Citrus Sinensis ID: 001468
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1073 | 2.2.26 [Sep-21-2011] | |||||||
| Q7X923 | 1056 | FACT complex subunit SPT1 | yes | no | 0.980 | 0.996 | 0.732 | 0.0 | |
| Q8H6B1 | 1055 | FACT complex subunit SPT1 | N/A | no | 0.972 | 0.989 | 0.724 | 0.0 | |
| O82491 | 1074 | FACT complex subunit SPT1 | yes | no | 0.977 | 0.976 | 0.719 | 0.0 | |
| Q9Y5B9 | 1047 | FACT complex subunit SPT1 | yes | no | 0.905 | 0.928 | 0.379 | 1e-180 | |
| Q920B9 | 1047 | FACT complex subunit SPT1 | yes | no | 0.905 | 0.928 | 0.376 | 1e-179 | |
| Q54S43 | 1072 | FACT complex subunit SPT1 | yes | no | 0.858 | 0.859 | 0.370 | 1e-173 | |
| O94267 | 1019 | FACT complex subunit spt1 | yes | no | 0.924 | 0.973 | 0.369 | 1e-173 | |
| Q8IRG6 | 1083 | FACT complex subunit spt1 | yes | no | 0.917 | 0.908 | 0.367 | 1e-171 | |
| Q9W603 | 1035 | FACT complex subunit SPT1 | N/A | no | 0.932 | 0.967 | 0.361 | 1e-170 | |
| Q9N5R9 | 1030 | FACT complex subunit spt- | yes | no | 0.923 | 0.962 | 0.363 | 1e-165 |
| >sp|Q7X923|SPT16_ORYSJ FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1560 bits (4038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1069 (73%), Positives = 915/1069 (85%), Gaps = 17/1069 (1%)
Query: 6 NSTVKPAAGKPSGNAAANTYAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVS 65
N KP G + Y INLDNFSKRLK+ Y HW EHNSDLWG SNA+A+ATPP S
Sbjct: 4 NGNAKPGGG------GSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAIATPPPS 57
Query: 66 EDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEAVGIEVV 125
EDLRYLKSSAL+VWL+GYEFPETI+VF+ KQIHFLCSQKKA+L+ +KK+A +AVG ++V
Sbjct: 58 EDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQKKANLIGTLKKAANDAVGADIV 117
Query: 126 IHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANF 185
+HVK K D G GLM+ I AV QSKS + P+VGHI++EAPEGKLLE W +KL ++
Sbjct: 118 LHVKAKNDSGVGLMEDIVRAVCAQSKS---DDPIVGHIAKEAPEGKLLEAWADKLSSSSV 174
Query: 186 ALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMD 245
L+D++NGFS+LFA+KD +E+T +KKA++L+SSVMK FVVPKLEKVIDEE+KV+HSSLMD
Sbjct: 175 QLTDITNGFSELFAMKDTSEITCVKKASYLTSSVMKNFVVPKLEKVIDEERKVTHSSLMD 234
Query: 246 ETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAV 305
ETEKAIL+P ++KVKLKAENVDICYPP+FQSGG+FDLKP ASSND+YLYYDS SVIICA+
Sbjct: 235 ETEKAILDPLKVKVKLKAENVDICYPPVFQSGGKFDLKPGASSNDDYLYYDSASVIICAI 294
Query: 306 GSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEK 365
G+RY +YCSN+ARTFLIDA Q KAYE L+KAHEAA+ ALK GN++SA Y+AA V+EK
Sbjct: 295 GARYGNYCSNMARTFLIDATPTQIKAYETLMKAHEAALEALKPGNRMSAVYQAAVDVIEK 354
Query: 366 DAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKT 425
+APEL NLT++AGTGIGLEFRESGL+LN KNDRI+KAGMVFNVSLG NLQ E K+ KT
Sbjct: 355 NAPELLRNLTKSAGTGIGLEFRESGLNLNPKNDRIIKAGMVFNVSLGLHNLQAEKKSEKT 414
Query: 426 QKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNEDDEEEEQPKVKAEVKGGEPTLS 485
+++S+LLADT +V + +T+ SK VKDVAYSFN++DE KV+ K P +
Sbjct: 415 KQYSLLLADTCLVPL---ENLTASCSKLVKDVAYSFNDEDEVLPVKKVEVNAKEALPP-T 470
Query: 486 KATLRSDHQEMSKEELRRQHQAELARQKNEETARRLAGGGSSTADNRGSVKTIGDLVAYK 545
KATLRSD+QEMSKEELRRQHQAELARQKNEETARRLAG GS + D RG ++ +LVAYK
Sbjct: 471 KATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGSGSGDGRGPSRSSNELVAYK 530
Query: 546 NVNDLPPPRDLMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYIRIIFNVP 605
NVND+P R+L+IQVDQKNEA+LLPIYGSMVPFHV+TVKSV+S QD NR+C IRI FNVP
Sbjct: 531 NVNDVPYARELVIQVDQKNEAVLLPIYGSMVPFHVSTVKSVTSHQD-NRTCTIRIFFNVP 589
Query: 606 GTSFTPHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQIKTLRRQVTSRESERAERATL 665
G F+ +DSN LK QG+IYLKE++ RSKD RH SEVVQQIKTLRRQV SRESERAERATL
Sbjct: 590 GMPFS-NDSN-LKSQGAIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERAERATL 647
Query: 666 VTQEKLQLASAKFKPLKLFDLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPDERVDVMY 725
VTQEKLQL S + KP++L D+WIRP FGGRGRKLTG+LE+H NGFRYSTSR DERVD+MY
Sbjct: 648 VTQEKLQLTSNRNKPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMY 707
Query: 726 GNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEVMDVVQTLGGGKRSAYDP 785
GN+KHAFFQPAE+EMITLLHFHLHNHIMVGNKKTKDVQFY+EVMDVVQTLGG +RSA DP
Sbjct: 708 GNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDP 767
Query: 786 DEVEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKAS 845
DE+EEEQRER RKN+INMDFQNFVN+VND W QPQFK DLEFD PLRELGFHGVP+KAS
Sbjct: 768 DEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKAS 827
Query: 846 AFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSI 905
AFI+PTS+CLVELIETPF+V+TLSEIEIVNLERVG G KNFDM IVFKDFK+DVLRIDSI
Sbjct: 828 AFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSI 887
Query: 906 PSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEASDSES 965
PS+SLD IKEWLDTTDLKYYESRLNLNWRPILKTI DDP+KFI+DGGWEFLNMEASDSE+
Sbjct: 888 PSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSET 947
Query: 966 ENSQDSDQGYEPSDVQSDSVSDDENDDSESLVESEDDEEEDSEEDSEEDKGKTWEELERE 1025
E +++SDQGYEPSD + +S S+DE+ DSESLVES++D+E+DSEEDSEE+KGKTWEELERE
Sbjct: 948 EETEESDQGYEPSDAEPESESEDEDSDSESLVESDEDDEDDSEEDSEEEKGKTWEELERE 1007
Query: 1026 ASYADREKGADSDSEDERKRRKMKAFGKARAPEKRNP-GGSLPKRAKLR 1073
AS ADRE GA+SDSE+ER+RRK+K F K+R P +R+ G K+ K R
Sbjct: 1008 ASNADRENGAESDSEEERRRRKVKTFSKSRPPPERSSFKGGPSKKPKFR 1056
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Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. SSRP1 binds specifically to double-stranded DNA. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H6B1|SPT16_MAIZE FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1 | Back alignment and function description |
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| >sp|O82491|SPT16_ARATH FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 | Back alignment and function description |
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| >sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54S43|SPT16_DICDI FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1 | Back alignment and function description |
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| >sp|O94267|SPT16_SCHPO FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1073 | ||||||
| 359487575 | 1071 | PREDICTED: FACT complex subunit SPT16-li | 0.996 | 0.998 | 0.857 | 0.0 | |
| 255543004 | 1098 | FACT complex subunit SPT16, putative [Ri | 0.991 | 0.969 | 0.827 | 0.0 | |
| 224124958 | 1053 | global transcription factor group [Popul | 0.981 | 1.0 | 0.855 | 0.0 | |
| 147775767 | 1019 | hypothetical protein VITISV_017318 [Viti | 0.947 | 0.998 | 0.815 | 0.0 | |
| 147775766 | 1083 | hypothetical protein VITISV_017317 [Viti | 0.986 | 0.976 | 0.770 | 0.0 | |
| 225450478 | 1083 | PREDICTED: FACT complex subunit SPT16-li | 0.986 | 0.976 | 0.769 | 0.0 | |
| 224122844 | 1082 | global transcription factor group [Popul | 0.994 | 0.986 | 0.761 | 0.0 | |
| 356569402 | 1064 | PREDICTED: FACT complex subunit SPT16-li | 0.991 | 1.0 | 0.742 | 0.0 | |
| 449433555 | 1073 | PREDICTED: FACT complex subunit SPT16-li | 0.994 | 0.994 | 0.757 | 0.0 | |
| 224124374 | 1065 | global transcription factor group [Popul | 0.992 | 1.0 | 0.774 | 0.0 |
| >gi|359487575|ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1912 bits (4953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1075 (85%), Positives = 998/1075 (92%), Gaps = 6/1075 (0%)
Query: 1 MAEHQNSTVKPAAGKPSGNAAANTYAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVA 60
MAEH+N KP+ GK SG AA+ YAINLDNF+KRLK LYSHW EH+SDLWG S+ALA+A
Sbjct: 1 MAEHRNGNAKPSDGKASG--AASPYAINLDNFTKRLKTLYSHWKEHSSDLWGSSDALAIA 58
Query: 61 TPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEAV 120
TPP S+DLRYLKSSALN+WL+GYEFPETIMVF+KKQIHFLCSQKKASLLEV++KSAKEAV
Sbjct: 59 TPPASDDLRYLKSSALNIWLLGYEFPETIMVFMKKQIHFLCSQKKASLLEVVRKSAKEAV 118
Query: 121 GIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKL 180
G+EVV+HVK K+DDG+GLMD IF AV ++ S ++PVVGHI REAPEGKLLE W EKL
Sbjct: 119 GVEVVMHVKAKSDDGTGLMDAIFRAV--RANSSSHDTPVVGHIGREAPEGKLLEMWTEKL 176
Query: 181 KKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSH 240
K A+F LSD++NGFSDLFA+KD TELTN+KKAAFL+SSVMK FVVPKLEKVIDEEKKVSH
Sbjct: 177 KNADFQLSDITNGFSDLFAMKDSTELTNVKKAAFLTSSVMKHFVVPKLEKVIDEEKKVSH 236
Query: 241 SSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSV 300
SSLMD+TEKAILEPAR+KVKLKAENVDICYPPIFQSGGEFDL+PSASSND LYYDSTSV
Sbjct: 237 SSLMDDTEKAILEPARVKVKLKAENVDICYPPIFQSGGEFDLRPSASSNDENLYYDSTSV 296
Query: 301 IICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAAS 360
IICA+GSRYNSYCSNVARTFLIDAN +QSKAYEVLLKAHEAAI ALK GNKVSAAY+AA
Sbjct: 297 IICAIGSRYNSYCSNVARTFLIDANAMQSKAYEVLLKAHEAAIGALKPGNKVSAAYQAAL 356
Query: 361 TVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTEN 420
VVEKDAPEL +NLT++AGTGIGLEFRESGL+LNAKNDR+LK GMVFNVSLGFQNLQT+
Sbjct: 357 AVVEKDAPELVSNLTKSAGTGIGLEFRESGLNLNAKNDRVLKPGMVFNVSLGFQNLQTDT 416
Query: 421 KNPKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNEDDEEEE--QPKVKAEVK 478
NPKTQKFSVLLAD+VIVGEK P++VTS SSKAVKDVAYSFNEDD+EEE +PKVK E
Sbjct: 417 NNPKTQKFSVLLADSVIVGEKGPEVVTSISSKAVKDVAYSFNEDDDEEEEERPKVKPEAN 476
Query: 479 GGEPTLSKATLRSDHQEMSKEELRRQHQAELARQKNEETARRLAGGGSSTADNRGSVKTI 538
GGE SKATLRSD+QEMSKEELRRQHQAELARQKNEETARRLAGGGS DNRG+VK
Sbjct: 477 GGEAVSSKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGGGSGAGDNRGAVKAT 536
Query: 539 GDLVAYKNVNDLPPPRDLMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYI 598
GDL+AYKNVNDLPPP++LMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNR+CYI
Sbjct: 537 GDLIAYKNVNDLPPPKELMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRTCYI 596
Query: 599 RIIFNVPGTSFTPHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQIKTLRRQVTSRESE 658
RIIFNVPGT F+PHDSNS+KFQGSIYLKEVS RSKD RHISEVVQ IKTLRRQV SRESE
Sbjct: 597 RIIFNVPGTPFSPHDSNSMKFQGSIYLKEVSFRSKDPRHISEVVQMIKTLRRQVASRESE 656
Query: 659 RAERATLVTQEKLQLASAKFKPLKLFDLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPD 718
RAERATLVTQEKLQLA +FKP++L DLWIRP FGGRGRKLTGSLE+HTNGFRYSTSRPD
Sbjct: 657 RAERATLVTQEKLQLAGTRFKPIRLSDLWIRPSFGGRGRKLTGSLESHTNGFRYSTSRPD 716
Query: 719 ERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEVMDVVQTLGGG 778
ERVD+MYGNIKHAFFQPAE+EMITLLHFHLHNHIMVGNKKTKDVQF++EVMDVVQTLGGG
Sbjct: 717 ERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFFVEVMDVVQTLGGG 776
Query: 779 KRSAYDPDEVEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFH 838
KRSAYDPDE+EEEQRER RKNKINMDFQNFVNRVNDLWGQPQFK DLEFDQPLRELGFH
Sbjct: 777 KRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFKGLDLEFDQPLRELGFH 836
Query: 839 GVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRD 898
GVPHKASAFIVPTSSCLVELIETPF+VITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRD
Sbjct: 837 GVPHKASAFIVPTSSCLVELIETPFLVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRD 896
Query: 899 VLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNM 958
VLRIDSIPS+SLDGIKEWLDTTDLKYYESRLNLNWRPILKTIT+DPEKFIEDGGWEFLN+
Sbjct: 897 VLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITEDPEKFIEDGGWEFLNL 956
Query: 959 EASDSESENSQDSDQGYEPSDVQSDSVSDDENDDSESLVESEDDEEEDSEEDSEEDKGKT 1018
E SDS+SENSQ+SDQGYEPSDVQSD+ S++E DDSESLVESEDD EEDS+ DSEE++GKT
Sbjct: 957 EVSDSDSENSQESDQGYEPSDVQSDTGSEEEGDDSESLVESEDDVEEDSDGDSEEEQGKT 1016
Query: 1019 WEELEREASYADREKGADSDSEDERKRRKMKAFGKARAPEKRNPGGSLPKRAKLR 1073
WEELEREAS ADREKG +SDSE+ERKRRKMKAFGKAR PEKR+ GSLPKR KLR
Sbjct: 1017 WEELEREASNADREKGDESDSEEERKRRKMKAFGKARVPEKRSTRGSLPKRPKLR 1071
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543004|ref|XP_002512565.1| FACT complex subunit SPT16, putative [Ricinus communis] gi|223548526|gb|EEF50017.1| FACT complex subunit SPT16, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224124958|ref|XP_002319467.1| global transcription factor group [Populus trichocarpa] gi|222857843|gb|EEE95390.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147775767|emb|CAN64799.1| hypothetical protein VITISV_017318 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147775766|emb|CAN64798.1| hypothetical protein VITISV_017317 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225450478|ref|XP_002280582.1| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224122844|ref|XP_002318930.1| global transcription factor group [Populus trichocarpa] gi|222857306|gb|EEE94853.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356569402|ref|XP_003552890.1| PREDICTED: FACT complex subunit SPT16-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449433555|ref|XP_004134563.1| PREDICTED: FACT complex subunit SPT16-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224124374|ref|XP_002330007.1| global transcription factor group [Populus trichocarpa] gi|222871432|gb|EEF08563.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1073 | ||||||
| TAIR|locus:2132756 | 1074 | SPT16 "global transcription fa | 0.986 | 0.985 | 0.685 | 0.0 | |
| ZFIN|ZDB-GENE-031118-96 | 1077 | supt16h "suppressor of Ty 16 h | 0.712 | 0.710 | 0.387 | 1.8e-183 | |
| UNIPROTKB|E1BNP8 | 1047 | SUPT16H "Uncharacterized prote | 0.845 | 0.866 | 0.382 | 1.5e-177 | |
| UNIPROTKB|E2REU7 | 1047 | SUPT16H "Uncharacterized prote | 0.845 | 0.866 | 0.381 | 2.4e-177 | |
| UNIPROTKB|Q9Y5B9 | 1047 | SUPT16H "FACT complex subunit | 0.845 | 0.866 | 0.381 | 2.4e-177 | |
| MGI|MGI:1890948 | 1047 | Supt16 "suppressor of Ty 16" [ | 0.845 | 0.866 | 0.380 | 4e-177 | |
| UNIPROTKB|F1S8K5 | 1048 | SUPT16H "Uncharacterized prote | 0.845 | 0.865 | 0.381 | 6.5e-177 | |
| RGD|1310032 | 1047 | Supt16h "suppressor of Ty 16 h | 0.845 | 0.866 | 0.381 | 6.5e-177 | |
| DICTYBASE|DDB_G0282677 | 1072 | spt16 "FACT complex subunit SP | 0.850 | 0.851 | 0.378 | 2.2e-174 | |
| POMBASE|SPBP8B7.19 | 1019 | spt16 "FACT complex subunit Sp | 0.845 | 0.890 | 0.376 | 3e-170 |
| TAIR|locus:2132756 SPT16 "global transcription factor C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3836 (1355.4 bits), Expect = 0., P = 0.
Identities = 731/1067 (68%), Positives = 867/1067 (81%)
Query: 1 MAEHQNSTVK-PAAGKPSGNAAANTYAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAV 59
MA+ +N + P +G P A NTY+I++ NF R + LY HW +H++DLWG ++ALA+
Sbjct: 1 MADSRNGNARAPPSGVPP--KAGNTYSIDVKNFISRARALYEHWKKHSADLWGSADALAI 58
Query: 60 ATPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEA 119
ATPP S+DLRYLKSSALN+WL+GYEFP+TIMVF KKQIHFLCS+ KASLLEV+KK A +
Sbjct: 59 ATPPASDDLRYLKSSALNIWLLGYEFPDTIMVFTKKQIHFLCSRNKASLLEVVKKPAHDE 118
Query: 120 VGIEVVIHVKGKTDDGSGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEK 179
+ ++V++HVK K DDG+GLMD IF A+ D S+ G +S VVGHI+REAPEGKLLETW E+
Sbjct: 119 LKLDVIMHVKPKGDDGTGLMDAIFRAIRDLSRGDGNDSQVVGHIAREAPEGKLLETWTER 178
Query: 180 LKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVS 239
LK ANF D++ G SDLFA+KDDTE+ ++KKAA+L+ SVMK VVP LE IDEEK V+
Sbjct: 179 LKNANFQFVDITGGLSDLFAVKDDTEVMSVKKAAYLAYSVMKNVVVPNLESAIDEEKDVT 238
Query: 240 HSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTS 299
HS+LMD TEKAILEP + VKLK ENVDICYPPIFQSGG+FDLKPSA+SND L YD S
Sbjct: 239 HSALMDLTEKAILEPTKASVKLKPENVDICYPPIFQSGGKFDLKPSAASNDELLTYDPAS 298
Query: 300 VIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAA 359
+IICAVG+RYNSYCSNVART+LIDA ++QSKAYEVLLKAHEAAI AL+SG K++ Y+AA
Sbjct: 299 IIICAVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAAIDALRSGRKINTVYQAA 358
Query: 360 STVVEKDAPELAANLTRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTE 419
+VVEK+APE LT++AGTGIGLEFRESGL++NAKND++L+ M FNVSLGFQNL+ E
Sbjct: 359 LSVVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECE 418
Query: 420 NKN-PKTQKFSVLLADTVIVGEKVPDIVTSKSSKAVKDVAYSFNEDDEEEEQPKVKAEVK 478
+++ K +KFS+LLADTV+V ++ P+++T K SK+VKDVAYSF ED EEEE+P+ KA
Sbjct: 419 SESRSKNKKFSLLLADTVLVTDQKPELLT-KCSKSVKDVAYSFKED-EEEEKPRKKARTS 476
Query: 479 GGEPTLSKATLRSDHQEMSKEELRRQHQAELARQKNEETARRLAGGGSSTADNRGSVKTI 538
G E ++K LRSD +SKEELR+QHQAELARQKNEETARRLAG S D+R + KT
Sbjct: 477 GSENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTS 536
Query: 539 GDLVAYKNVNDLPPPRDLMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYI 598
D+VAYKNVND+P ++LMIQVD +NEA+LLPIYGS+VPFHVAT+++VS QDTNR+CYI
Sbjct: 537 ADVVAYKNVNDMPH-KELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCYI 595
Query: 599 RIIFNVPGTSFTPHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQIKTLRRQVTSRESE 658
RIIFNVPGT F PHDSNSLK QG+IYLKEVS R+KDSRH SEV QQIKTLRRQV +RESE
Sbjct: 596 RIIFNVPGTPFNPHDSNSLKNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESE 655
Query: 659 RAERATLVTQEKLQLASAKFKPLKLFDLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPD 718
RAERATLVTQEKLQLA KFKPL+L +LWIRPPF GR +K+ G+LEAH NGFRYST+RPD
Sbjct: 656 RAERATLVTQEKLQLAGNKFKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPD 714
Query: 719 ERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEVMDVVQTLGGG 778
ERVDV++ NIKHAFFQPAE+EMITLLHFHLHNHIMVG KKTKDVQFY+EVMDVVQ+LGGG
Sbjct: 715 ERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGG 774
Query: 779 KRSAYDPDEVEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFH 838
+RSAYDPDE++EEQRER RKNKINMDF +F NRVND+W PQF + DLEFDQPLRELGFH
Sbjct: 775 RRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFH 834
Query: 839 GVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRD 898
GVPHK SAFI+PTSSCLVELIE PF+V++LSEIEIVNLERVG GQKNFDM I+FKDFK+D
Sbjct: 835 GVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKD 894
Query: 899 VLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNM 958
VLR+DS+P+SSL+GIKEWLDTTD+KYYES+LNLNWR ILKTITDDP+ FI+DGGWEFLN+
Sbjct: 895 VLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNL 954
Query: 959 EAXXXXXXXXXXXXXGYEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKT 1018
+ GYEP KGKT
Sbjct: 955 DGSDSESGGSEESDKGYEPSDVEVESESEDEASESESLVESDDDEEEDSEQESEEEKGKT 1014
Query: 1019 WEELEREASYADREKGADSDSEDERKRRKMKAFGKARAPEKRNPGGS 1065
W+ELEREA+ ADRE G +SDSE+ERKRRKMKAFGK+R P GGS
Sbjct: 1015 WDELEREATNADREHGVESDSEEERKRRKMKAFGKSR-PGTSGGGGS 1060
|
|
| ZFIN|ZDB-GENE-031118-96 supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BNP8 SUPT16H "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2REU7 SUPT16H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y5B9 SUPT16H "FACT complex subunit SPT16" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1890948 Supt16 "suppressor of Ty 16" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S8K5 SUPT16H "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|1310032 Supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0282677 spt16 "FACT complex subunit SPT16" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBP8B7.19 spt16 "FACT complex subunit Spt16" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P32558 | SPT16_YEAST | No assigned EC number | 0.3270 | 0.8993 | 0.9323 | yes | no |
| Q8H6B1 | SPT16_MAIZE | No assigned EC number | 0.7244 | 0.9729 | 0.9895 | N/A | no |
| Q6C931 | SPT16_YARLI | No assigned EC number | 0.3435 | 0.9012 | 0.9641 | yes | no |
| Q6BXE5 | SPT16_DEBHA | No assigned EC number | 0.3436 | 0.9049 | 0.9399 | yes | no |
| Q8IRG6 | SPT16_DROME | No assigned EC number | 0.3672 | 0.9170 | 0.9085 | yes | no |
| Q920B9 | SP16H_MOUSE | No assigned EC number | 0.3765 | 0.9058 | 0.9283 | yes | no |
| Q54S43 | SPT16_DICDI | No assigned EC number | 0.3706 | 0.8583 | 0.8591 | yes | no |
| Q00976 | SPT16_KLULA | No assigned EC number | 0.3326 | 0.8145 | 0.8460 | yes | no |
| Q7X923 | SPT16_ORYSJ | No assigned EC number | 0.7324 | 0.9804 | 0.9962 | yes | no |
| Q4HYB8 | SPT16_GIBZE | No assigned EC number | 0.34 | 0.9235 | 0.9584 | yes | no |
| Q4WJ02 | SPT16_ASPFU | No assigned EC number | 0.3358 | 0.9179 | 0.9666 | yes | no |
| Q9Y5B9 | SP16H_HUMAN | No assigned EC number | 0.3794 | 0.9058 | 0.9283 | yes | no |
| P0CQ22 | SPT16_CRYNJ | No assigned EC number | 0.3460 | 0.9002 | 0.9333 | yes | no |
| Q6FWT4 | SPT16_CANGA | No assigned EC number | 0.3353 | 0.8313 | 0.8685 | yes | no |
| Q5B2X8 | SPT16_EMENI | No assigned EC number | 0.3432 | 0.9161 | 0.9646 | yes | no |
| Q2UBF1 | SPT16_ASPOR | No assigned EC number | 0.3345 | 0.9254 | 0.9529 | yes | no |
| Q9N5R9 | SPT16_CAEEL | No assigned EC number | 0.3634 | 0.9235 | 0.9621 | yes | no |
| O94267 | SPT16_SCHPO | No assigned EC number | 0.3697 | 0.9245 | 0.9735 | yes | no |
| Q756A7 | SPT16_ASHGO | No assigned EC number | 0.3330 | 0.8993 | 0.9359 | yes | no |
| O82491 | SPT16_ARATH | No assigned EC number | 0.7190 | 0.9776 | 0.9767 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
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 |
 | gw1.131.155.1 | annotation not avaliable (1052 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1073 | |||
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.0 | |
| cd01091 | 243 | cd01091, CDC68-like, Related to aminopeptidase P a | 2e-97 | |
| pfam08644 | 152 | pfam08644, SPT16, FACT complex subunit (SPT16/CDC6 | 6e-67 | |
| pfam08512 | 93 | pfam08512, Rtt106, Histone chaperone Rttp106-like | 2e-27 | |
| pfam00557 | 208 | pfam00557, Peptidase_M24, Metallopeptidase family | 9e-27 | |
| COG0006 | 384 | COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid | 7e-20 | |
| cd01066 | 207 | cd01066, APP_MetAP, A family including aminopeptid | 3e-19 | |
| cd01092 | 208 | cd01092, APP-like, Similar to Prolidase and Aminop | 5e-15 | |
| PRK09795 | 361 | PRK09795, PRK09795, aminopeptidase; Provisional | 8e-07 | |
| cd01087 | 243 | cd01087, Prolidase, Prolidase | 1e-05 | |
| pfam04931 | 784 | pfam04931, DNA_pol_phi, DNA polymerase phi | 1e-04 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 1e-04 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 3e-04 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 4e-04 | |
| cd01086 | 238 | cd01086, MetAP1, Methionine Aminopeptidase 1 | 6e-04 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 8e-04 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 8e-04 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.001 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 0.004 |
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Score = 649 bits (1675), Expect = 0.0
Identities = 356/1026 (34%), Positives = 551/1026 (53%), Gaps = 53/1026 (5%)
Query: 25 YAINLDNFSKRLKMLYSHWTEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVGYE 84
I+ + F KR + L H E + G ++L V + Y K++AL++WL+GYE
Sbjct: 4 IRIDEERFEKRSRDLRKHLNEED----GGPDSLLVMLGKSQDVNPYQKNTALHIWLLGYE 59
Query: 85 FPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEAVGIEVVIHVKGKTDDGSGLMDKIFG 144
FPET+++ S+KKA LL+ + + + ++ L
Sbjct: 60 FPETLIILDDVCTAITTSKKKAILLQKGLAETSLNIVVRNKDNRTKNMEENKKLFKGSIY 119
Query: 145 AVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLK--KANFALSDVSNGFSDLFAIKD 202
+ ++K +VG ++ +GK + W+ + K+ F SDVS G S +F KD
Sbjct: 120 VIGSENK-------IVGDFCKDVLQGKFINEWDSIFEPVKSEFNASDVSLGLSKMFLTKD 172
Query: 203 DTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKV--- 259
E+ N + ++ SS +M+ FV ++E + D K++H L D E I + +
Sbjct: 173 AEEIANCRASSAASSVLMRYFV-KEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSL 231
Query: 260 ---KLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCSNV 316
+ + ++ CY PI QSGG DL PSA S L D V++ ++G RYN YCSN+
Sbjct: 232 KLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSFPMELTGD---VVLLSIGIRYNGYCSNM 288
Query: 317 ARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLTR 376
+RT L D ++ Q K YE L + + ++ G Y A + + PEL N
Sbjct: 289 SRTILTDPDSEQQKNYEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGPNFIY 348
Query: 377 NAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTV 436
N G IG+EFR S N KN R+L+AG +FN+SLGF NL N +PK +++LL DT
Sbjct: 349 NVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISLGFGNLI--NPHPKNN-YALLLIDTE 405
Query: 437 IVGEKVPDIVTSKSSKAVKDVAYSFNEDDEEEEQ--PKVKAEVKGGEPTLS-KATLRSDH 493
+ P IV + S KA D+++ F EDDE E + KA + S ++ R +
Sbjct: 406 QISLSNP-IVFTDSPKAQGDISFLFGEDDETPEYLTLQDKAPDFLDKTISSHRSKFRDET 464
Query: 494 Q--EMSKEELRRQHQAELARQKNEETARRLAGGGSSTADNRGSVKTIGDLVAYKNVNDLP 551
+ E++ + R +HQ EL + EE R + D+ K+ + +Y + LP
Sbjct: 465 REHELNARKKRVEHQKELLDKIIEEGLERFRNASDAGPDSIEE-KSEKRIESYSRDSQLP 523
Query: 552 PP-RDLMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYIRIIFNVPGTSFT 610
+L I VD ++I+LPI G VPFH++++K+ S + N Y+R+ F PG
Sbjct: 524 RQIGELRIIVDFARQSIILPIGGRPVPFHISSIKNASKNDEGNFV-YLRLNFKSPGKGGG 582
Query: 611 PHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQIKTLRRQVTSRESERAERATLVTQEK 670
+ + +G +L+ ++ RS +S++ ++I L++ T RE+ER E A ++ Q+K
Sbjct: 583 KTEELPCEQRGEQFLRSITSRSIRGNRMSDLFKEINDLKKGATKRETERKEDADVLEQDK 642
Query: 671 LQLASAKFKPLKLFDLWIRPPFGGRGRKLTGSLEAHTNGFRY-STSRPDERVDVMYGNIK 729
L + +RP G G++ G+LE H NG R+ S R D +D+++ NIK
Sbjct: 643 LIERKLS-RTDVYMKTDVRP--GSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILFSNIK 699
Query: 730 HAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEVMD--VVQTLGGGKRSAY-DPD 786
H FFQ E+I ++HFHL + I+ G +K +DVQFY E D V +T G++ Y D D
Sbjct: 700 HLFFQECNGELIVIIHFHLKSPILTGKRKVQDVQFYREASDTMVDETGKRGRKEHYGDED 759
Query: 787 EVEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASA 846
E+E+EQ ER R+ ++ +F++F + + + +EF R+LGF+GVP ++S
Sbjct: 760 ELEQEQEERRRRAALDQEFKSFASSIAEA------SEGRIEFKVQFRKLGFYGVPFRSSV 813
Query: 847 FIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIP 906
I PT+ CLV+L E PF VITL E+EIVNLERV G KNFD+ + +DF R ++ I+++P
Sbjct: 814 MIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQFGLKNFDVVFILRDFYRPLVHINTVP 873
Query: 907 SSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEASDSESE 966
SLD +KEWLD+ D+ + E+ NLNW I+K+I DP F EDGGW FL M SD ES+
Sbjct: 874 VESLDKLKEWLDSNDILFMETSANLNWNTIMKSIMKDPISFFEDGGWSFL-MVGSDDESD 932
Query: 967 NSQDSDQGYEPSDVQSDSVSDDENDDSESLVESEDDEEEDSEEDSEEDK-GKTWEELERE 1025
S++ YE S D SD+ ++D ES SED E++SE DS +++ G+ W+ELE +
Sbjct: 933 ESEEEVSEYEASS---DDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESK 989
Query: 1026 ASYADR 1031
A+Y R
Sbjct: 990 AAYDSR 995
|
Length = 1001 |
| >gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor | Back alignment and domain information |
|---|
| >gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68) | Back alignment and domain information |
|---|
| >gnl|CDD|219876 pfam08512, Rtt106, Histone chaperone Rttp106-like | Back alignment and domain information |
|---|
| >gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24 | Back alignment and domain information |
|---|
| >gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase | Back alignment and domain information |
|---|
| >gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P | Back alignment and domain information |
|---|
| >gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238520 cd01087, Prolidase, Prolidase | Back alignment and domain information |
|---|
| >gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
| >gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1 | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1073 | |||
| KOG1189 | 960 | consensus Global transcriptional regulator, cell d | 100.0 | |
| COG5406 | 1001 | Nucleosome binding factor SPN, SPT16 subunit [Tran | 100.0 | |
| PF08644 | 152 | SPT16: FACT complex subunit (SPT16/CDC68); InterPr | 100.0 | |
| PRK09795 | 361 | aminopeptidase; Provisional | 100.0 | |
| TIGR02993 | 391 | ectoine_eutD ectoine utilization protein EutD. Mem | 100.0 | |
| COG0006 | 384 | PepP Xaa-Pro aminopeptidase [Amino acid transport | 100.0 | |
| PRK10879 | 438 | proline aminopeptidase P II; Provisional | 100.0 | |
| PRK14575 | 406 | putative peptidase; Provisional | 100.0 | |
| PRK14576 | 405 | putative endopeptidase; Provisional | 100.0 | |
| cd01091 | 243 | CDC68-like Related to aminopeptidase P and aminope | 100.0 | |
| PRK15173 | 323 | peptidase; Provisional | 100.0 | |
| PRK13607 | 443 | proline dipeptidase; Provisional | 100.0 | |
| KOG2414 | 488 | consensus Putative Xaa-Pro aminopeptidase [Amino a | 100.0 | |
| PRK07281 | 286 | methionine aminopeptidase; Reviewed | 100.0 | |
| PRK12897 | 248 | methionine aminopeptidase; Reviewed | 100.0 | |
| PRK12318 | 291 | methionine aminopeptidase; Provisional | 100.0 | |
| TIGR00500 | 247 | met_pdase_I methionine aminopeptidase, type I. Met | 100.0 | |
| PRK05716 | 252 | methionine aminopeptidase; Validated | 100.0 | |
| PRK12896 | 255 | methionine aminopeptidase; Reviewed | 100.0 | |
| cd01090 | 228 | Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. | 100.0 | |
| PLN03158 | 396 | methionine aminopeptidase; Provisional | 100.0 | |
| cd01087 | 243 | Prolidase Prolidase. E.C. 3.4.13.9. Also known as | 100.0 | |
| KOG2737 | 492 | consensus Putative metallopeptidase [General funct | 100.0 | |
| cd01092 | 208 | APP-like Similar to Prolidase and Aminopeptidase P | 100.0 | |
| cd01086 | 238 | MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 | 100.0 | |
| PF00557 | 207 | Peptidase_M24: Metallopeptidase family M24 This Pr | 100.0 | |
| KOG0526 | 615 | consensus Nucleosome-binding factor SPN, POB3 subu | 100.0 | |
| cd01085 | 224 | APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also | 100.0 | |
| cd01066 | 207 | APP_MetAP A family including aminopeptidase P, ami | 100.0 | |
| cd01089 | 228 | PA2G4-like Related to aminopepdidase M, this famil | 99.97 | |
| COG5165 | 508 | POB3 Nucleosome-binding factor SPN, POB3 subunit [ | 99.97 | |
| COG0024 | 255 | Map Methionine aminopeptidase [Translation, riboso | 99.97 | |
| KOG2738 | 369 | consensus Putative methionine aminopeptidase [Post | 99.96 | |
| PTZ00053 | 470 | methionine aminopeptidase 2; Provisional | 99.95 | |
| TIGR00495 | 389 | crvDNA_42K 42K curved DNA binding protein. Protein | 99.95 | |
| KOG2413 | 606 | consensus Xaa-Pro aminopeptidase [Amino acid trans | 99.94 | |
| PRK08671 | 291 | methionine aminopeptidase; Provisional | 99.94 | |
| TIGR00501 | 295 | met_pdase_II methionine aminopeptidase, type II. M | 99.94 | |
| cd01088 | 291 | MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 | 99.93 | |
| PF14826 | 163 | FACT-Spt16_Nlob: FACT complex subunit SPT16 N-term | 99.91 | |
| PF08512 | 95 | Rtt106: Histone chaperone Rttp106-like; InterPro: | 99.87 | |
| PF03531 | 222 | SSrecog: Structure-specific recognition protein (S | 99.21 | |
| PF01321 | 132 | Creatinase_N: Creatinase/Prolidase N-terminal doma | 98.92 | |
| KOG2776 | 398 | consensus Metallopeptidase [General function predi | 98.58 | |
| KOG2775 | 397 | consensus Metallopeptidase [General function predi | 98.55 | |
| PF05195 | 134 | AMP_N: Aminopeptidase P, N-terminal domain; InterP | 97.25 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.79 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 96.65 | |
| PLN03158 | 396 | methionine aminopeptidase; Provisional | 96.64 | |
| cd01086 | 238 | MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 | 96.56 | |
| KOG2413 | 606 | consensus Xaa-Pro aminopeptidase [Amino acid trans | 96.41 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 96.39 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.27 | |
| PRK05716 | 252 | methionine aminopeptidase; Validated | 96.1 | |
| KOG3064 | 303 | consensus RNA-binding nuclear protein (MAK16) cont | 95.86 | |
| PRK12896 | 255 | methionine aminopeptidase; Reviewed | 95.53 | |
| cd01088 | 291 | MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 | 95.39 | |
| KOG2738 | 369 | consensus Putative methionine aminopeptidase [Post | 95.03 | |
| COG0024 | 255 | Map Methionine aminopeptidase [Translation, riboso | 94.99 | |
| KOG0526 | 615 | consensus Nucleosome-binding factor SPN, POB3 subu | 94.76 | |
| KOG1189 | 960 | consensus Global transcriptional regulator, cell d | 94.63 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 93.87 | |
| PF05764 | 240 | YL1: YL1 nuclear protein; InterPro: IPR008895 The | 93.72 | |
| TIGR00495 | 389 | crvDNA_42K 42K curved DNA binding protein. Protein | 93.67 | |
| PRK08671 | 291 | methionine aminopeptidase; Provisional | 93.06 | |
| TIGR00501 | 295 | met_pdase_II methionine aminopeptidase, type II. M | 93.01 | |
| PF00557 | 207 | Peptidase_M24: Metallopeptidase family M24 This Pr | 92.22 | |
| TIGR00500 | 247 | met_pdase_I methionine aminopeptidase, type I. Met | 91.97 | |
| KOG3064 | 303 | consensus RNA-binding nuclear protein (MAK16) cont | 91.82 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 91.57 | |
| PF04147 | 840 | Nop14: Nop14-like family ; InterPro: IPR007276 Emg | 91.53 | |
| PTZ00053 | 470 | methionine aminopeptidase 2; Provisional | 91.43 | |
| KOG2038 | 988 | consensus CAATT-binding transcription factor/60S r | 91.27 | |
| cd01089 | 228 | PA2G4-like Related to aminopepdidase M, this famil | 90.65 | |
| cd01087 | 243 | Prolidase Prolidase. E.C. 3.4.13.9. Also known as | 90.64 | |
| cd01092 | 208 | APP-like Similar to Prolidase and Aminopeptidase P | 90.55 | |
| PF04147 | 840 | Nop14: Nop14-like family ; InterPro: IPR007276 Emg | 90.36 | |
| PRK12897 | 248 | methionine aminopeptidase; Reviewed | 90.35 | |
| KOG2038 | 988 | consensus CAATT-binding transcription factor/60S r | 90.16 | |
| COG5406 | 1001 | Nucleosome binding factor SPN, SPT16 subunit [Tran | 89.19 | |
| cd01066 | 207 | APP_MetAP A family including aminopeptidase P, ami | 87.48 | |
| PF02724 | 622 | CDC45: CDC45-like protein; InterPro: IPR003874 CDC | 86.38 | |
| PTZ00007 | 337 | (NAP-L) nucleosome assembly protein -L; Provisiona | 84.99 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 84.96 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 84.88 | |
| PF05285 | 324 | SDA1: SDA1; InterPro: IPR007949 This domain consis | 84.02 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 83.86 | |
| PF13104 | 45 | DUF3956: Protein of unknown function (DUF3956) | 83.5 | |
| PRK12318 | 291 | methionine aminopeptidase; Provisional | 83.44 | |
| PF09026 | 101 | CENP-B_dimeris: Centromere protein B dimerisation | 82.46 | |
| PRK07281 | 286 | methionine aminopeptidase; Reviewed | 81.88 | |
| cd01085 | 224 | APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also | 81.26 | |
| PRK09795 | 361 | aminopeptidase; Provisional | 80.91 | |
| cd01090 | 228 | Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. | 80.32 | |
| PF05764 | 240 | YL1: YL1 nuclear protein; InterPro: IPR008895 The | 80.32 |
| >KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-245 Score=2074.90 Aligned_cols=942 Identities=50% Similarity=0.820 Sum_probs=859.5
Q ss_pred EeCCCCCCcccccccccceEeecCCcCCcEEEEEeCCcEEEEEeCCccchHHHHHhh---cccccceEEEEEeCCCCCCC
Q 001468 59 VATPPVSEDLRYLKSSALNVWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVIKKS---AKEAVGIEVVIHVKGKTDDG 135 (1073)
Q Consensus 59 i~~g~~~~~~~Y~ks~al~~wLtGye~p~tlll~t~~~~~ll~s~kK~~~le~~~~~---~~~~~~vei~~~~kd~~d~~ 135 (1073)
++.|..+++++|+|++|++.||+||++|+|++|++++.++|+|+.+|+.+++.+... ....+.+.++++.+ .+.+
T Consensus 2 v~~G~s~dd~~Y~KssAL~~WLlGYEfpdTilv~~~~~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k--~d~n 79 (960)
T KOG1189|consen 2 VVVGVSEDDNPYQKSSALFTWLLGYEFPDTILVLCKDKIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDK--NDDN 79 (960)
T ss_pred eeecccccccchhHHHHHHHHHhccccCceEEEEecCcEEEEecchhHHHHHhhcccccCcccCcceEEEeccc--Cccc
Confidence 344544678999999999999999999999999999999999999999999886432 22356788888843 3333
Q ss_pred CChHHHHHHHhhhcccCCCCCCCEEEEeCCCCCcHHHHHHHHHHHhhcCceEEeCCcccccccccCCHHHHHHHHHHHHH
Q 001468 136 SGLMDKIFGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKANFALSDVSNGFSDLFAIKDDTELTNIKKAAFL 215 (1073)
Q Consensus 136 ~~~~~~l~~~Lk~~~~~~~~~~~rIGv~~kd~~~g~~~~~l~~~l~~~~~e~vDvs~~l~~lR~VKd~~EI~~iR~Aa~i 215 (1073)
+.+|++|+++|+ .++++||+..++.++|.|+..|...|...++..+|++..|+.+.+||++.||++||+|+++
T Consensus 80 ~~~fdkii~~ik-------~~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~ 152 (960)
T KOG1189|consen 80 KGLFDKIIKAIK-------SAGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAA 152 (960)
T ss_pred cccHHHHHHHHH-------hcCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHH
Confidence 488999999999 3799999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHccchhhhhcccCCCCCCCCCeEEeCCCCCCCCCCcCCCccccc
Q 001468 216 SSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVKLKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYY 295 (1073)
Q Consensus 216 a~~a~~~~~~~~i~~iid~e~GvtE~eLa~~ie~~l~~~gk~~~~~g~~~~~~~y~piV~SG~n~~l~~h~~~~dr~L~~ 295 (1073)
+..+|.+++.+.+..+||+++.|||+.|+..++.++.+ .++..++++..++|||+||+|||++|+|+|++.++++.|
T Consensus 153 s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~-~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~~~~L-- 229 (960)
T KOG1189|consen 153 SSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIED-KKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSDDNHL-- 229 (960)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-cccCcccCccccccccChhhhcCCccccccccccccccc--
Confidence 99999999999999999999999999999999999975 366667788888999999999999999999999999999
Q ss_pred CCcceEEEeeceeeCCeEeeeEEEEEecCChHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccccC
Q 001468 296 DSTSVIICAVGSRYNSYCSNVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANLT 375 (1073)
Q Consensus 296 G~~dvI~vdlG~~y~GY~sditRT~~VgPs~eq~~~y~~llea~~a~i~~lkPGvt~~dV~~aa~~~l~~~Gp~l~~~~~ 375 (1073)
| +|+|++|+||++||||++|||+|+|+.+|+++|++++.||.++++.||||++.++||.++.+++++.+|+|.+.|+
T Consensus 230 ~---~I~cs~G~RynsYCSNv~RT~Lidpssemq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~ 306 (960)
T KOG1189|consen 230 H---VILCSLGIRYNSYCSNVSRTYLIDPSSEMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFT 306 (960)
T ss_pred c---eEEeeccchhhhhhccccceeeecchHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhh
Confidence 4 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccCCCcccCCCCceecCCcEEEEeeccccccCCCCCCCCCeeeEEEEEEEEEeCCCc-eecccccccch
Q 001468 376 RNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQTENKNPKTQKFSVLLADTVIVGEKVP-DIVTSKSSKAV 454 (1073)
Q Consensus 376 h~~GHgIGle~~E~p~~l~~~~~~~L~~GMVf~IEpG~~~l~~~~~~~~~~~~gvriEDTVlVte~G~-evLT~~~pk~l 454 (1073)
+++|+||||+|+|+.++|+++|+++|++||||+|..||.+|+++... +.|++.|.|||+|+++++ ++||. +++..
T Consensus 307 k~lG~~iGlEFREssl~inaKnd~~lk~gmvFni~lGf~nl~n~~~~---~~yaL~l~DTvlv~e~~p~~vLT~-~~K~~ 382 (960)
T KOG1189|consen 307 KNLGFGIGLEFRESSLVINAKNDRVLKKGMVFNISLGFSNLTNPESK---NSYALLLSDTVLVGEDPPAEVLTD-SAKAV 382 (960)
T ss_pred hhcccccceeeecccccccccchhhhccCcEEEEeeccccccCcccc---cchhhhccceeeecCCCcchhhcc-cchhh
Confidence 99999999999999999999999999999999999999999886642 349999999999999998 99996 99999
Q ss_pred hhhccccCCchhh-hc-cc--ccc-ccccCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 001468 455 KDVAYSFNEDDEE-EE-QP--KVK-AEVKGGEPTLSKATLRSDHQEMSKEELRRQHQAELARQKNEETARRLAGGGSSTA 529 (1073)
Q Consensus 455 ~~I~~~~~d~~~~-~~-~~--~~~-~~~~~~~~~~~~~~~r~~~~~~~~e~~r~~~Q~eL~~~~~~e~~~r~~~~~~~~~ 529 (1073)
.+|+|+|++++++ +. ++ ..+ ++.+.+.. ++..++|++. ++|++|++|||||++|+|+|+++||+++ ++
T Consensus 383 ~dv~~~f~~eeeE~~~~~k~~~~~~~~r~~r~a-~l~~k~R~e~---~~ee~RKehQkeLa~qlnee~~~Rls~~---s~ 455 (960)
T KOG1189|consen 383 KDVSYFFKDEEEEEELEKKDPATKVLGRGTRTA-LLTDKTRNET---SAEEKRKEHQKELADQLNEEALRRLSNQ---SG 455 (960)
T ss_pred cccceeeccchhhhhhhhccccccccCccccch-hccccccccc---cHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 9999999988775 22 11 111 22234444 8999999998 8999999999999999999999999987 45
Q ss_pred CCCCceeeccceeecCCCCCCCCCC-CceEEEeccCCEEEEeeCccccceeeeeeeeeeccccCCCeeEEEEEeecCCCC
Q 001468 530 DNRGSVKTIGDLVAYKNVNDLPPPR-DLMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRSCYIRIIFNVPGTS 608 (1073)
Q Consensus 530 ~~~~~~~~~~~~~sy~~~~~~P~~~-~~~i~vD~~~~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~ 608 (1073)
.++.++|..++++||++++|||+++ +|+||||++++||||||||+||||||+||||+|+++| |+||||||||++||++
T Consensus 456 ~s~~~~ks~k~~vsYk~~s~mP~~i~el~i~VD~k~esvilPI~g~~VPFHistikn~s~~~e-g~~tYLRinF~~pg~~ 534 (960)
T KOG1189|consen 456 DSKDEEKSRKRIVSYKRESQMPREIRELRIYVDKKYESVILPIFGIPVPFHISTIKNASQNVE-GDYTYLRINFNTPGSP 534 (960)
T ss_pred CccchhhhhhccccccchhhcchhhhheEEEEecccceEEEeecCcccceehhhhhccccccc-CceeEEEEEecCCCCC
Confidence 5556668899999999999999999 9999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCcCCCCcceEEEEEeeeCCcchHHHHHHHHHHHHHHHhhhHHHHHHhhccccccceeeccCCCCccccccccc
Q 001468 609 FTPHDSNSLKFQGSIYLKEVSLRSKDSRHISEVVQQIKTLRRQVTSRESERAERATLVTQEKLQLASAKFKPLKLFDLWI 688 (1073)
Q Consensus 609 ~~~~~~~~~~~~~~~fikelt~rs~d~~~~~~~~~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~~~~~ 688 (1073)
.|+.+..+|++|+|+|||||||||+|++|++++||+||+|||++++||+|+++++++|+||+|++++++++| +|+||||
T Consensus 535 ~g~~e~~~~~~~~a~flkeit~rs~~~~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p-~L~dlyi 613 (960)
T KOG1189|consen 535 GGKNEELPFENPGAQFLKEITFRSSNGKRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNP-KLKDLYI 613 (960)
T ss_pred CCCCCCCcCCCchhhhhhheeeeecCCcchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCC-chhheEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCCCCCcccccceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceecceeeEEEEe
Q 001468 689 RPPFGGRGRKLTGSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYIEV 768 (1073)
Q Consensus 689 rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~dvQF~~e~ 768 (1073)
||+|.| ||++|+||||+|||||+| .|+++|||||+||||+|||||++|||+||||||++|||+||||+.|||||+||
T Consensus 614 Rp~i~~--Kr~~G~lEaH~NGfRy~s-~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~dVQFY~Ev 690 (960)
T KOG1189|consen 614 RPNIDT--KRIPGSLEAHENGFRYQS-LRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTKDVQFYREV 690 (960)
T ss_pred cCCccc--cccccceeeecCceeeee-ccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccceeeeeeeehh
Confidence 999999 999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCCCceeeccCcccceeecccCceeee
Q 001468 769 MDVVQTLGGGKRSAYDPDEVEEEQRERARKNKINMDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFI 848 (1073)
Q Consensus 769 ~~~~~~~~~~r~~~~d~de~~~eq~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~f~~p~~~l~f~g~~~~~~~~l 848 (1073)
++++.|++++| ||+|+|||++||+||++|++||.+|+.||.+|.+++ ...++|++|||+|||+|||+|++|+|
T Consensus 691 ~div~dlg~~~-~~~D~del~~EQ~Er~rr~~ln~~FksF~~kv~~~~------~~~~efd~pfr~lGF~GvP~rssv~i 763 (960)
T KOG1189|consen 691 GDIVTDLGKRR-RMGDRDELEQEQEERDRRAKLNMAFKSFAEKVAEAT------ESELEFDVPFRELGFNGVPFRSSVFI 763 (960)
T ss_pred hhHHHhhccCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccceeeccchhhcCcCCCCccceeee
Confidence 99977777665 479999999999999999999999999999997743 35699999999999999999999999
Q ss_pred eeCcccceeeccCCcEEEEcCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChhhHHHHhhcCCceeeecc
Q 001468 849 VPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESR 928 (1073)
Q Consensus 849 ~pt~~clv~l~e~P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e~~ 928 (1073)
+||++|||+|+|||||||||+|||+||||||||++|||||+||||||+++|++|++||+++||.||+||++|||+|+||+
T Consensus 764 ~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~ 843 (960)
T KOG1189|consen 764 QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGV 843 (960)
T ss_pred ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEeccccccceeeeccchhhhhHHHHhhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhhhccCchhhhhcCCcccccCCCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccc
Q 001468 929 LNLNWRPILKTITDDPEKFIEDGGWEFLNMEASDS--ESENSQDSDQGYEPSDVQSDSVSDDENDDSESLVESEDDEEED 1006 (1073)
Q Consensus 929 ~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~~~~--~~~~~e~~d~~~e~~~~e~~~~~~~~~~~~d~~~~~~~~~~e~ 1006 (1073)
+||||++|||||++||.+||++|||+||+.+++|+ +.++++++++.|+++|+|.++++++|+++++ ++++|++++
T Consensus 844 ~sLNW~~ImKTI~dDP~~Ffe~GgW~fL~~~~sdsee~~~ese~e~~~y~psd~~v~~eS~ed~e~sE---~s~~de~~d 920 (960)
T KOG1189|consen 844 QSLNWTKIMKTITDDPIAFFEDGGWSFLNVESSDSEEGGDESEEEDSAYEPSDDDVSDESDEDEEESE---ESEEDEEDD 920 (960)
T ss_pred ccccHHHHhhhhccCHHHHHhcCCeeeecCCCCcccccccccccccccCCccccCccccccccccccc---ccccccccc
Confidence 99999999999999999999999999999987543 3345566789999998877666554443333 222222233
Q ss_pred CcCCcccccCCChHHHHHHHhHHhhhcCCCCCchh
Q 001468 1007 SEEDSEEDKGKTWEELEREASYADREKGADSDSED 1041 (1073)
Q Consensus 1007 ~~~~~~~~~g~~wdele~~a~~~d~~~~~~~~~~~ 1041 (1073)
++.+||||+|+||||||+||+++|++++.+++...
T Consensus 921 e~~~sdEE~gkdwdele~ea~~~dr~~~~~~e~~s 955 (960)
T KOG1189|consen 921 EDLESDEESGKDWDELEREARNADREHGAEEERES 955 (960)
T ss_pred ccccchhhhccchhhhHHHHhhcchhhchhhhcch
Confidence 44455789999999999999999998876554443
|
|
| >COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p | Back alignment and domain information |
|---|
| >PRK09795 aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR02993 ectoine_eutD ectoine utilization protein EutD | Back alignment and domain information |
|---|
| >COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10879 proline aminopeptidase P II; Provisional | Back alignment and domain information |
|---|
| >PRK14575 putative peptidase; Provisional | Back alignment and domain information |
|---|
| >PRK14576 putative endopeptidase; Provisional | Back alignment and domain information |
|---|
| >cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor | Back alignment and domain information |
|---|
| >PRK15173 peptidase; Provisional | Back alignment and domain information |
|---|
| >PRK13607 proline dipeptidase; Provisional | Back alignment and domain information |
|---|
| >KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK07281 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >PRK12897 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >PRK12318 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR00500 met_pdase_I methionine aminopeptidase, type I | Back alignment and domain information |
|---|
| >PRK05716 methionine aminopeptidase; Validated | Back alignment and domain information |
|---|
| >PRK12896 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >cd01090 Creatinase Creatine amidinohydrolase | Back alignment and domain information |
|---|
| >PLN03158 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >cd01087 Prolidase Prolidase | Back alignment and domain information |
|---|
| >KOG2737 consensus Putative metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >cd01092 APP-like Similar to Prolidase and Aminopeptidase P | Back alignment and domain information |
|---|
| >cd01086 MetAP1 Methionine Aminopeptidase 1 | Back alignment and domain information |
|---|
| >PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd01085 APP X-Prolyl Aminopeptidase 2 | Back alignment and domain information |
|---|
| >cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase | Back alignment and domain information |
|---|
| >cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 | Back alignment and domain information |
|---|
| >COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00053 methionine aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
| >TIGR00495 crvDNA_42K 42K curved DNA binding protein | Back alignment and domain information |
|---|
| >KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK08671 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR00501 met_pdase_II methionine aminopeptidase, type II | Back alignment and domain information |
|---|
| >cd01088 MetAP2 Methionine Aminopeptidase 2 | Back alignment and domain information |
|---|
| >PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A | Back alignment and domain information |
|---|
| >PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families | Back alignment and domain information |
|---|
| >PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin | Back alignment and domain information |
|---|
| >PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3 | Back alignment and domain information |
|---|
| >KOG2776 consensus Metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2775 consensus Metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
| >PLN03158 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >cd01086 MetAP1 Methionine Aminopeptidase 1 | Back alignment and domain information |
|---|
| >KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK05716 methionine aminopeptidase; Validated | Back alignment and domain information |
|---|
| >KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12896 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >cd01088 MetAP2 Methionine Aminopeptidase 2 | Back alignment and domain information |
|---|
| >KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
| >PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 [] | Back alignment and domain information |
|---|
| >TIGR00495 crvDNA_42K 42K curved DNA binding protein | Back alignment and domain information |
|---|
| >PRK08671 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR00501 met_pdase_II methionine aminopeptidase, type II | Back alignment and domain information |
|---|
| >PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >TIGR00500 met_pdase_I methionine aminopeptidase, type I | Back alignment and domain information |
|---|
| >KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
| >PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] | Back alignment and domain information |
|---|
| >PTZ00053 methionine aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
| >KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
| >cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 | Back alignment and domain information |
|---|
| >cd01087 Prolidase Prolidase | Back alignment and domain information |
|---|
| >cd01092 APP-like Similar to Prolidase and Aminopeptidase P | Back alignment and domain information |
|---|
| >PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] | Back alignment and domain information |
|---|
| >PRK12897 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
| >COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase | Back alignment and domain information |
|---|
| >PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46 | Back alignment and domain information |
|---|
| >PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
| >PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13104 DUF3956: Protein of unknown function (DUF3956) | Back alignment and domain information |
|---|
| >PRK12318 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box | Back alignment and domain information |
|---|
| >PRK07281 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >cd01085 APP X-Prolyl Aminopeptidase 2 | Back alignment and domain information |
|---|
| >PRK09795 aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >cd01090 Creatinase Creatine amidinohydrolase | Back alignment and domain information |
|---|
| >PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1073 | ||||
| 3cb6_A | 444 | Crystal Structure Of The S. Pombe Peptidase Homolog | 1e-73 | ||
| 3cb5_A | 444 | Crystal Structure Of The S. Pombe Peptidase Homolog | 1e-71 | ||
| 4ioy_X | 285 | Structure Of The Spt16 Middle Domain Reveals Functi | 9e-54 | ||
| 3bip_A | 467 | Crystal Structure Of Yeast Spt16 N-Terminal Domain | 3e-51 | ||
| 3bit_A | 453 | Crystal Structure Of Yeast Spt16 N-Terminal Domain | 2e-49 | ||
| 4fkc_A | 377 | Recombinant Prolidase From Thermococcus Sibiricus L | 2e-10 | ||
| 1wn1_A | 356 | Crystal Structure Of Dipeptiase From Pyrococcus Hor | 1e-07 | ||
| 2zsg_A | 359 | Crystal Structure Of X-Pro Aminopeptidase From Ther | 2e-04 |
| >pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology Domain Of Fact Complex Subunit Spt16 (Form B) Length = 444 | Back alignment and structure |
|
| >pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology Domain Of Fact Complex Subunit Spt16 (form A) Length = 444 | Back alignment and structure |
| >pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional Features Of The Histone Chaperone Fact Length = 285 | Back alignment and structure |
| >pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain Length = 467 | Back alignment and structure |
| >pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain Length = 453 | Back alignment and structure |
| >pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus Length = 377 | Back alignment and structure |
| >pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii Ot3 Length = 356 | Back alignment and structure |
| >pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga Maritima Msb8 Length = 359 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-125
Identities = 158/451 (35%), Positives = 245/451 (54%), Gaps = 23/451 (5%)
Query: 25 YAINLDNFSKRLKMLYSHW--TEHNSDLWGDSNALAVATPPVSEDLRYLKSSALNVWLVG 82
Y I+ F KRL +L + W E L+ D +++ V + Y KS+AL+ WL+G
Sbjct: 6 YEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLG 65
Query: 83 YEFPETIMVFLKKQIHFLCSQKKASLLEVIKKSAKEAVGIEVVIHVKGKTDDGSGLMDKI 142
YEFP T+++ K +I L S KA++L + ++ A + ++ K ++ L +KI
Sbjct: 66 YEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDA-EENKKLFEKI 124
Query: 143 FGAVNDQSKSGGQNSPVVGHISREAPEGKLLETWNEKLKKAN--FALSDVSNGFSDLFAI 200
+ +K VG ++ +GK + W+ + F L D S G + AI
Sbjct: 125 IEYIRATNKK-------VGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAI 177
Query: 201 KDDTELTNIKKAAFLSSSVMKQFVVPKLEKVIDEEKKVSHSSLMDETEKAILEPARIKVK 260
KD+ EL NIK A+ +S +VM ++ V +L ID+ KK++HS D+ E I A + K
Sbjct: 178 KDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTK 237
Query: 261 ------LKAENVDICYPPIFQSGGEFDLKPSASSNDNYLYYDSTSVIICAVGSRYNSYCS 314
+ + ++ CY PI QSGG +DLKPSA ++D L+ D V++C++G RY SYCS
Sbjct: 238 SLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCSLGFRYKSYCS 294
Query: 315 NVARTFLIDANTVQSKAYEVLLKAHEAAISALKSGNKVSAAYKAASTVVEKDAPELAANL 374
NV RT+L D ++ Q K Y L+ + + G + Y ++ P+L N
Sbjct: 295 NVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNF 354
Query: 375 TRNAGTGIGLEFRESGLSLNAKNDRILKAGMVFNVSLGFQNLQT-ENKNPKTQKFSVLLA 433
RN G GIG+EFRES L +NAKN R+L+AGM N+S+GF NL KN +++++++LL
Sbjct: 355 VRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLI 414
Query: 434 DTVIVGEKVPDIVTSKSSKAVKDVAYSFNED 464
DT+ + P + T S KA D++Y F ED
Sbjct: 415 DTIQITRSDPIVFT-DSPKAQGDISYFFGED 444
|
| >3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 | Back alignment and structure |
|---|
| >1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 | Back alignment and structure |
|---|
| >3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Length = 356 | Back alignment and structure |
|---|
| >1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 | Back alignment and structure |
|---|
| >2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
| >4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Length = 378 | Back alignment and structure |
|---|
| >1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Length = 351 | Back alignment and structure |
|---|
| >2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Length = 261 | Back alignment and structure |
|---|
| >1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Length = 356 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Length = 517 | Back alignment and structure |
|---|
| >3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Length = 451 | Back alignment and structure |
|---|
| >4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 | Back alignment and structure |
|---|
| >2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Length = 440 | Back alignment and structure |
|---|
| >3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 | Back alignment and structure |
|---|
| >2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Length = 494 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1073 | ||||
| d2gcla1 | 238 | b.55.1.10 (A:237-474) FACT complex subunit POB3, m | 2e-42 | |
| d1o0xa_ | 249 | d.127.1.1 (A:) Methionine aminopeptidase {Thermoto | 1e-11 | |
| d2gg2a1 | 262 | d.127.1.1 (A:3-264) Methionine aminopeptidase {Esc | 2e-08 | |
| d1pv9a2 | 221 | d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal | 3e-08 | |
| d2v3za2 | 264 | d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal | 2e-05 | |
| d1chma2 | 246 | d.127.1.1 (A:157-402) Creatinase, catalytic (C-ter | 5e-05 | |
| d1b6aa2 | 295 | d.127.1.1 (A:110-374,A:449-478) Methionine aminope | 3e-04 |
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: SSRP1-like domain: FACT complex subunit POB3, middle domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 152 bits (386), Expect = 2e-42
Identities = 32/235 (13%), Positives = 80/235 (34%), Gaps = 23/235 (9%)
Query: 695 RGRKLTGSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMV 754
RGR ++ + N R + + + I+ P ++ ++ + +
Sbjct: 18 RGRY---DIDIYKNSIRLRGKTYEY--KLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQ 72
Query: 755 GNKK--TKDVQFYI-EVMDVVQTLGGGKRSAYDPDEVEEEQRERARKNKINMDFQNFVNR 811
G +QF E +V L D+++++ + ++ + +R
Sbjct: 73 GQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAK-THIVLSHVLKGLTDR 131
Query: 812 VNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEI 871
+ G E+ + ++ P + L + I S++
Sbjct: 132 RVIVPG---------EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTL-YIPFSDV 181
Query: 872 EIVNLERVGLG---QKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLK 923
+VN+ R G + FD+ +V + R +I ++++L + +L+
Sbjct: 182 SMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSKNLR 235
|
| >d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Length = 249 | Back information, alignment and structure |
|---|
| >d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
| >d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 221 | Back information, alignment and structure |
|---|
| >d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 264 | Back information, alignment and structure |
|---|
| >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Length = 246 | Back information, alignment and structure |
|---|
| >d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Length = 295 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1073 | |||
| d2gcla1 | 238 | FACT complex subunit POB3, middle domain {Baker's | 100.0 | |
| d1pv9a2 | 221 | Aminopeptidase P, C-terminal domain {Archaeon Pyro | 100.0 | |
| d1chma2 | 246 | Creatinase, catalytic (C-terminal) domain {Pseudom | 100.0 | |
| d1o0xa_ | 249 | Methionine aminopeptidase {Thermotoga maritima [Ta | 100.0 | |
| d2v3za2 | 264 | Aminopeptidase P, C-terminal domain {Escherichia c | 100.0 | |
| d1qxya_ | 249 | Methionine aminopeptidase {Staphylococcus aureus [ | 100.0 | |
| d2gg2a1 | 262 | Methionine aminopeptidase {Escherichia coli [TaxId | 100.0 | |
| d1xgsa2 | 218 | Methionine aminopeptidase {Archaeon Pyrococcus fur | 100.0 | |
| d1b6aa2 | 295 | Methionine aminopeptidase {Human (Homo sapiens) [T | 100.0 | |
| d1chma1 | 155 | Creatinase {Pseudomonas putida [TaxId: 303]} | 99.34 | |
| d1kp0a1 | 156 | Creatinase {Actinobacillus sp. [TaxId: 41114]} | 99.24 | |
| d1pv9a1 | 117 | Aminopeptidase P {Archaeon Pyrococcus furiosus [Ta | 98.83 | |
| d2v3za1 | 176 | Aminopeptidase P {Escherichia coli [TaxId: 562]} | 98.24 | |
| d1b6aa2 | 295 | Methionine aminopeptidase {Human (Homo sapiens) [T | 96.42 | |
| d1xgsa2 | 218 | Methionine aminopeptidase {Archaeon Pyrococcus fur | 96.12 | |
| d2v3za2 | 264 | Aminopeptidase P, C-terminal domain {Escherichia c | 94.54 | |
| d1o0xa_ | 249 | Methionine aminopeptidase {Thermotoga maritima [Ta | 94.29 | |
| d1chma2 | 246 | Creatinase, catalytic (C-terminal) domain {Pseudom | 93.98 | |
| d1qxya_ | 249 | Methionine aminopeptidase {Staphylococcus aureus [ | 93.88 | |
| d2gg2a1 | 262 | Methionine aminopeptidase {Escherichia coli [TaxId | 91.05 | |
| d1pv9a2 | 221 | Aminopeptidase P, C-terminal domain {Archaeon Pyro | 90.14 | |
| d2rnrb1 | 108 | TFIIH basal transcription factor complex p62 subun | 81.76 |
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: SSRP1-like domain: FACT complex subunit POB3, middle domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=343.81 Aligned_cols=223 Identities=15% Similarity=0.282 Sum_probs=186.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCEEECCEECC-
Q ss_conf 5546100389998865446607887431111018999405543143111220358895289999983555110762035-
Q 001468 682 KLFDLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPDERVDVMYGNIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTK- 760 (1073)
Q Consensus 682 ~L~d~~~rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~~~dily~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~- 760 (1073)
.+.||..--+ -| | -+|++|.|+||+++ ++..+.|+|+||+|+|||||++++++++||||+||||+|||+|+
T Consensus 8 ~~~dv~~~~P-Rg---k--~~i~~~~~~lrl~g--~~~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~ 79 (238)
T d2gcla1 8 SFQDVFFTTP-RG---R--YDIDIYKNSIRLRG--KTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPF 79 (238)
T ss_dssp EEEEEEEEET-TE---E--EEEEECSSEEEEEE--SSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEE
T ss_pred EEECCEEECC-CC---C--EEEEEECCEEEEEC--CCCCEEEEHHHEEEEEECCCCCCCEEEEEEEECCHHHCCCCCCCE
T ss_conf 9967548768-98---3--68999668289988--850137794542278976679976499999846823159825860
Q ss_pred -EEEEEE-EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCE
Q ss_conf -026778-732147642798677999567999999999999987-98999999982102898655788401046766513
Q 001468 761 -DVQFYI-EVMDVVQTLGGGKRSAYDPDEVEEEQRERARKNKIN-MDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGF 837 (1073)
Q Consensus 761 -dvQf~~-e~~~~~~~~~~~r~~~~d~de~~~Eq~er~~~~~ln-~~f~~f~~~v~~~~~~~~~~~~~~~~~~p~~~l~f 837 (1073)
++||++ |.+++.+ + .+++++++. ++.+++..+. +.|+.|++.+..+++.... .|.+|+.|++++||
T Consensus 80 ~v~qf~~~e~~~~~l--~------~~~e~~~~~-~~~~l~~~~~~~~~~~~~~~~k~l~~~kv~--~p~~f~~~~~~~~v 148 (238)
T d2gcla1 80 LVLQFQKDEETEVQL--N------LEDEDYEEN-YKDKLKKQYDAKTHIVLSHVLKGLTDRRVI--VPGEYKSKYDQCAV 148 (238)
T ss_dssp EEEEEETTCEEEEEC--C------CCHHHHHHH-TTTTCCSEEEEEHHHHHHHHHHHHHCCCEE--CCCSCCCTTSCSCE
T ss_pred EEEEECCCCCCEEEE--C------CCHHHHHHH-HCCHHHHHHCCHHHHHHHHHHHHHHCCEEC--CCCCCCCCCCCCEE
T ss_conf 899980688737786--4------886897654-200023330560889999999987285753--87333577886128
Q ss_pred EECCCCCEEEEEECCCCCEEECCCCCEEEECCCEEEEEEEEECC---CCCCEEEEEEEECCCCCEEEEECCCCCCHHHHH
Q ss_conf 30013730332108653145203782899728354999984048---873166999973399991799322488845699
Q 001468 838 HGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGL---GQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIK 914 (1073)
Q Consensus 838 ~g~~~~~~~~l~pt~~clv~l~e~P~~vi~l~eie~v~feRv~~---~~k~FD~~~v~Kd~~~~~~~i~~I~~~~l~~ik 914 (1073)
.|++++++++|+||.+||++++ +|+++|+++||+.|+||||++ .+|||||+|++|| ++++++|++||+++++.|+
T Consensus 149 ~~~~~~~~G~L~pl~~~llf~~-KP~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~-~~~~~~fs~I~~~e~~~i~ 226 (238)
T d2gcla1 149 SCSFKANEGYLYPLDNAFFFLT-KPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLE 226 (238)
T ss_dssp EEEETTEEEEEEECSSEEEEES-SSCEEEEGGGEEEEEEEC--------CEEEEEEEEST-TCCEEEEEEEEGGGHHHHH
T ss_pred EEEECCCCEEEEECCCEEEEEC-CCCEEEEEHHEEEEEEEEECCCCCCCCEEEEEEEEEC-CCCCEEEECCCHHHHHHHH
T ss_conf 8761563079997167279803-7759999003869999963277532316669999947-9744899161889988899
Q ss_pred HHHHCCCCEEE
Q ss_conf 98410794034
Q 001468 915 EWLDTTDLKYY 925 (1073)
Q Consensus 915 ~wl~s~~i~~~ 925 (1073)
+||++++|++.
T Consensus 227 ~~l~~~~ikik 237 (238)
T d2gcla1 227 QFLKSKNLRVK 237 (238)
T ss_dssp HHHHHTTCCEE
T ss_pred HHHHHCCCCCC
T ss_conf 99997798135
|
| >d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]} | Back information, alignment and structure |
|---|
| >d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|