Citrus Sinensis ID: 001558

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050---

MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

ccccccccHHHHHHHHHHHHccccccccccccccHHHHHHcccccEEEEEEHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccc

cccccccccHHHHHHHHHHHcHHccccccccHHHHHHHHHHccccEEEEEccHHHHHHHcHHHHHHHHHHHHHHHHHccccccEEEccccHHHHHEEEEEEcccccHHHHHHHHHHccccHHHHcccccccccccEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHccccccccHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHccccHHHHHHHEEcccccccHHccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHcccHHHHHccHHHHHccccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccEEEEccccccccccc

mgalnsdsrkVETTRKILSFHredrctdpnnpqSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLssagvtelfpgsnlppnerlmvmrevnplpmslltGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAqrnpsllakvgvtpLVLEIVNYRLlplyryqgkTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDffslkregkgsteftETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQctqllspsadptyvktylshsfpqhRQYLCAGAWIlmqghpeninSANLLRVLRefspeevtsNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYcmnrgppehwlySGLFKRVELQKALGNhlswkeryptfFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNvfdlskipfsesfpqhisssnpvmcpplDYFATLLLGLVNNvipalnynsksgstmdaslraphnkspmtsqsgpsnvsegrkefyqnqdpgtyTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIqptliqtsngpygasnsvgqgsvlptspsggstdslgasrstpsvsgintssfvsrsgytcqqLSCLLIQACGLLlaqlppdfhMQLYMEASRIIKESwwladgkrslgeldsavgyalldptwaaqdntsTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMgpllprlvNAHTLFNKTLALLLNTMgdvygkntlppapveasEIADLIDFLHHVVHyegqggpvqasskprpevLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

mgalnsdsrkveTTRKILsfhredrctdpnnPQSILLDFISSCQNLRIWSLNTSTREYLnneqlqkgkqidewWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSllakvgvtplVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGkgsteftetlnrITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRaphnkspmtsqsgpsnvSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQggpvqasskprPEVLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGdrmmdymnmddrSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEllpldilllalidrdddpHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPvsasqivsslvqivvniqPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

*********************************SILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNY*******************************************GTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQT*********************************************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG**********************************************************

************TTRKIL****************ILLDFISSCQNLRIWSLNTSTREYL*****Q*GKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFP***LPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF*GQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQ*******************LNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLT*QAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQR**SLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL*****************VSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQ**NGPYGASNSVGQGSVLPTSPSGGSTD************************YTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYE****************LVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATH*K******

************TTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA*******************RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLP********************SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQG*********RPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

***********E*****LSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTS***************************SRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKM*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1053	2.2.26 [Sep-21-2011]
F4I4P3		1615	Mediator of RNA polymeras	yes	no	0.987	0.643	0.774	0.0
Q9W1X7		1439	Mediator of RNA polymeras	yes	no	0.535	0.391	0.212	7e-13
Q16HH9		1409	Mediator of RNA polymeras	N/A	no	0.528	0.394	0.207	7e-09
Q5RIW8		1376	Mediator of RNA polymeras	yes	no	0.541	0.414	0.204	3e-08
Q5EB59		1367	Mediator of RNA polymeras	yes	no	0.533	0.411	0.196	2e-07
Q9ULK4		1368	Mediator of RNA polymeras	yes	no	0.545	0.419	0.197	2e-07
Q80YQ2		1367	Mediator of RNA polymeras	yes	no	0.533	0.411	0.196	2e-07
Q60UZ5		1589	Mediator of RNA polymeras	N/A	no	0.263	0.174	0.219	3e-05
Q6P423		1369	Mediator of RNA polymeras	N/A	no	0.405	0.311	0.205	4e-05

>sp\|F4I4P3\|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1	Back alignment and function desciption

 Score = 1697 bits (4395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1052 (77%), Positives = 931/1052 (88%), Gaps = 12/1052 (1%)

Query: 1    MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN 60
            M ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLN
Sbjct: 559  MTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLN 618

Query: 61   NEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAG 120
            NEQL KGKQIDEWWR  SKG+RMMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSAG
Sbjct: 619  NEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAG 676

Query: 121  VTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAM 180
            + EL PG  L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAM
Sbjct: 677  MAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAM 733

Query: 181  VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKT 240
            VETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KT
Sbjct: 734  VETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKT 793

Query: 241  LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRIT 300
            LMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT
Sbjct: 794  LMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRIT 853

Query: 301  VIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKR 360
            ++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKR
Sbjct: 854  IMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKR 913

Query: 361  GLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPEN 420
            GL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH EN
Sbjct: 914  GLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAEN 973

Query: 421  INSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLT 480
            INS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  T
Sbjct: 974  INSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWT 1033

Query: 481  HELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKR 540
            HE+LPLDI LLALIDRDDDPHAL I ++LL   +L  R+K YC NRG PEHWL + +FKR
Sbjct: 1034 HEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKR 1093

Query: 541  VELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLA 600
             ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLA
Sbjct: 1094 NELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLA 1153

Query: 601  YYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDY 660
            Y+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDY
Sbjct: 1154 YHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDY 1213

Query: 661  FATLLLGLVNNVIPALNYNSKS-------GSTMDASLRAPHNKSPMTSQSGPSNVSEGRK 713
            FA+LLL LVNNVIP L+ +S            +++S R PH K+P TSQ GP+N SEG+K
Sbjct: 1214 FASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQK 1273

Query: 714  EFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASN 773
             FYQ QDPGTYTQLVLETAVIEILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+N
Sbjct: 1274 AFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAAN 1333

Query: 774  SVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLL 833
             VGQGSVLPTSPSGGSTDS+ ASRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLL
Sbjct: 1334 GVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLL 1393

Query: 834  AQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGN 893
            AQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGN
Sbjct: 1394 AQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGN 1453

Query: 894  IVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKT 953
            IVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKT
Sbjct: 1454 IVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKT 1513

Query: 954  LALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVL 1013
            L LLL+ + DV+GK     APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L
Sbjct: 1514 LMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILAL 1573

Query: 1014 TGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1045
             GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct: 1574 IGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9W1X7\|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1	Back alignment and function description

>sp\|Q16HH9\|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes aegypti GN=MED23 PE=3 SV=1	Back alignment and function description

>sp\|Q5RIW8\|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio GN=med23 PE=2 SV=2	Back alignment and function description

>sp\|Q5EB59\|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus GN=Med23 PE=2 SV=2	Back alignment and function description

>sp\|Q9ULK4\|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2	Back alignment and function description

>sp\|Q80YQ2\|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus GN=Med23 PE=1 SV=2	Back alignment and function description

>sp\|Q60UZ5\|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3	Back alignment and function description

>sp\|Q6P423\|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis GN=med23 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1053
255586806		1613	conserved hypothetical protein [Ricinus	0.999	0.652	0.853	0.0
356530772		1615	PREDICTED: uncharacterized protein LOC10	1.0	0.652	0.821	0.0
359472598		1663	PREDICTED: uncharacterized protein LOC10	0.996	0.630	0.822	0.0
297737648		1550	unnamed protein product [Vitis vinifera]	1.0	0.679	0.792	0.0
15220680		1615	uncharacterized protein [Arabidopsis tha	0.987	0.643	0.774	0.0
9295691		1583	F26F24.8 [Arabidopsis thaliana]	0.987	0.656	0.769	0.0
334182788		1592	uncharacterized protein [Arabidopsis tha	0.983	0.650	0.771	0.0
297845394		1637	hypothetical protein ARALYDRAFT_472581 [	0.987	0.635	0.775	0.0
115448499		1620	Os02g0732700 [Oryza sativa Japonica Grou	0.995	0.646	0.719	0.0
218191522		1565	hypothetical protein OsI_08822 [Oryza sa	0.995	0.669	0.716	0.0

>gi\|255586806\|ref\|XP_002534017.1\| conserved hypothetical protein [Ricinus communis] gi\|223525976\|gb\|EEF28365.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1803 bits (4669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 906/1061 (85%), Positives = 977/1061 (92%), Gaps = 9/1061 (0%)

Query: 1    MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN 60
            + AL +D+RKVETTRKI+SFHREDR +DPNNPQSILLDFISSCQNLRIWSLNTSTREYLN
Sbjct: 554  VNALTTDARKVETTRKIMSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN 613

Query: 61   NEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAG 120
            +EQLQKGKQIDEWWR V+KGDRM+DYMNMDDRS+GMFWVVSYTM+QPACETV+NWLSSAG
Sbjct: 614  SEQLQKGKQIDEWWRTVTKGDRMIDYMNMDDRSIGMFWVVSYTMSQPACETVVNWLSSAG 673

Query: 121  VTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAM 180
            V+EL  G+++  NERLMVMREVNPLP+SLL+G SLNLCLKL  Q+EDS+F GQV+ SIAM
Sbjct: 674  VSEL-AGTSMQSNERLMVMREVNPLPISLLSGLSLNLCLKLVFQLEDSLFAGQVIPSIAM 732

Query: 181  VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYR-----YQ 235
            VETY RL+L+APHSLFRS FSHLAQR PSLL+K GVT LV EIVNYRLLPLYR     YQ
Sbjct: 733  VETYCRLLLIAPHSLFRSHFSHLAQRYPSLLSKPGVTLLVFEIVNYRLLPLYRQEHVEYQ 792

Query: 236  GKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTET 295
            GK+K+LMYD+TKI+S LK KRGDHRV RLAENLCMNLILS RDFFS+KREGKG TEFTET
Sbjct: 793  GKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKGPTEFTET 852

Query: 296  LNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIG 355
            LNR+TVI LAIIIKTRGIADADH+LYLQTMLEQIMATSQHTWSEKTLRYFPSLL DAL G
Sbjct: 853  LNRVTVITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHTWSEKTLRYFPSLLHDALSG 912

Query: 356  RIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQ 415
            RIDKRGL IQ WQQ ETTVINQCTQLLSPSA+P YV TY++HSFPQHRQYLCAGAWILMQ
Sbjct: 913  RIDKRGLAIQEWQQTETTVINQCTQLLSPSAEPAYVMTYINHSFPQHRQYLCAGAWILMQ 972

Query: 416  GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANIS 475
            GHPENINS NL RVLREFSPEEVTSNIYTMVDVLLH I +ELQ GHSLQDLL K CAN++
Sbjct: 973  GHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHRIQMELQHGHSLQDLLLKTCANLA 1032

Query: 476  FFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYS 535
            FFV  HELLPLDILLLAL DRDDDPHALRIVI+LLDRQELQQRVKL+CMNRGPPEHWL+S
Sbjct: 1033 FFVWGHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQQRVKLFCMNRGPPEHWLFS 1092

Query: 536  GLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATY 595
            G+FKR+ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPLIVYRL+ENDA+D ADRVLA Y
Sbjct: 1093 GVFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLVENDAIDPADRVLAMY 1152

Query: 596  SSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMC 655
            S FLAY+PLRF+FVRDILAYFYGHLPGKLIVRILNV DLSKIPFSESFPQHISSSNPVMC
Sbjct: 1153 SPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVMC 1212

Query: 656  PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDA---SLRAPHNKSPMTSQSGPSNVSEGR 712
            PP +YFATLLLGLVNNV+P LN NSK GS  D    SLR P+ K+P TSQSGP+N+S+ +
Sbjct: 1213 PPPEYFATLLLGLVNNVLPPLNTNSKYGSLGDGLCNSLRNPNTKTPATSQSGPTNISDAQ 1272

Query: 713  KEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGAS 772
            K FYQ QDPGTYTQLVLETAVIE+LSLPV+ASQIVSSLVQIVVNIQPTLIQ+SNG +GAS
Sbjct: 1273 KAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQIVVNIQPTLIQSSNGLHGAS 1332

Query: 773  NSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLL 832
            N  GQGSVLPTSPSGGSTDSLGASRS PSVSGINT++FVSRSGYTCQQLSCLLIQACGLL
Sbjct: 1333 NGAGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTATFVSRSGYTCQQLSCLLIQACGLL 1392

Query: 833  LAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 892
            LAQLPPDFH+QLYMEASRIIKESWWL D KRSLGELDSAVGYALLDPTWAAQDNTSTAIG
Sbjct: 1393 LAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 1452

Query: 893  NIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNK 952
            NIVALLHSFFSNLPQEWLEGTH I+KHLRPITSVAMLRI FRIMGPLLPRL NAH+LFNK
Sbjct: 1453 NIVALLHSFFSNLPQEWLEGTHAIVKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNK 1512

Query: 953  TLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLV 1012
            TL LLLNTM DV+G+N+ P  PVEASEIADLIDFLHHV+HYEGQGGPVQA+SKPR EVL 
Sbjct: 1513 TLLLLLNTMVDVFGRNSQPSTPVEASEIADLIDFLHHVIHYEGQGGPVQANSKPRAEVLA 1572

Query: 1013 LTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS 1053
            L GRAAESLRP++QHLLSHLKPDVNSSIYAATHPK+VQNPS
Sbjct: 1573 LCGRAAESLRPDIQHLLSHLKPDVNSSIYAATHPKLVQNPS 1613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356530772\|ref\|XP_003533954.1\| PREDICTED: uncharacterized protein LOC100798789 [Glycine max]	Back alignment and taxonomy information

>gi\|359472598\|ref\|XP_002281148.2\| PREDICTED: uncharacterized protein LOC100262719 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737648\|emb\|CBI26849.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15220680\|ref\|NP_173737.1\| uncharacterized protein [Arabidopsis thaliana] gi\|395406782\|sp\|F4I4P3.1\|MED23_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 23 gi\|332192238\|gb\|AEE30359.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9295691\|gb\|AAF86997.1\|AC005292_6 F26F24.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334182788\|ref\|NP_001185071.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332192239\|gb\|AEE30360.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297845394\|ref\|XP_002890578.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] gi\|297336420\|gb\|EFH66837.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|115448499\|ref\|NP_001048029.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|46390660\|dbj\|BAD16142.1\| unknown protein [Oryza sativa Japonica Group] gi\|113537560\|dbj\|BAF09943.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|222623623\|gb\|EEE57755.1\| hypothetical protein OsJ_08276 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|218191522\|gb\|EEC73949.1\| hypothetical protein OsI_08822 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1053
TAIR\|locus:2028040		1615	AT1G23230 "AT1G23230" [Arabido	0.987	0.643	0.738	0.0
FB\|FBgn0034795		1439	MED23 "Mediator complex subuni	0.480	0.351	0.211	5.8e-12
ZFIN\|ZDB-GENE-040724-82		1387	med23 "mediator complex subuni	0.394	0.299	0.201	2.7e-07
RGD\|1307671		1367	Med23 "mediator complex subuni	0.395	0.304	0.189	7.2e-06
UNIPROTKB\|Q5EB59		1367	Med23 "Mediator of RNA polymer	0.395	0.304	0.189	7.2e-06
MGI\|MGI:1917458		1367	Med23 "mediator complex subuni	0.395	0.304	0.189	1.2e-05
DICTYBASE\|DDB_G0270434		1662	med23 "putative mediator compl	0.191	0.121	0.244	3.4e-05
UNIPROTKB\|F1N8H3		1392	MED23 "Uncharacterized protein	0.452	0.341	0.202	0.00017
UNIPROTKB\|E1BKW3		1368	MED23 "Uncharacterized protein	0.394	0.303	0.195	0.0004

TAIR\|locus:2028040 AT1G23230 "AT1G23230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4019 (1419.8 bits), Expect = 0., P = 0.
 Identities = 777/1052 (73%), Positives = 887/1052 (84%)

Query:     1 MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLN 60
             M ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLN
Sbjct:   559 MTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLN 618

Query:    61 NEQLQKGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAG 120
             NEQL KGKQIDEWWR  SKG            S+GMFWVVSYTMAQPACETV+NWLSSAG
Sbjct:   619 NEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAG 676

Query:   121 VTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAM 180
             + EL PG  L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAM
Sbjct:   677 MAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAM 733

Query:   181 VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKT 240
             VETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KT
Sbjct:   734 VETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKT 793

Query:   241 LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRIT 300
             LMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT
Sbjct:   794 LMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRIT 853

Query:   301 VIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKR 360
             ++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKR
Sbjct:   854 IMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKR 913

Query:   361 GLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPEN 420
             GL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH EN
Sbjct:   914 GLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAEN 973

Query:   421 INSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLT 480
             INS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  T
Sbjct:   974 INSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWT 1033

Query:   481 HEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKR 540
             HE                  HAL I ++LL   +L  R+K YC NRG PEHWL + +FKR
Sbjct:  1034 HEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKR 1093

Query:   541 VELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLA 600
              ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLA
Sbjct:  1094 NELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLA 1153

Query:   601 YYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDY 660
             Y+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDY
Sbjct:  1154 YHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDY 1213

Query:   661 FATLLLGLVNNVIPAL----NYNSKSGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRK 713
             FA+LLL LVNNVIP L    N +S+SGS  D   +S R PH K+P TSQ GP+N SEG+K
Sbjct:  1214 FASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQK 1273

Query:   714 EFYQNQDPGTYTQLVLETAVIEILSLPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASN 773
              FYQ QDPGTYTQLVLETAVIEILSLP                   TLIQ+ NG +GA+N
Sbjct:  1274 AFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAAN 1333

Query:   774 SVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLL 833
              VGQGSVLPTSPSGGSTDS+ ASRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLL
Sbjct:  1334 GVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLL 1393

Query:   834 AQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGN 893
             AQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGN
Sbjct:  1394 AQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGN 1453

Query:   894 IVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKT 953
             IVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKT
Sbjct:  1454 IVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKT 1513

Query:   954 LALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVL 1013
             L LLL+ + DV+GK     APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L
Sbjct:  1514 LMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILAL 1573

Query:  1014 TGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1045
              GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct:  1574 IGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

FB\|FBgn0034795 MED23 "Mediator complex subunit 23" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040724-82 med23 "mediator complex subunit 23" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1307671 Med23 "mediator complex subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5EB59 Med23 "Mediator of RNA polymerase II transcription subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1917458 Med23 "mediator complex subunit 23" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0270434 med23 "putative mediator complex subunit 23" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8H3 MED23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BKW3 MED23 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I4P3	MED23_ARATH	No assigned EC number	0.7747	0.9876	0.6439	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1053
pfam11573		1341	pfam11573, Med23, Mediator complex subunit 23	6e-24

>gnl\|CDD\|221138 pfam11573, Med23, Mediator complex subunit 23	Back alignment and domain information

 Score =  108 bits (272), Expect = 6e-24
 Identities = 138/744 (18%), Positives = 247/744 (33%), Gaps = 127/744 (17%)

Query: 87   MNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 144
            +N D  +     ++   Y+         M  L           S    +     +    P
Sbjct: 478  LNFDMGNDYRLALLCNAYSTNTEYFSRPMPALIETLNGNSKNSSPFGLSYSRQAVNPFVP 537

Query: 145  LPMSLLTGFS-----------LNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLA-- 191
              + +L   +           L   +K A          +     A+VETY+RL++    
Sbjct: 538  FSVEVLDSLTVHSKMSLIHSILTHLIKQAQSKLPVPAVFETAP--ALVETYSRLLVYTEI 595

Query: 192  PHSLFRSLFSHLAQRNPSLLA----KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYD 244
                 R L   L               G    +LE+++YRL      YR Q     L + 
Sbjct: 596  ESLGIRGLLGQLLPLRSLNEVFKSQAWGQLHTLLEMLSYRLHHVHSHYRVQ----LLSHL 651

Query: 245  ITKIISALKVKRGDHRVLRLAENLCMNLILS----------QRDFFSLKREGKGSTEFTE 294
             +    A      + ++    E+  + LI             R     K+     +  +E
Sbjct: 652  HS---LASVNTTNNMQLHSCVESTALRLIQGLGSSEVQNQFSRYLRHCKQPKTIVSPESE 708

Query: 295  TLNRITVIALAIIIKTRGIADADHVLYLQT----MLEQIMATSQHTWSEKTLRYFPSLLR 350
             LN+  ++ LA  +K   I    +    QT     L  IM  + H W E TL  FP  L 
Sbjct: 709  ELNKALILTLARAMK---ITGTGNDPQSQTWCKDFLANIMQNTPHGWPEHTLSCFPPWLN 765

Query: 351  DALIGRIDKRGLTIQAWQQAET-TVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAG 409
            +       K+    +   QA   +V  +  +  S + +   +  +     P    +LC  
Sbjct: 766  EYF-----KQHNVPKEPNQALKKSVEEEYRRWNSMTNENDIIIRFGDPGTPP--LFLCLL 818

Query: 410  AWILMQGHPENIN-SANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 468
              +LM    E  N S    ++L    P+ +  ++    D ++  +             + 
Sbjct: 819  FKMLMWNQHETDNISPVFYKILERIGPKALVVHLRKFCDYIVAEVSNSQDGNQ-----VN 873

Query: 469  KACANISFFVLTHELLPLDILLLALIDRD-DDPHALR----IVITLLDRQELQQRVKLYC 523
            K    I+  +    ++ +D L+L LI R  +   A        + LL   E + RV+ + 
Sbjct: 874  KCIDTINDMIWKFNIITIDRLVLCLILRPHEGNDAQICFQIAQLLLLKTNEFRNRVQEFV 933

Query: 524  MNRGPPEHWLYSGLFKRV--------------ELQKALGNHLSWKERY-PTFFDDIAARL 568
             N  PPEHW  S   K                E              + P +F ++  R 
Sbjct: 934  KNN-PPEHWKQSNYHKAHLKYHQKFPEKFAFEESASHPSQPDEPSNVHLPVYFGNVCLRF 992

Query: 569  LPVIPLIVYRLIENDAMD---SADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG--- 622
            LPV+ + ++R +E        + D +L   S    ++    +F+ + L Y+   L G   
Sbjct: 993  LPVLDIYIHRYLEQQGYKLSKTLDTILDHLSMLYKFHDRPITFLYNTLHYYERLLRGRDK 1052

Query: 623  -KLIVRILNVFDLSKIPFS------ESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPA 675
              L+  I+      +            +    SS      P L Y+  L+  +V      
Sbjct: 1053 KSLVSAIIGSLKDVRPANWALTEAYLKYNMQKSSDEVNW-PELSYYMELIGRMV------ 1105

Query: 676  LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 735
                     T+D     P           P   ++ R  F +  +P  +    L    IE
Sbjct: 1106 --------DTIDGINPPP-----------PFVATDWR--FNEFPNPPAHA---LYVTCIE 1141

Query: 736  ILSLPVSASQIVSSLVQIVVNIQP 759
            +++LPVS  ++ ++L+ ++V   P
Sbjct: 1142 LMALPVSPEKVANALIDVIVKGYP 1165

Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice. Length = 1341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1053
PF11573		1341	Med23: Mediator complex subunit 23; InterPro: IPR0	100.0
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0

>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity	Back alignment and domain information

Probab=100.00  E-value=6.9e-207  Score=1863.50  Aligned_cols=876  Identities=30%  Similarity=0.435  Sum_probs=777.6

Q ss_pred             CCCCCccchhhhhhhhhhhhcccccCCCCCCcchhhhhhhccccceeEeecccchHHhhcHHHHhhh-hhHHHHHHhhhc
Q 001558            1 MGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKG-KQIDEWWRQVSK   79 (1053)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-k~~~ew~~~~~~   79 (1053)
                      +++|++|.++|.+..++|.+++|+..+...||++.+.+|+.+|+.+++ +-+...+++.+++++.++ |+|+|||++..+
T Consensus       395 ~n~lsd~~~~v~~L~~~Ly~e~e~l~~pd~~~~~~v~~~aaaCiWi~L-~kk~~~~~~~~~~~i~~~lk~~~e~l~~~~~  473 (1341)
T PF11573_consen  395 KNPLSDDFQPVLDLYNLLYPEKEPLPVPDDNPPSCVRFFAAACIWIHL-SKKAQSKNYEINRQIPEHLKQIHEFLQHLTS  473 (1341)
T ss_pred             cccchhhHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHHHH-HhhccccccccccCCcHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999977776 666666777789999998 999999999986


Q ss_pred             cCccccccccCCccchhhhhhH--hhhcCcccchhhhhhccccccccccCCCCCCCccccccccccccchhhhhhhhhHh
Q 001558           80 GDRMMDYMNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNL  157 (1053)
Q Consensus        80 g~~~~~~~n~D~~~~~m~~vls--~~~~~p~~d~~m~~~~~~~~~e~i~~~~~~p~~~~~a~~~~~Plsm~lLd~Lt~h~  157 (1053)
                      |.+   ++|||++++||+|||+  |++.||.|+++|+|+..+++++.-+++...++.+++|+++++||||++||+||+|+
T Consensus       474 ~~~---~~n~d~~~~~~lavl~NaYs~~~~~~~~vm~~l~~~i~g~~~~~~~~~~~~~~~a~~~~~Plpm~lLd~LT~h~  550 (1341)
T PF11573_consen  474 PNN---IMNLDMRSDYMLAVLCNAYSTDQPYFDRVMNWLVEAIDGEPDPSQPFELSYGRMAFNKTSPLPMSLLDSLTVHS  550 (1341)
T ss_pred             Ccc---ccccccccchhhhhhhhhhccCcHHHHHHHHHHHHHhccCCCCCCCCCCCccccccCCCCCCCHHHHHHHhHHH
Confidence            555   8999999999999998  58899999999999999999996666555789999999999999999999999999


Q ss_pred             hHHHHHHHHHhhh----ccCccC-----ChhHHHHHHHhhhccch-hhhHhhhhhhhccCh-----hhhh--hcchhhHH
Q 001558          158 CLKLALQMEDSIF----GGQVVA-----SIAMVETYTRLMLLAPH-SLFRSLFSHLAQRNP-----SLLA--KVGVTPLV  220 (1053)
Q Consensus       158 k~~Li~qi~~~~f----~~~~vP-----SPAlvETYsRLL~~te~-sL~~k~f~~lsQ~~p-----sv~k--a~g~l~~L  220 (1053)
                      ||+|++||+++++    +|+.+|     |||+||||+|+|+|+|+ +||.|+|  .+|..|     .++|  +||++|+|
T Consensus       551 k~sL~~~i~~~l~~~a~~k~~~P~~~~~s~alvETY~rlL~~~eiesL~~r~l--~s~~~~~~~~~~~~k~~a~~~l~~L  628 (1341)
T PF11573_consen  551 KMSLIHSIVTHLFKFAQSKQPVPAVFETSPALVETYSRLLVYKEIESLGIRSL--ASQLVPDRSPNTVQKSQAWGQLHTL  628 (1341)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhHh--HHhhcccccccccccccchHHHHHH
Confidence            9999999999887    479999     99999999999999999 6899999  667766     7787  99999999


Q ss_pred             HHHHhhcccccccccCcchhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhc---------cccc-ccCCCCcc
Q 001558          221 LEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSL-KREGKGST  290 (1053)
Q Consensus       221 LEilsYRL~p~yR~qlls~~ll~~l~~i~~~~~n~~q~h~l~r~~E~~~LrlI~sl~s---------~~~~-~ke~~~ps  290 (1053)
                      |||+||||++++++ .+.+.|+|+.+.+   ..+++||||++||+||+|||+|++||+         |+.. +.++..++
T Consensus       629 lEilsYRL~~l~~~-~k~~~L~~l~~~~---~~~~~~n~qL~~~~E~~~Lrli~~Lgs~~~~~~~~~~~~~~k~Pk~~~~  704 (1341)
T PF11573_consen  629 LEILSYRLHHLQPY-YKVQLLSHLHTLI---SVNQPNNHQLYRLLENTCLRLITGLGSSEKQPQLSRFFNECKNPKTFTS  704 (1341)
T ss_pred             HHHHHhcccccCcc-chHHHHHHHHHHh---ccCccccHHHHHHHHHHHHHHHHHcCccccchHHHHHHHhccCcccccc
Confidence            99999999543333 4444455555444   458889999999999999999999987         2333 22344568


Q ss_pred             chhHhHHHHHHHHHHHHHHhcccccc-hhhhhHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhccCCCCCcchhhHHH
Q 001558          291 EFTETLNRITVIALAIIIKTRGIADA-DHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQ  369 (1053)
Q Consensus       291 ~~sEeLNR~lIltlAr~iK~tGi~d~-~~~~~~~~~L~~im~~tph~Ws~kTL~~FP~~L~~~~~~~~d~~~~~~~~~qq  369 (1053)
                      ++||||||++|+||||+|||||+++. .++.||+++|++||+++||+||+||++|||++|+++|+++.+++    ++|||
T Consensus       705 ~~seELNR~lIltLARsikitg~~~~~~~~~~~~e~L~~i~~~t~h~Wp~~Tl~~FP~~l~~~~~~~~~~~----~~~~~  780 (1341)
T PF11573_consen  705 QESEELNRILILTLARSIKITGIGADSQSQEWCKEFLEQIMANTPHGWPEKTLRCFPDFLREFFEQNNDTR----EPKQQ  780 (1341)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHhCCCCCchHHHHhCCHHHHHHHHhCCCCC----cccHH
Confidence            89999999999999999999987654 46799999999999999999999999999999999999984433    79999


Q ss_pred             HHHHHHHHHhhccCCCCChhhHHhhhhcccCCCCchhHHHHHHHHhCC--CCCCCchHHHHHHhhCChHHHHHhhhhhhh
Q 001558          370 AETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGH--PENINSANLLRVLREFSPEEVTSNIYTMVD  447 (1053)
Q Consensus       370 l~~tV~~e~~~~~s~s~e~~~v~~~i~hf~p~~~~fLC~l~~~l~e~~--~~~I~~~~~yrvLe~isp~~lt~~i~~fvD  447 (1053)
                      ++++|++||++|.++++|+++|+.|++|  ++|++|||++|||+|+++  +++|+|.+ |+|||+||||++++|+|+|||
T Consensus       781 ~~~~ve~e~~~~~~~~~e~~~v~~f~~~--~~~~~fLC~i~~~l~~~~~~~~~i~~~~-y~vLe~i~p~~l~~~i~~fvD  857 (1341)
T PF11573_consen  781 QKKQVEEEYRQWLSMSNENQIVMHFSDH--NTHPLFLCVIWKMLMENQDETENISSVF-YKVLERISPRELTAHIRTFVD  857 (1341)
T ss_pred             HHHhHHHHHHHHHccCChHHHHHHhccC--CCCceeHHHHHHHHHhhhcccccccHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999444444444  579999999999999544  56899987 999999999999999999999


Q ss_pred             hhhhhhhccccCCCcchHHHHHHHHHHhhhhhhccceehhhhhhhhccCCCCCc-----hhhhhhhcCCcHHHHHHHHHH
Q 001558          448 VLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLY  522 (1053)
Q Consensus       448 ~Lv~e~~~~~~~~~~~q~l~~k~v~~L~~mIWky~IiplDrlLLaL~lR~~e~~-----~liIqllLL~~~EfqnRV~~F  522 (1053)
                      |||+|+++   . +++++ ++||+++||+|||||||||+|||+|||++||+||+     ++|||++|++++||||||++|
T Consensus       858 ylv~e~~~---~-~~~~~-~~k~v~~L~~~iw~~~ivplDrllL~L~~r~~~d~~a~i~~~Ii~~lll~~~ef~~Rv~~F  932 (1341)
T PF11573_consen  858 YLVYEFKV---S-QDGQQ-LFKCVDTLNDMIWKYNIVPLDRLLLALALRPHDDNDAQICFQIIQLLLLKSPEFQNRVQWF  932 (1341)
T ss_pred             HHHHHHhc---C-CcHHH-HHHHHHHHHHHHHHhceeeHHHHHHHHhccCCCchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999985   2 33456 78999999999999999999999999999998776     467999999999999999999


Q ss_pred             HhcCCCCCcccccch------hhhHhhHHH----HccC-----CCCCCCCCcchhhHHhhhcCchHHHHHHHHhcCc---
Q 001558          523 CMNRGPPEHWLYSGL------FKRVELQKA----LGNH-----LSWKERYPTFFDDIAARLLPVIPLIVYRLIENDA---  584 (1053)
Q Consensus       523 ~~~~~spehW~~~~~------~~r~fpE~~----l~~~-----~s~~~~lPvYFgNvclR~LPViDivI~R~LE~~~---  584 (1053)
                      |++ ++||||++++|      ||++|||++    ++++     .+++++|||||||+|+|||||+||+|||+||+++   
T Consensus       933 ~~~-~~~ehw~~~~~~~k~~~yh~kfPE~f~~e~~~~~~~~~~~~~~~~lPvYfgn~~lR~LPVlDivi~R~lE~~~~~~ 1011 (1341)
T PF11573_consen  933 VKI-NPPEHWTQSDWFKKHLEYHSKFPEKFYFEALGSHTSSEESSQNPHLPVYFGNVCLRLLPVLDIVIHRFLELPAPPL 1011 (1341)
T ss_pred             Hhh-CCHhhcccchHHHHHHHHHHhCCcccCchhhccccCcccCCCCCCCCchhccHHHHHhhhHHHHHHHHHHhcchhh
Confidence            999 99999999999      568899955    4544     3478899999999999999999999999999994   


Q ss_pred             hhhHHHHHHhhccccccCCcchhHHHHHHHhhhcCCchH----HHHHHHhhccCCCC---CCCchhhhhhcCCCC--CCC
Q 001558          585 MDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGK----LIVRILNVFDLSKI---PFSESFPQHISSSNP--VMC  655 (1053)
Q Consensus       585 ~k~le~LL~~~~~LYrYHd~PvTfvy~tL~Yy~~~Lp~k----LV~~Ilg~ld~~r~---~lSesf~~yl~~~~~--~~~  655 (1053)
                      .|+||++|++||+||||||+|+||||+|||||||+|+++    ||.+|+|+++++|+   +|||+|.+|+++++.  +|+
T Consensus      1012 ~~~le~lL~~~~~LyryH~~P~tf~y~tL~yy~~~l~~~~kk~Lv~~i~g~l~~~~~~~~~lSe~f~~~~~~~~~~~~~~ 1091 (1341)
T PF11573_consen 1012 SKSLETLLDHYGPLYRYHDRPVTFLYSTLHYYEGKLRGRPKKKLVSAILGSLDESRPPGWPLSESFQQYLHQKSSPEVWV 1091 (1341)
T ss_pred             HHHHHHHHHHhhHHHHcCCcchHHHHHHHHHHhhccCCchHHHHHHHHHhhcccccCCCcccCHHHHHHhcccCCCCCCC
Confidence            788999999999999999999999999999999999995    99999999999996   599999999997763  699


Q ss_pred             CChHHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhHhHhhhhhh
Q 001558          656 PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE  735 (1053)
Q Consensus       656 P~~~Yf~~Li~rLv~~vlp~~~~~~~~~~~~d~s~~~~~~~fp~~s~~~~~~~~~~dwrF~E~~nP~~~al~~L~tacIE  735 (1053)
                      ||++||++||+|||+++              |++.             +|+.|+.+||||+|||||++||+   +++|||
T Consensus      1092 P~~~Y~~~Li~rL~~~~--------------~~~~-------------~~~~f~~~dwrf~Ef~np~a~aL---~~~ciE 1141 (1341)
T PF11573_consen 1092 PDLDYYMELIDRLVDTI--------------DGIN-------------PPPPFVATDWRFNEFPNPAAHAL---YVTCIE 1141 (1341)
T ss_pred             CcHHHHHHHHHHHHHhc--------------cccC-------------CCCCCCCCCcchhcCCCHHHHHH---HHHHHH
Confidence            99999999999999555              5543             23467779999999999999965   588999


Q ss_pred             hhcCCCCHHHHHHHHHHHhhhcCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccccccccccc
Q 001558          736 ILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSG  815 (1053)
Q Consensus       736 LLsLP~~p~~vv~aLvdvv~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ps~~~~~~~~~~~~~~~~~~in~s~~~~~~~  815 (1053)
                      |||||++|++||+||||||+++++.+                    |.+               .         +.    
T Consensus      1142 lmalP~~p~~v~~aLidvv~~~~~~~--------------------P~~---------------~---------i~---- 1173 (1341)
T PF11573_consen 1142 LMALPVSPEDVANALIDVVVKGYSVI--------------------PRE---------------Q---------IH---- 1173 (1341)
T ss_pred             HHcCCCCHHHHHHHHHHHHhcCCCCC--------------------CHH---------------H---------HH----
Confidence            99999999999999999999988666                    552               1         11    


Q ss_pred             ccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhcccccccCCCCCccccccccccccCCccccccccCC---chhH
Q 001558          816 YTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS---TAIG  892 (1053)
Q Consensus       816 ~~~~~~s~l~InAigLlLaaLP~~f~~~ly~e~~~vi~~~~~~~d~~~~~~~~ds~~~y~l~d~t~~~~~~t~---~~~~  892 (1053)
                              .||||+|||||+||++||+++|+++++++++..+.. .++      ...||+.+||+...+...+   +.+.
T Consensus      1174 --------~~iNaigLiltaLP~~Y~~~l~~~ii~~l~s~~~~~-~~~------~~~pf~~~~F~~~~~~~l~~~~~~~~ 1238 (1341)
T PF11573_consen 1174 --------SWINAIGLILTALPESYWNVLHDRIIEVLTSPEMTN-LTY------RCSPFELFNFDNYEESMLEKMTNPYS 1238 (1341)
T ss_pred             --------HHHHHHHHHHHhCcHHHHHHHHHHHHHHhCCccccc-ccc------CCChhHhhccchHHHHHHHhhhhhHH
Confidence                    299999999999999999999999999999987443 221      2478999999999998888   9999


Q ss_pred             HHHHHHHHHHhcCChhhhhhHHHHH-hhcCC-cchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCC
Q 001558          893 NIVALLHSFFSNLPQEWLEGTHVII-KHLRP-ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTL  970 (1053)
Q Consensus       893 ~ilAl~Ha~~~h~~~~~L~~~~~~i-~~lrP-v~Te~QL~~~~~lvgP~L~Rf~~~r~~~~~~l~~ll~~l~~vvdK~~q  970 (1053)
                      +++|++|||||||++|+|+++++++ ++++| |+||+||+|+|||||||||||+.||++|+.++++++|.|++.|||+. 
T Consensus      1239 ~~lal~ha~w~H~~i~qL~~lp~~~~e~l~p~VkTE~Qlly~chLV~PfL~Rf~~er~~~~~~i~i~ly~~l~~vd~~~- 1317 (1341)
T PF11573_consen 1239 YILALAHAYWHHCNIGQLTSLPQFLKEKLKPHVKTEEQLLYLCHLVGPFLQRFMRERTRCLMDITIELYELLKQVDKAQ- 1317 (1341)
T ss_pred             HHHHHHHHHHHhcCHHHHHHhHHHHHHhhcchhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc-
Confidence            9999999999999999999999997 99999 89999999999999999999999999999999999999999999953 


Q ss_pred             CCCCccchhhhhhhhhhhee-eEeec
Q 001558          971 PPAPVEASEIADLIDFLHHV-VHYEG  995 (1053)
Q Consensus       971 ~~~~vel~~id~IcDFlyHi-ym~~G  995 (1053)
                        ++++++|+|+|||||||| |||+|
T Consensus      1318 --~~~~l~~~d~ICDllYhiKYmfvG 1341 (1341)
T PF11573_consen 1318 --EGVELKYEDPICDLLYHIKYMFVG 1341 (1341)
T ss_pred             --cCccceehhhHHHHhhhheeeecC
Confidence              356999999999999999 99999

Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1053
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.0 bits (191), Expect = 1e-14
 Identities = 96/636 (15%), Positives = 186/636 (29%), Gaps = 189/636 (29%)

Query: 244 DITK-IISA------LKVKRGDHRVLRLAENLC----------MNLILSQR-DFF--SLK 283
           D+ K I+S       +  K      LRL   L           +  +L     F    +K
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 284 REGKG----STEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI---------- 329
            E +     +  + E  +R+       +     ++     L L+  L ++          
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 330 MATSQHTW-------SEKTLRYFPSLLRDAL----IGRIDKRGLTIQAWQQAETTVINQC 378
           +  S  TW       S K            +    +   +     ++  Q+    +    
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 379 TQLLSPSADPTY----VKTYLSHSFPQHRQY----LCAGAWILMQGHPENINSANLL--- 427
           T     S++       ++  L     + + Y    L     +L      N+ +A      
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLL-----VL-----LNVQNAKAWNAF 262

Query: 428 ----RVLREFSPEEVTSNIYTMVDVL---------LHHIHVELQRGHSLQDLLFKACANI 474
               ++L       +T+    + D L         L H  + L         L     + 
Sbjct: 263 NLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC 313

Query: 475 SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 534
               L  E+L  +   L++I                                   ++W +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATW------------------------DNWKH 349

Query: 535 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPV---IPLIV-----YRLIENDAMD 586
               K   + ++  N L   E Y   FD ++  + P    IP I+     + +I++D M 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE-YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 587 SADRVLATYS--------SFLAYYPLRFSFVRDILAYFYGHLPGKLIV---RILNVF--- 632
             ++ L  YS        S ++   +       +   +  H   + IV    I   F   
Sbjct: 407 VVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 633 DLSKIPFSESFPQHIS--SSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL 690
           DL      + F  HI     N      +  F  +           L++       ++  +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------LDFR-----FLEQKI 507

Query: 691 RAPHNKSPMTSQSGPSNVSEGRKEFYQN----QDPGTYTQLVLETAVIEILS-LPVSASQ 745
           R  H+ +   +     N    + +FY+      DP  Y +L     V  IL  LP     
Sbjct: 508 R--HDSTAWNASGSILNTL-QQLKFYKPYICDNDP-KYERL-----VNAILDFLPKIEEN 558

Query: 746 IVSS----LVQIVVNIQPTLIQTSNGPYGASNSVGQ 777
           ++ S    L++I       L+      +  ++   Q
Sbjct: 559 LICSKYTDLLRI------ALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00