Citrus Sinensis ID: 001381

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------109

MEEVIFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHccHHHHHHHHHcccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHcc

ccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHcccccccccccHcHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHcEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHcc

MEEVIfsqeedelDCKEIVLQKYFLQEWKIVKSLLDEIVsygrvpdtssvHKIRSIMDKYQeqgqlvepyLENIVSPLMSIIRSKtielgadsdEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKChdtasvtslrqestgemEAKCVILLWLSILVLvpfdissvdtsiannenlgqnepapLVMRILGFCKDYLSNAGPMRTIAGLLLAKlltrpdmptaFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDAStmlksgsaarsPLLRKYLMKLTQRlgltclprctsaWRYVIRTSslgenmssraafreidqcDHSVVDSLkseqnrncpedegmdvpDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLElfspgegdgswhgGCLALAELARRglllpsslpkvVPVIVKALHYdirrgshsvgshvRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQEnvgrqgnyphgidivntaDYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFIlekltpftlstdlctrhgatLAAGEVVLALCKYdyalpadkqkivagivpgiekarlyrgkggEIMRSAVSRFIECISLsfvslpekTKRSLLDTLNenlrhpnsqIQNAAVKALKPFVQTYMVAADSGVVGGISLKYmeqltdpnpairrgsalalgvLPYELLANSWRDVLLKLCSCClieenpedrdteARVNAVRGLVSVCETLTQsqenslihsgedEISLFHLIKNEVMTSLFKAlddysvdnrgdvgsWVREAAVDGLEICTYILckrdfvpspekpqevkselpgnvtaekTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNktifvpiphrekleeivpneadlnwgvpafsyprfVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQagetedldarssreYMLYNDILWVLQHyrrcdrviVPTLKVHKLLLKD

meevifsqeedeldcKEIVLQKYFLQEWKIVKSLLDEIVSygrvpdtssvhKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTslrqestgeMEAKCVILLWLSILVLVPFDISSVDTSIAnnenlgqnepAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDAstmlksgsaarspLLRKYLMKLTQRLGltclprctsaWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSlkseqnrncpedegmdvPDILEEIIEILlsglrdtdTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRrgshsvgshvrDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFqenvgrqgnypHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYAlpadkqkivagivpgiekARLYRGKGGEIMRSAVSRFIECISLsfvslpekTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEenpedrdtearVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYnktifvpiphreKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGetedldarssrEYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

MEEVIFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEilkiikpiciiiYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCvillwlsilvlvPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDileeiieillSGLRDTDTVVRWSAAKGIGRITSCLTsslseevfssvlelfsPGEGDGSWHggclalaelarrglllpsslpkvvpvivkALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVlrelaaealsalVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRvllsglvisigglQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

************LDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSL******EMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSL***************************************VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKT***LLDT***********IQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEE********ARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFV*****************TAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLL**

**********DELDCKEIVLQKYFLQEWKIVKSLLDE**********SSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHD**********STGEMEAKCVILLWLSILVLVPFDISSVDTSIAN*******EPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRA************************PEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRD**********VKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAG*******RSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

**********DELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVP***********LPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

*******Q***ELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTA*********TGEMEAKCVILLWLSILVLVPFDISSVDTS**********EPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSS******************************GMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFV************L*G*VTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MEEVIFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIxxxxxxxxxxxxxxxxxxxxxILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1089	2.2.26 [Sep-21-2011]
Q5ZI87		1019	Tubulin-specific chaperon	yes	no	0.834	0.892	0.380	1e-168
Q9BTW9		1192	Tubulin-specific chaperon	yes	no	0.872	0.796	0.363	1e-167
Q28205		1199	Tubulin-specific chaperon	yes	no	0.879	0.798	0.360	1e-165
Q8BYA0		1196	Tubulin-specific chaperon	yes	no	0.880	0.801	0.365	1e-165
Q55G93		1480	Tubulin-specific chaperon	yes	no	0.294	0.216	0.393	3e-66
Q10197		1105	Tubulin-folding cofactor	yes	no	0.469	0.462	0.262	2e-44
P40987		1014	Chromosome instability pr	yes	no	0.153	0.164	0.251	8e-07

>sp\|Q5ZI87\|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gallus GN=TBCD PE=2 SV=1	Back alignment and function desciption

 Score =  593 bits (1529), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 385/1012 (38%), Positives = 548/1012 (54%), Gaps = 103/1012 (10%)

Query: 50   VHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYT 109
            V K   IMDKYQEQ  L++ +LE +++ L+ IIR        DS     +       +Y 
Sbjct: 58   VEKFIVIMDKYQEQPHLLDRHLEWMMNMLLDIIR--------DSGSPPVLFHLAFKFLYI 109

Query: 110  LVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSI 169
            +  V GYK  ++ FPH+V+DL+  + +         +     +     E + ++LLWLS+
Sbjct: 110  ITKVRGYKLFLRLFPHEVTDLQPVLDM---------IVDQNPKDCETWETRYMLLLWLSM 160

Query: 170  LVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLT 229
            + L+PFD++  D +I + E    +   P + RIL   K YL  +   R  A +L++K + 
Sbjct: 161  ICLIPFDLARFDGNILSEEG---HTRMPTMDRILEIAKCYLVVSDKARDAAAVLVSKFIV 217

Query: 230  RPDM-PTAFASFVEWTHEVLSSVTDDVMNHFRLL-GVVEALAAIFKAGGRKVLLDVIPVV 287
            RPD+     A F++WT  +LS  +   M    ++ G+++ALA +FK G R+   D +P  
Sbjct: 218  RPDVRQKRMADFLDWTLSMLSKSSFQSMEGTVVMNGMLQALAQLFKHGKRE---DCLPY- 273

Query: 288  WNDASTMLK-----SGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENM 342
               A+T+L+       S +   +LRK  MKL QRLGLT +    + WRY     SL  N+
Sbjct: 274  ---AATVLECLDNCKLSESNQMVLRKLGMKLVQRLGLTFVKPKVAKWRYQRGCRSLAANL 330

Query: 343  SSRAAFREIDQCDHSVVDSLKSEQNRNCPED-EGMDVPDILEEIIEILLSGLRDTDTVVR 401
                      Q   SV+ S K     N  ED E  D+P  +E ++E LL GL+D DT+VR
Sbjct: 331  ----------QAQSSVMQSQKITVAANEAEDDEEYDIPGEIENVVEQLLVGLKDKDTIVR 380

Query: 402  WSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSL 461
            WSAAKGIGRIT  L   L+++V  S+L+ FS  E D +WHGGCLALAEL RRGLLLPS +
Sbjct: 381  WSAAKGIGRITGRLPKELADDVVGSLLDCFSFQETDNAWHGGCLALAELGRRGLLLPSRI 440

Query: 462  PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTV 521
              VVPVI+KAL YD +RGS SVGS++RDAA Y+ WAF RAY  +++   + QI+  L+  
Sbjct: 441  SDVVPVILKALTYDEKRGSCSVGSNLRDAACYLSWAFARAYDPSELIPFINQISSALVIA 500

Query: 522  ACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYE 581
            A +DR+VNCRRAA+AAFQENVGRQG +PHGIDI+  ADYF++ +RV  YL ++V+IA + 
Sbjct: 501  AVFDRDVNCRRAASAAFQENVGRQGTFPHGIDILTAADYFAVGNRVNCYLTISVYIAGFP 560

Query: 582  GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCT 641
             Y  P +D L+  KI HWD V+REL+ +AL  L    PEY AN +L +L P ++ TDL T
Sbjct: 561  EYTQPMIDHLVNMKINHWDSVIRELSTKALHNLTPRAPEYMANVVLPRLLPLSVGTDLHT 620

Query: 642  RHGATLAAGEVVLALCKY--------DYALPADKQKIVAGIVPGIEKARLYRGKGGEIMR 693
            RHGA LA  E+  ALCK          Y       + +  I   +   +LYRG GGE+MR
Sbjct: 621  RHGAILACAEITHALCKLAEENNRSITYYFNGKSLEGLKQIHQELCSRQLYRGLGGELMR 680

Query: 694  SAVSRFIECISLSFVSLPEKTKRSLLD---TLNENLRH-------PNSQIQNAAVKALKP 743
             AV   IE +SLS   +P K    +      +N++LR            ++ +AV AL  
Sbjct: 681  PAVCTLIEKLSLS--KMPFKGDPIIEGWQWLINDSLRSLPLASCAARQHVKESAVSALSA 738

Query: 744  FVQTYMV----AADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVL 799
                Y +     AD  + G +  +Y+ +L      IR G +LALG LP  LL    + VL
Sbjct: 739  LCNEYYINENGEADPALQGELVTQYISELQSTEQMIRCGFSLALGALPRFLLKGRLQQVL 798

Query: 800  LKLCSCCLIEENPEDRD-TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKN 858
              L    LI   P D    E+R +A+  +  +C+T+    E      G  E  +      
Sbjct: 799  EGLRKVTLI--TPRDVSFAESRRDALIAIAEICQTVGVKGE------GSQEEYICKDNVA 850

Query: 859  EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELP 918
            ++  +L   + DY+ D+RGDVG WVREAA+  L   T +L                    
Sbjct: 851  QIYATLLNCVTDYTTDSRGDVGGWVREAAMTSLMKVTLLL-------------------- 890

Query: 919  GNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPHREK 977
              V  E  L +AN+   ++  + +Q+ EK+DK R  A  V   +L+  +  VP IPHRE+
Sbjct: 891  --VQNEAELINANICKQIMCWLAQQSAEKIDKFRAHAGSVFLTLLHFDSPPVPHIPHREE 948

Query: 978  LEEIVP-NEAD-LNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQES 1027
            LE I P +EA+ LNW   + ++PR   LL    Y   +L GL +S+GGL E+
Sbjct: 949  LERIFPRSEAETLNWNAASEAFPRITQLLALPAYQYYVLLGLSVSVGGLTET 1000

Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubule dynamics by capturing GTP-bound beta-tubulin (TUBB). Increases degradation of beta tubulin, when overexpressed in polarized cells. Induces tight adherens and tight junctions disassembly at the lateral cell membrane.
Gallus gallus (taxid: 9031)

>sp\|Q9BTW9\|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2	Back alignment and function description

>sp\|Q28205\|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus GN=TBCD PE=1 SV=1	Back alignment and function description

>sp\|Q8BYA0\|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1	Back alignment and function description

>sp\|Q55G93\|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyostelium discoideum GN=tbcd PE=3 SV=2	Back alignment and function description

>sp\|Q10197\|ALP1_SCHPO Tubulin-folding cofactor D OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp1 PE=1 SV=3	Back alignment and function description

>sp\|P40987\|CIN1_YEAST Chromosome instability protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CIN1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1089
255541236		1260	beta-tubulin cofactor d, putative [Ricin	0.987	0.853	0.779	0.0
359489443		1269	PREDICTED: tubulin-specific chaperone D	0.979	0.840	0.778	0.0
296089188		1255	unnamed protein product [Vitis vinifera]	0.972	0.843	0.781	0.0
224129966		1253	tubulin folding cofactor [Populus tricho	0.988	0.859	0.760	0.0
356534400		1266	PREDICTED: tubulin-specific chaperone D-	0.990	0.852	0.727	0.0
356574161		1257	PREDICTED: tubulin-specific chaperone D-	0.988	0.856	0.727	0.0
449454646		1270	PREDICTED: tubulin-specific chaperone D-	0.985	0.844	0.724	0.0
359489441		1228	PREDICTED: tubulin-specific chaperone D	0.942	0.835	0.744	0.0
186511249		1254	armadillo/beta-catenin-like repeat-conta	0.970	0.842	0.728	0.0
7329684		1249	beta-tubulin cofactor-like protein [Arab	0.960	0.837	0.731	0.0

>gi\|255541236\|ref\|XP_002511682.1\| beta-tubulin cofactor d, putative [Ricinus communis] gi\|223548862\|gb\|EEF50351.1\| beta-tubulin cofactor d, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1698 bits (4398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 847/1086 (77%), Positives = 953/1086 (87%), Gaps = 11/1086 (1%)

Query: 8    QEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLV 67
            +E+DE   KE VLQKYFLQEWK+VKSLLD+IV  GRV D+SSV+KIRSI+DKYQ++GQL+
Sbjct: 14   EEDDEHGSKERVLQKYFLQEWKLVKSLLDDIVLNGRVTDSSSVNKIRSILDKYQQEGQLL 73

Query: 68   EPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQV 127
            EPYLE IV+PLMSI+R+KTI+LG  ++EIL++IKPICIIIY LVTVCGYK+VIKFFPHQV
Sbjct: 74   EPYLETIVTPLMSIVRTKTIDLGVATNEILEVIKPICIIIYCLVTVCGYKSVIKFFPHQV 133

Query: 128  SDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANN 187
            SDLELAVSLLEKCHDTAS TSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIAN+
Sbjct: 134  SDLELAVSLLEKCHDTASATSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANS 193

Query: 188  EN-LGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHE 246
             N LG+ EPAPLV+R+L F KDYLSNAGPMRT+AGLLL+KLLTRPDMP AF SF EWTHE
Sbjct: 194  SNDLGKLEPAPLVLRMLKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPLAFTSFTEWTHE 253

Query: 247  VLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLL 306
            VLSS TDDVM+HF+LLGVVEALAAIFKAGGRKVLLDV+P+VWND S+M+KSG AARSPLL
Sbjct: 254  VLSSGTDDVMSHFQLLGVVEALAAIFKAGGRKVLLDVVPIVWNDTSSMVKSGYAARSPLL 313

Query: 307  RKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQ 366
            RKYL+KLTQR+GLTCLP  + AW YV RTSSL EN+S  A+ RE  Q  +  V+S + E+
Sbjct: 314  RKYLVKLTQRIGLTCLPHRSPAWCYVGRTSSLRENVSVSASKREWSQGMN--VNSTEPEE 371

Query: 367  NRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSS 426
              +  ++E MDVP+I+EEIIEILLSGLRDTDTVVRWSAAKG+GRITS LTS L EEV SS
Sbjct: 372  IADYMQEEDMDVPEIVEEIIEILLSGLRDTDTVVRWSAAKGVGRITSRLTSVLLEEVLSS 431

Query: 427  VLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSH 486
            VLELFSPGEGDGSWHG CLALAELARRGLLLP+ LPKVVP +VKALHYDIRRG HSVGSH
Sbjct: 432  VLELFSPGEGDGSWHGACLALAELARRGLLLPAGLPKVVPFVVKALHYDIRRGPHSVGSH 491

Query: 487  VRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQG 546
            VRDAAAYVCWAFGRAY HTDMRN+LEQ+APHLLTVACYDREVNCRRAAAAAFQENVGRQG
Sbjct: 492  VRDAAAYVCWAFGRAYYHTDMRNVLEQLAPHLLTVACYDREVNCRRAAAAAFQENVGRQG 551

Query: 547  NYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLREL 606
            NYPHGIDIVN ADYFSLSSRV SYLHVAV +AQYEGYLYPF +ELLYNKI HWDK LREL
Sbjct: 552  NYPHGIDIVNIADYFSLSSRVNSYLHVAVSVAQYEGYLYPFAEELLYNKIGHWDKSLREL 611

Query: 607  AAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD 666
            AAEALSALVKYDPEYFA+F+LEK+ PFTLS+DLC RHGATLA GEVVLAL ++DY L +D
Sbjct: 612  AAEALSALVKYDPEYFASFVLEKMIPFTLSSDLCMRHGATLAVGEVVLALHQHDYTLASD 671

Query: 667  KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENL 726
            +Q  VAGIVP IEKARLYRGKGGEIMRSAVSRFIECISL  ++L EK K SLLDTLN+N+
Sbjct: 672  RQNSVAGIVPAIEKARLYRGKGGEIMRSAVSRFIECISLCHLTLTEKIKSSLLDTLNDNM 731

Query: 727  RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786
            RHPNSQIQNAAVKAL+ FVQ Y+V+  SG  GGI+ KY+EQLTD N A+RRGSALALGVL
Sbjct: 732  RHPNSQIQNAAVKALEHFVQAYLVSGKSGGAGGITSKYLEQLTDQNVAVRRGSALALGVL 791

Query: 787  PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSG 846
            PYE LA+ W+ VLLKLCS CLIE++PEDRD EARVNAV+GL+SVC+TLT+++E S I SG
Sbjct: 792  PYECLADQWKYVLLKLCSSCLIEDDPEDRDAEARVNAVKGLISVCKTLTRARECSDICSG 851

Query: 847  EDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPS 906
            ED +SL+HLIKNEVM+SLFKALDDYSVDNRGDVGSWVREAA++GLE CT+ILC  D   S
Sbjct: 852  EDRMSLWHLIKNEVMSSLFKALDDYSVDNRGDVGSWVREAAMEGLETCTFILCLMD---S 908

Query: 907  PEKPQEVKS--ELPGNVTAEKTL--FDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962
              K   V+S  E+P     E+ L  FDANLAT ++  IVKQAVEKMDK+REAAAKVL+RI
Sbjct: 909  ARKSNRVQSLLEMPEGAENEQRLLFFDANLATQVIEVIVKQAVEKMDKIREAAAKVLQRI 968

Query: 963  LYNKTIFVP-IPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISI 1021
            LYNKTIFVP IPHREKLEE+VPNEADL W VP  SYPRF+ LL+FSCYSR +LSGLV+SI
Sbjct: 969  LYNKTIFVPFIPHREKLEEVVPNEADLQWSVPTISYPRFIQLLQFSCYSRAVLSGLVVSI 1028

Query: 1022 GGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLK 1081
            GGLQ+SLRKASISALL+YLQA ETED + R SREYM+  DILWVLQ Y++CDRVIVPTLK
Sbjct: 1029 GGLQDSLRKASISALLDYLQAVETEDPNERRSREYMVSADILWVLQQYKKCDRVIVPTLK 1088

Query: 1082 VHKLLL 1087
              ++L 
Sbjct: 1089 TIEILF 1094

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359489443\|ref\|XP_002274584.2\| PREDICTED: tubulin-specific chaperone D isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089188\|emb\|CBI38891.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129966\|ref\|XP_002320715.1\| tubulin folding cofactor [Populus trichocarpa] gi\|222861488\|gb\|EEE99030.1\| tubulin folding cofactor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356534400\|ref\|XP_003535743.1\| PREDICTED: tubulin-specific chaperone D-like [Glycine max]	Back alignment and taxonomy information

>gi\|356574161\|ref\|XP_003555220.1\| PREDICTED: tubulin-specific chaperone D-like [Glycine max]	Back alignment and taxonomy information

>gi\|449454646\|ref\|XP_004145065.1\| PREDICTED: tubulin-specific chaperone D-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359489441\|ref\|XP_003633922.1\| PREDICTED: tubulin-specific chaperone D isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|186511249\|ref\|NP_191633.3\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi\|20514263\|gb\|AAM22960.1\|AF486851_1 tubulin folding cofactor D [Arabidopsis thaliana] gi\|332646581\|gb\|AEE80102.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|7329684\|emb\|CAB82678.1\| beta-tubulin cofactor-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1089
TAIR\|locus:2101856		1254	TTN1 "TITAN 1" [Arabidopsis th	0.978	0.850	0.621	0.0
UNIPROTKB\|F1RZZ1		1198	TBCD "Uncharacterized protein"	0.687	0.625	0.343	1.9e-120
UNIPROTKB\|E1BU18		1199	TBCD "Tubulin-specific chapero	0.781	0.709	0.333	1.2e-119
UNIPROTKB\|H9GWC8		1138	TBCD "Uncharacterized protein"	0.729	0.697	0.317	2.2e-119
UNIPROTKB\|Q5ZI87		1019	TBCD "Tubulin-specific chapero	0.762	0.814	0.336	6.7e-119
MGI\|MGI:1919686		1196	Tbcd "tubulin-specific chapero	0.741	0.675	0.331	9.9e-114
UNIPROTKB\|Q28205		1199	TBCD "Tubulin-specific chapero	0.751	0.682	0.312	2.1e-107
UNIPROTKB\|Q9BTW9		1192	TBCD "Tubulin-specific chapero	0.782	0.714	0.307	2e-102
FB\|FBgn0027509		1189	CG7261 [Drosophila melanogaste	0.676	0.619	0.314	6.8e-95
WB\|WBGene00008887		1232	F16D3.4 [Caenorhabditis elegan	0.767	0.678	0.250	1.4e-50

TAIR\|locus:2101856 TTN1 "TITAN 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3279 (1159.3 bits), Expect = 0., P = 0.
 Identities = 673/1082 (62%), Positives = 786/1082 (72%)

Query:     5 IFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQG 64
             I  +E+DE D KE VLQ+YFLQEWK+VKSLLD+IVS GRV D +SVHKIRSIMDKYQEQG
Sbjct:    21 IEEEEDDEHDSKERVLQRYFLQEWKLVKSLLDDIVSNGRVVDPTSVHKIRSIMDKYQEQG 80

Query:    65 QLVEPYLENIVSPLMSIIRSKTIELGADSDEXXXXXXXXXXXXYTLVTVCGYKAVIKFFP 124
             QLVEPYLE+IVSPLM IIRSKT++L A  DE            Y LVTVCGYKAVIKFFP
Sbjct:    81 QLVEPYLESIVSPLMFIIRSKTVDLEAKPDEILEIIKPISIIIYALVTVCGYKAVIKFFP 140

Query:   125 HQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTSI 184
             HQVSDLELAV LLEKCH T SV++LRQESTGEMEAKC            PFDISSVDTSI
Sbjct:   141 HQVSDLELAVLLLEKCHSTNSVSALRQESTGEMEAKCVTLLWLSILVLVPFDISSVDTSI 200

Query:   185 ANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWT 244
             A+++  G ++ APLV++ILGFCKDYL +AGPMR I+GLLL+KLLTRPDM  AF+SF EWT
Sbjct:   201 ADDKTFGVDDLAPLVLKILGFCKDYLCSAGPMRRISGLLLSKLLTRPDMGKAFSSFFEWT 260

Query:   245 HEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSP 304
             +EVLS   D V NHFRLLGV+EAL+AIFK   RKVLLDV+P+V ND + + KS +AA+S 
Sbjct:   261 YEVLSCKEDSVTNHFRLLGVMEALSAIFKTASRKVLLDVLPIVLNDVTVLSKSNAAAKSS 320

Query:   305 LLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKS 364
             LLRKYL+KLTQR+GL CLP  + +WRYV +T+SL ENMS+ ++ R     DH+V   L+ 
Sbjct:   321 LLRKYLIKLTQRIGLVCLPHRSPSWRYVAQTASLSENMSTSSSQRLAP--DHTVTAILQP 378

Query:   365 EQNRNCPEDEGMDVPDXXXXXXXXXXSGLRDTDTVVRWSAAKGIGRITSCLTXXXXXXXX 424
             E + +  EDE MDVP+          SGLRDTDTVVRWSAAKGIGR+TS LT        
Sbjct:   379 E-SLDDQEDEDMDVPEILEEIIEMLLSGLRDTDTVVRWSAAKGIGRVTSRLTSVLSDEVL 437

Query:   425 XXXXXXXXPGEGDGSWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHYDIRRGSHSVG 484
                     PGEGDGSWH                             ALHYD+RRG HSVG
Sbjct:   438 SSVLELFSPGEGDGSWHGGCLALAELARRGLLLPRSFPLVVPVIVKALHYDVRRGPHSVG 497

Query:   485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544
             SHVRDAAAYVCWAFGRAY H DM+N+L+Q+AP LL V  +DREVNCRRAAAAAFQENVGR
Sbjct:   498 SHVRDAAAYVCWAFGRAYSHKDMKNVLDQLAPDLLIVGSFDREVNCRRAAAAAFQENVGR 557

Query:   545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVXX 604
             QGNYPHGIDIV+ ADYFSLSSRV SYL VAV IAQYEGYLYPFVDELLYNKICHWDK   
Sbjct:   558 QGNYPHGIDIVSIADYFSLSSRVNSYLQVAVSIAQYEGYLYPFVDELLYNKICHWDKSLR 617

Query:   605 XXXXXXXXXXVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALP 664
                       VKY+P++FAN++LEKL P TLSTDLC RHGATLAAGEVVLAL +  Y L 
Sbjct:   618 ELAAEALAPLVKYEPKHFANYVLEKLIPCTLSTDLCMRHGATLAAGEVVLALHQCGYVLS 677

Query:   665 ADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNE 724
             AD QK +AGIVP IEKARLYRGKGGEIMR AVSRFIECISLS V+L E+T+R LLDTL E
Sbjct:   678 ADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTLAERTERILLDTLTE 737

Query:   725 NLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALG 784
             NLRHPNSQIQNAAV A+K  VQ+Y+V  D   V  I LK+++ LTDPN A+RRGSALALG
Sbjct:   738 NLRHPNSQIQNAAVSAVKQLVQSYLVGNDKKSVDLI-LKHLKHLTDPNVAVRRGSALALG 796

Query:   785 VLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIH 844
             VLPYELL   W+D++LKLCS C IE NPEDRD EARVNAV+GL SVCETLTQ + +    
Sbjct:   797 VLPYELLTAKWKDIVLKLCSACKIEVNPEDRDAEARVNAVKGLTSVCETLTQKRASD--- 853

Query:   845 SGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFV 904
              G D++SLF LIK EVM +L KALDDYSVDNRGDVGSWVREAAV GLE CTYILCK+   
Sbjct:   854 PGNDDLSLFLLIKTEVMDTLLKALDDYSVDNRGDVGSWVREAAVHGLEKCTYILCKKMET 913

Query:   905 PSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILY 964
              S     +  S L      +  L    +   L  G+ K  ++K+ +   AA  + R + +
Sbjct:   914 YSEGDYNDDTSSL-----FDSNLATRLIGGMLKQGVEK--MDKLRET--AAKVLQRILYH 964

Query:   965 NKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRXXXXXXXXXXXXX 1024
                    +P+REKLEEI+PN+A+L W VPAFS+PRFV LL+  CYS+             
Sbjct:   965 KSVSVPHVPYREKLEEILPNKANLQWAVPAFSFPRFVQLLKLRCYSKEVMSGLVISIGGL 1024

Query:  1025 QESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHK 1084
             Q+SLRKAS+ ALLEY++ GE +D   + SRE  L +DILW+LQ Y++CDRV+VP L+  +
Sbjct:  1025 QDSLRKASLVALLEYMREGEAKDPKEQQSRESALGDDILWILQEYKKCDRVMVPCLQTIE 1084

Query:  1085 LL 1086
             +L
Sbjct:  1085 IL 1086

GO:0005737 "cytoplasm" evidence=ISM

GO:0007017 "microtubule-based process" evidence=RCA;IMP

GO:0000910 "cytokinesis" evidence=IGI;RCA

GO:0006457 "protein folding" evidence=ISS

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

UNIPROTKB\|F1RZZ1 TBCD "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BU18 TBCD "Tubulin-specific chaperone D" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|H9GWC8 TBCD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZI87 TBCD "Tubulin-specific chaperone D" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1919686 Tbcd "tubulin-specific chaperone d" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28205 TBCD "Tubulin-specific chaperone D" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BTW9 TBCD "Tubulin-specific chaperone D" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0027509 CG7261 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00008887 F16D3.4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BYA0	TBCD_MOUSE	No assigned EC number	0.3658	0.8806	0.8018	yes	no
Q5ZI87	TBCD_CHICK	No assigned EC number	0.3804	0.8347	0.8920	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1089
pfam12612		194	pfam12612, TFCD_C, Tubulin folding cofactor D C te	6e-44
COG5234		993	COG5234, CIN1, Beta-tubulin folding cofactor D [Po	2e-23

>gnl\|CDD\|221663 pfam12612, TFCD_C, Tubulin folding cofactor D C terminal	Back alignment and domain information

 Score =  157 bits (399), Expect = 6e-44
 Identities = 73/163 (44%), Positives = 103/163 (63%), Gaps = 9/163 (5%)

Query: 929  DANLATNLVAGIVKQAVEKMDKLREAAAKVLRRIL-YNKTIFVP-IPHREKLEEIVPN-- 984
               L  +++ G++KQAVEK+D++R  A K L+R+L ++    +P IPHRE L++I P   
Sbjct: 1    SPELVQSIIGGLLKQAVEKIDRVRAEAGKALQRLLKHSGDPRIPHIPHREPLQDIFPLES 60

Query: 985  EADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGE 1044
            E  LNW  PA  +PR + LL+   Y   LLSGLV+S GGL ESL K+S SALLEYL+   
Sbjct: 61   ETALNWVSPAEYFPRLIQLLQLPWYRESLLSGLVVSAGGLTESLVKSSRSALLEYLR--- 117

Query: 1045 TEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLL 1087
              +L+  +S    L +D+L +L+   + DRV+VPTLK    LL
Sbjct: 118  --ELEESTSALRQLLDDLLSILKENLKNDRVVVPTLKTLDFLL 158

This domain family is found in eukaryotes, and is typically between 182 and 199 amino acids in length. The family is found in association with pfam02985. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules. Length = 194

>gnl\|CDD\|227559 COG5234, CIN1, Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1089
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	100.0
COG5234		993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	100.0
PF12612		193	TFCD_C: Tubulin folding cofactor D C terminal; Int	99.96
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.44
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.08
PRK09687		280	putative lyase; Provisional	99.02
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.94
KOG1242		569	consensus Protein containing adaptin N-terminal re	98.61
PRK09687		280	putative lyase; Provisional	98.58
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.56
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	98.55
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.52
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.51
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.49
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.49
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.44
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.42
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.39
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.3
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.27
PTZ00429		746	beta-adaptin; Provisional	98.23
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.18
KOG1242		569	consensus Protein containing adaptin N-terminal re	98.16
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.11
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	98.09
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.89
PTZ00429		746	beta-adaptin; Provisional	97.67
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	97.59
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.56
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.53
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.39
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.32
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.23
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.17
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.98
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	96.93
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	96.87
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.8
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	96.76
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	96.58
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.57
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.37
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.26
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.7
KOG2062		929	consensus 26S proteasome regulatory complex, subun	95.54
KOG2259		823	consensus Uncharacterized conserved protein [Funct	95.4
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.38
TIGR02270		410	conserved hypothetical protein. Members are found	95.32
COG1413		335	FOG: HEAT repeat [Energy production and conversion	95.28
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.26
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	95.22
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	95.18
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.95
KOG2062		929	consensus 26S proteasome regulatory complex, subun	94.84
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.77
KOG2259		823	consensus Uncharacterized conserved protein [Funct	94.69
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.67
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	94.06
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.01
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	93.87
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	93.82
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	93.75
KOG2025		892	consensus Chromosome condensation complex Condensi	93.68
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	93.66
COG1413		335	FOG: HEAT repeat [Energy production and conversion	93.54
COG5116		926	RPN2 26S proteasome regulatory complex component [	93.5
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	93.36
TIGR02270		410	conserved hypothetical protein. Members are found	93.23
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	93.22
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	92.71
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	92.63
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.11
KOG0414		1251	consensus Chromosome condensation complex Condensi	92.04
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	92.04
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	91.35
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	91.17
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	90.95
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	90.94
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	90.81
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	90.72
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.55
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	89.56
COG5116		926	RPN2 26S proteasome regulatory complex component [	89.2
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	88.78
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	88.65
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	88.35
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.29
KOG2025		892	consensus Chromosome condensation complex Condensi	87.89
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	87.54
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.79
PF05004		309	IFRD: Interferon-related developmental regulator (	86.72
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	86.24
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.36
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	85.04
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	83.57
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	83.54
KOG4653		982	consensus Uncharacterized conserved protein [Funct	83.34
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	82.93
KOG2137		700	consensus Protein kinase [Signal transduction mech	82.12
COG5096		757	Vesicle coat complex, various subunits [Intracellu	81.49
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	81.21
PF05004		309	IFRD: Interferon-related developmental regulator (	80.41
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	80.15

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.4e-180  Score=1599.14  Aligned_cols=976  Identities=44%  Similarity=0.694  Sum_probs=870.4

Q ss_pred             hHHhHHhhHHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhhhhcCCCchHhHHhhHHHHHHHHHhhcccCCCChhHHhh
Q 001381           20 LQKYFLQEWKIVKSLLDEIV-SYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILK   98 (1089)
Q Consensus        20 ~~~~F~~e~~ev~~ll~~l~-~~~~~~~~~~~~~~~~il~~yqeqP~LLD~~L~~~i~~L~~~~~~~~~~~~~~~~~~~~   98 (1089)
                      ..+.|-.|..++.+++++|+ ++.....+...+++..++++|||||+||||||+.+++.|++.++....+..        
T Consensus        18 ~~ea~~~~l~~ir~lld~i~~~~~~~~~e~~~~~~~~vl~kyQeqP~LLDp~L~~~v~~L~~~v~~~~~d~~--------   89 (1133)
T KOG1943|consen   18 SLEAFPCELYQIRSLLDSIRVSGGRTSREVPLEQYSRVLDKYQEQPHLLDPHLESIVPNLLDIVRKFTIDLG--------   89 (1133)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCcCCcchhHHHHHHHHHHhhchhhccchHHHHHHHHHHHHHhccccch--------
Confidence            55566269999999999997 666667777899999999999999999999999999999999986544333        


Q ss_pred             hhHHHHHhheeeeeeecccceeccCCCCccCHHHHHHHHHhccccccccccccCCcchhHHHHHHHHHHHHHhhcCCCCC
Q 001381           99 IIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDIS  178 (1089)
Q Consensus        99 ~~~~i~~~lY~l~KVRG~K~i~~~fP~ev~~Le~vl~~l~~~~~~~~~~~~~~~~~~~We~~YvlLlWLS~Lvl~PFdL~  178 (1089)
                      ..+.+++++|.+|||||||+|+++|||+|.||+|++++|+.+++         ++..+|++||++|+|||++|++||||+
T Consensus        90 ~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~np---------ss~~~~~~ryilLlWLsvlllnPF~l~  160 (1133)
T KOG1943|consen   90 ELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNP---------SSFSDWETRYILLLWLSVLLLNPFDLS  160 (1133)
T ss_pred             hhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCc---------chHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            23778899999999999999999999999999999999996655         456899999999999999999999999


Q ss_pred             CCCCcccccccCCCCCChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccccccchh
Q 001381          179 SVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNH  258 (1089)
Q Consensus       179 ~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~~k~r~~Aa~LLsrl~tR~D~~~~l~~f~~w~~~~l~~~~~~~~~~  258 (1089)
                      ++|.+...       +..+++.||+..++.|+...|+.|.+||.|++|+++|+|+.+.+.+|++|.++..+.   ..++.
T Consensus       161 rlD~s~~~-------~kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~s~---~~~n~  230 (1133)
T KOG1943|consen  161 RLDESLTF-------DKTNVILRILSFFENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCPST---ETPNI  230 (1133)
T ss_pred             ccCccccc-------CCchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHHhhcccch---hhhhh
Confidence            99985432       234789999999999999999999999999999999999999999999995544332   22335


Q ss_pred             HHHHHHHHHHHHHHHhcChhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 001381          259 FRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSL  338 (1089)
Q Consensus       259 ~~~~G~L~~l~~ilk~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL  338 (1089)
                      |+..|.|..+++|||+++|+++.||.+..++.......++.  ...+.||+++|++||||+++||||+++|||+||+|||
T Consensus       231 ~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d--~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl  308 (1133)
T KOG1943|consen  231 FYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESND--GQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSL  308 (1133)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccc--cHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchh
Confidence            88889999999999999999999999999883322222220  0379999999999999999999999999999999999


Q ss_pred             ccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc
Q 001381          339 GENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS  418 (1089)
Q Consensus       339 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~  418 (1089)
                      .+||+..+.++            +++.-. .++++|+.|||++||.+|++|+++|+|.||.||||||||+|||+.|||++
T Consensus       309 ~~nl~~~s~~~------------~~~~~~-~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~  375 (1133)
T KOG1943|consen  309 ASNLDPDSFAP------------SEPVIL-QQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE  375 (1133)
T ss_pred             hhccCcccccc------------Cccccc-ccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH
Confidence            99998654422            111111 12345555699999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHh
Q 001381          419 LSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAF  498 (1089)
Q Consensus       419 ~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~Wsl  498 (1089)
                      +++|||+++++.|++.+++.+|||+|||||||++||+++|+++++|+|+|++||+||+++|.+|+|+||||||||+||||
T Consensus       376 Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf  455 (1133)
T KOG1943|consen  376 LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAF  455 (1133)
T ss_pred             HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHH
Q 001381          499 GRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA  578 (1089)
Q Consensus       499 aR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va  578 (1089)
                      +|+|+|++++|++++|+..||++++||||+||||||+|||||+|||||++||||+|++++|||+|++|++||.+++..+|
T Consensus       456 ~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia  535 (1133)
T KOG1943|consen  456 ARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIA  535 (1133)
T ss_pred             HhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhc
Q 001381          579 QYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCK  658 (1089)
Q Consensus       579 ~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~  658 (1089)
                      +|+.|++++++||+..|+.|||..+|++||.||.+|....|+++++.++|.+++.+.+.|...|||+.++.+|++.++++
T Consensus       536 ~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~  615 (1133)
T KOG1943|consen  536 EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK  615 (1133)
T ss_pred             hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cc--cc-CChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchh-hHHHHHHHHHHhcCCCcHHHH
Q 001381          659 YD--YA-LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK-TKRSLLDTLNENLRHPNSQIQ  734 (1089)
Q Consensus       659 ~~--~~-~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~-~~~~~~~~L~~~L~~~~~~V~  734 (1089)
                      ..  .. .++..+..+..+++.++++.+|||+| ++||.++|.+|+.++.++.++..+ ..+.|..++..++++++ .||
T Consensus       616 l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~  693 (1133)
T KOG1943|consen  616 LEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG-TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIR  693 (1133)
T ss_pred             hhhhhhhhHHHHhhhhhhhccHHHHHHhccchH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHH
Confidence            76  22 35566667777899999999999988 999999999999999888776655 55789999999998888 999


Q ss_pred             HHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCC
Q 001381          735 NAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPE  813 (1089)
Q Consensus       735 ~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~  813 (1089)
                      ++|.+|++.++..|+..++++. ..++.+++..+. .+++..|+|+++|+|.+|+++.+.++++++   +.+.....+ .
T Consensus       694 ~~av~av~~l~s~y~~~d~~~~-~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l---c~~~l~~~p-~  768 (1133)
T KOG1943|consen  694 DAAVSAVSDLVSTYVKADEGEE-APLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL---CKLVLELLP-S  768 (1133)
T ss_pred             HHHHHHHHHHHHHHHhcCchhh-hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH---HHHHhccCc-c
Confidence            9999999999999998765443 368899999996 558999999999999999999887766555   333222222 3


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHH
Q 001381          814 DRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEI  893 (1089)
Q Consensus       814 ~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~  893 (1089)
                      +.|+++|++.+.++.++|.+++.              ..+.....++.++|++||+|||||+|||||||||++||+++..
T Consensus       769 d~~a~aR~~~V~al~~v~~~~~~--------------~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~  834 (1133)
T KOG1943|consen  769 DAWAEARQQNVKALAHVCKTVTS--------------LLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS  834 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHH--------------hhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence            44999999999999999998873              2344678999999999999999999999999999999999998


Q ss_pred             HHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-c
Q 001381          894 CTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-I  972 (1089)
Q Consensus       894 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~  972 (1089)
                      +...+.                        .|++++++.+++++++++||++|||||+|+.|+.++.++.++ .|++| +
T Consensus       835 ~~~~l~------------------------~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~-~~~i~~~  889 (1133)
T KOG1943|consen  835 LLDTLS------------------------SPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH-SPSIPHF  889 (1133)
T ss_pred             hhhhhc------------------------CcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec-CCCCCcc
Confidence            864443                        268899999999999999999999999999999999999999 68999 9


Q ss_pred             cchHHHhhhcCCCc-ccCcCCCCChhhHHhhhcChhhhHHHHHhhhhcccccCchhhHHHHHHHHHHHHHcccCccchhc
Q 001381          973 PHREKLEEIVPNEA-DLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDAR 1051 (1089)
Q Consensus       973 ~~~~~L~~~f~~~~-~~~w~~~~~~f~~~~~lL~~~~y~~~~l~Glv~SaG~~teslv~~S~~aL~~y~~~~~~~~~~~~ 1051 (1089)
                      ||.+.|.++|+.+. ..+|..+...||+++.++.+|.|+++++.|+++|+||++|++++.|..++++|++  +..+   +
T Consensus       890 ~~~~~L~ei~~~~~a~~~~~~~~~~f~L~~~Ll~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~---d  964 (1133)
T KOG1943|consen  890 RHIEKLEEIFPRDYANVPWALPPTLFPLNSSLLELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENS---D  964 (1133)
T ss_pred             hHHHHHHhhcCcccccCCCcccchhhhHHHHHHhhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--Hhhc---C
Confidence            99999999999643 7899999999999999999999999999999999999999999999999999999  4444   5


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCCeeeccHHHHHHHhhc
Q 001381         1052 SSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLK 1088 (1089)
Q Consensus      1052 ~~~l~~~~~~ll~il~~~~~~~Rv~vP~l~~l~~Ll~ 1088 (1089)
                      +......+.++.+++..+..++|+..|.++++..+|+
T Consensus       965 p~t~~~~~stl~~~~~~~l~~eri~~~~l~~l~~~f~ 1001 (1133)
T KOG1943|consen  965 PKTIGSRDSTLLQLIEEALLNERIMERFLRPLMIVFN 1001 (1133)
T ss_pred             cccccchHHHHHHHHHHHHHHHHhcCccceeHHHHhc
Confidence            6677788999999999999999999999999988875

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]	Back alignment and domain information

>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1089
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-13
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-11
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-10
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-07
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-06
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-05
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-08
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	3e-06
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	2e-07
1qgr_A		876	Protein (importin beta subunit); transport recepto	2e-07
1qgr_A		876	Protein (importin beta subunit); transport recepto	3e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	3e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	4e-04
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	5e-06
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	1e-04
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 83.0 bits (204), Expect = 4e-16
 Identities = 105/747 (14%), Positives = 220/747 (29%), Gaps = 253/747 (33%)

Query: 2   EEVIFSQEED---ELDCKEIVLQKYFLQEWKIV--KSLLDEIVSYGRVPDTSSVHKIRSI 56
           ++++   E+      DCK++          K +  K  +D I+      D   V     +
Sbjct: 19  KDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHII---MSKDA--VSGTLRL 67

Query: 57  MDKYQEQG-QLVEPYLENIVSP----LMSIIRSKTIELGADSDEILKIIKPICIIIYTLV 111
                 +  ++V+ ++E ++      LMS I+++  +    +   ++    +        
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-------- 119

Query: 112 TVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILL------ 165
               Y     F  + VS L+  + L +       +  LR         K V++       
Sbjct: 120 ----YNDNQVFAKYNVSRLQPYLKLRQA------LLELRPA-------KNVLIDGVLGSG 162

Query: 166 --WLSILVLVPFDISSVDTSIANNE----NLGQ-NEPAPLVMRILGFC----KDYLSNAG 214
             W+++ V + + +        + +    NL   N P  ++  +         ++ S + 
Sbjct: 163 KTWVALDVCLSYKV----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 215 PMRTI------AGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTD-DVMNHF----RLL- 262
               I          L +LL                  VL +V +    N F    ++L 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VLLNVQNAKAWNAFNLSCKILL 270

Query: 263 -----GVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRL 317
                 V + L+A   A    + LD   +                  LL KYL       
Sbjct: 271 TTRFKQVTDFLSA---ATTTHISLDHHSMTLTPDEVK---------SLLLKYL-----DC 313

Query: 318 GLTCLPR--CTSAWRYVIRTSSLGENMSSRAA----FREI--DQCDHSV---VDSLKSEQ 366
               LPR   T+  R +   S + E++    A    ++ +  D+    +   ++ L+  +
Sbjct: 314 RPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 367 NRNC-------PEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL 419
            R         P      +P     ++ ++            W                 
Sbjct: 371 YRKMFDRLSVFPPS--AHIP---TILLSLI------------WFDVI------------- 400

Query: 420 SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRG 479
             +V   V +L          H   L    + ++      S+P        +++ +++  
Sbjct: 401 KSDVMVVVNKL----------HKYSL----VEKQPKESTISIP--------SIYLELKV- 437

Query: 480 SHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQ 539
                  + +              H   R+I++           +D              
Sbjct: 438 ------KLEN----------EYALH---RSIVDHYNIP----KTFD-------------- 460

Query: 540 ENVGRQGNYPHGIDIVNTADYFSLSSRVYSYL--HVAVFIAQYEGY-LYP--FVD-ELLY 593
                       +       YF      YS++  H+   I   E   L+   F+D   L 
Sbjct: 461 ---------SDDLIPPYLDQYF------YSHIGHHLKN-IEHPERMTLFRMVFLDFRFLE 504

Query: 594 NKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFT-LSTDLCT---RHGATLAA 649
            KI H D      +   L+ L     +++  +I +    +  L   +     +    L  
Sbjct: 505 QKIRH-DSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 650 GE----VVLALCKYDYALPADKQKIVA 672
            +    + +AL   D A+  +  K V 
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1089
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.77
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.76
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.73
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.7
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.67
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.67
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.66
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.66
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.57
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.26
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.19
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.12
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.97
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.89
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.89
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.84
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.74
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.73
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.7
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.64
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.64
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.6
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.52
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	98.49
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	98.46
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	98.4
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.37
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	98.36
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.35
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	98.35
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.33
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.31
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.28
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.27
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	98.26
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.19
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	98.19
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.17
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.17
2x19_B		963	Importin-13; nuclear transport, protein transport;	98.16
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	98.16
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.14
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	98.11
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.06
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.03
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.02
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.98
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	97.98
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.96
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	97.89
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.88
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.83
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.8
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.79
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.74
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.67
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.6
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	97.49
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.45
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.42
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.33
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	97.27
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	97.24
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	97.06
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	96.98
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	96.98
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	96.97
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.59
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.43
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.38
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	96.03
1vsy_5		997	Proteasome activator BLM10; 20S proteasome BLM10,	95.84
3nmz_A		458	APC variant protein; protein-protein complex, arma	95.78
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.64
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	95.52
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	95.4
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.16
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	95.01
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	94.54
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	94.52
3nmz_A		458	APC variant protein; protein-protein complex, arma	94.26
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	94.08
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	93.75
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	93.55
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	93.31
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	93.19
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.17
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	92.77
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	92.7
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	91.49
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	91.34
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	91.06
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	90.96
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	89.76
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	88.3
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	87.2
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	86.51
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	85.49
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	82.77

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

Probab=99.77  E-value=1e-14  Score=191.58  Aligned_cols=651  Identities=12%  Similarity=0.100  Sum_probs=385.8

Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcC-CchhhHHHHHHHHHhcCCChH
Q 001381          156 EMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPDMP  234 (1089)
Q Consensus       156 ~We~~YvlLlWLS~Lvl~PFdL~~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~-~k~r~~Aa~LLsrl~tR~D~~  234 (1089)
                      +...|+.-+--|...+..|+.  ..|.              .....++.....+|.++ ...|.+|+..|+.+..+-.- 
T Consensus        19 d~~~R~~A~~~L~~~l~~~~~--~~~~--------------~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-   81 (1230)
T 1u6g_C           19 DKDFRFMATNDLMTELQKDSI--KLDD--------------DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-   81 (1230)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCC--SCCT--------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred             CHhHHHHHHHHHHHHHccccc--CCCh--------------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-
Confidence            346888887777776665533  2232              13346666666677544 67899999999998865322 


Q ss_pred             HHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcChhh-----hhhhhHHHHHhhhh-hhccCcCCCchhHHH
Q 001381          235 TAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKV-----LLDVIPVVWNDAST-MLKSGSAARSPLLRK  308 (1089)
Q Consensus       235 ~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~~~~-----l~~~~~~i~~~~~~-l~~~~~~~~~~l~rK  308 (1089)
                      ..++.++....+.+...+..    .+. +....++.+........     ..++.+.++..... +.+++    +.-.|.
T Consensus        82 ~~~~~i~~~Ll~~l~d~~~~----vR~-~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~----~~~~~~  152 (1230)
T 1u6g_C           82 YQVETIVDTLCTNMLSDKEQ----LRD-ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE----DVSVQL  152 (1230)
T ss_dssp             HHHHHHHHHHHHHTTCSSSH----HHH-HHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS----CHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHH----HHH-HHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC----chHHHH
Confidence            23566666666666433221    233 55566777766544331     22334444432221 22222    445666


Q ss_pred             HHHHHHHHhhhcccCCCCccccccccccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHH
Q 001381          309 YLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEI  388 (1089)
Q Consensus       309 l~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~  388 (1089)
                      ..+.++..+.-.+                                                   .+  .+...++.+++.
T Consensus       153 ~al~~l~~~~~~~---------------------------------------------------~~--~l~~~~~~ll~~  179 (1230)
T 1u6g_C          153 EALDIMADMLSRQ---------------------------------------------------GG--LLVNFHPSILTC  179 (1230)
T ss_dssp             HHHHHHHHHHHHT---------------------------------------------------CS--SCTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHh---------------------------------------------------Hh--HHHHHHHHHHHH
Confidence            6666655543110                                                   00  112357899999


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc-CCCCCCcccchHHH
Q 001381          389 LLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR-GLLLPSSLPKVVPV  467 (1089)
Q Consensus       389 ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~-~ll~p~~l~~il~~  467 (1089)
                      |+..|.|.++.||-.|+++++.++...+.++.+.+++.+++.+....+.....++|-+++++++. |-.+.+++++++|.
T Consensus       180 l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~  259 (1230)
T 1u6g_C          180 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL  259 (1230)
T ss_dssp             HGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888888999998775443334556789999998875 22234578999999


Q ss_pred             HHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCC
Q 001381          468 IVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGN  547 (1089)
Q Consensus       468 i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~  547 (1089)
                      +.+++..+        -..||+++.-.+-.+++.+. +.+.||+..+...++....+|++.  +..  .. .+..++.+.
T Consensus       260 ll~~l~d~--------~~~vR~~a~~~l~~l~~~~~-~~~~~~l~~li~~ll~~l~~d~~~--~~~--~d-~~~~~~~~~  325 (1230)
T 1u6g_C          260 VVKFCNVD--------DDELREYCIQAFESFVRRCP-KEVYPHVSTIINICLKYLTYDPNY--NYD--DE-DEDENAMDA  325 (1230)
T ss_dssp             HHHHHSSC--------CTTTHHHHHHHHHHHHHCTT-CCCHHHHHHHHHHHTTCCCCC----------------------
T ss_pred             HHHHhcCC--------CHHHHHHHHHHHHHHHHHCh-HHHHHhHHHHHHHHHHHhCCCCCC--CCc--cc-ccccccccc
Confidence            99888632        25699999998888888765 567899999988887665566654  100  00 000111100


Q ss_pred             CCCCc-cceeccccc------chhhhHHHHHHHHHHHHh----hhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHc
Q 001381          548 YPHGI-DIVNTADYF------SLSSRVYSYLHVAVFIAQ----YEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVK  616 (1089)
Q Consensus       548 ~p~GI-~il~~~d~~------~v~~r~~a~~~va~~va~----~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~  616 (1089)
                      . .|- +--...|.|      ....|..|...+...+..    +..|.+.+++.|+. .+.+.+..+|..++++++.++.
T Consensus       326 ~-~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          326 D-GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALIS-RFKEREENVKADVFHAYLSLLK  403 (1230)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHS-TTSCSSSHHHHHHHHHHHHHHH
T ss_pred             c-ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHH
Confidence            0 000 000000111      122344443333333332    23566667777765 5677789999999999999886


Q ss_pred             cCc------------------h----hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhh
Q 001381          617 YDP------------------E----YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGI  674 (1089)
Q Consensus       617 ~~~------------------~----~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i  674 (1089)
                      ..+                  .    ...+.++|.+.+.+.+.++.+|++++.++++++..+...   . ......+...
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~---l-~~~l~~ll~~  479 (1230)
T 1u6g_C          404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA---L-TQHIPVLVPG  479 (1230)
T ss_dssp             HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT---T-GGGHHHHHHH
T ss_pred             HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh---h-HHHHHHHHHH
Confidence            321                  1    122345555556688899999999999999999875321   1 1122333222


Q ss_pred             hHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc--
Q 001381          675 VPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA--  751 (1089)
Q Consensus       675 ~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~--  751 (1089)
                      +....+..    ....-++.+++..+..+....-|-. ...+..+...+..++.+++..|+..|..++..+...+-..  
T Consensus       480 l~~~L~d~----~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~  555 (1230)
T 1u6g_C          480 IIFSLNDK----SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ  555 (1230)
T ss_dssp             HHHHTTCS----SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHHHcCC----CCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence            22222111    1123566777777766543221110 1133445555666778888889888888888887654210  


Q ss_pred             cCc----chhhhhHHHHHHHh--CCCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCCHHHHHH
Q 001381          752 ADS----GVVGGISLKYMEQL--TDPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDTEARVN  822 (1089)
Q Consensus       752 ~~~----~~~~~~v~~~~~~L--~s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~  822 (1089)
                      ...    ...+.+++.+++.+  .+.++..|.+++.++|.+-...   +.+.+..++..|...+.        ...+|.+
T Consensus       556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~--------~e~~r~~  627 (1230)
T 1u6g_C          556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK--------NEITRLT  627 (1230)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT--------SSSHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc--------cchhHHH
Confidence            000    11267777888888  5677889999999999885442   33556777777766642        1248999


Q ss_pred             HHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccC
Q 001381          823 AVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRD  902 (1089)
Q Consensus       823 al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~  902 (1089)
                      ++++++.+....+..             . .......++..|...+.|-        -.-+|..+++++..++...    
T Consensus       628 ~~~al~~i~~~~~~~-------------~-~~~~~~~i~~~L~~~l~~~--------~~~~r~~a~~al~~l~~~~----  681 (1230)
T 1u6g_C          628 TVKALTLIAGSPLKI-------------D-LRPVLGEGVPILASFLRKN--------QRALKLGTLSALDILIKNY----  681 (1230)
T ss_dssp             HHHHHHHHTTCSSCC-------------C-CHHHHHHHHHHHHHHTTSC--------CHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCcccc-------------c-hHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHhcc----
Confidence            999999887533210             0 1356778888888888652        1349999999998875221    


Q ss_pred             CCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381          903 FVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYN  965 (1089)
Q Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~  965 (1089)
                                            +..++.+.+..++..++....+.=..++..++.+|..++..
T Consensus       682 ----------------------~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~  722 (1230)
T 1u6g_C          682 ----------------------SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV  722 (1230)
T ss_dssp             ----------------------CTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS
T ss_pred             ----------------------cccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Confidence                                  11223344444444443332233345677777777777643

PyMOL of 1u6g

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1089
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-12
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-10
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-05
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-08
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-07
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-05
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-05
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-04
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 98/770 (12%), Positives = 220/770 (28%), Gaps = 70/770 (9%)

Query: 64   GQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKII--------KPICIIIYTLVTVCG 115
             + V P++  I++  +  +         D DE    +               Y+      
Sbjct: 284  PKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMS 343

Query: 116  YKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPF 175
            +K          + +     +L + + T S   + +    E   K  +      L+    
Sbjct: 344  WKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403

Query: 176  DISS--VDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDM 233
             + S   D                 V  I+      +             +   L     
Sbjct: 404  PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463

Query: 234  PTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPV------- 286
                         ++ S+ D   +    +  +  L  I      +V    +         
Sbjct: 464  GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523

Query: 287  ---------------VWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRY 331
                           V      +++      S     Y+  L                  
Sbjct: 524  CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVK 583

Query: 332  VIRTSSLGENMSS--RAAFREIDQCDHSVVDSLKSEQNRNC---------PEDEGMDVPD 380
                S +G+ + +       ++       ++ LK+E  R                +D+  
Sbjct: 584  ERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRP 643

Query: 381  ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSW 440
            +L E + IL S LR     ++      +  +    + SL+  +  +VL+   P   +   
Sbjct: 644  VLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDM 703

Query: 441  HGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGR 500
            H   +A++ L     + PSSL K+   I+  L   +R      G  +     +       
Sbjct: 704  HVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSAMLDFFQALVVT 762

Query: 501  AYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGI---DIVNT 557
               +    ++L  +   + + +          + A                +    I + 
Sbjct: 763  GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 822

Query: 558  ADYFSLSSRVYSYLHVAVFIAQYEGYLY-PFVDELLYNKICHWDKVLRELAAEALSALVK 616
             +  S  S     L     +  +        +  ++        + ++  A+ AL ++  
Sbjct: 823  KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV 882

Query: 617  YDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVP 676
             +   +  F+L+++T     +    ++    +  E++        A     +  V  I  
Sbjct: 883  GNLPEYLPFVLQEIT-----SQPKRQYLLLHSLKEII------SSASVVGLKPYVENIWA 931

Query: 677  GIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNA 736
             + K         E  R+ V+   EC+    +  PE     LL  L   L   +S  +++
Sbjct: 932  LLLKHC---ECAEEGTRNVVA---ECLGKLTLIDPET----LLPRLKGYLISGSSYARSS 981

Query: 737  AVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786
             V A+K  +  +    D  +   I   +++ L DP+  +RR + +     
Sbjct: 982  VVTAVKFTISDHPQPIDPLLKNCIG-DFLKTLEDPDLNVRRVALVTFNSA 1030

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1089
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.77
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.66
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.64
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.45
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.39
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.35
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.32
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.25
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.91
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.87
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.8
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.34
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.04
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.96
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.83
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.75
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.6
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.49
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.23
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.2
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.06
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.44
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.1
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.53
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.72
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	81.25

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.1e-17  Score=191.03  Aligned_cols=492  Identities=15%  Similarity=0.123  Sum_probs=318.8

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC---CCCCcc
Q 001381          386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL---LLPSSL  461 (1089)
Q Consensus       386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l---l~p~~l  461 (1089)
                      |..|++.|++.|..+|+.++|.++.|+..|+++- .+++++.+.+.++..  +.    .+.+++|-...-.   --|++.
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~--~e----v~~~~~~~l~~~~~~~~~~~~~   85 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE--DE----VLLALAEQLGTFTTLVGGPEYV   85 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCC--HH----HHHHHHHHHTTCSGGGTSGGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCc--HH----HHHHHHHHHHHHHHHcCChhHH
Confidence            7788999999999999999999999999998764 578999999988543  22    3444444322110   125567


Q ss_pred             cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhH----HHHH------------------------
Q 001381          462 PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN----ILEQ------------------------  513 (1089)
Q Consensus       462 ~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~----~~~~------------------------  513 (1089)
                      ..++|.+...+..+.        ..||++|+-....++...+++.+..    ++..                        
T Consensus        86 ~~ll~~l~~l~~~~~--------~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~  157 (588)
T d1b3ua_          86 HCLLPPLESLATVEE--------TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV  157 (588)
T ss_dssp             GGGHHHHHHHTTSSC--------HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred             HHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Confidence            778888766654443        5699999999999888877654432    1111                        


Q ss_pred             ------HHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccc-c---chhhhHHHHHHHHHHHHhhh--
Q 001381          514 ------IAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADY-F---SLSSRVYSYLHVAVFIAQYE--  581 (1089)
Q Consensus       514 ------l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~-~---~v~~r~~a~~~va~~va~~~--  581 (1089)
                            -+..++...+-|++..+|++|+.++.+++...+.-.---.++..... .   .-..|..+...++.....++  
T Consensus       158 ~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~  237 (588)
T d1b3ua_         158 SSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred             hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence                  12334556678999999999999999987765521000011111100 0   12334444444433333222  


Q ss_pred             cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc-hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhccc
Q 001381          582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDP-EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYD  660 (1089)
Q Consensus       582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~-~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~  660 (1089)
                      .+...+++.+.. .+.+.+..+|..++++|++++...+ +.....++|.+...+.+.+..+|-.++.+++.+...+... 
T Consensus       238 ~~~~~i~~~l~~-~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~-  315 (588)
T d1b3ua_         238 DLEALVMPTLRQ-AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-  315 (588)
T ss_dssp             HHHHHTHHHHHH-HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT-
T ss_pred             HHHHHHHHHHHH-hcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh-
Confidence            222333443333 4568888999999999999886543 3344567888888888889999999998888887765321 


Q ss_pred             ccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001381          661 YALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKA  740 (1089)
Q Consensus       661 ~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~A  740 (1089)
                          ......+..+++.+.+.  .. ....-+|.+++..+..++.. +. .......++..+...+.+++++|+..+..+
T Consensus       316 ----~~~~~~~~~i~~~l~~~--~~-d~~~~vr~~~~~~l~~~~~~-~~-~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~  386 (588)
T d1b3ua_         316 ----CRENVIMSQILPCIKEL--VS-DANQHVKSALASVIMGLSPI-LG-KDNTIEHLLPLFLAQLKDECPEVRLNIISN  386 (588)
T ss_dssp             ----THHHHHHHTHHHHHHHH--HT-CSCHHHHHHHHTTGGGGHHH-HC-HHHHHHHTHHHHHHHHTCSCHHHHHHHHTT
T ss_pred             ----hhhhhhHHHHHHHHHHh--hc-CCChHHHHHHHHHHhhhhhc-cc-hhHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence                11111122333333211  11 12345777777766655421 11 123445667777778899999999999999


Q ss_pred             HHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhH-HHHHHHHhhhccccCCCCCCCHHH
Q 001381          741 LKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSW-RDVLLKLCSCCLIEENPEDRDTEA  819 (1089)
Q Consensus       741 l~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~-~~i~~~L~~~~~~~~~~~~~d~e~  819 (1089)
                      +..+...+..   ....+.+++.+.+.+++.+...|.+.+.+++.+....-...+ ..+...+...+      .+...+.
T Consensus       387 l~~~~~~~~~---~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~D~~~~V  457 (588)
T d1b3ua_         387 LDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL------VDHVYAI  457 (588)
T ss_dssp             CHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG------GCSSHHH
T ss_pred             HHHHHhhcch---hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhc------cCCchhH
Confidence            9888765421   112366777788888899999999999999887654422221 22333343433      2446799


Q ss_pred             HHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhh
Q 001381          820 RVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILC  899 (1089)
Q Consensus       820 R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~  899 (1089)
                      |..|+++|+.++...|..                 .....+++.+...+.|        --.++|.+++.++..+...+.
T Consensus       458 R~~A~~~L~~l~~~~~~~-----------------~~~~~i~~~l~~~~~~--------~~~~~R~~~~~~l~~l~~~~~  512 (588)
T d1b3ua_         458 REAATSNLKKLVEKFGKE-----------------WAHATIIPKVLAMSGD--------PNYLHRMTTLFCINVLSEVCG  512 (588)
T ss_dssp             HHHHHHHHHHHHHHHCHH-----------------HHHHHTHHHHHHTTTC--------SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcH-----------------HHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHHcC
Confidence            999999999998877641                 2234566666666543        347899999999987752221


Q ss_pred             ccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381          900 KRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYN  965 (1089)
Q Consensus       900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~  965 (1089)
                                                   .......++..+++.+..+..+||..|.++|..+.+.
T Consensus       513 -----------------------------~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         513 -----------------------------QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             -----------------------------HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             -----------------------------hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence                                         1223467788999999999999999999999988543

PyMOL of d1b3ua_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure