Citrus Sinensis ID: 001299

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100-----
MYRLDQLRKQINGPSSQLQEQNRVIQRKSWNPKGLWFTAKSRGSQKIIQVERNGLPTQKMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDES
ccHHHHHHHHHccccHHHHHHcccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccccEEEcccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccccEEEcccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHccHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccHHcccccEEEEEEEEEcccccccccccccccEEEEEEEcccccccccccccHHHHHccccEEEEEcccHHHHHccccHHHHHHHHHccEEEEEcccccccccccccccccccccccccccccccccc
cccccEEEEccccccccccccccEEEEEEEcccccccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccccccccEEEcccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcEEEEEEcccccccccHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccEEccccccccEEEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEccccccccEccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccHcccccccccccccccccccEEEEcccccccccccccccccHHccccccccccHHHHcccccccccccccccccccHHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHcccccHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHEcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHcHHcccccccHHHcccEcccHHHHHHHHHHHHHHccccHHHcccEEEEccccccccccccccccHcccccEEEEcccccHHHcccccccccccccEEEEEEccccccccccccccccccccccccccccccccccHHHccccEEEEEEEEEcccccccccccccEEEEEEEEEEccccccccccccHHHHHccccEEEEEccccHHHHccccHHHHHHHHHccEEEEEcccccccccccHHHHccccccHcccccccccccc
MYRLDQLRkqingpssqlqEQNRVIQrkswnpkglwftaksrgsqKIIQVErnglptqkmpprysrglqvDMEQQLMQSTTADIIRKFKdltirdggsqlplqcnkadgpsnvhnavvpyqvgpssehgalvpHQIKEKrkklkpevvldpgtlrMWNLImniddgttkdqtsnEDMEKWWQKEREVFEGRIQSFTARMHLILgdrrfkpwkgsvvDSVVGVYLTQNvsdnlsssAYMSLAarfplkstndhtpsdenlrttaslepigsnstsngavydsegnmyfvtepepdrccelkdrdDAFDSRIQRKALqengdikvmtdavpsqafdtssvqsldrtqlfptgnskadvasstktsnaESFITQFshtgnlkknsvnqlfptvnskadvaspsqnhitqssvtqfwptgnstadvaspsktcikessiaasteipqlentallqdkvdgilfcdecldgytkptridngnqastsgrndlksdfrsisssdfndpfeisvlpsnresfrtgmpqahdatttskksprgkgkskeyksdmkndrtkkttpkknsdntvQQDWDLLRRIYStgeershdkmdsvdweavrCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHgsidlewlrnvppdkvKEYLLDIEGLGLKSVECVRLLSLQhiafpvdvnvGRIAVrlgwvplqplpgdlhihllkeypvmdkiqmylwprlcyldqKTLYELHYQMITFGKifckkrspncgacplrgecKHFASAVASarfalpgpsekgivtsefgngigqspplvvnpipvirieadpvsesgyqinncepiieeprspgpqcsespeseiddddfsigdieeiptlrLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCahlrtehhvyvlpdahellrgfdrrdpddpspyllaiwspgespnsvgspqyrcnskdsklcnseicyscnsvcernagivrgtilipcrtanrgrfplngtyfqvnevfadhetshhpinvprhtIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFvcvrgfdrryrcprplvnrlhcspskkeagskrsrdes
myrldqlrkqingpssqlqeqNRVIqrkswnpkglwftaksrgsqkiiqvernglptqkmpprYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQikekrkklkpevvldpgtlrmwNLIMniddgttkdqtsNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLrttaslepigsnstsngavydSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRkalqengdikvmTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQfshtgnlkkNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGytkptridngnqastsgrndlKSDFRSisssdfndpfEISVLPSNRESFRtgmpqahdatttskksprgkgkskeyksdmkndrtkkttpkknsdntvqqdwDLLRRIYStgeershdkmdsvdWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGsidlewlrnvppDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESpeseiddddfsiGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIwspgespnsvgSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCprplvnrlhcspskkeagskrsrdes
MYRLDQLRKQINGPSSQLQEQNRVIQRKSWNPKGLWFTAKSRGSQKIIQVERNGLPTQKMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDAtttskksprgkgkskEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCsespeseiddddfsigdieeiPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDES
*****************************WNPKGLWFTA******************************************ADIIRKFKDLTIRD********************AVVPY*************************EVVLDPGTLRMWNLIMNIDD*************KWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNL****************************************************MYFV*********************************************************************************************************************************************************PQLENTALLQDKVDGILFCDECLDGYTK**************************************************************************************************WDLLRRIY*************VDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGP*EKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNC**********************************I*TLR********NFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGF**********YLLAIW*********************KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH*****************
********KQ********************************************************************STTADIIRKFKDLTIRD*******************NAVVPYQVGPSSEHGALVPHQI**********VVLDPGTLRMWNLIMNI****************WWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAAR********************************************************************************************************************************************************************************************************************************************************************************************************************************VQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF**********************************************************CEPIIEEPRSPGP***ESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFP********************AEAASV**RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGE************************CYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRL******************
MYRLDQLRKQINGPSSQLQEQNRVIQRKSWNPKGLWFTAKSRGSQKIIQVERNGLPTQKMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTT*********EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPT***************AESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFR**********************************************TVQQDWDLLRRIYSTG*********SVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEE****************DDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGE**************KDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCS***************
*YRLDQLRKQINGPSSQLQEQNRVIQRKSWNP***************IQVERNGLPTQK*****SRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADG*SNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNID********SNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPL**************TTASLEP**SN*************MYFV***EPDRCCELKDRDDAFDSRIQRK******DIKV*T***PSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQL***************************************************STEIP**ENTA**QD***********************************************************************************************************SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALP*********************LVVNP*PVIRI*******SGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGE*******************C**EICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHC****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYRLDQLRKQINGPSSQLQEQNRVIQRKSWNPKGLWFTAKSRGSQKIIQVERNGLPTQKMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1105 2.2.26 [Sep-21-2011]
Q8LK561987 Transcriptional activator no no 0.474 0.263 0.574 1e-179
Q9SJQ61393 Protein ROS1 OS=Arabidops no no 0.466 0.370 0.579 1e-177
Q9SR661332 DEMETER-like protein 2 OS no no 0.613 0.509 0.450 1e-164
O494981044 DEMETER-like protein 3 OS no no 0.474 0.501 0.498 1e-143
Q9WYK0213 Endonuclease III OS=Therm no no 0.126 0.657 0.299 9e-07
O05956212 Endonuclease III OS=Ricke yes no 0.097 0.509 0.259 0.0008
P39788219 Probable endonuclease III yes no 0.122 0.616 0.254 0.0009
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 Back     alignment and function desciption
 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 307/534 (57%), Positives = 382/534 (71%), Gaps = 10/534 (1%)

Query: 568  WDLLRRIYSTGE---ERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 624
            WD LR+     E   ER+ + MDS+D+EA+R A  SEI++AIKERG  N++A RIK+FL 
Sbjct: 1450 WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLE 1509

Query: 625  RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIA 684
            R+V+ HG IDLEWLR  PPDK K+YLL I GLGLKSVECVRLL+L ++AFPVD NVGRIA
Sbjct: 1510 RIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 1569

Query: 685  VRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFC 744
            VR+GWVPLQPLP  L +HLL+ YPV++ IQ +LWPRLC LDQ+TLYELHYQ+ITFGK+FC
Sbjct: 1570 VRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFC 1629

Query: 745  KKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV 804
             K  PNC ACP+RGEC+HFASA ASAR ALP P E+ + ++         PP+ +  I +
Sbjct: 1630 TKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIEL 1689

Query: 805  -IRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQ 863
             + +E    S +     NCEPIIEEP SPG +C+E  ES+I+D  ++  D +EIPT++L 
Sbjct: 1690 PLPLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYN-EDPDEIPTIKLN 1748

Query: 864  EREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 920
              +F       ME N + LQ+   S ALVAL     S+PT KLK  + LRTEH VY LPD
Sbjct: 1749 IEQFGMTLREHMERN-MELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPD 1807

Query: 921  AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSV 979
            +H LL G D+R+PDDPSPYLLAIW+PGE+ NS   P+ +C  K S K+C  E C  CNS+
Sbjct: 1808 SHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSL 1867

Query: 980  CERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRRE 1039
             E N+  VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S  PI+VPR  I +L R 
Sbjct: 1868 REANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRR 1927

Query: 1040 IVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLHCSPSK 1093
             V FG+S T++F  L   QIQ  FW+GFVCVRGF+++ R PRPL+ RLH   SK
Sbjct: 1928 TVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASK 1981
Transcriptional activator involved in gene imprinting. Catalyzes the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism. Allows the expression of the maternal copy of the imprinted MEA gene before fertilization, possibly by antagonizing or suppressing DNA methylation on target promoter. Probably acts by nicking the MEA promoter. Required for stable reproducible patterns of floral and vegetative development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 Back     alignment and function description
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 Back     alignment and function description
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1105
356537037 1903 PREDICTED: uncharacterized protein LOC10 0.844 0.490 0.442 0.0
449456184 1810 PREDICTED: uncharacterized protein LOC10 0.845 0.516 0.421 0.0
4495305361176 PREDICTED: transcriptional activator DEM 0.835 0.784 0.427 0.0
356546049 1881 PREDICTED: protein ROS1-like [Glycine ma 0.485 0.284 0.592 0.0
225449724 2198 PREDICTED: transcriptional activator DEM 0.474 0.238 0.604 0.0
449512809 1736 PREDICTED: transcriptional activator DEM 0.489 0.311 0.588 0.0
330370553 1758 repressor of gene silencing 1 [Gossypium 0.484 0.304 0.579 0.0
449465553 1679 PREDICTED: transcriptional activator DEM 0.489 0.322 0.588 0.0
296090400 1621 unnamed protein product [Vitis vinifera] 0.474 0.323 0.604 0.0
138996985 1796 repressor of silencing 1 [Nicotiana taba 0.488 0.300 0.567 0.0
>gi|356537037|ref|XP_003537037.1| PREDICTED: uncharacterized protein LOC100806794 [Glycine max] Back     alignment and taxonomy information
 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1070 (44%), Positives = 611/1070 (57%), Gaps = 137/1070 (12%)

Query: 99   QLPLQCNKADGPSNVHNAVVPYQVGPSSEHG--ALVPHQIKEKRKKLKPEVVLDPGTLRM 156
            QL L     D   +  NA+VPY+   S  HG   +VP  IK  ++ L+P+V LD  T R+
Sbjct: 850  QLNLNAEARDLAFHEENALVPYKQKNSLIHGDGVIVPFHIK--KQHLRPKVNLDDETDRV 907

Query: 157  WNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 216
            W L++ +D  +     ++ED  KWW++ER VF GR  SF ARMHL+ GDRRF  WKGSVV
Sbjct: 908  WKLLL-LDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVV 966

Query: 217  DSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTN---DHTPSDENLRTTAS----LEPIG 269
            DSVVGV+LTQNV+D+LSSSA+MSLAARFP  S++    H   D  L         +EP  
Sbjct: 967  DSVVGVFLTQNVTDHLSSSAFMSLAARFPKNSSSMCKRHHKEDTRLVVNEPQVHIVEPEE 1026

Query: 270  SNSTS----NGAVYDS---------EGNMYFVTEPE----PDRCCELKDRDDAFDSRIQR 312
            S        N +VYD           G    V   E    P     L D  ++  S + +
Sbjct: 1027 STEWDVKLLNQSVYDQTSTIDMAEHSGEKEAVNSNESCGTPSSVISLTDESNSRLSELPQ 1086

Query: 313  KALQE-----------------------NGDIKVMTDAVPSQ--------AFDTSSVQSL 341
            K ++E                       NGD K + D V SQ        + D S+ Q+ 
Sbjct: 1087 KNIKEHCSPTRSGILSATIEEGEEKSCYNGDRKELNDIVSSQGSVFSSQISGDFSNDQNP 1146

Query: 342  DRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQ 401
            ++       NS+ +V SST   N     T FS    L+  S  + +   + K++    S 
Sbjct: 1147 EKIGSCSDSNSEVEVLSSTAKYNHFGSNTSFSKL--LEMVSSTKFYEDNSQKSE----SI 1200

Query: 402  NHITQSSVTQFWP--TGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILF 459
             +     V  F P  T  ST+D+    +  +  SS+  +    Q+  T            
Sbjct: 1201 ENSGMLEVNGFDPFKTEASTSDLKKKDENGMNRSSLQTTEPAGQVAITH----------- 1249

Query: 460  CDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSIS--SSDFNDPFEISVLPSNRESFRT 517
              + +     P    N  Q S          F +IS  + D       S L   + + R 
Sbjct: 1250 -SQSIASQVHPREQSNHQQQS----------FFNISGQTQDLMQKERGSGLGEQKNATRN 1298

Query: 518  GMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLR---RI 574
            G  +   A    K   +GK K  ++                        +WD LR   + 
Sbjct: 1299 GTNEISSAPIKLKTKEQGKEKKDDF------------------------NWDSLRIDAQA 1334

Query: 575  YSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSID 634
             +   E++ + MDS+DW+AVRCAD SEIA+ IKERG  N +A RIK FLNRLVE H SID
Sbjct: 1335 KAGKREKTENTMDSLDWDAVRCADVSEIAETIKERGMNNRLAERIKNFLNRLVEEHESID 1394

Query: 635  LEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 694
            LEWLR+VPPDK KEYLL I GLGLKSVECVRLL+L H+AFPVD NVGRIAVRLGWVPLQP
Sbjct: 1395 LEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 1454

Query: 695  LPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGAC 754
            LP  L +HLL+ YPV++ IQ YLWPRLC LDQ+TLYELHYQMITFGK+FC K  PNC AC
Sbjct: 1455 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQETLYELHYQMITFGKVFCTKSKPNCNAC 1514

Query: 755  PLRGECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVN----PIPVIRIEAD 810
            P+R EC+HFASA ASARFALPGP +K IV++   + I Q+P  +++    P P    + D
Sbjct: 1515 PMRAECRHFASAFASARFALPGPEQKSIVSTTGNSVINQNPSEIISQLHLPPPENTAQED 1574

Query: 811  PVS--------ESGYQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRL 862
             +         ES ++IN C+PIIEEPR+P P+C +  ES+ D +D    D  EIPT+ L
Sbjct: 1575 EIQLTEVSRQLESKFEINICQPIIEEPRTPEPECLQ--ESQTDIEDAFYEDSSEIPTINL 1632

Query: 863  QEREFKENFPNFMEMNKVML--QDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPD 920
               EF  N  N+M+ N  +   + S ALVAL  +AAS+P  KLK    LRTEH VY LPD
Sbjct: 1633 NIEEFTLNLQNYMQENMELQGGEMSKALVALNPQAASIPMPKLKNVGRLRTEHCVYELPD 1692

Query: 921  AHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKD--SKLCNSEICYSCNS 978
             H LL+G+D R+PDDP  YLLAIW+PGE+ NS+  P+  C+S++   +LCN + C+SCNS
Sbjct: 1693 THPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESNCSSQEECGQLCNEKECFSCNS 1752

Query: 979  VCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRR 1038
              E N+ IVRGT+LIPCRTA RG FPLNGTYFQVNEVFADH++S +PI+VPR  I NL R
Sbjct: 1753 FREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPISVPRSWIWNLNR 1812

Query: 1039 EIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPRPLVNRLH 1088
              V FG+S TT+F  L  ++ Q+ FWRG++CVRGFDR  R PRPL+ RLH
Sbjct: 1813 RTVYFGTSVTTIFKGLTTQETQQCFWRGYICVRGFDREARAPRPLMARLH 1862

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449456184|ref|XP_004145830.1| PREDICTED: uncharacterized protein LOC101216331 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530536|ref|XP_004172250.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546049|ref|XP_003541444.1| PREDICTED: protein ROS1-like [Glycine max] Back     alignment and taxonomy information
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449512809|ref|XP_004164145.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|330370553|gb|AEC12446.1| repressor of gene silencing 1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|449465553|ref|XP_004150492.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1105
TAIR|locus:21844321987 DME "DEMETER" [Arabidopsis tha 0.496 0.276 0.546 2.7e-199
TAIR|locus:20449231393 DML1 "demeter-like 1" [Arabido 0.676 0.536 0.447 2.2e-189
TAIR|locus:21001381332 DML2 "demeter-like 2" [Arabido 0.584 0.484 0.461 8.9e-182
TAIR|locus:21243011044 DML3 "demeter-like protein 3" 0.504 0.534 0.473 3.3e-158
TAIR|locus:2100382293 AT3G47830 [Arabidopsis thalian 0.106 0.402 0.389 2.6e-12
TIGR_CMR|CHY_1121210 CHY_1121 "endonuclease III" [C 0.096 0.509 0.281 3.7e-05
TAIR|locus:2184432 DME "DEMETER" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1525 (541.9 bits), Expect = 2.7e-199, Sum P(3) = 2.7e-199
 Identities = 307/562 (54%), Positives = 376/562 (66%)

Query:   541 EYKSDMKND-RTKKTTPKKNSDNTVQQDWDLLRRIYSTGE---ERSHDKMDSVDWEAVRC 596
             EYK       R  K T       T Q  WD LR+     E   ER+ + MDS+D+EA+R 
Sbjct:  1424 EYKETNATILREMKGTLADGKKPTSQ--WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRR 1481

Query:   597 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 656
             A  SEI++AIKERG  N++A RIK+FL R+V+ HG IDLEWLR  PPDK K+YLL I GL
Sbjct:  1482 ASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGL 1541

Query:   657 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 716
             GLKSVECVRLL+L ++AFPVD NVGRIAVR+GWVPLQPLP  L +HLL+ YPV++ IQ +
Sbjct:  1542 GLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKF 1601

Query:   717 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPG 776
             LWPRLC LDQ+TLYELHYQ+ITFGK+FC K  PNC ACP+RGEC+HFASA ASAR ALP 
Sbjct:  1602 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPA 1661

Query:   777 PSEKGIVTSEFGNGIGQSPPLVVNPIPV-IRIEADPVSESGYQINNCEPIIEEPRSPGPQ 835
             P E+ + ++         PP+ +  I + + +E    S +     NCEPIIEEP SPG +
Sbjct:  1662 PEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRENCEPIIEEPASPGQE 1721

Query:   836 CXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALT 892
             C                     PT++L   +F       ME N + LQ+   S ALVAL 
Sbjct:  1722 CTEITESDIEDAYYNEDPDEI-PTIKLNIEQFGMTLREHMERN-MELQEGDMSKALVALH 1779

Query:   893 AEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNS 952
                 S+PT KLK  + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW+PGE+ NS
Sbjct:  1780 PTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANS 1839

Query:   953 VGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQ 1011
                P+ +C  K S K+C  E C  CNS+ E N+  VRGT+LIPCRTA RG FPLNGTYFQ
Sbjct:  1840 AQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQ 1899

Query:  1012 VNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVR 1071
             VNE+FADHE+S  PI+VPR  I +L R  V FG+S T++F  L   QIQ  FW+GFVCVR
Sbjct:  1900 VNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVR 1959

Query:  1072 GFDRRYRCPRPLVNRLHCSPSK 1093
             GF+++ R PRPL+ RLH   SK
Sbjct:  1960 GFEQKTRAPRPLMARLHFPASK 1981
GO:0003824 "catalytic activity" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0006281 "DNA repair" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0019104 "DNA N-glycosylase activity" evidence=ISS;IDA
GO:0043078 "polar nucleus" evidence=IDA
GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP
GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA
GO:0006306 "DNA methylation" evidence=RCA;IDA
TAIR|locus:2044923 DML1 "demeter-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100138 DML2 "demeter-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124301 DML3 "demeter-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100382 AT3G47830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1121 CHY_1121 "endonuclease III" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
COG0177211 COG0177, Nth, Predicted EndoIII-related endonuclea 6e-23
smart00478149 smart00478, ENDO3c, endonuclease III 3e-14
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 2e-13
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 4e-13
COG2231215 COG2231, COG2231, Uncharacterized protein related 7e-11
TIGR01083191 TIGR01083, nth, endonuclease III 1e-06
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 0.001
smart0052521 smart00525, FES, iron-sulpphur binding domain in D 0.002
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 0.002
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 98.0 bits (245), Expect = 6e-23
 Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 27/172 (15%)

Query: 590 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 649
             E +  ADE E+ + IK  G     A  IKE    L+E  G           PD  +E 
Sbjct: 60  TPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGG--------EVPDTREE- 110

Query: 650 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 709
           LL + G+G K+   V   +    A  VD +V R++ RLG VP              + P 
Sbjct: 111 LLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGLVP-------------GKTP- 156

Query: 710 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 761
            ++++  L   +    ++   +LH+ +I  G+  CK R P C  CPL   C 
Sbjct: 157 -EEVEEALMKLI---PKELWTDLHHWLILHGRYICKARKPRCEECPLADLCP 204

Length = 211
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130155 TIGR01083, nth, endonuclease III Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|197771 smart00525, FES, iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3) Back     alignment and domain information
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1105
PF15628103 RRM_DME: RRM in Demeter 100.0
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 100.0
PRK10702211 endonuclease III; Provisional 100.0
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 100.0
PRK10880350 adenine DNA glycosylase; Provisional 100.0
TIGR01083191 nth endonuclease III. This equivalog model identif 100.0
PRK13910289 DNA glycosylase MutY; Provisional 100.0
COG2231215 Uncharacterized protein related to Endonuclease II 99.97
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.97
KOG1921286 consensus Endonuclease III [Replication, recombina 99.96
COG1194342 MutY A/G-specific DNA glycosylase [DNA replication 99.95
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.93
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.92
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.87
KOG2457555 consensus A/G-specific adenine DNA glycosylase [Re 99.84
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 99.83
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 99.8
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.74
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 99.7
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 99.65
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.59
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 99.58
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 98.9
PF1562932 Perm-CXXC: Permuted single zf-CXXC unit 98.86
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.09
PF1057617 EndIII_4Fe-2S: Iron-sulfur binding domain of endon 96.39
PF09674232 DUF2400: Protein of unknown function (DUF2400); In 95.6
smart0052526 FES FES domain. iron-sulpphur binding domain in DN 95.42
TIGR02757229 conserved hypothetical protein TIGR02757. Members 94.67
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 88.04
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 87.91
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 87.24
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 82.09
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 81.62
TIGR0042669 competence protein ComEA helix-hairpin-helix repea 81.07
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 80.86
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 80.66
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 80.55
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 80.12
>PF15628 RRM_DME: RRM in Demeter Back     alignment and domain information 
Probab=100.00  E-value=4.6e-69  Score=497.45  Aligned_cols=103  Identities=67%  Similarity=1.197  Sum_probs=102.1

Q ss_pred             eeEEeecccccCCCCCCCccceeeeeeeeccCCCCCCcccchhhhhcccceeEEecCchhhhhcccCHHHHHHHHhhcce
Q 001299          989 GTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFV 1068 (1105)
Q Consensus       989 gTiLiPCRTAmrG~FPLNGTYFQvNEVFaDh~SS~~PI~Vpr~~iw~L~rr~VYfGtSv~sIfkglt~~~Iq~cF~~G~v 1068 (1105)
                      |||||||||||||+|||||||||||||||||+||+|||+|||+|||+|+||+|||||||+|||||||++|||+|||+|||
T Consensus         1 gtiLiPCrtAmrg~FPLnGTYFQ~nEVFaD~~Ss~~Pi~vpr~~iw~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~G~V   80 (103)
T PF15628_consen    1 GTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSRNPIDVPRELIWNLPRRIVYFGTSVSSIFRGLSREEIQQCFWKGFV   80 (103)
T ss_pred             CceEeeehhhhCCccccCceEEEEEEEEeccccccCCeeccHHHhhcCCceEEEecCcHHHHhcccCHHHHHHHHhcCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccCCCcccccccccCC
Q 001299         1069 CVRGFDRRYRCPRPLVNRLHCSP 1091 (1105)
Q Consensus      1069 CVR~fdr~tr~PrpL~~rlh~~~ 1091 (1105)
                      |||||||+||+||||++|||+++
T Consensus        81 CVR~FDr~Tr~PrpL~~rLH~~~  103 (103)
T PF15628_consen   81 CVRGFDRKTRAPRPLCARLHFPA  103 (103)
T ss_pred             EEeecccccCCCcchhhhccCCC
Confidence            99999999999999999999985

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF15629 Perm-CXXC: Permuted single zf-CXXC unit Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4 Back     alignment and domain information
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides Back     alignment and domain information
>smart00525 FES FES domain Back     alignment and domain information
>TIGR02757 conserved hypothetical protein TIGR02757 Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region Back     alignment and domain information
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
1orn_A226 Structure Of A Trapped Endonuclease Iii-Dna Covalen 2e-04
1p59_A226 Structure Of A Non-Covalent Endonuclease Iii-Dna Co 4e-04
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent Intermediate: Estranged-Guanine Complex Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 641 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 700
           VP D+  + L+ + G+G K+   V  ++    A  VD +V R++ RLG+        ++ 
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 701 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 760
             L+K  P                 ++     H++MI FG+  CK +SP C +CPL   C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 761 K 761
           +
Sbjct: 209 R 209
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 8e-24
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 7e-12
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 3e-11
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 3e-10
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 5e-10
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 5e-06
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 5e-05
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 Back     alignment and structure
 Score =  100 bits (250), Expect = 8e-24
 Identities = 30/189 (15%), Positives = 69/189 (36%), Gaps = 16/189 (8%)

Query: 560 SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRI 619
               V +  + L+  +    +      D ++ + +   + S++A+ ++  G  N  A R+
Sbjct: 44  KFEAVLKSLENLKNAFILEND------DEINLKKIAYIEFSKLAECVRPSGFYNQKAKRL 97

Query: 620 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 679
            +    +++   S       N   +  +E+LLD +G+G +S + +   +       VD  
Sbjct: 98  IDLSGNILKDFQS-----FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKY 152

Query: 680 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY-ELHYQMIT 738
                 +LG         +L     K     + +   L      +    LY   H +++ 
Sbjct: 153 SYLFLKKLGIEI--EDYDELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVE 208

Query: 739 FGKIFCKKR 747
           F K   + +
Sbjct: 209 FSKQKLELK 217
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1105
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 100.0
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 100.0
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 100.0
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 100.0
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 100.0
3fsp_A369 A/G-specific adenine glycosylase; protein-DNA comp 100.0
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.96
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 99.92
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.9
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 99.9
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 99.9
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.9
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 99.89
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 99.88
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 99.86
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.86
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 99.84
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 99.83
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.82
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 81.78
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 81.03
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-37  Score=324.28  Aligned_cols=183  Identities=23%  Similarity=0.313  Sum_probs=167.7

Q ss_pred             cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299          552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG  631 (1105)
Q Consensus       552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G  631 (1105)
                      .+...++++||+|||+|+++.+++.+|..      .||||++|+.++.++|+++|+++||+++||++|+++|+.+.++|+
T Consensus        32 ~pfe~Lv~~IlsQqts~~~v~~~~~~l~~------~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~  105 (226)
T 1orn_A           32 NPFELLIAVVLSAQCTDALVNKVTKRLFE------KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYN  105 (226)
T ss_dssp             SHHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHhCCCcHHHHHHHHHHHHH------HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Confidence            35566899999999999999999999964      489999999999999999999999999999999999999999887


Q ss_pred             CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHhhCCchh
Q 001299          632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD  711 (1105)
Q Consensus       632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~~e  711 (1105)
                      +       .+|..  +++|++|||||+|||++||+|+||+++||||+||.|++.|+|+++...++++++..+++++|   
T Consensus       106 g-------~~p~~--~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p---  173 (226)
T 1orn_A          106 G-------EVPRD--RDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP---  173 (226)
T ss_dssp             T-------SCCSC--HHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC---
T ss_pred             C-------CcHHH--HHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcC---
Confidence            7       46655  89999999999999999999999999999999999999999998756789999999998887   


Q ss_pred             hhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhhh
Q 001299          712 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA  766 (1105)
Q Consensus       712 ~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas~  766 (1105)
                         +           +.+.+||.+||+||+.+|++++|+|+.|||++.|++|...
T Consensus       174 ---~-----------~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~  214 (226)
T 1orn_A          174 ---K-----------EEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR  214 (226)
T ss_dssp             ---G-----------GGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred             ---h-----------hhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence               1           2456999999999999999999999999999999998775
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1105
d1pu6a_217 a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III 3e-20
d1orna_214 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 2e-10
d1kg2a_224 a.96.1.2 (A:) Catalytic domain of MutY {Escherichi 2e-10
d2abka_211 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 1e-09
d1keaa_217 a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Me 9e-09
d1rrqa1221 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacil 1e-08
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 4e-07
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

 Score = 88.3 bits (218), Expect = 3e-20
 Identities = 29/189 (15%), Positives = 69/189 (36%), Gaps = 16/189 (8%)

Query: 560 SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRI 619
               V +  + L+  +    +      D ++ + +   + S++A+ ++  G  N  A R+
Sbjct: 43  KFEAVLKSLENLKNAFILEND------DEINLKKIAYIEFSKLAECVRPSGFYNQKAKRL 96

Query: 620 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 679
            +    +++       +   N   +  +E+LLD +G+G +S + +   +       VD  
Sbjct: 97  IDLSGNILKDF-----QSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKY 151

Query: 680 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY-ELHYQMIT 738
                 +LG         +L     K     + +   L      +    LY   H +++ 
Sbjct: 152 SYLFLKKLGIEI--EDYDELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVE 207

Query: 739 FGKIFCKKR 747
           F K   + +
Sbjct: 208 FSKQKLELK 216
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Length = 224 Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Length = 217 Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Length = 221 Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1105
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 100.0
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 100.0
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 100.0
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.85
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 99.82
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.78
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 87.76
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 86.89
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 86.66
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 85.64
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 85.02
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 84.39
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 83.34
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 82.42
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 80.31
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-39  Score=333.58  Aligned_cols=181  Identities=21%  Similarity=0.214  Sum_probs=167.1

Q ss_pred             cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299          552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG  631 (1105)
Q Consensus       552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G  631 (1105)
                      .+...+|++||+|||+|+++.+++.+|..      .+++|++|+.|+.++|+++|+++|||++||++|+++|+.|+++||
T Consensus        28 ~p~~vli~~iLsqqT~~~~v~~~~~~l~~------~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~  101 (211)
T d2abka_          28 SPFELLIAVLLSAQATDVSVNKATAKLYP------VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN  101 (211)
T ss_dssp             SHHHHHHHHHHTTTSCHHHHHHHHHHHTT------TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhccchHHHHHHHHHHHHH------hccChHHHHhhhHhHhHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Confidence            35667899999999999999999999963      579999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHhhCCchh
Q 001299          632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD  711 (1105)
Q Consensus       632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~~e  711 (1105)
                      |       .+|.+  +++|++|||||+|||++||+|+||+|+|+||+||.||+.|+|+++. .++.+++..+.+++|   
T Consensus       102 g-------~~p~~--~~~L~~LpGVG~~TA~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~-~~~~~~~~~~~~~~p---  168 (211)
T d2abka_         102 G-------EVPED--RAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVP---  168 (211)
T ss_dssp             T-------SCCSC--HHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCC-SSHHHHHHHHHHHSC---
T ss_pred             C-------chhHH--HHHHHHHHhhchHHHHHHHHHHhcCccccccHHHHHHHHHhccCcc-chhhHHHHHHhhcCc---
Confidence            8       68888  8999999999999999999999999999999999999999999874 578888888888887   


Q ss_pred             hhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhh
Q 001299          712 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFAS  765 (1105)
Q Consensus       712 ~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas  765 (1105)
                         ...|           +++|++||+||+.+|++++|+|+.|||++.|+||.+
T Consensus       169 ---~~~~-----------~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~~~k  208 (211)
T d2abka_         169 ---AEFK-----------VDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK  208 (211)
T ss_dssp             ---GGGT-----------TTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred             ---cccH-----------HHHHHHHHHHhhhhccCCCCCCCCCCCcccCCCcCc
Confidence               3334           489999999999999999999999999999999875
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure