Length = 140 Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Length = 147 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Length = 358 Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Length = 138 Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Length = 154 Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Length = 128 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Length = 119 Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Length = 140 Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Length = 394 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 Back     alignment and structure
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Length = 129 Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Length = 143 Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Length = 142 Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} Length = 135 Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Length = 133 Back     alignment and structure
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} Length = 140 Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Length = 132 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 Back     alignment and structure
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Length = 116 Back     alignment and structure
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Length = 135 Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Length = 286 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} Length = 136 Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Length = 120 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Length = 123 Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} Length = 136 Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 Back     alignment and structure
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Length = 122 Back     alignment and structure
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Length = 138 Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Length = 120 Back     alignment and structure
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Length = 122 Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Length = 136 Back     alignment and structure
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Length = 230 Back     alignment and structure
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Length = 146 Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Length = 238 Back     alignment and structure
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Length = 127 Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Length = 132 Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Length = 387 Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368 Back     alignment and structure
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Length = 127 Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Length = 184 Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Length = 134 Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Length = 220 Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Length = 133 Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Length = 121 Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Length = 249 Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Length = 121 Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Length = 233 Back     alignment and structure
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Length = 150 Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Length = 130 Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Length = 225 Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Length = 154 Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Length = 153 Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Length = 196 Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Length = 225 Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Length = 140 Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141 Back     alignment and structure
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Length = 137 Back     alignment and structure
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Length = 145 Back     alignment and structure
>4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Length = 139 Back     alignment and structure
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Length = 400 Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Length = 223 Back     alignment and structure
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Length = 349 Back     alignment and structure
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Length = 215 Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 Back     alignment and structure
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Length = 164 Back     alignment and structure
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Length = 225 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1105
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 100.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 100.0
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 100.0
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 100.0
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 100.0
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.98
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.98
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.97
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.97
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 99.94
3to5_A134 CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p 99.94
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.9
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.9
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.9
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 99.89
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.89
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.89
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.88
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.88
3luf_A259 Two-component system response regulator/ggdef doma 99.88
2lpm_A123 Two-component response regulator; transcription re 99.86
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.85
3gl9_A122 Response regulator; beta-sheet, surrounded by alph 99.84
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 99.83
2ayx_A254 Sensor kinase protein RCSC; two independent struct 99.83
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5- 99.82
3n0r_A286 Response regulator; sigma factor, receiver, two-co 99.82
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 99.82
3h1g_A129 Chemotaxis protein CHEY homolog; sulfate-bound CHE 99.82
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl- 99.81
3rqi_A184 Response regulator protein; structural genomics, s 99.78
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 99.78
3gt7_A154 Sensor protein; structural genomics, signal receiv 99.78
1mb3_A124 Cell division response regulator DIVK; signal tran 99.77
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.77
3zxo_A129 Redox sensor histidine kinase response regulator; 99.77
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 99.77
1srr_A124 SPO0F, sporulation response regulatory protein; as 99.77
3crn_A132 Response regulator receiver domain protein, CHEY-; 99.77
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer 99.76
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A 99.76
3lua_A140 Response regulator receiver protein; two-component 99.76
2a9o_A120 Response regulator; essential protein, YYCF/YYCG h 99.76
1dcf_A136 ETR1 protein; beta-alpha five sandwich, transferas 99.76
1zgz_A122 Torcad operon transcriptional regulatory protein; 99.76
3r0j_A250 Possible two component system response transcript 99.76
3b2n_A133 Uncharacterized protein Q99UF4; structural genomic 99.76
1xhf_A123 DYE resistance, aerobic respiration control protei 99.75
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 99.75
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 99.75
3grc_A140 Sensor protein, kinase; protein structure initiati 99.75
3heb_A152 Response regulator receiver domain protein (CHEY); 99.75
1i3c_A149 Response regulator RCP1; phytochrome, signaling pr 99.75
1dz3_A130 Stage 0 sporulation protein A; response regulator, 99.75
1p6q_A129 CHEY2; chemotaxis, signal transduction, response r 99.75
3i42_A127 Response regulator receiver domain protein (CHEY- 99.75
3hdv_A136 Response regulator; PSI-II, structural genomics, P 99.75
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 99.74
4dad_A146 Putative pilus assembly-related protein; response 99.74
3c3m_A138 Response regulator receiver protein; structural ge 99.74
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 99.74
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 99.74
3kto_A136 Response regulator receiver protein; PSI-II,struct 99.74
3cfy_A137 Putative LUXO repressor protein; structural genomi 99.74
1mvo_A136 PHOP response regulator; phosphate regulon, transc 99.74
3nhm_A133 Response regulator; protein structure initiative I 99.74
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 99.74
4e7p_A150 Response regulator; DNA binding, cytosol, transcri 99.74
3f6c_A134 Positive transcription regulator EVGA; structural 99.73
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 99.73
3hdg_A137 Uncharacterized protein; two-component sensor acti 99.73
1zh2_A121 KDP operon transcriptional regulatory protein KDPE 99.73
3cnb_A143 DNA-binding response regulator, MERR family; signa 99.73
3jte_A143 Response regulator receiver protein; structural ge 99.73
3h5i_A140 Response regulator/sensory box protein/ggdef domai 99.73
3dzd_A 368 Transcriptional regulator (NTRC family); sigma43 a 99.73
2jba_A127 Phosphate regulon transcriptional regulatory PROT; 99.73
3snk_A135 Response regulator CHEY-like protein; P-loop conta 99.73
3eul_A152 Possible nitrate/nitrite response transcriptional 99.73
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.73
2zay_A147 Response regulator receiver protein; structural ge 99.72
3lte_A132 Response regulator; structural genomics, PSI, prot 99.72
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 99.72
3q9s_A249 DNA-binding response regulator; DNA binding protei 99.72
3a10_A116 Response regulator; phosphoacceptor, signaling pro 99.71
1a04_A215 Nitrate/nitrite response regulator protein NARL; s 99.71
1yio_A208 Response regulatory protein; transcription regulat 99.71
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 99.71
2qxy_A142 Response regulator; regulation of transcription, N 99.71
3n53_A140 Response regulator receiver modulated diguanylate; 99.7
3cg0_A140 Response regulator receiver modulated diguanylate 99.7
1s8n_A205 Putative antiterminator; RV1626, structural genomi 99.7
1w25_A 459 Stalked-cell differentiation controlling protein; 99.7
2qr3_A140 Two-component system response regulator; structura 99.69
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 99.69
2rjn_A154 Response regulator receiver:metal-dependent phosph 99.69
3cg4_A142 Response regulator receiver domain protein (CHEY-; 99.69
3eq2_A 394 Probable two-component response regulator; adaptor 99.69
3c97_A140 Signal transduction histidine kinase; structural g 99.69
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 99.68
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 99.68
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 99.68
3cz5_A153 Two-component response regulator, LUXR family; str 99.68
1ny5_A 387 Transcriptional regulator (NTRC family); AAA+ ATPa 99.68
2gkg_A127 Response regulator homolog; social motility, recei 99.68
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 99.67
1ys7_A233 Transcriptional regulatory protein PRRA; response 99.67
2pln_A137 HP1043, response regulator; signaling protein; 1.8 99.67
2gwr_A 238 DNA-binding response regulator MTRA; two-component 99.67
3eqz_A135 Response regulator; structural genomics, unknown f 99.66
2oqr_A230 Sensory transduction protein REGX3; response regul 99.66
3kyj_B145 CHEY6 protein, putative histidine protein kinase; 99.66
2rdm_A132 Response regulator receiver protein; structural ge 99.65
2j48_A119 Two-component sensor kinase; pseudo-receiver, circ 99.65
2qv0_A143 Protein MRKE; structural genomics, transcription, 99.65
3bre_A 358 Probable two-component response regulator; protein 99.65
3t8y_A164 CHEB, chemotaxis response regulator protein-glutam 99.64
2qsj_A154 DNA-binding response regulator, LUXR family; struc 99.63
3klo_A225 Transcriptional regulator VPST; REC domain, HTH do 99.63
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.63
3c3w_A225 Two component transcriptional regulatory protein; 99.63
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 99.63
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.63
2b4a_A138 BH3024; flavodoxin-like fold, structural genomics, 99.63
3sy8_A 400 ROCR; TIM barrel phosphodiesterase-A, transcriptio 99.62
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 99.6
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.59
2hqr_A223 Putative transcriptional regulator; phosporylation 99.59
1dc7_A124 NTRC, nitrogen regulation protein; receiver domain 99.59
1w25_A 459 Stalked-cell differentiation controlling protein; 99.58
3luf_A 259 Two-component system response regulator/ggdef doma 99.57
1a2o_A 349 CHEB methylesterase; bacterial chemotaxis, adaptat 99.54
2vyc_A 755 Biodegradative arginine decarboxylase; pyridoxal p 99.52
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.35
3cwo_X 237 Beta/alpha-barrel protein based on 1THF and 1TMY; 98.93
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.36
4dah_A217 Sporulation kinase D; alpha-beta-alpha structure, 98.33
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.25
3li9_A291 Hypothetical sensory transduction histidine kinas; 98.14
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.13
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 98.06
3lib_A290 Hypothetical sensory transduction histidine kinas; 98.02
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.01
3lif_A254 Putative diguanylate cyclase (ggdef) with PAS/PAC; 98.01
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 97.97
3lic_A274 Sensor protein; PDC fold, ATP-binding, kinase, nuc 97.96
3c8c_A240 Methyl-accepting chemotaxis protein; structural ge 97.71
3cwo_X237 Beta/alpha-barrel protein based on 1THF and 1TMY; 97.69
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 97.66
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 97.42
3e4o_A305 C4-dicarboxylate transport sensor protein DCTB; PA 97.39
3lid_A295 Putative sensory BOX/ggdef family protein; PDC fol 97.23
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.15
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 97.12
2ayx_A 254 Sensor kinase protein RCSC; two independent struct 97.11
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 96.76
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 96.63
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 96.54
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 96.47
3by9_A260 Sensor protein; histidine kinase sensor domain, ph 96.24
3to5_A134 CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p 96.01
3n75_A 715 LDC, lysine decarboxylase, inducible; pyridoxal-5' 95.81
3r0j_A250 Possible two component system response transcript 95.17
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 95.07
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 94.89
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 94.35
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 93.97
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl- 93.85
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 93.63
3q7r_A121 Transcriptional regulatory protein; CHXR, receiver 93.5
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 93.33
3peh_A281 Endoplasmin homolog; structural genomics, structur 92.68
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 92.53
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 92.4
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 91.9
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 91.82
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 91.7
3gl9_A122 Response regulator; beta-sheet, surrounded by alph 91.55
3hdv_A136 Response regulator; PSI-II, structural genomics, P 91.48
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 91.39
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 91.34
1dcf_A136 ETR1 protein; beta-alpha five sandwich, transferas 90.79
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 90.75
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 90.61
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 90.46
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 90.3
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 90.24
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 90.2
3f6c_A134 Positive transcription regulator EVGA; structural 89.61
3grc_A140 Sensor protein, kinase; protein structure initiati 89.47
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 89.41
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 89.37
3gt7_A154 Sensor protein; structural genomics, signal receiv 89.08
4duh_A220 DNA gyrase subunit B; structure-based drug design, 88.87
3lte_A132 Response regulator; structural genomics, PSI, prot 88.86
1srr_A124 SPO0F, sporulation response regulatory protein; as 88.63
3hdg_A137 Uncharacterized protein; two-component sensor acti 88.6
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 88.46
3h5i_A140 Response regulator/sensory box protein/ggdef domai 88.42
1mb3_A124 Cell division response regulator DIVK; signal tran 88.08
3i42_A127 Response regulator receiver domain protein (CHEY- 87.99
3h1g_A129 Chemotaxis protein CHEY homolog; sulfate-bound CHE 87.91
3jte_A143 Response regulator receiver protein; structural ge 87.7
3cg4_A142 Response regulator receiver domain protein (CHEY-; 87.64
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer 87.53
3cg0_A140 Response regulator receiver modulated diguanylate 87.11
2zay_A147 Response regulator receiver protein; structural ge 86.96
3crn_A132 Response regulator receiver domain protein, CHEY-; 86.82
1zgz_A122 Torcad operon transcriptional regulatory protein; 86.82
3lua_A140 Response regulator receiver protein; two-component 86.72
3cnb_A143 DNA-binding response regulator, MERR family; signa 86.62
3eul_A152 Possible nitrate/nitrite response transcriptional 86.5
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5- 86.5
3b2n_A133 Uncharacterized protein Q99UF4; structural genomic 86.37
3snk_A135 Response regulator CHEY-like protein; P-loop conta 86.21
1xhf_A123 DYE resistance, aerobic respiration control protei 86.21
2lpm_A123 Two-component response regulator; transcription re 86.16
2gkg_A127 Response regulator homolog; social motility, recei 86.16
3nhm_A133 Response regulator; protein structure initiative I 86.0
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 85.94
4e7p_A150 Response regulator; DNA binding, cytosol, transcri 85.83
3rqi_A184 Response regulator protein; structural genomics, s 85.79
3cfy_A137 Putative LUXO repressor protein; structural genomi 85.73
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 85.73
1ccw_A137 Protein (glutamate mutase); coenzyme B12, radical 85.7
1mvo_A136 PHOP response regulator; phosphate regulon, transc 85.61
3c3m_A138 Response regulator receiver protein; structural ge 85.55
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 85.54
3heb_A152 Response regulator receiver domain protein (CHEY); 85.52
3kto_A136 Response regulator receiver protein; PSI-II,struct 85.42
3n0r_A286 Response regulator; sigma factor, receiver, two-co 85.21
2rjn_A154 Response regulator receiver:metal-dependent phosph 85.19
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 85.17
2qr3_A140 Two-component system response regulator; structura 85.14
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 84.92
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 84.91
4dad_A146 Putative pilus assembly-related protein; response 84.65
2a9o_A120 Response regulator; essential protein, YYCF/YYCG h 84.43
2j48_A119 Two-component sensor kinase; pseudo-receiver, circ 84.43
3a10_A116 Response regulator; phosphoacceptor, signaling pro 84.26
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 84.09
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A 83.47
2htm_A268 Thiazole biosynthesis protein THIG; thiamin biosyn 82.84
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 82.53
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 82.39
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 82.17
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 82.14
3cz5_A153 Two-component response regulator, LUXR family; str 82.07
1yio_A208 Response regulatory protein; transcription regulat 82.04
2qxy_A142 Response regulator; regulation of transcription, N 81.86
1p6q_A129 CHEY2; chemotaxis, signal transduction, response r 81.76
1zh2_A121 KDP operon transcriptional regulatory protein KDPE 81.68
1dz3_A130 Stage 0 sporulation protein A; response regulator, 81.6
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 81.49
1ys7_A233 Transcriptional regulatory protein PRRA; response 81.21
2gwr_A238 DNA-binding response regulator MTRA; two-component 81.03
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 80.99
3c97_A140 Signal transduction histidine kinase; structural g 80.79
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 80.56
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=100.00  E-value=2e-38  Score=348.29  Aligned_cols=233  Identities=28%  Similarity=0.398  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001298          414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD--QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME  491 (1105)
Q Consensus       414 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~--~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~  491 (1105)
                      ++.++.++.|.+|++++||||||||++|.|++++|....  ...++..+++..|.+++.+|..++++++++++++.+...
T Consensus        11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~   90 (258)
T 2c2a_A           11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ   90 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            345556677889999999999999999999999986431  123445678889999999999999999999999999999


Q ss_pred             ccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC----cEEEEeecc
Q 001298          492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG----HIIIRGWCE  567 (1105)
Q Consensus       492 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G----~i~v~~~~~  567 (1105)
                      +..+++++.+++++++..+...+..+++.+.++.....+..+.+|+.+|.|||.|||+||+||++.|    .|.+.+...
T Consensus        91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~  170 (258)
T 2c2a_A           91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK  170 (258)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred             CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence            9999999999999999999999999999998887644555788999999999999999999999754    355443211


Q ss_pred             ccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001298          568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG  647 (1105)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G  647 (1105)
                                                              ...+.|+|.|+|+|||++.+++||+|||+.+.+.+...+|
T Consensus       171 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G  210 (258)
T 2c2a_A          171 ----------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPG  210 (258)
T ss_dssp             ----------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------
T ss_pred             ----------------------------------------CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCC
Confidence                                                    1247799999999999999999999999988765656679


Q ss_pred             ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298          648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA  686 (1105)
Q Consensus       648 tGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~  686 (1105)
                      +||||+|||++|+.|||+|+++|.+|+||+|+|.||...
T Consensus       211 ~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~  249 (258)
T 2c2a_A          211 TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR  249 (258)
T ss_dssp             CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred             cchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence            999999999999999999999999999999999999754
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A Back     alignment and structure
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Back     alignment and structure
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Back     alignment and structure
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0 Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Back     alignment and structure
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 Back     alignment and structure
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Back     alignment and structure
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Back     alignment and structure
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Back     alignment and structure
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Back     alignment and structure
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Back     alignment and structure
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Back     alignment and structure
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A* Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis} Back     alignment and structure
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str} Back     alignment and structure
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A Back     alignment and structure
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A* Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae} Back     alignment and structure
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} Back     alignment and structure
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Back     alignment and structure
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 Back     alignment and structure
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Back     alignment and structure
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Back     alignment and structure
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti} Back     alignment and structure
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Back     alignment and structure
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Back     alignment and structure
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Back     alignment and structure
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1105
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 4e-35
d1dcfa_134 c.23.1.2 (A:) Receiver domain of the ethylene rece 5e-28
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 4e-26
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 1e-25
d2r25b1128 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba 7e-25
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 8e-25
d1u0sy_118 c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T 9e-24
d1dz3a_123 c.23.1.1 (A:) Sporulation response regulator Spo0A 2e-23
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 1e-22
d1zesa1121 c.23.1.1 (A:3-123) PhoB receiver domain {Escherich 1e-22
d1i3ca_144 c.23.1.1 (A:) Response regulator for cyanobacteria 2e-22
d1jbea_128 c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI 5e-22
d1peya_119 c.23.1.1 (A:) Sporulation response regulator Spo0F 5e-22
d1k68a_140 c.23.1.1 (A:) Response regulator for cyanobacteria 2e-21
d2b4aa1118 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba 2e-21
d1a04a2138 c.23.1.1 (A:5-142) Nitrate/nitrite response regula 3e-21
d1mb3a_123 c.23.1.1 (A:) Cell division response regulator Div 7e-21
d2a9pa1117 c.23.1.1 (A:2-118) DNA-binding response regulator 2e-19
d1k66a_149 c.23.1.1 (A:) Response regulator for cyanobacteria 2e-19
d1p6qa_129 c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti 4e-19
d1a2oa1140 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal 9e-19
d2ayxa1133 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C 2e-18
d1zgza1120 c.23.1.1 (A:2-121) TorCAD operon transcriptional r 9e-18
d1xhfa1121 c.23.1.1 (A:2-122) Aerobic respiration control pro 1e-17
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 2e-17
d1s8na_190 c.23.1.1 (A:) Probable two-component system transc 2e-17
d2pl1a1119 c.23.1.1 (A:1-119) PhoP receiver domain {Escherich 6e-17
d1dbwa_123 c.23.1.1 (A:) Transcriptional regulatory protein F 2e-16
d1krwa_123 c.23.1.1 (A:) NTRC receiver domain {Salmonella typ 2e-16
d1mvoa_121 c.23.1.1 (A:) PhoP receiver domain {Bacillus subti 3e-16
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 3e-16
d1ys7a2121 c.23.1.1 (A:7-127) Transcriptional regulatory prot 3e-16
d1qkka_140 c.23.1.1 (A:) Transcriptional regulatory protein D 1e-15
d1zh2a1119 c.23.1.1 (A:2-120) Transcriptional regulatory prot 1e-15
d1yioa2128 c.23.1.1 (A:3-130) Response regulatory protein Sty 2e-15
d1p2fa2120 c.23.1.1 (A:1-120) Response regulator DrrB {Thermo 3e-15
d1ny5a1137 c.23.1.1 (A:1-137) Transcriptional activator sigm5 6e-15
d1kgsa2122 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog 3e-14
d1w25a1139 c.23.1.1 (A:2-140) Response regulator PleD, receiv 2e-13
d1qo0d_189 c.23.1.3 (D:) Positive regulator of the amidase op 3e-13
d1w25a2153 c.23.1.1 (A:141-293) Response regulator PleD, rece 3e-13
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 2e-12
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 4e-12
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 9e-10
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 2e-06
d1i58a_189 d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m 3e-06
d1ixma_179 d.123.1.1 (A:) Sporulation response regulatory pro 6e-04
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score =  129 bits (325), Expect = 4e-35
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 36/192 (18%)

Query: 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINN 550
           ++   + DL   +E  V+      S+HNV  + + +   P     DP R+ Q+  NL+NN
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 551 SIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610
            +K++                                                 ++    
Sbjct: 61  GVKYSKKDAPDKYVKV------------------------------------ILDEKDGG 84

Query: 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVK 670
           +   V+D G GI     + +FE F + D S T +  GTGLGL+I + +V   GG I V  
Sbjct: 85  VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVES 144

Query: 671 KNSPGTLMQLYL 682
           +   G+   +++
Sbjct: 145 EVGKGSRFFVWI 156
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 Back     information, alignment and structure
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119 Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138 Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 140 Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120 Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123 Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123 Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121 Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Length = 140 Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128 Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120 Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122 Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139 Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Length = 189 Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1105
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 100.0
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.96
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.96
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.95
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.94
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.93
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.93
d1dcfa_134 Receiver domain of the ethylene receptor {Thale cr 99.93
d2pl1a1119 PhoP receiver domain {Escherichia coli [TaxId: 562 99.92
d1mb3a_123 Cell division response regulator DivK {Caulobacter 99.92
d1zesa1121 PhoB receiver domain {Escherichia coli [TaxId: 562 99.92
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 99.92
d2r25b1128 Response regulator Sin1 {Baker's yeast (Saccharomy 99.92
d1peya_119 Sporulation response regulator Spo0F {Bacillus sub 99.92
d1ys7a2121 Transcriptional regulatory protein PrrA, N-termina 99.91
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 99.91
d1mvoa_121 PhoP receiver domain {Bacillus subtilis [TaxId: 14 99.91
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 99.91
d1xhfa1121 Aerobic respiration control protein ArcA, N-termin 99.91
d1dbwa_123 Transcriptional regulatory protein FixJ, receiver 99.91
d1jbea_128 CheY protein {Escherichia coli [TaxId: 562]} 99.9
d1u0sy_118 CheY protein {Thermotoga maritima [TaxId: 2336]} 99.9
d1k68a_140 Response regulator for cyanobacterial phytochrome 99.9
d1p6qa_129 CheY protein {Sinorhizobium meliloti, CheY2 [TaxId 99.9
d2ayxa1133 Sensor kinase protein RcsC, C-terminal domain {Esc 99.9
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 99.9
d1w25a1139 Response regulator PleD, receiver domain {Caulobac 99.9
d1k66a_149 Response regulator for cyanobacterial phytochrome 99.9
d1krwa_123 NTRC receiver domain {Salmonella typhimurium [TaxI 99.89
d1dz3a_123 Sporulation response regulator Spo0A {Bacillus ste 99.89
d1i3ca_144 Response regulator for cyanobacterial phytochrome 99.89
d1ny5a1137 Transcriptional activator sigm54 (NtrC1), N-termin 99.89
d1s8na_190 Probable two-component system transcriptional regu 99.89
d1qkka_140 Transcriptional regulatory protein DctD, receiver 99.89
d1w25a2153 Response regulator PleD, receiver domain {Caulobac 99.88
d1p2fa2120 Response regulator DrrB {Thermotoga maritima [TaxI 99.88
d1yioa2128 Response regulatory protein StyR, N-terminal domai 99.87
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 99.87
d2b4aa1118 Hypothetical protein BH3024 {Bacillus halodurans [ 99.83
d1a2oa1140 Methylesterase CheB, N-terminal domain {Salmonella 99.81
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 99.79
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.72
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.59
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.51
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.46
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.29
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.22
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 99.09
d1dcfa_134 Receiver domain of the ethylene receptor {Thale cr 97.1
d1peya_119 Sporulation response regulator Spo0F {Bacillus sub 96.29
d1ys7a2121 Transcriptional regulatory protein PrrA, N-termina 96.2
d1mb3a_123 Cell division response regulator DivK {Caulobacter 96.06
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 96.06
d2ayxa1133 Sensor kinase protein RcsC, C-terminal domain {Esc 96.05
d1mvoa_121 PhoP receiver domain {Bacillus subtilis [TaxId: 14 96.03
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 96.03
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 95.97
d1u0sy_118 CheY protein {Thermotoga maritima [TaxId: 2336]} 95.93
d1dbwa_123 Transcriptional regulatory protein FixJ, receiver 95.9
d2pl1a1119 PhoP receiver domain {Escherichia coli [TaxId: 562 95.79
d2r25b1128 Response regulator Sin1 {Baker's yeast (Saccharomy 95.78
d1zesa1121 PhoB receiver domain {Escherichia coli [TaxId: 562 95.64
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 95.43
d1xhfa1121 Aerobic respiration control protein ArcA, N-termin 95.1
d1p6qa_129 CheY protein {Sinorhizobium meliloti, CheY2 [TaxId 95.07
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 95.02
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 94.89
d2p7ja2172 GGDEF family protein VP0354 {Vibrio parahaemolytic 94.87
d1jbea_128 CheY protein {Escherichia coli [TaxId: 562]} 94.81
d1k66a_149 Response regulator for cyanobacterial phytochrome 94.69
d1ny5a1137 Transcriptional activator sigm54 (NtrC1), N-termin 94.61
d1krwa_123 NTRC receiver domain {Salmonella typhimurium [TaxI 94.55
d1i3ca_144 Response regulator for cyanobacterial phytochrome 94.39
d1w25a1139 Response regulator PleD, receiver domain {Caulobac 94.33
d1k68a_140 Response regulator for cyanobacterial phytochrome 94.15
d1dz3a_123 Sporulation response regulator Spo0A {Bacillus ste 93.97
d1yioa2128 Response regulatory protein StyR, N-terminal domai 93.96
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 93.22
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 92.67
d1qkka_140 Transcriptional regulatory protein DctD, receiver 92.53
d1s8na_190 Probable two-component system transcriptional regu 92.32
d1p2fa2120 Response regulator DrrB {Thermotoga maritima [TaxI 91.89
d1w25a2153 Response regulator PleD, receiver domain {Caulobac 91.81
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 89.79
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 89.33
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 88.15
d2b4aa1118 Hypothetical protein BH3024 {Bacillus halodurans [ 85.24
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 85.14
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 84.83
d1a2oa1140 Methylesterase CheB, N-terminal domain {Salmonella 81.2
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.8e-33  Score=282.31  Aligned_cols=155  Identities=27%  Similarity=0.399  Sum_probs=130.5

Q ss_pred             cccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc----EEEEeec
Q 001298          491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWC  566 (1105)
Q Consensus       491 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~----i~v~~~~  566 (1105)
                      +++.++|||.+++++++..+...+..+++++.++.+...|..+.+|+.+|+|||.|||+||+|||++|.    |.+....
T Consensus         1 el~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~   80 (161)
T d2c2aa2           1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE   80 (161)
T ss_dssp             CCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE
T ss_pred             CCccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEe
Confidence            367789999999999999999999999999999887666667999999999999999999999998764    4433211


Q ss_pred             cccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCC
Q 001298          567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG  646 (1105)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~  646 (1105)
                                                              ....+.|+|.|+|+|||++++++||+||||++.+.+++.+
T Consensus        81 ----------------------------------------~~~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~  120 (161)
T d2c2aa2          81 ----------------------------------------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVP  120 (161)
T ss_dssp             ----------------------------------------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC--------
T ss_pred             ----------------------------------------cCCEEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCC
Confidence                                                    1124789999999999999999999999999988777888


Q ss_pred             CccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298          647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG  685 (1105)
Q Consensus       647 GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~  685 (1105)
                      |+||||+|||+||++|||+|+++|++|+||+|+|+||..
T Consensus       121 G~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lP~~  159 (161)
T d2c2aa2         121 GTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKD  159 (161)
T ss_dssp             -CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred             cccHHHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEEcc
Confidence            999999999999999999999999999999999999975
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Back     information, alignment and structure
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure