Citrus Sinensis ID: 001600

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105
Protein Sequence
MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEccccccccccHccHHHHHHHHHHHcccccccHHHHHHHcccccccccccccHcccccccccccHHHHHccccHHccccccEEccccccccccccccccccccccccEEEEccccccccccccEEEEEEEEEEEEEEEEEEEEccccccccccccccccEEEEcccEEEccccccccccccccccccccHHHHHcHHHHHHccccccEEEccccccccccHHHHHHHHccccccHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAEsaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Flexible Loop (DISEMBL)
MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRaesaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldltLVSLLKREEAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdrEWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECelvqsdnskknkeliayrtrskqkk
Low Complexity Region (SEG)
MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVqrqkleeqrqllHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Disordered region (IsUnstruct)
**********************************************************ECIASL*******************************************************************************************************************************************************************LTLVSLL****************************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**********************************************************************************************************************LKIAVDYM*****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFIN*****************IV*************TDDVVLPYISEIDGMV*****************************************************
Disordered Region (DISOPRED)
*GLLILE********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Disordered Region (DISPRO)
*GLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLA**********************************LARFSWIKRFADLVFKH*******************DASLT*NSRKRQPVRYSFGEPKVILEVPSENEV*KR**D***ENNQN********VS**************************************************************************LHTLTSN*HTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTEC**********************K*NK*****R*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLLILExxxxxxxxxxxxxxxxxxxxxQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1047	2.2.26 [Sep-21-2011]
Q9FLH0	1042	Putative nuclear matrix c	yes	no	0.837	0.841	0.503	0.0

>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/980 (50%), Positives = 672/980 (68%), Gaps = 103/980 (10%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ KEC
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139

Query: 61  IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
           I+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQAEANRY
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199

Query: 121 HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
           HR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHERLLDA
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259

Query: 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREE-- 238
           Q  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    KREE  
Sbjct: 260 QVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVC 319

Query: 239 -------------------------AVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273
                                    AV ERE+SL KKEQ+LLV++E +ASKES  IQ ++
Sbjct: 320 FYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVL 379

Query: 274 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQ 333
           AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQ
Sbjct: 380 ANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQ 439

Query: 334 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 393
           SRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL
Sbjct: 440 SRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSL 499

Query: 394 DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 453
           ++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFE
Sbjct: 500 EDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFE 559

Query: 454 AEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 513
           AEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNRER
Sbjct: 560 AEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNRER 619

Query: 514 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEE 573
           EEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+
Sbjct: 620 EEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQ 679

Query: 574 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 633
           EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL V
Sbjct: 680 EKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKV 739

Query: 634 QRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKR 693
           QR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA  
Sbjct: 740 QREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA-- 797

Query: 694 HLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRF 746
            L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FSWIKR 
Sbjct: 798 -LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRC 849

Query: 747 ADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVV 806
            +L+FK S E S                           + + + E      VPSE    
Sbjct: 850 TNLIFKTSPEKST--------------------------LMHHYEEEGG---VPSEK--- 877

Query: 807 KRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFP 866
              + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK   D  
Sbjct: 878 ---LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVT 930

Query: 867 RNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVD 926
           +  S+EA     ++   N+PED+H L S +++  P G+                  +++ 
Sbjct: 931 QKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------------VVIS 971

Query: 927 KIIKISEVTCEMTDADNFIN 946
           + +KI+ VTCE T+  N + 
Sbjct: 972 ETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,579,067
Number of Sequences: 539616
Number of extensions: 14933361
Number of successful extensions: 140754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 5435
Number of HSP's that attempted gapping in prelim test: 79369
Number of HSP's gapped (non-prelim): 28672
length of query: 1047
length of database: 191,569,459
effective HSP length: 128
effective length of query: 919
effective length of database: 122,498,611
effective search space: 112576223509
effective search space used: 112576223509
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1047
359497042	1117	PREDICTED: putative nuclear matrix const	0.971	0.910	0.560	0.0
255579507	1052	Filamin-A-interacting protein, putative	0.928	0.923	0.563	0.0
449451333	1025	PREDICTED: putative nuclear matrix const	0.858	0.877	0.543	0.0
356511984	1048	PREDICTED: putative nuclear matrix const	0.914	0.913	0.524	0.0
356563480	1050	PREDICTED: putative nuclear matrix const	0.915	0.913	0.513	0.0
240256486	1010	branched-chain-amino-acid aminotransfera	0.837	0.868	0.517	0.0
238481650	1042	protein little nuclei4 [Arabidopsis thal	0.837	0.841	0.503	0.0
334188655	1018	branched-chain-amino-acid aminotransfera	0.829	0.853	0.511	0.0
7486519	1421	hypothetical protein F6H11.110 - Arabido	0.828	0.610	0.505	0.0
284807022	925	nuclear matrix constituent protein 2 [Ap	0.712	0.806	0.545	0.0

>gi|359497042|ref|XP_003635406.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi|296085718|emb|CBI29518.3| unnamed protein product [Vitis vinifera]

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1077 (56%), Positives = 770/1077 (71%), Gaps = 60/1077 (5%)

Query: 1    MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
            MGLLILE+KE A+KYEQIK  AE+AE++ K D+++H SA+AEARKRE+SLKK L +EKEC
Sbjct: 69   MGLLILERKEWATKYEQIKTEAESAEIVYKRDQSAHSSALAEARKREDSLKKALEIEKEC 128

Query: 61   IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
            IA+LEKA+HE+R E AETKVAA+ K AEA  MVE+AQK+F EAEAKLHAAE+ QAEA  +
Sbjct: 129  IANLEKALHEMRQECAETKVAAEIKLAEAHSMVEDAQKRFVEAEAKLHAAEAFQAEAICF 188

Query: 121  HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
             R+AERKLQEV AREDDL RR+ SFK+DC+EKE+EII ERQSLS+R+K +QQ  ERL+D 
Sbjct: 189  RRTAERKLQEVEAREDDLRRRLISFKSDCDEKEKEIILERQSLSERQKNVQQGQERLIDG 248

Query: 181  QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
            Q LLN+RE++I S+ QEL+R EKELEAS++N+E++ +ALNEEKSNL+L L SL  REE V
Sbjct: 249  QALLNQREEYIFSRSQELNRLEKELEASKSNIEKELRALNEEKSNLELKLASLTTREEDV 308

Query: 241  IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
            ++REA L KKE ++L+ QE +ASKES+E+QK++A HE AL+ +++EFEAEL  K KL ED
Sbjct: 309  VKREALLNKKEHEILILQEKIASKESDEVQKLMALHEIALKTRKAEFEAELETKRKLVED 368

Query: 301  EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
            EIE KRRA ELR++DL  RE+  LEREH+LEVQSRAL +KEKD+ E+ + L+EKE  L A
Sbjct: 369  EIEAKRRASELREVDLSNREDFALEREHELEVQSRALAEKEKDVTEKLNSLDEKEKYLNA 428

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
             EK+ +L+K  L+KEKEE+N +K +++KSLSSL++KKKQV+ AK+K+EAMKSE  EL VL
Sbjct: 429  AEKDVELEKIHLEKEKEEINKMKLNIEKSLSSLEDKKKQVDHAKEKVEAMKSETSELLVL 488

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
            E+KLKEE+DV+RAQKLELM E D+L+ +KA FEAEWE IDEKREELR EAER+A ER+ +
Sbjct: 489  EMKLKEEIDVIRAQKLELMAEADELRAQKANFEAEWESIDEKREELRNEAERIAEERLAI 548

Query: 481  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
            SK LKDERDSL+ E+DAMRDQ+K++V+SL+RERE+FM+KMVHE SEWF+KIQQERADFLL
Sbjct: 549  SKFLKDERDSLKLEKDAMRDQYKQEVESLSREREDFMSKMVHERSEWFSKIQQERADFLL 608

Query: 541  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
             IEMQK++LENCI+ RREELES F+EREK FE+EKM+E Q ISS+KE+  KELE V  E+
Sbjct: 609  DIEMQKKELENCIDNRREELESYFKEREKTFEQEKMKELQHISSMKERVAKELEHVASEM 668

Query: 601  KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
            KRLD ERMEIN+D +RRDREWAEL+NSIEEL +QRQKL++QR+LLHADR+EI  + E LK
Sbjct: 669  KRLDAERMEINLDHERRDREWAELSNSIEELKMQRQKLKKQRELLHADRKEIHTQIEHLK 728

Query: 661  KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDR 720
            KLEDLKIA D +A++EMQ+S  E SQ+K+  KR+   Q ++ +AD  S QK +V  NG  
Sbjct: 729  KLEDLKIASDNIALAEMQQSNQEPSQRKVYVKRYYKAQNTIPNADFESHQKINVVKNGSG 788

Query: 721  FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINS 780
            FN P++    S+SP +   FSW KR A+L+FK S E       EKS  S+ E+A+LT+  
Sbjct: 789  FNLPAL--PDSSSPSTATPFSWFKRCAELIFKLSPEKPSIKHGEKSSISNSENANLTLAG 846

Query: 781  R----------------------KRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQ 818
                                    RQP RY+ GEPKVILEVPS  E VK    LESE  +
Sbjct: 847  NLDLSDGFDREVHDRNEKTHSISDRQPTRYALGEPKVILEVPSSGEDVKGLHTLESEIKK 906

Query: 819  NAAQKCKQSVSEDGIHAARKRRV----DVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAI 874
            + ++    S SE  + A RKRRV      D VD +    Q NK+R+QQE         A 
Sbjct: 907  DTSENSSHSFSEKELLAGRKRRVVNSSSNDWVDTTLEQRQKNKKRRQQES--------AA 958

Query: 875  NHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEV 934
            +   V+ Q               S+  EG     S N TQGG EE ++LI D+IIKISEV
Sbjct: 959  DPCGVSIQ---------------SDAREGQDVSISLNQTQGGAEETNLLITDEIIKISEV 1003

Query: 935  TCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMV 994
            TCE      F NQ K +  QNSV E  QDI + GGTN  +     + V+       + + 
Sbjct: 1004 TCENV---VFDNQAKPNALQNSVVELGQDI-QHGGTNGLADSNAENCVLSSDFKAQEKIG 1059

Query: 995  QEKQMGNVKDLTECGQAQNEMGEHKLECEL-----VQSDNSKKNKELIAYRTRSKQK 1046
            +E    +V  + E  Q Q+E    K + EL      +SD+ KK  E +  R RS+QK
Sbjct: 1060 KEVLFVDVGQVIEHSQPQDESISEKSQQELQEQGVPKSDDDKKLSEKVGRRMRSRQK 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579507|ref|XP_002530596.1| Filamin-A-interacting protein, putative [Ricinus communis] gi|223529844|gb|EEF31776.1| Filamin-A-interacting protein, putative [Ricinus communis]

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/1045 (56%), Positives = 744/1045 (71%), Gaps = 73/1045 (6%)

Query: 1    MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
            MGLLILE+KELAS  EQIK SAE  EL  K D+A+HLSA+AEARKREESLKK LGVEKEC
Sbjct: 71   MGLLILERKELASNCEQIKTSAETTELKHKRDQAAHLSALAEARKREESLKKALGVEKEC 130

Query: 61   IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
            IAS+EKA+HE+RAESAE KVAAD K AEA  MVE+AQKK+ +AEAKLHAAE+LQAEA +Y
Sbjct: 131  IASIEKALHEMRAESAEIKVAADCKVAEAHSMVEDAQKKYTDAEAKLHAAEALQAEATQY 190

Query: 121  HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
             R+AERKLQE  AREDDLSRRI++F+ADC+ KE+EI  ERQ+LS+R+K+LQQEHER+LD 
Sbjct: 191  RRAAERKLQEAQAREDDLSRRISTFRADCDAKEKEIDLERQTLSERRKLLQQEHERVLDG 250

Query: 181  QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
            Q LLN+RED+I SK QEL   EKELEAS+ +V+E+ +ALN+EKS L +T+ SL +RE+AV
Sbjct: 251  QALLNQREDYIASKSQELDCLEKELEASKGSVQEELRALNDEKSKLGVTVASLSQREQAV 310

Query: 241  IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
            +EREA L K+EQ LL+ QE LASKES EIQK+IANHE+ LR ++ EFEAEL +  KLAED
Sbjct: 311  VEREALLNKREQDLLIMQEKLASKESVEIQKVIANHETLLRTRKLEFEAELEMNRKLAED 370

Query: 301  EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
            EIE KRRAWELR++DL QREE L E+EHDLEV+SR L D EKD+ E+ + L+EKE  L A
Sbjct: 371  EIEAKRRAWELREVDLSQREELLNEKEHDLEVKSRVLADLEKDVTEKVNFLDEKERCLNA 430

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
             EKE +L+++LL ++K E+N +K D++KSL+SL+ +KKQV+CAK+KLE MK+E  EL+VL
Sbjct: 431  AEKENELRRALLDQQKNEINKMKLDIEKSLNSLENEKKQVDCAKEKLETMKNETNELAVL 490

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
            E KLKEE+D++RAQK+ELM E D+L++EKAKFEAEWE+IDEKREEL+ EAERVA ER  V
Sbjct: 491  ETKLKEEVDMLRAQKVELMAEEDRLKVEKAKFEAEWELIDEKREELQIEAERVAEERQSV 550

Query: 481  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
             + LKD RDSLR E++ +R+QHK DV+ LN EREEFMNKMV E SEWF KIQ+E ADFLL
Sbjct: 551  CRLLKDGRDSLRVEKETIREQHKHDVELLNHEREEFMNKMVQERSEWFNKIQKEHADFLL 610

Query: 541  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
            GIEMQKR+LEN IEKRREE+E   R++EKAFE EK  E + ISSL+EKA KELEQ  LE+
Sbjct: 611  GIEMQKRELENSIEKRREEIECYLRDQEKAFELEKKNELEHISSLREKAAKELEQAALEM 670

Query: 601  KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
            K+LD ERMEIN+DR RRD EWA LN SIEEL  Q QKLE+QR+LLHA+REE+ A+ E LK
Sbjct: 671  KKLDSERMEINLDRDRRDIEWAVLNKSIEELKGQTQKLEKQRELLHAEREEVCAQIEHLK 730

Query: 661  KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDR 720
            KLEDLK+ +D M +++MQ+S +E SQKKISA R L Q++++ +AD  S ++ +  N+GD 
Sbjct: 731  KLEDLKLMLDNMELAKMQQSNMESSQKKISAIRDLRQESTVKNADKISYKRVENGNSGDV 790

Query: 721  FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINS 780
             ++PS+QK   +  P  ARFSWIKR  +L+FK S E  +   EE+S  S+HE+ASL    
Sbjct: 791  LDSPSMQKLDVSPSPGSARFSWIKRCTELIFKGSPEKPLLKSEEESLISNHENASLI--- 847

Query: 781  RKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRR 840
                    S G+                   L+S N            SE  +   RKRR
Sbjct: 848  --------SAGK-------------------LDSSN----------GFSEQVLKPGRKRR 870

Query: 841  VD---VD-CVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKN 896
            V    +D   DP     QNNKRRKQQED     S +A NH   + Q N P+ QH LT ++
Sbjct: 871  VKNSRLDGSADPWPEQRQNNKRRKQQEDAAVILSPDANNHSVTSNQENAPKTQH-LTEED 929

Query: 897  KSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNS 956
                        S NH Q         + ++IIKISEVTCE+   DNF NQEK++  Q  
Sbjct: 930  ------------SENHVQ---------VAERIIKISEVTCEIAHIDNFPNQEKVE--QQL 966

Query: 957  VAESVQD--IVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNE 1014
            + E+  D   V+ GGTN H+   + D  + P   E   M+++ Q+GN   +TE  QA + 
Sbjct: 967  IPEATCDHSAVQDGGTNGHANQGYVDHSLQPCGLEAPEMLKD-QLGNDGRVTEQQQAGSN 1025

Query: 1015 MG--EHKLECELVQSDNSKKNKELI 1037
            +   EH +    V    +  NK L+
Sbjct: 1026 ISLYEHYISINCVSFAYNIMNKLLL 1050

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451333|ref|XP_004143416.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus]

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/966 (54%), Positives = 687/966 (71%), Gaps = 67/966 (6%)

Query: 1    MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
            MGLLILE+KELAS YEQ+K+ AE AEL+ + D+A+HLSA+ EA+KRE++LKK +G+++EC
Sbjct: 75   MGLLILERKELASDYEQMKSKAETAELMYRRDQAAHLSALTEAKKREDNLKKAIGIKEEC 134

Query: 61   IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
            +ASLEKA+HE+R ESAE KVAA+S+ AEAR M+E+AQKKF EAEAKLHAAESLQAE+NR 
Sbjct: 135  VASLEKALHEMRLESAEIKVAAESRLAEARIMMEDAQKKFVEAEAKLHAAESLQAESNRC 194

Query: 121  HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
            +R+AERKL EV AREDDL RR+A FK+DC++K  EI+ ERQSLS+R+K LQQEHERLLD 
Sbjct: 195  NRAAERKLHEVEAREDDLRRRMACFKSDCDKKGEEIVLERQSLSERQKALQQEHERLLDG 254

Query: 181  QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
            Q LLN+RE++ILSK QELSR EKELE  RA++E + +A+++EKS + L   SL KREEAV
Sbjct: 255  QALLNQREEYILSKTQELSRSEKELEELRASIENERRAVHDEKSKMQLYEASLSKREEAV 314

Query: 241  IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
               E  + +++Q+LLV +E +A+KE+NEIQK++ANHES LR K S+F+AEL IK K  ED
Sbjct: 315  NRMEIMMNRRQQELLVLEEKIATKETNEIQKVVANHESTLRTKISDFDAELQIKQKAVED 374

Query: 301  EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
            EIE KRRAWELR++DL QR+E +LE+E+DLEVQSR+LV KEK++ E S  L+EKE  L A
Sbjct: 375  EIESKRRAWELREMDLKQRDEQILEKEYDLEVQSRSLVAKEKEVEELSKSLDEKEKNLKA 434

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
             E+E +L K LLQKEK+E + +K DLQ SL SL++++KQV+CAKDKLEA +SE  ELS+L
Sbjct: 435  LEQELELSKVLLQKEKDECSKMKRDLQCSLDSLEDRRKQVDCAKDKLEAFRSETNELSLL 494

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
            E+KLKEELD VR QKLELM E DKL +EKAKFEAEWEMIDEKREELR EAE +A ER+ V
Sbjct: 495  EMKLKEELDSVRVQKLELMDEADKLMVEKAKFEAEWEMIDEKREELRTEAEILAAERLAV 554

Query: 481  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
            SK +KDERD LR ER+ MR Q K D ++L+REREEF+NKM  E SEW  K+QQER D L+
Sbjct: 555  SKFIKDERDGLRLEREVMRKQFKNDRETLSREREEFLNKMTCERSEWLNKMQQERKDLLM 614

Query: 541  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
             +E QK++LENC+E+RREELE   RE+ K FE+EK  E  +I+ LK+KA K+LE+V LE 
Sbjct: 615  DVEAQKKELENCLEQRREELEGQLREKLKNFEQEKKNELDKINFLKDKATKDLEEVALET 674

Query: 601  KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
            K+L+ ERMEIN+DR+RR+REWAELNNSIEEL VQR+KLE+QR+LLHADREEI A+ ERLK
Sbjct: 675  KKLETERMEINLDRERRNREWAELNNSIEELKVQREKLEKQRELLHADREEILADIERLK 734

Query: 661  KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDR 720
            K E+LK+A+D MAV+EM +S L+ +Q  IS  R         H       + D     + 
Sbjct: 735  KFENLKVALDNMAVAEMNQSDLDVAQ-PISYPRRRPLVRDAEH-------QIDTQKITNG 786

Query: 721  FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTS-------DHED 773
            F++PSV K     PP+  RFSWIKR ++L+FK S E       E++PT        +  D
Sbjct: 787  FDSPSVLKVDGDLPPTSTRFSWIKRCSELIFKQSPER------ERAPTRYPVKNPINQAD 840

Query: 774  ASLTINSR---------------------KRQPVRYSFGEPKVILEVPSENEVVKRTVDL 812
             S +I+ +                     +RQ V+Y+ GEPKVI+EVP  N+ +     L
Sbjct: 841  QSSSISGQLFQSPEFEMDRGNEKSQRTITERQDVKYAIGEPKVIVEVPPANKNMNGVPVL 900

Query: 813  ESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDP---SELLMQNNKRRKQQEDFPRNS 869
            ESE   +       ++S+  +   +KRR   +   P    +L  +NN ++++QE+   + 
Sbjct: 901  ESEIVDDV------TLSDHRVLTGKKRRA-TNITHPDSLGQLEFENNNKKQRQEEISGDP 953

Query: 870  SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKII 929
            +E+  +    A Q N+PED            P+   + T N   Q   +EA ++IV   I
Sbjct: 954  TEDDSSCPEEATQMNMPED------------PKAFVSSTDN---QENAKEAEVVIVSTDI 998

Query: 930  KISEVT 935
             I EVT
Sbjct: 999  NIIEVT 1004

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511984|ref|XP_003524701.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1026 (52%), Positives = 719/1026 (70%), Gaps = 69/1026 (6%)

Query: 1    MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
            MGLLILEKK+LASKYEQ+KA AE++EL+ KHD A + SA+ E+RKREESLKKT+ V+  C
Sbjct: 71   MGLLILEKKDLASKYEQVKALAESSELMHKHDSAMNKSALTESRKREESLKKTVSVKDAC 130

Query: 61   IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
            IASLEKA+HE+R ESAETKVAA+SKFAEA  +++ AQ+KF EAEAK+ AAESLQAEANRY
Sbjct: 131  IASLEKALHELRTESAETKVAAESKFAEAHQLIDEAQRKFTEAEAKVRAAESLQAEANRY 190

Query: 121  HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
            H  AERKL++V ARE++L R+I SFK+DC+EK++ +I ERQSLS+R+K LQQE ERLL +
Sbjct: 191  HNVAERKLRDVEARENNLRRQIISFKSDCDEKDKAMILERQSLSERQKGLQQEQERLLQS 250

Query: 181  QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
            Q+LLN+RE+H LS+ QEL+R ++ELE ++  +E++ +AL++EK+ L L   +L++REE +
Sbjct: 251  QSLLNQREEHFLSRSQELNRLQRELEDTKGKIEKEHEALHDEKTTLKLKEATLIQREEEL 310

Query: 241  IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
             + ++ L KKEQ+LL  Q  L+++ES+E QK++A  E+ALR K+   E EL +  KL E+
Sbjct: 311  TKWKSELSKKEQELLEFQAKLSNRESDETQKVVAGQEAALRTKKYNLEVELQMLRKLVEN 370

Query: 301  EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
            EIE+KRRAWEL+++DL   E+ +L+R+H+LEV SR+L +KEKDL + S  LEEK+  L A
Sbjct: 371  EIEEKRRAWELKEVDLKHCEDQILQRQHELEVLSRSLSEKEKDLKDLSSALEEKDQMLSA 430

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
             EK+ +L K LLQKEK++V     DLQKSL+SL++K +QV+  K+KLEAMKSE G++S+L
Sbjct: 431  SEKKFELNKVLLQKEKDDVEQANQDLQKSLASLEDKIRQVDIDKEKLEAMKSETGDMSIL 490

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
            E+KLKEE+D+VR+QKLEL+ E DKL+ EKAKFEA+WE++DEK+EELRKEAE +A ER  V
Sbjct: 491  EVKLKEEIDLVRSQKLELLAEADKLKTEKAKFEADWELLDEKKEELRKEAEFIAKEREAV 550

Query: 481  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
            S  +K+ERD LR+E++ +R+Q+ +D+  L  ERE+FMNKM HEH+EWF K+QQERADFL 
Sbjct: 551  STFIKNERDQLREEKENLRNQYNQDLGYLASEREKFMNKMAHEHAEWFGKMQQERADFLR 610

Query: 541  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
             IE+QK++L N IEKRREE+ESS +EREKAFEEEK  E Q I++LKEKA KELEQV+LE+
Sbjct: 611  EIELQKQELNNLIEKRREEVESSLKEREKAFEEEKNTELQYINALKEKATKELEQVSLEM 670

Query: 601  KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
            KRL  ER EIN+DR+RR+REWAEL   IEEL VQR KL +QR+LLHADR EI A++E LK
Sbjct: 671  KRLQTERAEINLDRERRNREWAELTKCIEELEVQRDKLRKQRELLHADRIEIYAQTEELK 730

Query: 661  KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDR 720
            KLEDLK   D  A++EM +S +E +QKKISA+++L  Q SL        Q  D  NNG  
Sbjct: 731  KLEDLKAVSDDNAITEMLKSDMESNQKKISARKNLKHQ-SLT-------QGGDKINNG-- 780

Query: 721  FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSD---------- 770
            F+TP VQK+   SPPS  RFSWIKR  +L+F++S E  +E +E+    SD          
Sbjct: 781  FDTPLVQKSP-VSPPSPVRFSWIKRCTELIFRNSPEKPLERNEDSLMGSDTGNVCNGKQY 839

Query: 771  -HEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE----NNQNAAQKCK 825
               D SL  N  K Q + ++F EPKVI+EVPS ++   R  ++ESE    N ++A     
Sbjct: 840  SENDESLG-NIGKGQQIGFAFEEPKVIVEVPSLDDA--RRSEIESEAKDVNGKSAL---- 892

Query: 826  QSVSEDGIHAARKRR----VDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAE 881
              +  DG HA R++R    V     DP   + QN K R                    AE
Sbjct: 893  --LLPDGHHAGRRKRGRGNVTDKVGDPLVDVGQNKKSR--------------------AE 930

Query: 882  QSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDA 941
            QSN          K +S V +    LTS+N TQG  EE  +++VDK+I +SEVT E  DA
Sbjct: 931  QSN---------EKVQSGVSKVQQVLTSSNQTQGNTEETRVVMVDKVIHVSEVTSEKLDA 981

Query: 942  DNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGN 1001
               ++QE  D  Q+    + Q I+  G T D S      + +LP  S + G  +E   GN
Sbjct: 982  LPILSQEPRDNMQSPTFGADQCILH-GETIDRSNSKTRQEDILPCASSVLGSTEEISKGN 1040

Query: 1002 VKDLTE 1007
               ++E
Sbjct: 1041 NDQVSE 1046

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563480|ref|XP_003549990.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1026 (51%), Positives = 715/1026 (69%), Gaps = 67/1026 (6%)

Query: 1    MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
            MGLLILEKK+LASKYEQ+KA AE++EL+ KHD   + SA+ E++KREESLKKT+ ++  C
Sbjct: 71   MGLLILEKKDLASKYEQVKALAESSELMHKHDSTMNKSALTESKKREESLKKTVSIKDAC 130

Query: 61   IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
            IASLEKA+HE+R ESAETKVAA+SKF EAR +++ AQKKF EAEAK+ AAESLQAEA RY
Sbjct: 131  IASLEKALHELRTESAETKVAAESKFVEARQLIDEAQKKFTEAEAKVRAAESLQAEAKRY 190

Query: 121  HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
            H  AERKL +V ARED+L R+I SFK+DC+EK++E+I ERQSLS+R+K LQQE ERLL +
Sbjct: 191  HNVAERKLHDVEAREDNLRRQIISFKSDCDEKDKEMIIERQSLSERQKGLQQEQERLLQS 250

Query: 181  QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
            Q+LLN+RE+H LS+ QEL+R ++ELE ++   E++ +AL +EK+ L L   +L+++EE +
Sbjct: 251  QSLLNQREEHFLSRSQELNRLQRELEDTKVKFEKEHEALYDEKTTLKLKEATLIQQEEEL 310

Query: 241  IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
             + ++ L KKEQ+LL  Q  L+++ES++ QK++A+ E+ALR K+   E EL ++ KL E+
Sbjct: 311  AKWKSELSKKEQELLEFQAKLSNRESDKTQKVVASQEAALRTKKYNLEVELQMQRKLVEN 370

Query: 301  EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
            EIE+KRRAWEL+++DL   E+ +LER+H+LEV SR+L +KEKDL + S  LEEK+ +L A
Sbjct: 371  EIEEKRRAWELKEVDLKHCEDQILERQHELEVLSRSLSEKEKDLKDLSSALEEKDQRLSA 430

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
             EK+ +L K LLQKEK+ V   K D+QKSL SL++K +QV+  K+KLEAMKSE G+LS+L
Sbjct: 431  AEKDFELNKVLLQKEKDHVEQAKQDVQKSLESLEDKIRQVDMEKEKLEAMKSETGDLSIL 490

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
            E+KLKEE+D+VR+QKLEL+ E +KL+ EKAKFEAEWE++DEK+EELR+EAE +A ER  V
Sbjct: 491  EVKLKEEIDLVRSQKLELLAEAEKLKAEKAKFEAEWELLDEKKEELREEAEFIAKEREAV 550

Query: 481  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
            S  +++ERD LR+E++ + +Q+ +D+  L  ERE+FMNKM HEH+EWF K+QQERADFL 
Sbjct: 551  STFIRNERDQLREEKENLHNQYNQDLGFLASEREKFMNKMAHEHAEWFGKMQQERADFLR 610

Query: 541  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
             IE+QK++L N IEKRREE+ES  +EREKAFEEEK  E Q I++LKEKA KELEQV+LE+
Sbjct: 611  EIELQKQELNNLIEKRREEVESYLKEREKAFEEEKNTELQYINALKEKAAKELEQVSLEM 670

Query: 601  KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
            KRL  ER EIN+DR+RR+REWAEL N IEEL VQR KL++QR+LLHADR EI A++E LK
Sbjct: 671  KRLQTERAEINLDRERRNREWAELTNCIEELEVQRDKLQKQRELLHADRIEIYAQTEELK 730

Query: 661  KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDR 720
            KLEDLK   D  A++EM +S +E +QKKISA+++L  Q SL H   G D+     +NG  
Sbjct: 731  KLEDLKAVSDDNAITEMLKSDMESNQKKISARKNLKHQ-SLTH---GGDR----ISNG-- 780

Query: 721  FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDAS----- 775
            F+TP VQK+ + SPPS  RFSWIKR  +L+F++S E  +E +E+    SD  + S     
Sbjct: 781  FDTPLVQKS-TVSPPSPVRFSWIKRCTELIFRNSPERPLERNEDFLMGSDTGNVSNLKKH 839

Query: 776  -----LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE----NNQNAAQKCKQ 826
                    N  KRQ + ++  EPKVI+EVPS ++   R  ++ESE    N ++A      
Sbjct: 840  LENDEPLGNIGKRQEIGFALEEPKVIVEVPSLDDA--RRSEIESEAKDVNGKSAL----- 892

Query: 827  SVSEDGIHAARKRRVDVDCVD----PSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQ 882
             +  DG  A R +R   +  D    P   + QN K R +                   EQ
Sbjct: 893  -LIPDGHRAGRLKRRRGNMTDKVGNPFVDVGQNKKSRAE-------------------EQ 932

Query: 883  SNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILI-VDKIIKISEVTCEMTDA 941
            +N          K +S V +    LTS+N TQG  EE  ++I VDK+I +SEVT E  D 
Sbjct: 933  TN---------EKVQSGVSKVQQVLTSSNQTQGNTEETRVVIMVDKVIHVSEVTSEKLDV 983

Query: 942  DNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGN 1001
               ++QE  D   +    + Q  +  G T D S      + VLP  S + G  +E   GN
Sbjct: 984  LPILSQEPRDNFPSPTLGADQCNLH-GETIDQSNYKTRQEDVLPCASSVLGSTEEISKGN 1042

Query: 1002 VKDLTE 1007
             + ++E
Sbjct: 1043 NEQVSE 1048

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256486|ref|NP_201378.5| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|334188653|ref|NP_001190626.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010720|gb|AED98103.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010722|gb|AED98105.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/953 (51%), Positives = 672/953 (70%), Gaps = 76/953 (7%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ KEC
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139

Query: 61  IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
           I+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQAEANRY
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199

Query: 121 HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
           HR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHERLLDA
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259

Query: 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
           Q  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    KREEAV
Sbjct: 260 QVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEAV 319

Query: 241 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
            ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E 
Sbjct: 320 SERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEV 379

Query: 301 EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
           EIE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A
Sbjct: 380 EIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVA 439

Query: 361 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
            E++ + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS L
Sbjct: 440 TEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTL 499

Query: 421 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
           E+KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELRKEAE +  +R   
Sbjct: 500 EMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAF 559

Query: 481 SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
           S  LKDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLL
Sbjct: 560 SMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLL 619

Query: 541 GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
           GIEMQKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE AEKELE V +E+
Sbjct: 620 GIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVEL 679

Query: 601 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
           KRLD ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A+R+EI+ E E LK
Sbjct: 680 KRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELK 739

Query: 661 KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD------- 713
           KLE+LK+A+D M++++MQ S LE S +K+SA   L Q+       +  D + D       
Sbjct: 740 KLENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VSRDDELDLQNGVST 790

Query: 714 VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHED 773
           V+N+ D +N+ S+++    +P S   FSWIKR  +L+FK S E S               
Sbjct: 791 VSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST-------------- 835

Query: 774 ASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGI 833
                       + + + E      VPSE       + LES   +  A     S++ + +
Sbjct: 836 ------------LMHHYEEEGG---VPSEK------LKLESSRREEKAYTEGLSIAVERL 874

Query: 834 HAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLT 893
            A RKRR +    + SE    NNK+RK   D  +  S+EA     ++   N+PED+H L 
Sbjct: 875 EAGRKRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELP 930

Query: 894 SKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFIN 946
           S +++  P G+                  +++ + +KI+ VTCE T+  N + 
Sbjct: 931 S-SQTQTPSGM------------------VVISETVKITRVTCE-TEVTNKVT 963

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481650|ref|NP_001154799.1| protein little nuclei4 [Arabidopsis thaliana] gi|26397174|sp|Q9FLH0.1|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi|10177335|dbj|BAB10684.1| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi|332010721|gb|AED98104.1| protein little nuclei4 [Arabidopsis thaliana]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/980 (50%), Positives = 672/980 (68%), Gaps = 103/980 (10%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ KEC
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139

Query: 61  IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
           I+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQAEANRY
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199

Query: 121 HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
           HR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHERLLDA
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259

Query: 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREE-- 238
           Q  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    KREE  
Sbjct: 260 QVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVC 319

Query: 239 -------------------------AVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273
                                    AV ERE+SL KKEQ+LLV++E +ASKES  IQ ++
Sbjct: 320 FYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVL 379

Query: 274 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQ 333
           AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQ
Sbjct: 380 ANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQ 439

Query: 334 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 393
           SRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL
Sbjct: 440 SRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSL 499

Query: 394 DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 453
           ++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFE
Sbjct: 500 EDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFE 559

Query: 454 AEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 513
           AEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNRER
Sbjct: 560 AEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNRER 619

Query: 514 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEE 573
           EEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+
Sbjct: 620 EEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQ 679

Query: 574 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 633
           EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL V
Sbjct: 680 EKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKV 739

Query: 634 QRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKR 693
           QR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA  
Sbjct: 740 QREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA-- 797

Query: 694 HLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRF 746
            L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FSWIKR 
Sbjct: 798 -LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRC 849

Query: 747 ADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVV 806
            +L+FK S E S                           + + + E      VPSE    
Sbjct: 850 TNLIFKTSPEKST--------------------------LMHHYEEEGG---VPSEK--- 877

Query: 807 KRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFP 866
              + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK   D  
Sbjct: 878 ---LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVT 930

Query: 867 RNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVD 926
           +  S+EA     ++   N+PED+H L S +++  P G+                  +++ 
Sbjct: 931 QKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------------VVIS 971

Query: 927 KIIKISEVTCEMTDADNFIN 946
           + +KI+ VTCE T+  N + 
Sbjct: 972 ETVKITRVTCE-TEVTNKVT 990

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188655|ref|NP_001190627.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010724|gb|AED98107.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/952 (51%), Positives = 665/952 (69%), Gaps = 83/952 (8%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ K+ 
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKDL 139

Query: 61  I--------ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 112
                    + LEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+
Sbjct: 140 FIDFVLFFFSQLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEA 199

Query: 113 LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 172
           LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQ
Sbjct: 200 LQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQ 259

Query: 173 EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 232
           EHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L  
Sbjct: 260 EHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALAL 319

Query: 233 LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 292
             KREEAV ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL 
Sbjct: 320 CAKREEAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELE 379

Query: 293 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 352
            K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+
Sbjct: 380 CKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLD 439

Query: 353 EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKS 412
           EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KS
Sbjct: 440 EKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKS 499

Query: 413 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 472
           E  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELRKEAE 
Sbjct: 500 ETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEY 559

Query: 473 VAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ 532
           +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ
Sbjct: 560 ITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQ 619

Query: 533 QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 592
           +ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE AEKE
Sbjct: 620 RERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKE 679

Query: 593 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEI 652
           LE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A+R+EI
Sbjct: 680 LEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEI 739

Query: 653 QAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKF 712
           + E E LKKLE+LK+A+D M++++MQ S LE S +K+SA   L Q+       +  D + 
Sbjct: 740 RHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VSRDDEL 790

Query: 713 D-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEK 765
           D       V+N+ D +N+ S+++    +P S   FSWIKR  +L+FK S E S       
Sbjct: 791 DLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST------ 843

Query: 766 SPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCK 825
                               + + + E      VPSE       + LES   +  A    
Sbjct: 844 --------------------LMHHYEEEGG---VPSEK------LKLESSRREEKAYTEG 874

Query: 826 QSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNL 885
            S++ + + A RKRR +    + SE    NNK+RK   D  +  S+EA     ++   N+
Sbjct: 875 LSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVISSPQNV 930

Query: 886 PEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCE 937
           PED+H L S +++  P G+                  +++ + +KI+ VTCE
Sbjct: 931 PEDKHELPS-SQTQTPSGM------------------VVISETVKITRVTCE 963

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/973 (50%), Positives = 669/973 (68%), Gaps = 106/973 (10%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ KEC
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139

Query: 61  IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
           I+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQAEANRY
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199

Query: 121 HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
           HR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHERLLDA
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259

Query: 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREE-- 238
           Q  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    KREE  
Sbjct: 260 QVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVC 319

Query: 239 -------------------------AVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273
                                    AV ERE+SL KKEQ+LLV++E +ASKES  IQ ++
Sbjct: 320 FYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVL 379

Query: 274 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQ 333
           AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQ
Sbjct: 380 ANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQ 439

Query: 334 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 393
           SRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL
Sbjct: 440 SRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSL 499

Query: 394 DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 453
           ++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFE
Sbjct: 500 EDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFE 559

Query: 454 AEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 513
           AEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNRER
Sbjct: 560 AEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNRER 619

Query: 514 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEE 573
           EEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+
Sbjct: 620 EEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQ 679

Query: 574 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 633
           EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL V
Sbjct: 680 EKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKV 739

Query: 634 QRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKR 693
           QR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA  
Sbjct: 740 QREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA-- 797

Query: 694 HLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRF 746
            L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FSWIKR 
Sbjct: 798 -LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRC 849

Query: 747 ADLVFKHSGENS--VENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENE 804
            +L+FK S E S  + + EE+                                 VPSE  
Sbjct: 850 TNLIFKTSPEKSTLMHHYEEEGG-------------------------------VPSEK- 877

Query: 805 VVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQED 864
                + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK   D
Sbjct: 878 -----LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--D 928

Query: 865 FPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILI 924
             +  S+EA     ++   N+PED+H L S +++  P G+                  ++
Sbjct: 929 VTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------------VV 969

Query: 925 VDKIIKISEVTCE 937
           + + +KI+ VTCE
Sbjct: 970 ISETVKITRVTCE 982

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284807022|dbj|BAI67716.1| nuclear matrix constituent protein 2 [Apium graveolens]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/757 (54%), Positives = 570/757 (75%), Gaps = 11/757 (1%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLLI+E+KE  SK+EQ +A+  +AEL++KHD+ASH++A+AEA+KRE++LKK + +E+EC
Sbjct: 70  MGLLIMERKEWVSKFEQTEAALNSAELMRKHDKASHVAALAEAKKREDNLKKAIEIEREC 129

Query: 61  IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
           +A++EK +HE+RAE AETKV+ADSK AEAR M+E+A KK +EA+AK+ AAESL+AEA R+
Sbjct: 130 LANIEKTLHELRAEYAETKVSADSKLAEARSMMEDALKKLSEADAKMLAAESLEAEAGRF 189

Query: 121 HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
           HR+AERKL EV AREDDL RR ASFK +C+ K+ E + ERQSL +R+K LQQ  +RL+D 
Sbjct: 190 HRAAERKLHEVEAREDDLRRRAASFKTECDTKDEEFLHERQSLCERQKSLQQSQQRLVDG 249

Query: 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
           Q LLN+RE HI  + QEL+RKEKELEAS+  + E+ + L EE++NL +   SL  REE V
Sbjct: 250 QELLNKRESHIFDRTQELNRKEKELEASKLKLGEELQVLAEEQANLKIKASSLSLREEVV 309

Query: 241 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
            +RE  ++K+E+ +LV Q+ L  KES  IQ+++AN+E++L  K+S+FEAEL ++ KL  D
Sbjct: 310 TKRECEVKKREEGVLVLQDKLEKKESERIQQLLANYEASLSNKKSDFEAELEMRRKLVHD 369

Query: 301 EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
           +IE KRR WELR++DL  REE + E+EH+L++QSRA+VDKE  L ER  LL EKEN L A
Sbjct: 370 DIENKRRDWELREVDLHHREELISEKEHELDMQSRAVVDKESYLTERFSLLVEKENSLDA 429

Query: 361 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
            +KE   K+SLLQKEKEE+N  K DLQKSL +L  +K+Q++ A++K++AMKSE  EL VL
Sbjct: 430 MKKEIQSKESLLQKEKEEINSSKLDLQKSLDALKNEKQQIHHAEEKMKAMKSETDELFVL 489

Query: 421 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
           E KLKEE++ +RAQK EL VE D+++  K KFE EW+ IDEKR+EL+KEAE +  ER  +
Sbjct: 490 ESKLKEEIETIRAQKQELEVEADEMKELKLKFEVEWQSIDEKRKELQKEAECINGEREAL 549

Query: 481 SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
            ++LKDER+SL+ E+DA+ D++ R+ +SL+R+REEF++KM HE SE F+ IQ+ER+DF L
Sbjct: 550 YRTLKDERNSLKLEKDAIWDEYTRNNESLSRDREEFLSKMEHERSELFSNIQKERSDFSL 609

Query: 541 GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
             E+Q +DLE+ + KRREE+ES+  ERE+AFEEEK +E  +I SL+E   +E EQV LE+
Sbjct: 610 AFEVQTKDLEDRLAKRREEIESNLAERERAFEEEKRKELMRIDSLRETLARETEQVNLEL 669

Query: 601 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
            RLD ER EIN+DR++RDREWAELN+SIEEL  QRQKLE+QR+L+ AD+E+I  + E LK
Sbjct: 670 NRLDTERREINLDREKRDREWAELNSSIEELKAQRQKLEKQRELMRADKEDILVQIEHLK 729

Query: 661 KLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDR 720
           +LED K+  D +A++++Q+S ++ S K++SA+R L QQ+       G D      NNG  
Sbjct: 730 QLEDRKVVPDRLALTDIQQSDVQPS-KRVSARRFLKQQS-------GIDSGCRSENNG-- 779

Query: 721 FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGEN 757
            NT   + +   SPP    FSW+KR A  + +    N
Sbjct: 780 -NTSPGKSSVIISPPVSTPFSWLKRCASSLLEQKASN 815

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1047
TAIR|locus:2169950	1042	LINC4 "LITTLE NUCLEI4" [Arabid	0.732	0.736	0.379	4.1e-120
TAIR|locus:2019529	1132	LINC1 "AT1G67230" [Arabidopsis	0.603	0.558	0.270	1.6e-68
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.646	0.600	0.256	5.4e-59
TAIR|locus:2012423	1085	LINC3 "LITTLE NUCLEI3" [Arabid	0.491	0.474	0.266	1.6e-44
ZFIN|ZDB-GENE-050208-317	1422	tnks1bp1 "tankyrase 1 binding	0.335	0.246	0.230	6.4e-15
GENEDB_PFALCIPARUM|PF11_0486	2055	PF11_0486 "MAEBL, putative" [P	0.333	0.169	0.277	2.4e-14
UNIPROTKB|Q8IHP3	2055	PF11_0486 "MAEBL, putative" [P	0.333	0.169	0.277	2.4e-14
DICTYBASE|DDB_G0271058	1528	vilC "villin-like protein C" [	0.501	0.343	0.235	4e-14
SGD|S000002216	1790	USO1 "Protein involved in the	0.787	0.460	0.190	8e-14
UNIPROTKB|G1K307	1972	MYH11 "Myosin-11" [Gallus gall	0.411	0.218	0.217	6e-09

TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 301/793 (37%), Positives = 421/793 (53%)

Query:    13 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR 72
             S Y    A A+  E   K D       I+   K    ++      K    S     H + 
Sbjct:   113 SAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAH-VM 171

Query:    73 AESAETKVA-ADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR----YHRSAERK 127
              E A  K+A A++K   A  +   A +    AE KL   ES + +  R    +    E K
Sbjct:   172 IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETK 231

Query:   128 LQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNER 187
               E+V     L+ R  S + +             SL+ R+  +    + L + +  L+  
Sbjct:   232 ENEMVIERQTLNERRKSLQQE----HERLLDAQVSLNQREDHIFARSQELAELEKGLDTA 287

Query:   188 EDHILSKLQELSRKEKELEASRANVEEKFKA-LNEEKSNLDLTL-----VSLLKREEAVI 241
             +     + +    K+  LE + A   ++ +       S L L L        L  + AV 
Sbjct:   288 KTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVS 347

Query:   242 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 301
             ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E E
Sbjct:   348 ERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVE 407

Query:   302 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 361
             IE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A 
Sbjct:   408 IESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVAT 467

Query:   362 EKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLE 421
             E++ +            +  +                 V+ A  KLEA+KSE  ELS LE
Sbjct:   468 EEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLE 527

Query:   422 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXX 481
             +KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID                     
Sbjct:   528 MKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFS 587

Query:   482 XXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 541
                KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLG
Sbjct:   588 MYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLG 647

Query:   542 IEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIK 601
             IEMQKR+LE CI                          ++I S           V +E+K
Sbjct:   648 IEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELK 707

Query:   602 RLDLERMEINMDRQRRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKK 661
             RLD ER+EI +DR+RR+REWAEL +S+EEL V             A+R+EI+ E E LKK
Sbjct:   708 RLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKK 767

Query:   662 LEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-VTNNGDR 720
             LE+LK+A+D M++++MQ S LE S +K+SA   L Q+      +L        V+N+ D 
Sbjct:   768 LENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKVVSRDDELDLQNGVSTVSNSEDG 824

Query:   721 FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTI 778
             +N+ S+++    +P S   FSWIKR  +L+FK S E S  + + EE+      +   L +
Sbjct:   825 YNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGGVPSEK---LKL 880

Query:   779 NSRKRQPVRYSFG 791
              S +R+   Y+ G
Sbjct:   881 ESSRREEKAYTEG 893

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0006997 "nucleus organization" evidence=IMP

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 1.6e-68, Sum P(2) = 1.6e-68
 Identities = 171/632 (27%), Positives = 300/632 (47%)

Query:     1 MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
             MGLL++EKKE +S+YE ++ + E      K +R +HL AIA+  KREE L+K LG+EK+C
Sbjct:    70 MGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLIAIADVEKREEGLRKALGIEKQC 129

Query:    61 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
                LEKA+ E+RAE+AE K  ADSK  EA  +V + ++K  E EAKL A ++  AE +R 
Sbjct:   130 ALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEEKSLEVEAKLRAVDAKLAEVSRK 189

Query:   121 HRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDA 180
                 ERK +EV ARE  L R   S+ A+            + L + ++ LQ+  ER+  +
Sbjct:   190 SSDVERKAKEVEARESSLQRERFSYIAEREADEATLSKQREDLREWERKLQEGEERVAKS 249

Query:   181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 240
             Q ++ +RED      + + +K KELE ++  ++    A+ + + ++   +  L  RE+  
Sbjct:   250 QMIVKQREDRANESDKIIKQKGKELEEAQKKIDAANLAVKKLEDDVSSRIKDLALREQET 309

Query:   241 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 300
                + S++ K ++L   QE L ++E   +Q+++  H++ L   Q EFE E+  K K  +D
Sbjct:   310 DVLKKSIETKARELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFELEMEQKRKSIDD 369

Query:   301 EIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
              ++ K    E R+ +    EE + +RE  L+ +     +KE D   R   +  +E  L +
Sbjct:   370 SLKSKVAEVEKREAEWKHMEEKVAKREQALDRKLEKHKEKENDFDLRLKGISGREKALKS 429

Query:   361 FEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVL 420
              EK  +            +  +                 +N  KD+L   + E  E   L
Sbjct:   430 EEKALETEKKKLLEDKEIILNLKALVEKVSGENQAQLSEINKEKDELRVTEEERSEYLRL 489

Query:   421 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXX 480
             + +LKE+++  R+Q+  L  E + L+ ++  FE EWE +D                    
Sbjct:   490 QTELKEQIEKCRSQQELLQKEAEDLKAQRESFEKEWEELDERKAKIGNELKNITDQKEKL 549

Query:   481 XXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
                   E + L++E+ A  +  +R++++L   +  F   M +E S    K + ER+  L 
Sbjct:   550 ERHIHLEEERLKKEKQAANENMERELETLEVAKASFAETMEYERSMLSKKAESERSQLLH 609

Query:   541 GIEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEI 600
              IEM+KR LE+ +                            I+            +  E 
Sbjct:   610 DIEMRKRKLESDMQTILEEKERELQAKKKLFEEEREKELSNINYLRDVARREMMDMQNER 669

Query:   601 KRLDLERMEINMDRQRRDREWAELNNSIEELM 632
             +R++ E++E++  +   + +  E+   +++L+
Sbjct:   670 QRIEKEKLEVDSSKNHLEEQQTEIRKDVDDLV 701

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006997 "nucleus organization" evidence=IGI;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 5.4e-59, Sum P(3) = 5.4e-59
 Identities = 174/679 (25%), Positives = 308/679 (45%)

Query:     1 MGLLILEKKELASKYEQI-KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKE 59
             MGLL++E KEL SK+EQ+ +A  EA E+L K +++SHL A+    +REE+L+K LG+EK+
Sbjct:   103 MGLLLMENKELVSKHEQLNQAFQEAQEIL-KREQSSHLYALTTVEQREENLRKALGLEKQ 161

Query:    60 CIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR 119
             C+  LEKA+ EI+ E+++ ++++++K  EA  +V +   + ++ E K+++AES  AEA R
Sbjct:   162 CVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKLAEATR 221

Query:   120 YHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLD 179
                  + +L+EV  RE  L +   SF  +            + L++ +K LQ + E + +
Sbjct:   222 KSSELKLRLKEVETRESVLQQERLSFTKERESYEGTFQKQREYLNEWEKKLQGKEESITE 281

Query:   180 AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEA 239
              +  LN+RE+ +    ++L  KEKELE     V+       E + ++   L  L  +E+ 
Sbjct:   282 QKRNLNQREEKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKE 341

Query:   240 VIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE 299
                 + +L  KE +L   +E L ++E  EIQK+I + +  L  K  EFE E     K  +
Sbjct:   342 AHTLQITLLAKENELRAFEEKLIAREGTEIQKLIDDQKEVLGSKMLEFELECEEIRKSLD 401

Query:   300 DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 359
              E+++K    E + +++   EE L +R   +  +   + +KE DL  +   ++E+E  + 
Sbjct:   402 KELQRKIEELERQKVEIDHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQ 461

Query:   360 AFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSV 419
             A EK               +  +                 +      LE  K E  E   
Sbjct:   462 AEEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLR 521

Query:   420 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXX 479
             L+ +LK +++  R  +  L  E + L+ EK +FE EWE++D                   
Sbjct:   522 LQSELKSQIEKSRVHEEFLSKEVENLKQEKERFEKEWEILDEKQAVYNKERIRISEEKEK 581

Query:   480 XXXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFL 539
                    E + L++E  A+R Q  +++D +  +RE F   M HE S    K++ E++  +
Sbjct:   582 FERFQLLEGERLKKEESALRVQIMQELDDIRLQRESFEANMEHERSALQEKVKLEQSKVI 641

Query:   540 LGIEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLE 599
               +EM +R+LE  +                            I+           ++  +
Sbjct:   642 DDLEMMRRNLEIELQERKEQDEKDLLDRMAQFEDKRMAELSDINHQKQALNREMEEMMSK 701

Query:   600 IKRLDLERMEINMDRQRRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERL 659
                L  E  EI   + +   +  E++N I EL                +R    A  ++L
Sbjct:   702 RSALQKESEEIAKHKDKLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKL 761

Query:   660 KKLEDLKIAVDYMAVSEMQ 678
             K        V+   +S++Q
Sbjct:   762 KDCGSCGQLVNDFVLSDLQ 780

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
 Identities = 138/517 (26%), Positives = 245/517 (47%)

Query:     1 MGLLILEKKELASKYEQIK-ASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKE 59
             MGLL++EKK+  S   +++ A  EA E+L K ++ S+   + EA KREE+L+K L  EK+
Sbjct:    81 MGLLLIEKKQWTSTNNELQQAYDEAMEML-KREKTSNAITLNEADKREENLRKALIDEKQ 139

Query:    60 CIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR 119
              +A LE  +   + E +  K  +++K  EA  +V   ++K  E + +   AE   +  NR
Sbjct:   140 FVAELENDLKYWQREHSVVKSTSEAKLEEANALVIGMKEKALEVDRERAIAEEKFSVMNR 199

Query:   120 YHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLD 179
                  ERKL+EV  RE    R   S   +            + L + +K L  E +RL +
Sbjct:   200 KSSELERKLKEVETREKVHQREHLSLVTEREAHEAVFYKQREDLQEWEKKLTLEEDRLSE 259

Query:   180 AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEA 239
              +  +N RE+ ++   + + +KEK LE  +  +      L E++ ++ + L  +  +E+ 
Sbjct:   260 VKRSINHREERVMENERTIEKKEKILENLQQKISVAKSELTEKEESIKIKLNDISLKEKD 319

Query:   240 VIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE 299
                 +A +  KE++L   +E L  +E  EI K++ + ++ L  ++ EFE EL    +  +
Sbjct:   320 FEAMKAKVDIKEKELHEFEENLIEREQMEIGKLLDDQKAVLDSRRREFEMELEQMRRSLD 379

Query:   300 DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 359
             +E+E K+   E   +++  +EE L +RE  LE +   +  KEKDL  R   ++EKE  L 
Sbjct:   380 EELEGKKAEIEQLQVEISHKEEKLAKREAALEKKEEGVKKKEKDLDARLKTVKEKEKALK 439

Query:   360 AFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSV 419
             A EK+              +  +                 +    + L   K E  E   
Sbjct:   440 AEEKKLHMENERLLEDKECLRKLKDEIEEIGTETTKQESRIREEHESLRITKEERVEFLR 499

Query:   420 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXX 479
             L+ +LK+++D V+ ++  L+ E ++L+ +K +FE EWE +D                   
Sbjct:   500 LQSELKQQIDKVKQEEELLLKEREELKQDKERFEKEWEALDKKRANITREQNEVAEENEK 559

Query:   480 XXXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEF 516
                    E+  L++E    RD  KR++D +  ++E F
Sbjct:   560 LRNLQISEKHRLKREEMTSRDNLKRELDGVKMQKESF 596

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0005654 "nucleoplasm" evidence=IDA

ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 211 (79.3 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
 Identities = 88/381 (23%), Positives = 170/381 (44%)

Query:     7 EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 66
             +++EL  K E+ +  AE     QK +  + +    + R+ EE  +K   +E++     ++
Sbjct:   407 QEEELKRKMEEERRQAEKEIERQKEEERARMEKQQKERELEEKRRKIQEMERQRKEERQR 466

Query:    67 AVHEIRA------ESAETKVAADSKFA-EARCMVENAQ---KKFAEAEAKLHAAESLQAE 116
                E         E  E K   + +   E R   E  +   KK  E E +    + L+ +
Sbjct:   467 QEREKEERLKKEREMEERKRIEEERLRQEERLRQEREKERVKKEKEMEEERQRVQELERQ 526

Query:   117 ANRYHRSAERKLQEVVAREDDLS---RRIASFKADCXXXXXXXXXXXQSLSDRKKILQQE 173
                  R  E +  E + +E ++    RRI   +              + +   K+ +++E
Sbjct:   527 KEEERRRKEEEEMERIRKEKEIEEERRRIQELERQMEEERLRKEQEMERIRKEKE-MEEE 585

Query:   174 HERLLDAQTLLNEREDHILSKLQELSR--KEKELEASRANVEEKFKALNEEKSNLDLTLV 231
               R+   Q L  + E+  L K QE+ R  KEKE+E  R  ++E  +   E++   +  + 
Sbjct:   586 RRRI---QELERQMEEERLRKEQEMERIRKEKEMEEERRRIQELERQKEEDRLRKEREIA 642

Query:   232 SLLKREEAVIER----EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSE- 286
              L K +E   ER    E   QK+E++L   QE    K+  EI++     +   R K+ E 
Sbjct:   643 RLKKEKEMEEERRRIQELERQKEEERLRKEQEIERIKKEKEIEEKRQRIQELERQKEEER 702

Query:   287 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE-VQSRALVDKEKDLV 345
                E  ++    E EIE++R    +++L+  Q+EE  L +E ++E ++    +++E+  +
Sbjct:   703 LRKEREMERIRKEKEIEEERL--RIQELER-QKEEERLRKEQEMERIKKEKEMEEERRRI 759

Query:   346 ERSHLLEEKENKLIAFEKEAD 366
             ++  L  +KE + +  E+E +
Sbjct:   760 QK--LERQKEEERLRKEREME 778

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 235 (87.8 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
 Identities = 107/385 (27%), Positives = 184/385 (47%)

Query:     7 EKK---ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 63
             EKK   EL  K E+ K + E  +  ++  +A  L   AE +K+ + LKK    EK+   +
Sbjct:  1384 EKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK-AEEKKKAEN 1442

Query:    64 LEKAVHEIRAES----AETKVAADS--KFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 117
             L+KA  + +A+     AE K  AD   K AE +   +  +KK   AE K  A E  +AE 
Sbjct:  1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK---AEEKKKADELKKAEE 1499

Query:   118 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ--EHE 175
              +  ++ E K  E   + D+L +     KAD            +   ++KK+ Q+  E E
Sbjct:  1500 KK--KADELKKAEEKKKADELKKAEEKKKAD----ELKKAEELKKAEEKKKVEQKKREEE 1553

Query:   176 R---LLDAQTLLNEREDHILSKLQELSRKEKELEAS--RANVEEKFKALNEEKSNLDLTL 230
             R    L    +L + E   + ++ +L  +EK+++A   +   EEK KA   +K   +   
Sbjct:  1554 RRNMALRRAEILKQIEKKRIEEVMKLYEEEKKMKAEQLKKEEEEKIKAEQLKKEEEEKKK 1613

Query:   231 VSLLKREEAVIEREAS-LQKKEQKLLVSQETLASKESNEIQKI--IANHESALRVKQSEF 287
             V  LK++E   +++A  L+K+E++  +  E L  KE  E +K   +   E   + K  + 
Sbjct:  1614 VEQLKKKEEEEKKKAEQLKKEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQL 1673

Query:   288 EAELAIKYK---LAEDEIEKKRRAWELRDLDLGQR--EESLLEREHDLEVQSRALV--DK 340
             + E   K K   L + E E+K++A +L+  +   +   E L + E + + ++  L   ++
Sbjct:  1674 KKEEEEKKKVEQLKKKEEEEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEE 1733

Query:   341 EKDLVERSHLLEEKENKLIAFEKEA 365
             EK  V++    EEK+ + I  EKEA
Sbjct:  1734 EKKKVQQLKKEEEKKAEEIRKEKEA 1758

GO:0016020 "membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 235 (87.8 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
 Identities = 107/385 (27%), Positives = 184/385 (47%)

Query:     7 EKK---ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 63
             EKK   EL  K E+ K + E  +  ++  +A  L   AE +K+ + LKK    EK+   +
Sbjct:  1384 EKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK-AEEKKKAEN 1442

Query:    64 LEKAVHEIRAES----AETKVAADS--KFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 117
             L+KA  + +A+     AE K  AD   K AE +   +  +KK   AE K  A E  +AE 
Sbjct:  1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK---AEEKKKADELKKAEE 1499

Query:   118 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ--EHE 175
              +  ++ E K  E   + D+L +     KAD            +   ++KK+ Q+  E E
Sbjct:  1500 KK--KADELKKAEEKKKADELKKAEEKKKAD----ELKKAEELKKAEEKKKVEQKKREEE 1553

Query:   176 R---LLDAQTLLNEREDHILSKLQELSRKEKELEAS--RANVEEKFKALNEEKSNLDLTL 230
             R    L    +L + E   + ++ +L  +EK+++A   +   EEK KA   +K   +   
Sbjct:  1554 RRNMALRRAEILKQIEKKRIEEVMKLYEEEKKMKAEQLKKEEEEKIKAEQLKKEEEEKKK 1613

Query:   231 VSLLKREEAVIEREAS-LQKKEQKLLVSQETLASKESNEIQKI--IANHESALRVKQSEF 287
             V  LK++E   +++A  L+K+E++  +  E L  KE  E +K   +   E   + K  + 
Sbjct:  1614 VEQLKKKEEEEKKKAEQLKKEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQL 1673

Query:   288 EAELAIKYK---LAEDEIEKKRRAWELRDLDLGQR--EESLLEREHDLEVQSRALV--DK 340
             + E   K K   L + E E+K++A +L+  +   +   E L + E + + ++  L   ++
Sbjct:  1674 KKEEEEKKKVEQLKKKEEEEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEE 1733

Query:   341 EKDLVERSHLLEEKENKLIAFEKEA 365
             EK  V++    EEK+ + I  EKEA
Sbjct:  1734 EKKKVQQLKKEEEKKAEEIRKEKEA 1758

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)]

 Score = 223 (83.6 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 132/561 (23%), Positives = 233/561 (41%)

Query:     7 EKKELASKYEQI-KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLE 65
             E++E   K E+  K   E  E L+  D+A+ +++         S+  +       I+   
Sbjct:    61 EREERRKKREEDEKILKEEMEKLES-DKANRITSPKTPTSGSSSIALSPSTSSYSISENS 119

Query:    66 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE 125
                      SA+  ++A  +  + R  +E   KK    + K+      + E  R  +  E
Sbjct:   120 GGDSSTSLLSAQA-ISAKEEREKRRKELEEEAKKLELEQQKIREEREKRKEERRLQQEEE 178

Query:   126 -RKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXX--QSLSDRKKILQQEHERLLDAQT 182
              RKLQ+++ ++D  S +I   K +              + L+D+K   ++E + L D   
Sbjct:   179 QRKLQDLLDKKD--SEKIEKLKQEENEKLEKEEKERIEKELTDKK---EKEEKELADK-- 231

Query:   183 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 242
             L  ER++  L+   E  +KEKE E   A+  EK +   E+K   +  L   L++E    E
Sbjct:   232 LEKERQEKELADKLEKEKKEKE-EKELADKLEKERLDKEKKDKEEKELADKLEKESQEKE 290

Query:   243 REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKY------K 296
                 L+K+++     ++    KE  E Q+     + A   K+ E E ELA K       K
Sbjct:   291 LAEKLEKEKELADKLEKEQKEKEEKERQEKELADKLAKEQKEKE-EKELADKLEKERQEK 349

Query:   297 LAEDEIEKKRRAWELRD-LDLGQREESLLEREHDLEVQSRALVDK-EKDLVERSHLLEEK 354
                D++EK+++  EL D L+  ++E+  LE+  + E Q + L DK  K+  E+    E++
Sbjct:   350 ELADKLEKEKQEKELADKLEKEKQEKESLEKL-EKEKQEKELADKLAKEQKEKEEKEEKE 408

Query:   355 EN-KLIAFEKEA-DXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKS 412
             E  K    EKE  D              +                      K+KLE   +
Sbjct:   409 EKEKQEKEEKERKDKELAAAAAAAETEKLEKERLEKEKKELEEKELAEKLEKEKLEKELT 468

Query:   413 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA-KFEAEWEMIDXXXXXXXXXXX 471
             +  E    E +L ++L+  +  K EL  + +K Q EK  K   E E+ D           
Sbjct:   469 DKLEKEKKEKELADKLEKEKQDK-ELADKLEKEQKEKEEKQRKEKELADKLEKEKQDKEL 527

Query:   472 XXXXXXXXXXXXXKDER--DSLRQERD--AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 527
                          K++   D L +E+    + D+  ++ +  +++ +EF  K+  E  E 
Sbjct:   528 ADKLAKEKEEKERKEKELADKLEKEKKDKELADKVTKEKEEKDKKEKEFKLKLEKEQKEK 587

Query:   528 FTKIQQERADFLLGIEMQKRD 548
               K++QER +F    E ++RD
Sbjct:   588 ELKLKQER-EFA---EKEERD 604

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 221 (82.9 bits), Expect = 8.0e-14, P = 8.0e-14
 Identities = 173/907 (19%), Positives = 351/907 (38%)

Query:     3 LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIA 62
             +L  E K +    +++    +  E   K ++ + L   +   K+E+S+K TL    E I 
Sbjct:   794 ILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIK-TLEKGLETIL 852

Query:    63 SLEKAVHEIRAESAETKVAADSKFAEARCM--VENAQKKFAEAEAKLHAAESLQAEANRY 120
             S +K     +AE    K+  D  FA +R M  VE   K   + + K +     Q E    
Sbjct:   853 SQKK-----KAEDGINKMGKDL-FALSREMQAVEENCKNLQKEKDKSNVNH--QKETKSL 904

Query:   121 HRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDA 180
                   K+ E+ A  ++L       K  C           + L + K   Q  H+ L+  
Sbjct:   905 KEDIAAKITEIKAINENLEE----MKIQCNNLSKEKEHISKELVEYKSRFQS-HDNLVAK 959

Query:   181 QT-----LLN-----EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 230
              T     L N     + E+  L K  E S+ E  ++ S  N++ K  ++++EK N  +  
Sbjct:   960 LTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLS--NLQNKIDSMSQEKENFQIER 1017

Query:   231 VSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI----QKI----IANHESALRV 282
              S+ K  E + +  + L++ +++++   ++   +  ++I    +K+     AN E+  ++
Sbjct:  1018 GSIEKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKI 1077

Query:   283 KQ-----SEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL 337
              +      E EAELA  YK  ++E+E K    E    ++ + EE L E +  LE ++   
Sbjct:  1078 SELTKTREELEAELAA-YKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATET 1136

Query:   338 VDKEKDLVERSHLLEEKENKLIA-FEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXX 396
               +   L      LE++   L A  +K  +            ++ +              
Sbjct:  1137 KQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESI 1196

Query:   397 XXXVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV--ETDKLQLEKAKFEA 454
                 +  + +++AMKS + E S L+   K E+D +  Q  EL    ET++  L ++    
Sbjct:  1197 KKKNDELEGEVKAMKSTSEEQSNLK---KSEIDALNLQIKELKKKNETNEASLLESIKSV 1253

Query:   455 EWEMIDXXXXXXXXXXXXXXXXXXXXXXXXKDERDS----LRQERDAMRDQHKRDVDSLN 510
             E E +                          ++++S    L++E + ++++       L 
Sbjct:  1254 ESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELK 1313

Query:   511 REREEFMN-KMVHEHSEW-FTKIQQERADFLLGIEMQKRDLENCIXXXXXXXXXXXXXXX 568
              + E+  N     E SE   +++++  ++     E Q   L+N I               
Sbjct:  1314 IQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLN 1373

Query:   569 XXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 628
                        ++I++          +  L+ K +D  R E+       D    E  N+I
Sbjct:  1374 EGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTI 1433

Query:   629 EELMVXXXXXXXXXXXXHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 688
             + L                D + +  E +  + LE LK   + +  ++  ++++E   KK
Sbjct:  1434 KSLQ--DEILSYKDKITRNDEKLLSIERDNKRDLESLK---EQLRAAQESKAKVEEGLKK 1488

Query:   689 ISAKRHLNQQTSLAHADLGSDQ----KFDVTNNGDRFNTPSVQKTASASPPSLARFSWIK 744
                   L +++S   A+L   +    K + T   +     S  +T   S   L +    K
Sbjct:  1489 ------LEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQS---K 1539

Query:   745 RFADLVFK---HSGENSVENDEEKSPTSDHEDASLTINSR---KRQPVRYSFGEPKVILE 798
             + A+   K   H   + +    E     +   + L I ++   + + V+      +  + 
Sbjct:  1540 KSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIR 1599

Query:   799 VPSE-NEVVKRTV-DLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNN 856
             + +E N V+K  + D+E E     A+  K +  E  +  +R + ++ + +D ++   Q +
Sbjct:  1600 INAEENTVLKSKLEDIERELKDKQAE-IKSNQEEKELLTSRLKELEQE-LDSTQQKAQKS 1657

Query:   857 KRRKQQE 863
             +  ++ E
Sbjct:  1658 EEERRAE 1664

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|G1K307 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 101/465 (21%), Positives = 198/465 (42%)

Query:     4 LILEKKELASKYEQIKASAEAAELLQKHDRASHLS-AIAEARKREESLKKT---LGVEKE 59
             ++ E+K ++SKY   +  AEA E  +K  +A  L+ A+ EA + +E L++T   L  E E
Sbjct:  1455 MLAEEKNISSKYADERDRAEA-EAREKETKALSLARALEEALEAKEELERTNKMLKAEME 1513

Query:    60 CIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAE-AKLHAAESLQAEAN 118
              + S +  V +   E  ++K   + +  E +  +E  + +   AE AKL    ++QA  +
Sbjct:  1514 DLVSSKDDVGKNVHELEKSKRTLEQQVEEMKTQLEELEDELQAAEDAKLRLEVNMQAMKS 1573

Query:   119 RYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLL 178
             ++ R  + + ++   +   L +++   + +             +   + ++  ++ E  +
Sbjct:  1574 QFERDLQARDEQNEEKRRQLLKQLHEHETELEDERKQRALAAAA-KKKLEVDVKDLESQV 1632

Query:   179 DAQTLLNEREDHILSKLQ-ELSRKEKELEASRANVEEKFKAL--NEEKS-NLDLTLVSLL 234
             D+     E     L KLQ ++   +++L+ +RA  EE F     NE+K+ NL+  L+ L 
Sbjct:  1633 DSANKAREEAIKQLRKLQAQMKDYQRDLDDARAAREEIFATARENEKKAKNLEAELIQL- 1691

Query:   235 KREEAVIER---EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 291
             + + A  ER   +A L+K+E       E LAS  S      + + +  L  + ++ E EL
Sbjct:  1692 QEDLAAAERARKQADLEKEEMA-----EELASANSGRTS--LQDEKRRLEARIAQLEEEL 1744

Query:   292 AIKYKLAEDEIEKKRRAWELRDL---DLGQREESLLEREH---DLEVQSRALVDKEKDLV 345
               ++   E   ++ R+A +  +    +L     +  + E+    LE Q++ L  K   L 
Sbjct:  1745 DEEHSNIETMSDRMRKAVQQAEQLNNELATERATAQKNENARQQLERQNKELRSK---LQ 1801

Query:   346 ERSHLLEEK-ENKLIAFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAK 404
             E    ++ K ++ + A E +                                   V   +
Sbjct:  1802 EMEGAVKSKFKSTIAALEAKIASLEEQLEQEAREKQAAAKTLRQKDKKLKDALLQVEDER 1861

Query:   405 DKLEAMKSEAGELSVLEIK-LKEELDVVRAQKLELMVETDKLQLE 448
              + E  K +A E   L +K LK +L+    +   +     KLQ E
Sbjct:  1862 KQAEQYKDQA-EKGNLRLKQLKRQLEEAEEESQRINANRRKLQRE 1905

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLH0	NMCP_ARATH	No assigned EC number	0.5030	0.8376	0.8416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1047
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-07
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-05
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	6e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	2e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	7e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	9e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.002
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.003
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.8 bits (166), Expect = 3e-11
 Identities = 122/657 (18%), Positives = 282/657 (42%), Gaps = 38/657 (5%)

Query: 6   LEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLE 65
           LE KE   + E   +         +++       + E +++ E+LK+ L   +  +  LE
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 66  KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE 125
           + + E+     E +    +   E   + E  +++ AE EA+L    +   E  R   S E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 126 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 185
            +L+ +  R +DL   +   +A+ EE + E+    + L + ++ L++  +RL + +  L 
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 186 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 245
           E ++ +    +ELS  E  L+          +A       +   L +L      V    A
Sbjct: 471 ELQEELQRLEKELSSLEARLDR--------LEAEQRASQGVRAVLEALESGLPGVYGPVA 522

Query: 246 SLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKK 305
            L K ++K   + E         +  ++ N E A +  +   E +      L  D I+  
Sbjct: 523 ELIKVKEKYETALEAALGNRLQAV--VVENEEVAKKAIEFLKENKAGRATFLPLDRIKPL 580

Query: 306 RRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 365
           R                L++ +   E   R ++           L+ +   +     ++ 
Sbjct: 581 RSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVL--------GDTLVVDDLEQARRLARKL 632

Query: 366 DLKKSLLQKEKEEVNI--IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 423
            +K  ++  + + V      +   ++  S   +K+++   +++L  ++++  +L      
Sbjct: 633 RIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKS 692

Query: 424 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 483
           LK EL  +     EL  + ++L+ +  + + E   ++E+ E+L+   E +  E     + 
Sbjct: 693 LKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL----EE 748

Query: 484 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 543
           L++E + L++  + + ++ +   ++L + +EE              + +Q   + L  +E
Sbjct: 749 LEEELEELQERLEELEEELESLEEALAKLKEEIEE---------LEEKRQALQEELEELE 799

Query: 544 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRL 603
            +  + E  ++    ELES  + RE+  +E +  E +      E+ E++L+++  E++ L
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEE-----IEELEEKLDELEEELEEL 854

Query: 604 DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
           + E  E+  + +  + E  EL + ++EL  ++++LEE+ + L ++  E++ E E+L+
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.1 bits (159), Expect = 2e-10
 Identities = 71/340 (20%), Positives = 142/340 (41%), Gaps = 10/340 (2%)

Query: 345 VERSHLLEEKENKLIAFEKEADLKKSLLQKEK--EEVNIIKSDLQKSLSSLDEKKKQVNC 402
            ER  L+EE        E++ + ++ L + E+  E +  +  +L+K L  L+ + ++   
Sbjct: 155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER 214

Query: 403 AKDKLEAMKSEAGELSVLEIK-LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 461
            ++    ++     L + ++K L++EL+ +  +   L  E ++LQ E  + E E E +  
Sbjct: 215 YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274

Query: 462 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 521
           + EELR+E E +  E       LK+E + L  E   +R++ +      N   E       
Sbjct: 275 ELEELREELEELQEE----LLELKEEIEELEGEISLLRERLEE---LENELEELEERLEE 327

Query: 522 HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 581
            +      K + E  + LL    Q        ++  EE  S+  E  +   E    E  +
Sbjct: 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Query: 582 ISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 641
           + +   +   ELE++  EI+ L+     ++   +    E  EL   +EEL  + ++L E+
Sbjct: 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE 447

Query: 642 RQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSR 681
            + L    EE++   + L++              E+    
Sbjct: 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLE 487

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.1 bits (159), Expect = 2e-10
 Identities = 119/681 (17%), Positives = 258/681 (37%), Gaps = 62/681 (9%)

Query: 10  ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE---ESLKKTLGVEKECIASLEK 66
           EL ++   ++ S    E   +          AE  K     E L++ +  E++    L +
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 67  AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 126
              E++ E  + +   +    E     +  +    + E        L+ E +R     +R
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417

Query: 127 KLQEVVAREDDLSR---RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL 183
             +E+      ++    +I   + + E+K  EI ++   L      L +  + L D +  
Sbjct: 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477

Query: 184 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD--LTLVSLLKR--EEA 239
            +  E  +    +EL+  E +  AS   V          K+++      V+ L    E  
Sbjct: 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537

Query: 240 VIEREASLQKKEQKLLVSQETLASKESNEIQK---------IIANHESALRVKQSEFEAE 290
               E +   +   ++V  + +A KE+ E+ K         +  N     R   S    +
Sbjct: 538 ATAIEVAAGNRLNNVVVEDDAVA-KEAIELLKRRKAGRATFLPLNKMRDERRDLSILSED 596

Query: 291 LAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 347
             I + +   E + K      +   D  + +     +E    L  + R +V  E +L E+
Sbjct: 597 GVIGFAVDLVEFDPKYEPAFKYVFGDTLVVED----IEAARRLMGKYR-MVTLEGELFEK 651

Query: 348 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 407
           S  +             +  + + LQ+ +E +  +K +L    S L   + +++    +L
Sbjct: 652 SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711

Query: 408 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 467
                + GE+     +L++E + ++ +  EL  +   L+ E    ++E + ++ + EEL 
Sbjct: 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771

Query: 468 KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 527
           ++                       +  +A+ D   R   S   E +  ++K+  E S  
Sbjct: 772 EDLH---------------------KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI 810

Query: 528 FTKIQQERADF--LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSL 585
             ++++       L   +         ++++R +L+   +  EK  E    +        
Sbjct: 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK-------- 862

Query: 586 KEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 645
           KE+ E+ELE++   ++ L+    ++  +R   + +  EL   IEEL  Q +K  ++   L
Sbjct: 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922

Query: 646 HADREEIQAESERLKKLEDLK 666
              + +++A  E L ++ED K
Sbjct: 923 ---KAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 64.7 bits (158), Expect = 2e-10
 Identities = 78/391 (19%), Positives = 166/391 (42%), Gaps = 47/391 (12%)

Query: 122  RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 181
            RS   +LQ +  R + L R      +  + + R I      LS       ++   +    
Sbjct: 670  RSEPAELQRLRERLEGLKRE----LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725

Query: 182  TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVI 241
              L + E+ +  +L+EL      LE    NV+ + K L      L+  L  L        
Sbjct: 726  EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL-------- 777

Query: 242  EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 301
              E +L   E +L  S+      E +++++ ++  E+ LR  + +       K +  E E
Sbjct: 778  --EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKE 834

Query: 302  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 361
            I++ +     + +DL ++ +S+ +   +L  +   L ++ ++L      LE +   L   
Sbjct: 835  IQELQE----QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890

Query: 362  EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 421
              E + +   L+++ EE+             +++K+K+++  K KLEA++ E  E+   +
Sbjct: 891  RDELEAQLRELERKIEELEA----------QIEKKRKRLSELKAKLEALEEELSEIEDPK 940

Query: 422  IKLKEE------LDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 475
             + +E       L+ V+A+   +  E   L+        E+E + ++ +EL+++  +   
Sbjct: 941  GEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK--- 997

Query: 476  ERVVVSKSLKDERDSLRQERDAMRDQHKRDV 506
                    L++ER ++  ER    ++ KR+V
Sbjct: 998  --------LEEERKAI-LERIEEYEKKKREV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 65.2 bits (158), Expect = 2e-10
 Identities = 144/633 (22%), Positives = 282/633 (44%), Gaps = 53/633 (8%)

Query: 7    EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 66
            +K + A K E+ K + EA +  ++  +A      AE  K++    K    E +  A   K
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349

Query: 67   AVHEIRAESAET----KVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 122
            A  E  A+ AE       AA+ K  EA+   + A+KK   AE K  A E+ +       +
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK---AEEKKKADEAKKKAEEDKKK 1406

Query: 123  SAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 182
            + E K      ++ D +++ A  K   +E +++    +++   +KK  + +       + 
Sbjct: 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466

Query: 183  LLNEREDHILSKLQELSRKE---KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEA 239
               ++ D    K +E  + +   K+ E ++   +E  KA   +K   +       K EEA
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK-----KAEEA 1521

Query: 240  VIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE 299
                EA   ++ +K   +++    K+++E++K       A  +K++E + +     K  E
Sbjct: 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKK-------AEELKKAEEKKKAEEAKKAEE 1574

Query: 300  DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK-- 357
            D+    R+A E +  +  + EE +   E + ++++      E+  ++   L + +E K  
Sbjct: 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634

Query: 358  --LIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK-----KQVNCAKDKLEAM 410
               +  ++  + KK+   K+ EE N IK+  +   +  D+KK     K     K   EA+
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694

Query: 411  KSEAGEL-SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKE 469
            K EA E     E+K KE  +  +A++L+   E +K++ E+AK EAE +   +K EE +K+
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED--KKKAEEAKKD 1752

Query: 470  AERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFT 529
             E    E+  ++   K+E     + R       + ++D  + +R   ++K + +  + F 
Sbjct: 1753 EE----EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA 1808

Query: 530  KIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR------------ 577
             I +   +  L I   K ++E+   K   + ++   E   AFE+ K              
Sbjct: 1809 NIIEGGKEGNLVINDSK-EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867

Query: 578  -EFQQISSLKEKAEKELEQVTLEIKRLDLERME 609
             +F +   LKE  E+E+E+   EI+++D + +E
Sbjct: 1868 ADFNKEKDLKEDDEEEIEE-ADEIEKIDKDDIE 1899

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 3e-10
 Identities = 80/364 (21%), Positives = 164/364 (45%), Gaps = 19/364 (5%)

Query: 304  KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 363
            + +R+   +  +L + EE L E E  LE     L   + +L     LLEE   +L   E+
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 364  EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 423
            + +  K  L   +EE+  ++S L++    L+E ++++   +++LE ++ E   L     K
Sbjct: 717  QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 424  LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 483
            LKEE++ +  ++  L  E ++L+ E  + E   + ++ + E L +  ER+  E     + 
Sbjct: 777  LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE----IEE 832

Query: 484  LKDERDSLRQERDAMRDQHKRDVDSLNREREEF--MNKMVHEHSEWFTKIQQERADFLLG 541
            L++E + L ++ D + ++ +     L   +EE   +     E  +   ++++E+ +    
Sbjct: 833  LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Query: 542  IEMQKRDLENC---IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTL 598
            +   + +L      IEK RE LE    + E+   E    E +     ++  E ELE+   
Sbjct: 893  LRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIE 952

Query: 599  EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 658
             ++        +N+         A      EE+  + ++L+ QR+ L   +E++    E 
Sbjct: 953  RLEEEIEALGPVNLR--------AI--EEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002

Query: 659  LKKL 662
            L K 
Sbjct: 1003 LDKE 1006

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 64.4 bits (156), Expect = 3e-10
 Identities = 132/686 (19%), Positives = 277/686 (40%), Gaps = 27/686 (3%)

Query: 33   RASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCM 92
            + +      EARK EE+ KK     K       KA    +AE  E + A D+K  E    
Sbjct: 1104 KKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDARKAE--EARKAEDAKRVEIARK 1159

Query: 93   VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 152
             E+A+K    AE    A ++ +AEA R  ++ E +  E + + +D  +  A+ KA+ E K
Sbjct: 1160 AEDARK----AEEARKAEDAKKAEAAR--KAEEVRKAEELRKAEDARKAEAARKAEEERK 1213

Query: 153  EREIIR-ERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 211
              E  + E    ++  K  ++  +   +A+    ER +  + K +E          +   
Sbjct: 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 212  VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 271
             EE  KA   +K+          K EE   ++    +KK ++   + E     E  + + 
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1331

Query: 272  IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 331
              A  ++    K +E     A       +  E+K  A E +  +  ++ ++  ++  + +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391

Query: 332  VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 391
                A    E+D  +   L +    K    +K  + KK   +K+K +    K++  K   
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAK----KKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447

Query: 392  SL----DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 447
                  +E KK     K   EA K++  +    E K  +E      +  +   E  K   
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507

Query: 448  EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVD 507
             K K +   +  + K+ +  K+AE             K + D L++  +  + + K+  +
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567

Query: 508  SLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER 567
               +  E+    M    +E   K ++ R + ++ +  +++ ++   E+ ++  E+  +  
Sbjct: 1568 EAKKAEED--KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK--AEEAKKAEEAKIKAE 1623

Query: 568  EKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 627
            E    EE+ ++ +Q+   + + +K+ E++    +   ++  E     +   ++  E   +
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683

Query: 628  IEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIA--VDYMAVSEMQRSRLEHS 685
             E+     + L+++ +      E  + E+E  KK E+LK A   + +   E ++   E  
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

Query: 686  QKKISAKRHLNQQTSLAHADLGSDQK 711
            +K   AK+   ++  +AH     ++K
Sbjct: 1744 KKAEEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 63.6 bits (155), Expect = 5e-10
 Identities = 122/596 (20%), Positives = 254/596 (42%), Gaps = 39/596 (6%)

Query: 92  MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ-EVVAREDDLSRRIASFKADCE 150
           + E  ++   EA+AK+   E   +E           L+ E+   +     +    + + E
Sbjct: 172 LSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE 231

Query: 151 EKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE----REDHILSKLQELSRKEKELE 206
           ++   +      L + K+ L++   RLL+ ++L  E    RE+ +    + L   E+++E
Sbjct: 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 207 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLASK 264
                  E  +   E +    L L  L +  E +   E  L+K E+KL  L S+    ++
Sbjct: 292 RLEELEREIEELEEELEGLRAL-LEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350

Query: 265 ESNEIQKIIANHESALRVKQSEFEA------ELAIKYKLAEDEIEKKRRAWELRDLDLGQ 318
           E NE+ K++      L  +  E E       E   + + A  E++++         ++ +
Sbjct: 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQE 410

Query: 319 REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK-EKE 377
             E L +   +LE +   L ++ K L E+ + LE KE  +       +      Q+  +E
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 378 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE--ELDVVRAQK 435
               +    +  L  L+E+  +     +  E ++    EL  LE +L E  EL+    ++
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530

Query: 436 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQER 495
           LE  +E  +  LE+ +   E   + + +EELR+  +R+        + LK+  + LR  R
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL--------QELKELLEELRLLR 582

Query: 496 DAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG-----IEMQKRDLE 550
               +  +       RER + + K + E  E  +++++      L      +E  + +LE
Sbjct: 583 TRKEELEE------LRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELE 636

Query: 551 NCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEI 610
           + +EK   + E     +    E E+  E +  + ++ + ++   +  LE K  +LE  ++
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVE-ELEAEIRRELQRIENEEQLEEKLEELE--QL 693

Query: 611 NMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 666
             + ++   E  EL   + E+    ++LE ++  L   ++E++   + L+ LE+L+
Sbjct: 694 EEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELR 749

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.8 bits (153), Expect = 8e-10
 Identities = 78/330 (23%), Positives = 157/330 (47%), Gaps = 8/330 (2%)

Query: 340 KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE----EVNIIKSDLQKSLSSLDE 395
            E++L     LLEE E +L   E++A+  +   + + E    E+ ++ + L++    L+E
Sbjct: 184 TEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEE 243

Query: 396 KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 455
            +++++  +++LE ++ E  E      +LK EL+ +R +  EL  E  +L+ E  + E E
Sbjct: 244 LEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 456 WEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 515
             ++ E+ EEL  E E +  ER+   K   +      +ER+ + ++ ++ +  L   +EE
Sbjct: 304 ISLLRERLEELENELEELE-ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362

Query: 516 FMNKMVHEHSEWFTKIQQERADF--LLGIEMQKRDLENCIEKRREELESSFREREKAFEE 573
              K+     E     +  R +   L     + R+    +++  E LE    ER     E
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER-LERLSERLE 421

Query: 574 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 633
           +   E +++ +  E+ + ELE++  E++ L+ +  E+    +  +RE AEL   ++ L  
Sbjct: 422 DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Query: 634 QRQKLEEQRQLLHADREEIQAESERLKKLE 663
           +   LE +   L A++   Q     L+ LE
Sbjct: 482 ELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 62.4 bits (152), Expect = 1e-09
 Identities = 119/541 (21%), Positives = 231/541 (42%), Gaps = 32/541 (5%)

Query: 148 DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA 207
           D E   + +    + +  R + L++  +R  + + L+ E+E  +   L+E++    EL  
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP- 217

Query: 208 SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 267
               + E+ + L +E   L+     + + E+ +   E S +K E+K+   +E +   +  
Sbjct: 218 ---ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK- 273

Query: 268 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE 327
              +I    E    +K+ + +AE  IK     +E   + R  E R   L +    + ER 
Sbjct: 274 ---EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330

Query: 328 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 387
            +LE +   L + +K L E    LEE E +   +E+    K+ L + +K    +    L+
Sbjct: 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE 390

Query: 388 KSLSSLDEKKKQVNCAKDKLEA----MKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 443
           K L  L++ K+++     K+ A    +K E  EL     +LK+          EL  E  
Sbjct: 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450

Query: 444 KLQLEK-----AKFEAEWEMIDEKREELRKEAERVAVERVVVSK--SLKDERDSLRQERD 496
           K  LE+      + E E + I+EK  +LRKE   +       S+   LK+  + L++  +
Sbjct: 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEE 510

Query: 497 AMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCI--- 553
            ++  +  +++    E E+   K++    E   K  ++  + L  ++ +  +LE  +   
Sbjct: 511 KLKKYNLEELEKKAEEYEKLKEKLIKLKGE--IKSLKKELEKLEELKKKLAELEKKLDEL 568

Query: 554 EKRREELESSFREREKAFEEEKMREFQQISSLKEK------AEKELEQVTLEIKRLDLER 607
           E+   EL     E      EE     +++     +      AEKELE+   E+K+L+ E 
Sbjct: 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628

Query: 608 MEINMDRQRRDREWAELNNSIEELMVQ--RQKLEEQRQLLHADREEIQAESERLKKLEDL 665
            +   +    ++   EL   +EEL  +   ++ EE R+       E+      L++LE  
Sbjct: 629 DKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR 688

Query: 666 K 666
           +
Sbjct: 689 R 689

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 6e-09
 Identities = 81/382 (21%), Positives = 167/382 (43%), Gaps = 22/382 (5%)

Query: 158  RERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFK 217
            R ++S   +K+ L++  E L + +  L + E+ + S   EL   E  LE  R  +EE  +
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 218  ALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 277
             L E K  L     + L+ E   ++      ++E + L  +     +   E+++ + + E
Sbjct: 717  QLEELKREL-----AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 278  SALRVKQSEFEAELAIKYKLAE--DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSR 335
             AL   + E E     +  L E  +E+E++    E R   L +  ESL +R   LE +  
Sbjct: 772  EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 336  ALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 395
             L ++ ++L E+   L+E E +L   EKE +  K  L++ + E   ++ +L++     +E
Sbjct: 832  ELEEEIEELEEK---LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888

Query: 396  KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 455
             ++++   + +L  +K    E+  L  +L+E    +   ++EL    ++L+      E  
Sbjct: 889  LEEELRELESELAELKE---EIEKLRERLEELEAKLERLEVELPELEEELE------EEY 939

Query: 456  WEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH---KRDVDSLNRE 512
             + ++ + E   +  E        V+    +E + + +  + ++ Q    +   + L   
Sbjct: 940  EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Query: 513  REEFMNKMVHEHSEWFTKIQQE 534
             EE   +      E F KI + 
Sbjct: 1000 IEELDKEKRERFKETFDKINEN 1021

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 76/358 (21%), Positives = 150/358 (41%), Gaps = 28/358 (7%)

Query: 124 AERKLQEVVAREDDLSRRIASFKADCE--EKEREIIRERQSLSDRKKILQQE--HERLLD 179
           AERKL+      + L   +   +   E  E++ E     Q L    + L+      +L +
Sbjct: 177 AERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKE 236

Query: 180 AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE--EKSNLDLTLVSLLKRE 237
            +  L E E+ +    +EL   ++ELE +   +EE    L E  E+       +  LK E
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296

Query: 238 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFE--AELAIKY 295
              +E E SL ++  + L ++     +   E+++ I   +  L  +++  E   +L  + 
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 296 KLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKE 355
           + A++E+E+K  A       L +  E L E                ++L E    L E  
Sbjct: 357 EEAKEELEEKLSA-------LLEELEELFEA-------------LREELAELEAELAEIR 396

Query: 356 NKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAG 415
           N+L   ++E +  +  L++  E +  +K +L++  + L+E + ++    ++LE ++ +  
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456

Query: 416 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 473
           EL     +L+ EL  ++ +   L  E   L+    + EAE       R  L      +
Sbjct: 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 2e-08
 Identities = 70/374 (18%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 257  SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDL 316
                   +E  E+++ +A  E+ L   + E +  L  + +  ED +E+ RR  E  +  L
Sbjct: 660  RSSLAQKRELKELEEELAELEAQLEKLEEELK-SLKNELRSLEDLLEELRRQLEELERQL 718

Query: 317  GQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEK 376
             + +        +L      L   +  L E    LEE E +L   ++  +  +  L+  +
Sbjct: 719  EELKR-------ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 377  EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 436
            E +  +K ++++        ++++   +++LE  +     L      L++  + +  +  
Sbjct: 772  EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 437  ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD 496
            EL  E ++L+ +  + E E E ++++ EEL++E E +  E+  +   LK+  +   +  +
Sbjct: 832  ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 497  AMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKR 556
             +R + + ++  L  E E+   ++         + + ER      +E++  +LE  +E+ 
Sbjct: 892  ELR-ELESELAELKEEIEKLRERLEE------LEAKLER------LEVELPELEEELEEE 938

Query: 557  REELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 616
             E+   +  ERE    EE++     ++    +A +E E+V    + L  +R ++   +++
Sbjct: 939  YEDTLETELEREIERLEEEIEALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEK 995

Query: 617  RDREWAELNNSIEE 630
                  EL+    E
Sbjct: 996  LLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 2e-08
 Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 14/318 (4%)

Query: 202 EKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK----EQKLLVS 257
           E++LE +  N+E     L E +  L+      L+R+    ER   L+ +    E  LL++
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEK-----LERQAEKAERYQELKAELRELELALLLA 232

Query: 258 QETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLG 317
           +     KE  E+++ ++  E  L   Q E E E   + +  + E+E+ R   E    +L 
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELE-EAEKEIEELKSELEELREELEELQEELL 291

Query: 318 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE---ADLKKSLLQK 374
           + +E + E E ++ +    L + E +L E    LEE + K+ A ++E    +     L++
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 375 EKEEVNIIKSDLQKSLSSLDEKKKQVNCA-KDKLEAMKSEAGELSVLEIKLKEELDVVRA 433
              E+   K +L++ LS+L E+ +++  A +++L  +++E  E+     +LK E++ +  
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 434 QKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 493
           +   L    + L+ E  + EAE E +  + EEL +E E +  +   +   LK+    L +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471

Query: 494 ERDAMRDQHKRDVDSLNR 511
            ++ ++   K       R
Sbjct: 472 LQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 58.6 bits (141), Expect = 2e-08
 Identities = 151/712 (21%), Positives = 289/712 (40%), Gaps = 54/712 (7%)

Query: 8    KKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKA 67
            K E A K E+ K  AE A   ++  +A       EARK E++ +  +  + E     E  
Sbjct: 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE-- 1167

Query: 68   VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK 127
                     E + A D+K AEA    E  +K    AE    A ++ +AEA R     ERK
Sbjct: 1168 ---------EARKAEDAKKAEAARKAEEVRK----AEELRKAEDARKAEAARKAEE-ERK 1213

Query: 128  LQEVVARED----DLSRRIASFKADCEEKER-EIIRERQSLSDRKKILQQEHERLLDAQT 182
             +E    ED    +  ++    K D EE ++ E  R  + +   ++       R   A  
Sbjct: 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 183  LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 242
                R+   L K +E  + ++  +A      ++ K   EE    D       K+ E   +
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD----EAKKKAEEAKK 1329

Query: 243  REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 302
            +  + +KK ++   + E   ++      +  A  E A   ++ + EA+   K   A+ + 
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK--KADAAKKKA 1387

Query: 303  EKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 362
            E+K++A E +       E+     E      ++   D+ K   E     +E + K    +
Sbjct: 1388 EEKKKADEAKK---KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444

Query: 363  KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD---EKKKQVNCAKDKLEAMKSEAGELSV 419
            K  + KK   + +K E    K++  K         E+ K+ + AK K E  K +A E   
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504

Query: 420  LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAE-RVAVERV 478
                 K+  +  +A++ +   E  K +  K   EA+     +K +EL+K  E + A E+ 
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564

Query: 479  VVSKSLKDERD---SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQER 535
               ++ K E D   +LR+  +A + +  R  + +    EE   K          KI+ E 
Sbjct: 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624

Query: 536  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE-------- 587
                L    +++     ++K+  E +    E +KA EE K++  ++    +E        
Sbjct: 1625 ----LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Query: 588  -KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH 646
             KAE++ ++    +K+   E  +    +++   E  +     +     + K EE ++   
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK--- 1737

Query: 647  ADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQ 698
             + EE + ++E  KK E+ K  + ++   E +++     +K+   +  L+++
Sbjct: 1738 -EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 3e-08
 Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 21/323 (6%)

Query: 98  KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 157
           +++ E +A+L   E     A        ++L+E+      L   +   + + EE E+EI 
Sbjct: 213 ERYQELKAELRELELALLLAKLKE--LRKELEELEEELSRLEEELEELQEELEEAEKEIE 270

Query: 158 RERQSLSDRKKILQQEHERLLDAQTLLNERE---DHILSKLQELSRKEKELEASRANVEE 214
             +  L + ++ L++  E LL+ +  + E E     +  +L+EL  + +ELE     ++E
Sbjct: 271 ELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 215 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 274
           K +AL EE    +  L  L +    + E +  L++K   LL   E L      E+ ++ A
Sbjct: 331 KIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390

Query: 275 NHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS 334
                    +              + EIE      E     L   +E L E E +LE   
Sbjct: 391 ELAEIRNELEE------------LKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 335 RALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 394
             L +  ++L E    LEE  ++L   E+E    +  LQ+ ++E+    S L+  L  L+
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL----SSLEARLDRLE 494

Query: 395 EKKKQVNCAKDKLEAMKSEAGEL 417
            +++     +  LEA++S    +
Sbjct: 495 AEQRASQGVRAVLEALESGLPGV 517

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 57.5 bits (139), Expect = 4e-08
 Identities = 94/509 (18%), Positives = 204/509 (40%), Gaps = 15/509 (2%)

Query: 7   EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 66
              EL  + E++    +A  L  +      L    E  +  E L + L  + E +  LE+
Sbjct: 240 RLAELEEEKERL-EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELER 298

Query: 67  AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 126
            + E+  E    +   +    E    +++ +++  + E KL   ES   E         +
Sbjct: 299 EIEELEEELEGLRALLEEL-EELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK 357

Query: 127 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 186
            L+E +   ++    +        E+ +++    Q L +    L    E + +    L +
Sbjct: 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417

Query: 187 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 246
             + +  +L+EL  + K+LE     +E K   + E     +   V   +  E   +    
Sbjct: 418 ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLE 477

Query: 247 LQKKEQKLL---VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIE 303
           L + E + L   +S+E   ++   EI+++               E E A+K +L E   +
Sbjct: 478 LYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEK 537

Query: 304 KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE------EKENK 357
            +    EL +L    + + L E    LE + + L +  ++L       E      E+  +
Sbjct: 538 LENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597

Query: 358 LIAFEKEADLKKSLLQKEKEEVNII--KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAG 415
           L    KE + + S L++  + + +   +++L+++   L+ + +++N   +  E +++   
Sbjct: 598 LKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALE 657

Query: 416 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 475
           EL     +L+ E+     +        +KL+ E  + E E E + E+ EEL K+      
Sbjct: 658 ELEEKVEELEAEIRRELQRIENEEQLEEKLE-ELEQLEEELEQLREELEELLKKLGE-IE 715

Query: 476 ERVVVSKSLKDERDSLRQERDAMRDQHKR 504
           + +   +S K E + L++E + +    + 
Sbjct: 716 QLIEELESRKAELEELKKELEKLEKALEL 744

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 6e-08
 Identities = 87/378 (23%), Positives = 140/378 (37%), Gaps = 88/378 (23%)

Query: 288 EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 347
           +AE A +YK    E++ + R  EL  L    R E L E   +L+ + +   ++ ++L   
Sbjct: 208 QAEKAERYK----ELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAE 261

Query: 348 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 407
              LEEK  +L     E + +   LQKE   +    S L++    L E+   +    ++L
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 408 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 467
           EA   E         +L EEL  +  +  EL  E + L+ E  + EAE E ++ + EEL 
Sbjct: 322 EAQLEELESKL---DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 468 KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 527
           ++ E            L+ +   L  +  ++ ++ +R    L R                
Sbjct: 379 EQLET-----------LRSKVAQLELQIASLNNEIERLEARLER---------------- 411

Query: 528 FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 587
                                    +E RRE L+    E  K  EE +++E Q      E
Sbjct: 412 -------------------------LEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

Query: 588 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 647
           +  +EL+                            EL    E L   R++LEE  Q L A
Sbjct: 447 EELEELQ---------------------------EELERLEEALEELREELEEAEQALDA 479

Query: 648 DREEIQAESERLKKLEDL 665
              E+     RL  LE L
Sbjct: 480 AERELAQLQARLDSLERL 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 73/348 (20%), Positives = 149/348 (42%), Gaps = 20/348 (5%)

Query: 3   LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIA 62
           L  LE++    + +  K   E   L  +      L  + E R++ E L++ L   K  +A
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDL--LEELRRQLEELERQLEELKRELA 726

Query: 63  SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 122
           +LE+ + ++++   E     + +  E    +E  Q++  E E +L + E   A+      
Sbjct: 727 ALEEELEQLQSRLEEL----EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 123 SAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 182
             E K Q +    ++L   +   +   +  ERE+    +SL  R++ L+QE E L     
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALEREL----ESLEQRRERLEQEIEEL----- 833

Query: 183 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 242
              E  + +  KL EL  + +ELE     ++E+ + L  EK  L+  L  L + +E + E
Sbjct: 834 --EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 243 REASLQKKEQKL---LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE 299
               L+ +  +L   +        +   +++++           + E+E  L  + +   
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 300 DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 347
           + +E++  A    +L   +  E + ER  +L+ Q   L + ++ L+E 
Sbjct: 952 ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 1e-07
 Identities = 124/696 (17%), Positives = 270/696 (38%), Gaps = 57/696 (8%)

Query: 7   EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 66
           +K+ L  +   ++   E  E           S + E  +    L++ L   KE + SLE 
Sbjct: 303 QKQILRERLANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESLEA 358

Query: 67  AVHEIRAESAETKVAAD----------SKFAEARCMVENAQKKFAEAEAKLHAAESLQAE 116
            + E+ AE  E +   +          SK A+    + +   +    EA+L   E  +  
Sbjct: 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

Query: 117 ANRYHRSAERKLQ-----EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ 171
             +      +KL+     E+ A  ++L   +   + + E  E  +   R+ L + ++ L 
Sbjct: 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478

Query: 172 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRA-------------NVEEKFKA 218
                L   Q  L+  E  +   L+  S   K L  +++             +V+E ++A
Sbjct: 479 AAERELAQLQARLDSLER-LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEA 537

Query: 219 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL-------LVSQETLASKESNEIQK 271
             E      L  V +++   A  +  A L++ E           +    +   +   ++ 
Sbjct: 538 AIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596

Query: 272 IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDL- 330
           I      A  + + + +   A+ Y L    +        L      +    ++  + DL 
Sbjct: 597 IEGFLGVAKDLVKFDPKLRKALSYLLGGVLV-VDDLDNALELAKKLRPGYRIVTLDGDLV 655

Query: 331 ---EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 387
               V +         ++ER   +EE E K+   E++    +  L + ++E+  ++ +L+
Sbjct: 656 RPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715

Query: 388 KSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 447
           +    L+E  +Q++  +  L  +++E  +L     +L +EL  + A+  EL    ++ + 
Sbjct: 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775

Query: 448 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVD 507
           E A+ EAE        EEL  + E++  E   + ++L + R  L    +   +  +R   
Sbjct: 776 ELAEAEAE-------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828

Query: 508 SLNR-EREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRE 566
              R    E   + + E  E  ++  +  A  +  +E    +LE+ +E    E  S    
Sbjct: 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888

Query: 567 REKAFE--EEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR-RDREWAE 623
                   EE   E +++ S + +  +ELE++  ++ +L+L    + +     ++R   E
Sbjct: 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

Query: 624 LNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 659
            + ++EE      K+E+  +      + ++ + + L
Sbjct: 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 2e-07
 Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 29/306 (9%)

Query: 79  KVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDL 138
                 +  E +  ++ A+++  E  A+L   E    E        E +++E+      L
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 139 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQEL 198
           +  I+         E++     Q L +R   L+++ E L      L  + D +  +L EL
Sbjct: 294 ANEIS-------RLEQQK----QILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342

Query: 199 SRKEKELEASRANVEEKFKALNEEKSNLDLTLVSL------LKREEAVIEREASLQKKEQ 252
             K +EL+    ++E + + L  E   L+  L  L      L+ + A +E + +    E 
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 253 KLLVSQ-ETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWEL 311
           + L ++ E L  +     Q+I    +     +  E +AEL    +  E+  E+  R    
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER---- 458

Query: 312 RDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL 371
               L +  E L E    LE   +AL   E++L +    L+  E      E  ++  K+L
Sbjct: 459 ----LEEALEELREE---LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

Query: 372 LQKEKE 377
           L+ +  
Sbjct: 512 LKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 53.9 bits (130), Expect = 4e-07
 Identities = 115/533 (21%), Positives = 223/533 (41%), Gaps = 51/533 (9%)

Query: 7   EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 66
           E  EL  + E+ +   E A    + +    L    E R+  E+L+  +   +E IA  E+
Sbjct: 214 ELAELDEEIERYEEQREQARE-TRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272

Query: 67  AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 126
              E+  E  + +   +    E   ++  A    A+AEA                   E 
Sbjct: 273 EREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA------------------VEA 314

Query: 127 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 186
           + +E+  R+++L  R+   +   +    E    R+   D ++  ++  E   + ++ L E
Sbjct: 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374

Query: 187 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 246
             + +  + +E+   E+E+E  R    +    L   +  L+       +  E   E EA+
Sbjct: 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434

Query: 247 LQKKEQKLLVSQETLASKESNEIQKIIANHESA-----LRVKQSEFEAELAIKYKLAEDE 301
           L+   +++  ++  L + +  E  + +            R +  E EAEL    +   +E
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELE-DLEEEVEE 493

Query: 302 IEKK-RRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 360
           +E++  RA +L + +   R E L ER  DLE     + ++ + + E+    EE   +   
Sbjct: 494 VEERLERAEDLVEAE--DRIERLEERREDLE---ELIAERRETIEEKRERAEELRERAAE 548

Query: 361 FEKEADLKKSLLQK---EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 417
            E EA+ K+    +   E EE     ++L   L+ L E+ + +   +  L A+     E+
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI 608

Query: 418 SVLEIKL----------KEELDVVRAQKLELMVETD-----KLQLEKAKFEAEWEMIDEK 462
             L  K           +E L   R +K EL  E D     + + +K + E   E ++EK
Sbjct: 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668

Query: 463 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 515
            +ELR+E + +  E   V   L+ E + LR+ R+A+ ++ +  +++L  E EE
Sbjct: 669 LDELREERDDLQAEIGAVENELE-ELEELRERREALENRVEA-LEALYDEAEE 719

Length = 880

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 53.2 bits (129), Expect = 6e-07
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 44/198 (22%)

Query: 96  AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV--AREDDLSRRIASFKADCEEKE 153
           A+ K  EAE +   A+ +  EA +    AE   +E +  A+E+    R         E E
Sbjct: 29  AEAKIKEAEEE---AKRILEEAKK---EAEAIKKEALLEAKEEIHKLR--------NEFE 74

Query: 154 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 213
           +E+   R  L   +K L Q+ E L     LL +RE+ +  K +EL +K++ELE     +E
Sbjct: 75  KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134

Query: 214 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273
           E  +   +E     L  +S L  EEA   +E  L+K E++                    
Sbjct: 135 ELIEEQLQE-----LERISGLTAEEA---KEILLEKVEEE-------------------- 166

Query: 274 ANHESALRVKQSEFEAEL 291
           A HE+A+ +K+ E EA+ 
Sbjct: 167 ARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 7e-07
 Identities = 74/350 (21%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 126 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRER---QSLSDRKKILQQEHERLLDAQT 182
           RK+ + +A   +  R+      + EE E  I R          + + L++E E+    Q 
Sbjct: 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA 215

Query: 183 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 242
           LL E+ ++   +  EL ++++ LE  +  +E +  +L EE   L   +  L KR E + +
Sbjct: 216 LLKEKREY---EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272

Query: 243 REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 302
               L KK + L   ++    ++  E++  IA+ E ++  K+ E E +   +    E EI
Sbjct: 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-DAEERLAKLEAEI 331

Query: 303 EK-----------------KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 345
           +K                 +R        +L +  E L     +++ +     D+ KD  
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391

Query: 346 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 405
           E+   L+ + N+L   ++E D  +  LQ+  EE+  + + +    + ++E +++      
Sbjct: 392 EKLEKLKREINEL---KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

Query: 406 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 455
           +++  + +  +L+    K ++EL  ++ +   +  E  KLQ E A+ EA+
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 52.8 bits (127), Expect = 1e-06
 Identities = 94/579 (16%), Positives = 213/579 (36%), Gaps = 59/579 (10%)

Query: 114 QAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 173
           Q   NR  +       ++    D+L++ +++  A       E+    + L D+K   +  
Sbjct: 287 QEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSEL----ELLEDQKGAFEDA 342

Query: 174 HERLLDAQTLLN--EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 231
                D + L    ++   I S+L+E+  +   L     +V+ K++ L ++        +
Sbjct: 343 -----DIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDL 397

Query: 232 SLLKREEAVI---------EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA-LR 281
                  A I           E  LQ  E +L    E    + + E  ++         R
Sbjct: 398 EKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQR 457

Query: 282 VKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKE 341
           +  +    E   + ++ ++ +EK +   E  + ++ Q +  L +     +    AL   E
Sbjct: 458 LDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAE 517

Query: 342 KDLVERSHLLEEKENKLIA--------FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 393
           + L++    L+E E +L             EA   +  + K      + ++DL   L   
Sbjct: 518 RRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEG 577

Query: 394 DEKKK--QVNCAKDKLEAMKSEAGE------LSVLEIKLKEELDVVRAQKLELM---VET 442
            +      V+    +L+     A E      L   E  L+  +   +  + +L+    E 
Sbjct: 578 SDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAEL 637

Query: 443 DKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 502
           ++ +  +A+     +      + L+ E +     +  +  ++ + +     +   +  Q 
Sbjct: 638 EEQKRAEAEARTALKQARLDLQRLQNEQQS---LKDKLELAIAERKQQAETQLRQLDAQL 694

Query: 503 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 562
           K     L  +++ F+  +  +  E  T+   +       ++ Q   L   IE  R +   
Sbjct: 695 K----QLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQA-- 748

Query: 563 SFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWA 622
             + R K  +++  RE   +  +     KEL++   E++   +ER+ +     R  R + 
Sbjct: 749 --KARLKELKKQYDRELASL-DVDPNTVKELKRQIEELETT-IERIAVRRPEVREYRAF- 803

Query: 623 ELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 661
                ++E  + R  L E+R  L     E+++ +E L++
Sbjct: 804 -----MQETWLHRDSLREERPNLAIQLRELESSAEELQQ 837

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 3e-06
 Identities = 64/315 (20%), Positives = 133/315 (42%), Gaps = 25/315 (7%)

Query: 186 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSL----LKREEAVI 241
           E  + +   + E  ++ + L   R    E+++AL +EK   +   +      L+R++  I
Sbjct: 184 ENIERLDLIIDEKRQQLERLRRER-EKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242

Query: 242 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 301
           ER+ +  ++E + L  + +   K   EI++++   E   ++K    E +L +K K+ E E
Sbjct: 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKIGELE 300

Query: 302 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 361
            E            L +          D E +        K   E   LL E E      
Sbjct: 301 AEIAS---------LERSIAEKERELEDAEERLA------KLEAEIDKLLAEIEELEREI 345

Query: 362 EKEADLKKSL---LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 418
           E+E   +  L     + KEE+  ++++L++      E + ++   ++KLE +K E  EL 
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 419 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 478
               +L+EEL  +  +  +L      ++ +  + E E E    + ++   + E++A +  
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 479 VVSKSLKDERDSLRQ 493
              + L D ++   +
Sbjct: 466 KYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 3e-06
 Identities = 72/378 (19%), Positives = 151/378 (39%), Gaps = 46/378 (12%)

Query: 94   ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 153
             + Q +    E +L       ++A+R     E++++++   E+ L  R+   + D    E
Sbjct: 691  SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750

Query: 154  REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL-SKLQELSRKEKELEASRANV 212
            +EI   +  L + +  +++  E L   +  LN+ E  +  S++ E              +
Sbjct: 751  QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE--------------I 796

Query: 213  EEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKI 272
            + +   L EE S ++  L  + ++   +   +  L+K+ Q+L   +  L  +  +  ++I
Sbjct: 797  QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856

Query: 273  IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV 332
                   L  K+ E E EL  + + A  ++E +          LG  ++   E E  L  
Sbjct: 857  -----ENLNGKKEELEEELE-ELEAALRDLESR----------LGDLKKERDELEAQLRE 900

Query: 333  QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS 392
              R + + E  + ++   L E + KL A          L ++  E  +    D +     
Sbjct: 901  LERKIEELEAQIEKKRKRLSELKAKLEA----------LEEELSEIEDPKGEDEEIPEEE 950

Query: 393  LDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 452
            L  +  Q      ++E        +++L I   +E + V  +  EL  +  KL+ E+   
Sbjct: 951  LSLEDVQAEL--QRVEEEIRALEPVNMLAI---QEYEEVLKRLDELKEKRAKLEEERKAI 1005

Query: 453  EAEWEMIDEKREELRKEA 470
                E  ++K+ E+  EA
Sbjct: 1006 LERIEEYEKKKREVFMEA 1023

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 3e-06
 Identities = 70/338 (20%), Positives = 148/338 (43%), Gaps = 15/338 (4%)

Query: 22   AEAAELLQKHDRA-SHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKV 80
             E + L  +  R  + L  +++           +  E E +   E+ + E   E  E   
Sbjct: 688  RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747

Query: 81   AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS- 139
            + + +    +  ++  + +  E E  LH  E  +A  +   R +  ++ E+ A    L  
Sbjct: 748  SLEQEIENVKSELKELEARIEELEEDLHKLE--EALNDLEARLSHSRIPEIQAELSKLEE 805

Query: 140  --RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQE 197
               RI +   + E+K   +  E++ L    + LQ++   L +    + +  +++  K +E
Sbjct: 806  EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE 865

Query: 198  LSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVS 257
            L  + +ELEA+  ++E +   L +E+  L+  L  L ++ E   E EA ++KK ++L   
Sbjct: 866  LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE---ELEAQIEKKRKRLSEL 922

Query: 258  QETLASKESNEIQKIIANHESALRVKQSEFEAELAI-KYKLAEDEIEKKRRAWELRDLDL 316
            +  L + E       ++  E      +   E EL++   +     +E++ RA E  ++  
Sbjct: 923  KAKLEALEEE-----LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLA 977

Query: 317  GQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 354
             Q  E +L+R  +L+ +   L ++ K ++ER    E+K
Sbjct: 978  IQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 4e-06
 Identities = 74/392 (18%), Positives = 163/392 (41%), Gaps = 31/392 (7%)

Query: 185  NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD--LTLVSLLKREEAVIE 242
             +    IL + +E+   E+++E     + E  KAL E +  L+     +  L++E   + 
Sbjct: 666  AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 243  REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 302
            R+ S  +K+   L ++     +   ++ K +   E A   +  E   E   +   AE EI
Sbjct: 726  RQISALRKDLARLEAEVEQLEERIAQLSKELTELE-AEIEELEERLEEAEEELAEAEAEI 784

Query: 303  EKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 362
            E+        +  + Q +E L      L+     L    ++       LE  E ++ A E
Sbjct: 785  EE-------LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

Query: 363  KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 422
            +  +  +  +++  E++  + +++++    ++E + ++    ++  +++     L     
Sbjct: 838  RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 423  KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE----MIDEKREELRKEAERVAVERV 478
            +L EEL  + +++ EL  E ++L+ + A+ E   E     ID  +E L +E         
Sbjct: 898  ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL---- 953

Query: 479  VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 538
                   +E ++L  + +   ++ +R +  L  + +E     V+  +    +  +ER DF
Sbjct: 954  -------EEAEALENKIEDDEEEARRRLKRLENKIKELGP--VNLAAIEEYEELKERYDF 1004

Query: 539  LLG----IEMQKRDLENCIEKRREELESSFRE 566
            L      +   K  LE  IE+   E    F++
Sbjct: 1005 LTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 5e-06
 Identities = 86/426 (20%), Positives = 166/426 (38%), Gaps = 64/426 (15%)

Query: 235  KREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIK 294
            K   +++ER   +++ E+K+   +E +A  E              LR +  E E EL   
Sbjct: 667  KTNSSILERRREIEELEEKIEELEEKIAELEKALA---------ELRKELEELEEELE-- 715

Query: 295  YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 354
                  E+E+  R       DL + E  + + E  +   S+ L + E ++ E    LEE 
Sbjct: 716  --QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773

Query: 355  ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA 414
            E +L   E E +  ++ +++ KEE+  ++  L +  + L    ++    +++LE+++   
Sbjct: 774  EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 415  GELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 474
                     L+E+++ +      L  E ++L+    + E+E E +  +R  L +      
Sbjct: 834  AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA--- 890

Query: 475  VERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQE 534
                     L+ E + L +E   +  +       L RE EE   K+              
Sbjct: 891  --------LLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRL------- 931

Query: 535  RADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELE 594
                              +E R + L+    E      EE      +I   +E+A + L+
Sbjct: 932  ----------------EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975

Query: 595  QVTLEIKRL---DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREE 651
            ++  +IK L   +L  +E          E+ EL    + L  Q++ L E ++ L    EE
Sbjct: 976  RLENKIKELGPVNLAAIE----------EYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025

Query: 652  IQAESE 657
            I  E+ 
Sbjct: 1026 IDREAR 1031

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 50.0 bits (120), Expect = 6e-06
 Identities = 111/536 (20%), Positives = 222/536 (41%), Gaps = 63/536 (11%)

Query: 81  AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 140
             +S+ AE    +E  +++  +A      A+ +  E    H     +L+ + A  +DL  
Sbjct: 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEE----HEERREELETLEAEIEDLRE 265

Query: 141 RIASFKADCEEKEREIIRER-QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 199
            IA       E+ERE + E  + L +R + L++E + LL    L +   + + ++ +EL 
Sbjct: 266 TIAE-----TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320

Query: 200 RKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 259
            +++EL           +A NEE  +L         RE+A    E + + +E        
Sbjct: 321 DRDEELRDRLEECRVAAQAHNEEAESL---------REDADDLEERAEELRE-------- 363

Query: 260 TLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQR 319
                E+ E++  +     A+  ++ E E          E+EIE+ R  +    +DLG  
Sbjct: 364 -----EAAELESELEEAREAVEDRREEIEE--------LEEEIEELRERFGDAPVDLGNA 410

Query: 320 EESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF---EKEADLKKSLLQKEK 376
           E+ L E   + +       + E  L      +EE E  L A    E    ++ S   +  
Sbjct: 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETI 470

Query: 377 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 436
           EE      +L+  L  L+E+ ++V    ++ E +      +  LE + ++  +++  ++ 
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE 530

Query: 437 ELMVETDK---LQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDS 490
            +  + ++   L+   A+ EAE E   E   E  +EAE    E   ++     LK+  +S
Sbjct: 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590

Query: 491 LR--QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRD 548
           L   +   A     + +++ L  +RE               ++  ER + L     +KR+
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREAL------------AELNDERRERLAEKRERKRE 638

Query: 549 LENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLD 604
           LE   ++ R E     +ER + + E+   +  ++   ++  + E+  V  E++ L+
Sbjct: 639 LEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 50.4 bits (120), Expect = 6e-06
 Identities = 103/722 (14%), Positives = 247/722 (34%), Gaps = 27/722 (3%)

Query: 4   LILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 63
           L +E++   S+ ++ K       + +  + A  +  + E + +E  LK+      E    
Sbjct: 157 LEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL 216

Query: 64  LEKA--------VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 115
            EK           +    + E          + +  +E+++++  + E  L        
Sbjct: 217 KEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENK 276

Query: 116 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 175
           E  +  +  E +L+ +   E++L   +   +    + E ++    + L   +K L++E E
Sbjct: 277 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336

Query: 176 RLLDAQTLLNE----REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 231
            + + +  L E    RE     + Q    +EK  +     + +K        S   L   
Sbjct: 337 EIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 396

Query: 232 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 291
            L  + E   E +  L+  EQ+  + +E    +     +   +      ++ + + E E 
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456

Query: 292 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 351
                L +    KK          +   E+  L        ++     K ++ +     L
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLAL 516

Query: 352 EEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK 411
            +    L             +     +V I  + + +  +  DE  ++    +   E   
Sbjct: 517 IKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPL 576

Query: 412 SEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE---------WEMIDEK 462
                 + + +    +L +     LE+    +  QL KA  EA+           ++ + 
Sbjct: 577 PAR---TFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDT 633

Query: 463 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 522
                 E+ +     +    SL++      + + ++ +  K  +     + +       +
Sbjct: 634 ELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKN 693

Query: 523 EHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELE---SSFREREKAFEEEKMREF 579
           E      +I+++       ++  K + E  +  + +E +   +   +  +   +EK  E 
Sbjct: 694 EILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEE 753

Query: 580 QQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 639
           ++    KE+ E+E  +++L+ K L  E  +    +   ++E        E   ++ +  E
Sbjct: 754 EKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKE 813

Query: 640 EQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQT 699
           E   L        Q E  + ++LE+L + +      E          ++   K  L Q+ 
Sbjct: 814 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 873

Query: 700 SL 701
            L
Sbjct: 874 LL 875

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 1e-05
 Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 7/260 (2%)

Query: 7   EKKELASKYEQIKAS-AEAAELLQKHDR--ASHLSAIAEARKREESLKKTLGVEKECIAS 63
           E +EL  +  +++    E  E L++ ++      S + E R+  E L++ L   KE I  
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 64  LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 123
           LE  +  +R    E +   +         +E  ++K    + +L   E+L  E  +    
Sbjct: 300 LEGEISLLRERLEELENELEELEER----LEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 124 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL 183
            E   +E+  +   L   +        E+  E+  E   + +  + L++E E L +    
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 184 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 243
           L+ER + +  +L+EL  + +EL+     + E+ + L E+   L   L  L +    + E 
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 244 EASLQKKEQKLLVSQETLAS 263
              L+K+   L    + L +
Sbjct: 476 LQRLEKELSSLEARLDRLEA 495

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 119/601 (19%), Positives = 246/601 (40%), Gaps = 52/601 (8%)

Query: 153 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL------------------SK 194
           ERE  R R   +   +I++ + ER+ D +  +NE+ + +L                    
Sbjct: 88  EREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDA 147

Query: 195 LQELSRKEKE-----------LEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 243
             +   KE++            E     ++E  K    +   L+  L  LL+  E ++E 
Sbjct: 148 FLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEA 207

Query: 244 -EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 302
            E  L++ ++   + +E    +   EI+ +          K+   E +  +    + +  
Sbjct: 208 LEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELE 267

Query: 303 EKKRRAWELRDLD-----LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 357
             K R  ELR+L+     L ++ E L E E ++E     L      L E   LLE+ ++ 
Sbjct: 268 ALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327

Query: 358 LIAFEKEADLKKSL------LQKEKEEVNIIKSDLQKSLSS-LDEKKKQVNCAKDKLEAM 410
               EK  +  + L      L +EK E+  +  +  K L   L+E +K++  A ++L+ +
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387

Query: 411 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEA 470
           +    EL     +L   L+ ++ +  EL  E ++L+ E  + E E + ++E+  +L  + 
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447

Query: 471 ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFM--NKMVHEHSEWF 528
             +A       K     ++   +    + + ++ +++ L  E        ++  E  E  
Sbjct: 448 LMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELE 507

Query: 529 TKIQ---QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSL 585
            +++   +E  + L   E  K +LE  +EK    LE     +EK   ++   E +Q+   
Sbjct: 508 KELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDR 567

Query: 586 KEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 645
            ++ ++ LE++ L   R +        + + R +E  +    +EE + Q ++L +  +L 
Sbjct: 568 LQELKELLEELRLLRTRKEELE-----ELRERLKELKKKLKELEERLSQLEELLQSLELS 622

Query: 646 HADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHAD 705
            A+ E  +AE E   +LE L +  +   + +     LE   +++ A+     Q       
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682

Query: 706 L 706
           L
Sbjct: 683 L 683

Length = 908

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 49.3 bits (118), Expect = 1e-05
 Identities = 133/698 (19%), Positives = 257/698 (36%), Gaps = 81/698 (11%)

Query: 22  AEAAELLQKHDRASHLSAIAEARKREESLKKTLGVE-----KECIASLEKAVHEIRAESA 76
            +  +LL    R  HL     A +   + ++    E     ++ + +LE  + E R E  
Sbjct: 253 EDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELN 312

Query: 77  ETKVAADSKFAEARCMVENAQ--------KKFAEAEAKLHAAESLQAEANRYHRSAERKL 128
           +   AA++K A  R  +E  +            + +A L    S+++E        +   
Sbjct: 313 QELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALT 372

Query: 129 QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL-LNER 187
            +    +    R     K   E    +      ++ + K   +   E  L A    L ++
Sbjct: 373 GKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQ 432

Query: 188 EDHILSKLQELSRKEKELEASRANVEEK-FKALNEEKSNLDLTLVSLLKREEAVIEREAS 246
            +    +  E    E EL   R         A  EE   L++   +L K +E     E +
Sbjct: 433 LEAGKLEFNE-EEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQ---EQA 488

Query: 247 LQKKEQKLLVSQETLASKESNEIQKIIANHESALR-VKQSEFEAELAIKYK--------- 296
               EQ  L S+     K  +E  + +   E  L  ++Q+  E EL +  +         
Sbjct: 489 EANVEQ--LQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHFLR 546

Query: 297 ----LAEDEIEKKRRAWELRDLDL------GQREESLLEREHDLE-VQSRALVDKEKDLV 345
                 E+ I K      L   DL      G   ++L     DL+ +        E +L 
Sbjct: 547 NEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELR 606

Query: 346 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 405
           ER    EE     +A +K+A+ +      E EE        +++ +      KQ   A+ 
Sbjct: 607 ERLQQAEEALQSAVAKQKQAEEQLVQANAELEE-------QKRAEAEARTALKQ---ARL 656

Query: 406 KLEAMKSEAGELSV-LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 464
            L+ +++E   L   LE+ + E       Q  +L  +  +L  ++         ++  ++
Sbjct: 657 DLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQ------AFLEALKD 710

Query: 465 ELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER-EEFMNKMVHE 523
           + R+       +  VV   L ++   L    +A R Q K  +  L ++   E  +  V  
Sbjct: 711 DFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDP 770

Query: 524 HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRRE--ELESSFRER---EKAFEEEKMRE 578
                 +++++  +        +  +E    +R E  E  +  +E      +  EE+   
Sbjct: 771 --NTVKELKRQIEEL-------ETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNL 821

Query: 579 FQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 638
             Q+  L+  AE+  +++T  IK   L R ++  +R+  +++  +L+  +  L  + ++L
Sbjct: 822 AIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQL 881

Query: 639 EEQRQLLHADREEIQAE---SERLKKLEDLKIAVDYMA 673
            E    L       QAE   SERL +LE+ K     ++
Sbjct: 882 AE----LKEPANANQAEGSISERLDQLEEFKRKRKRLS 915

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.5 bits (116), Expect = 2e-05
 Identities = 62/362 (17%), Positives = 150/362 (41%), Gaps = 21/362 (5%)

Query: 41   AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKF 100
               R+R E LK+ L   +  +  +E  + E+  E ++    A  K  E    +E  +++ 
Sbjct: 677  QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGEIEKEIEQLEQEE 732

Query: 101  AEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRER 160
             + + +L   E   +   +   + + +L+E+ AR ++L   +   +    + E  +   R
Sbjct: 733  EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792

Query: 161  QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN 220
                     +Q E  +L +  + +  R   I  KL  L+ +++ LE     ++E+   L 
Sbjct: 793  I------PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846

Query: 221  EEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESAL 280
            E+  +++  + +L  ++E + E    L+   + L             +++K     E+ L
Sbjct: 847  EQIKSIEKEIENLNGKKEELEEELEELEAALRDL--------ESRLGDLKKERDELEAQL 898

Query: 281  RVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS--RALV 338
            R  + + E EL  + +     + + +   E  + +L + E+   E E   E +     + 
Sbjct: 899  RELERKIE-ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957

Query: 339  DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKK 398
             + + + E    LE      I   +E   +   L++++ ++   +  + + +   ++KK+
Sbjct: 958  AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

Query: 399  QV 400
            +V
Sbjct: 1018 EV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 47.9 bits (115), Expect = 2e-05
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 23/161 (14%)

Query: 274 ANHESALRVKQSEFEAELAIKYKL--AEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 331
           A  E+   +++++ EAE   K  L  A++EI K R  +E          + L ER ++L+
Sbjct: 36  AEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE----------KELRERRNELQ 85

Query: 332 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 391
              + L+ KE++L  +  LLE++E +L   EKE + K+  L+K++EE+  +  +  + L 
Sbjct: 86  KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145

Query: 392 SL-----DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEE 427
            +     +E K+ +      LE ++ EA   + + IK  EE
Sbjct: 146 RISGLTAEEAKEIL------LEKVEEEARHEAAVLIKEIEE 180

Length = 520

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 48.8 bits (116), Expect = 2e-05
 Identities = 97/672 (14%), Positives = 217/672 (32%), Gaps = 21/672 (3%)

Query: 7   EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 66
            ++E      + +   ++  L  +  +      + E+ K  + L+K L  EKE I  LEK
Sbjct: 284 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEK 343

Query: 67  AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 126
            + E+             K        E  +K   + E       + +   +    SA +
Sbjct: 344 ELKELEI-----------KREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392

Query: 127 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 186
             +E +  +++  +         E++E  +  E++      + L++  E      T   E
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452

Query: 187 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 246
             +    KL +   + K+ E      +        E   L   L    ++E    E  A 
Sbjct: 453 ELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAV 512

Query: 247 LQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKR 306
           L    +  +  +   A+    ++   +AN++    V  S              DE +K  
Sbjct: 513 LLALIKDGVGLRIISAAGRGGDLGVAVANYK----VAISVAVIVEVSAVADEVDERQKLV 568

Query: 307 RAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 363
           RA     L           L      + V           L + +   +E + +    E 
Sbjct: 569 RALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEG 628

Query: 364 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 423
                +     E  +          SL     +K ++  +  +L        EL      
Sbjct: 629 ILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAES 688

Query: 424 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 483
              + +++R Q+     E    +  K     + E++ +K +E + +            K 
Sbjct: 689 ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKE 748

Query: 484 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 543
            ++E +  R +++   ++            EE       +  E   +  + + + L  +E
Sbjct: 749 KEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALE 808

Query: 544 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEK---ELEQVTLEI 600
            + ++    +E+ +  +E   + +E+  EE  +   ++    K   E+     E++T E 
Sbjct: 809 EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 868

Query: 601 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
              +L   E  ++ Q+   E        +E   + ++  ++  LL     EI+       
Sbjct: 869 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEA 928

Query: 661 KLEDLKIAVDYM 672
            +     +    
Sbjct: 929 IILLKYESEPEE 940

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 48.0 bits (115), Expect = 2e-05
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 44/197 (22%)

Query: 96  AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV--AREDDLSRRIASFKADCEEKE 153
           A+KK   AE     A+ +  EA    + AE   +E +  A+E+    R         E E
Sbjct: 23  AEKKLGSAEEL---AKRIIEEA---KKEAETLKKEALLEAKEEVHKLR--------AELE 68

Query: 154 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 213
           RE+   R  L   ++ L Q  E L      L+++E+++  K +ELS KEK L+     +E
Sbjct: 69  RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128

Query: 214 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273
           E      EE     L  +S L +EEA   +E  L++ E++                    
Sbjct: 129 ELIAEQREE-----LERISGLTQEEA---KEILLEEVEEE-------------------- 160

Query: 274 ANHESALRVKQSEFEAE 290
           A HE+A  +K+ E EA+
Sbjct: 161 ARHEAAKLIKEIEEEAK 177

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 46.8 bits (112), Expect = 6e-05
 Identities = 47/304 (15%), Positives = 115/304 (37%), Gaps = 61/304 (20%)

Query: 316 LGQREESLLEREHDL-EVQSRALVDKEK-----DLVERSHLLEEKENKLIAFEKEADLKK 369
           L   ++ +LE  H+L  V    L ++        L      L E  +KL ++  + +  +
Sbjct: 14  LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLR 73

Query: 370 SLLQKEK--------EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 421
              +K          ++V      ++K +  L+E+  ++     +LE            +
Sbjct: 74  EEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD 133

Query: 422 IKLKEELD----------VVRAQKLELMVETDKLQLEKAKFEAEWEMI-----DEKREEL 466
           + L   L           V   +  EL +E+D   +E    +  +  +      E  +E+
Sbjct: 134 LDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEV 193

Query: 467 RKEAERVAVERVVVS--KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEH 524
            +E +++  ER+ +    +  +    +++E           ++ + +ERE  + ++    
Sbjct: 194 EEELKKLGFERLELEEEGTPSELIREIKEE-----------LEEIEKERESLLEELK--- 239

Query: 525 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAF------EEEKMRE 578
                ++ ++  + LL +          IE  R E  S F + +K F       E+++++
Sbjct: 240 -----ELAKKYLEELLALYE-----YLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKK 289

Query: 579 FQQI 582
            +++
Sbjct: 290 LKEL 293

Length = 646

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 9e-05
 Identities = 64/323 (19%), Positives = 131/323 (40%), Gaps = 41/323 (12%)

Query: 195 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL 254
           L EL R+ K LE  +A   E++K L  E   L+L L  +L+ EE   E E   ++ ++  
Sbjct: 195 LNELERQLKSLER-QAEKAERYKELKAELRELELAL-LVLRLEELREELEELQEELKE-- 250

Query: 255 LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDL 314
              +    + E  E+++ +      +   + E E      Y LA  EI +          
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN-EISRL--------- 300

Query: 315 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 374
                       E   ++    L + E+ L E    LEE E+KL   E   +L +  L++
Sbjct: 301 ------------EQQKQILRERLANLERQLEELEAQLEELESKLD--ELAEELAE--LEE 344

Query: 375 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQ 434
           + EE+      L+  L  L+ + ++    + +LE ++ +   L     +L+ ++  +  +
Sbjct: 345 KLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNE 401

Query: 435 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKD-ERDSLRQ 493
              L    ++L+  + + + E        EEL K+ E   ++ +       + E + L++
Sbjct: 402 IERLEARLERLEDRRERLQQE-------IEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 494 ERDAMRDQHKRDVDSLNREREEF 516
           E + + +  +   + L    +  
Sbjct: 455 ELERLEEALEELREELEEAEQAL 477

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 75/352 (21%), Positives = 148/352 (42%), Gaps = 53/352 (15%)

Query: 345 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAK 404
           VER  +++E     IA   E D KK   +K  EE+  ++ ++++    +DEK++Q+    
Sbjct: 153 VERRKIIDE-----IAGVAEFDRKK---EKALEELEEVEENIERLDLIIDEKRQQL---- 200

Query: 405 DKLEAMKSEAGELSVLEIKLKE-ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKR 463
           ++L   + +A     L  + +E E   +  +K  L  + + ++ + A  E E E + E+ 
Sbjct: 201 ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260

Query: 464 EELRKEAERVAVERVVVSKSLKDERD---------------SLRQERDAMRDQHKRDVDS 508
            EL K  E +      ++K +KD  +                +     ++ ++ +   D+
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 509 LNRER--EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRE 566
             R    E  ++K++ E  E   +I++ER         ++  L     + +EELE    E
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERK--------RRDKLTEEYAELKEELEDLRAE 372

Query: 567 REKAFEEEKMREFQQISSLKEKAEK----------ELEQVTLEIKRLDLERMEINMDRQR 616
            E   ++E      ++   +EK EK          EL+++  E++RL  E  ++N     
Sbjct: 373 LE-EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431

Query: 617 RDREWAELNNS----IEELMVQRQKLEEQRQLLHADREEIQAESERLKKLED 664
            + +  EL         E+  Q  KLE+    L    +E+    E   ++E 
Sbjct: 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 2e-04
 Identities = 68/357 (19%), Positives = 146/357 (40%), Gaps = 43/357 (12%)

Query: 299 EDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 358
             E EK  R   L   +  + E   L +E +   + +  ++++   +E    LE+   ++
Sbjct: 204 RREREKAERYQALLK-EKREYEGYELLKEKEALERQKEAIERQLASLEEE--LEKLTEEI 260

Query: 359 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS-LDEKKKQVNCAKDKLEAMKSEAGEL 417
              EK  +  + LL++  +++  +  + Q  +   + E + ++   +  +   + E  + 
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 418 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 477
                KL+ E+D + A+  EL  E ++ +  + K   E+  + E+ E+LR E E V  E 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE- 379

Query: 478 VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 537
                  +DE    R++ + +    KR+++ L RE +                      +
Sbjct: 380 ---FAETRDELKDYREKLEKL----KREINELKRELDRLQ-------------------E 413

Query: 538 FLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVT 597
            L  +  +  DL   I     ++     E+E    E K            K E +LEQ+ 
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK------------KQEWKLEQLA 461

Query: 598 LEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 654
            ++ + + E  ++  +  R ++E ++L   + E   Q +  EE+ +   A  E ++A
Sbjct: 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 2e-04
 Identities = 107/461 (23%), Positives = 195/461 (42%), Gaps = 40/461 (8%)

Query: 7   EKKELASKYEQIKASAEAAELLQ---KHDRASHLSAIAEARKREESLKKTLGVEKECIAS 63
           E+ +L ++     A AEA E  +   +         + E R   ++  +     +E    
Sbjct: 294 ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD 353

Query: 64  LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 123
           LE+   E+R E+AE     +S+  EAR  VE+ +++  E E ++        +A     +
Sbjct: 354 LEERAEELREEAAE----LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409

Query: 124 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ--QEHERLLDAQ 181
           AE  L+E+    D+L  R A  +A      RE + E ++L +  K  +  Q  E     +
Sbjct: 410 AEDFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGKCPECGQPVEGSPHVE 468

Query: 182 TLLNEREDHILSKLQELSRKEKELEASRANVEEKF---KALNEEKSNLDLTLVSLLKREE 238
           T+  +RE     +++EL  + ++LE     VEE+    + L E +  ++         EE
Sbjct: 469 TIEEDRE-----RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE 523

Query: 239 AVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA 298
            + ER  ++++K ++    +E  A  E+   +K  A  E+     +   E    +  KLA
Sbjct: 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA-EEAREEVAELNSKLA 582

Query: 299 E--DEIEKKRRAWELRDL--DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 354
           E  + IE   R   L     D     E L E+   L   +    ++  +  ER   LE +
Sbjct: 583 ELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642

Query: 355 ----------ENKLIAFEKEADLKKSLLQKEKE------EVNIIKSDLQKSLSSLDEKKK 398
                     E+K  A E    +++ L +  +E      E+  ++++L + L  L E+++
Sbjct: 643 FDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL-EELEELRERRE 701

Query: 399 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELM 439
            +    + LEA+  EA EL  +   L+ EL     + LE M
Sbjct: 702 ALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLERM 742

Length = 880

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 100/531 (18%), Positives = 185/531 (34%), Gaps = 43/531 (8%)

Query: 156 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 215
           +I+    L  ++   ++    L    + L E  +  L +  EL  + K LE      E +
Sbjct: 70  LIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENE 129

Query: 216 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIAN 275
                EE   L       L  E   ++ E   Q KE K  +S       + +E+Q    N
Sbjct: 130 AAEAEEEAKLLKDK----LDAESLKLQNEKEDQLKEAKESIS---RIKNDLSEMQCRAQN 182

Query: 276 HESALRVKQSEFEA-----ELAIKYKLAEDEIEKKRRAWELRDLDLGQR----EESLLER 326
            ++ L++ +SE E      E   K     ++  +   + +    D   +    EE L   
Sbjct: 183 ADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRY 242

Query: 327 EHDLEVQ----------SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL--LQK 374
           E D EV                +      E   L   KE+  +  E+  DL+  L   +K
Sbjct: 243 EQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEK 302

Query: 375 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL---EAMKSEAGELSVLEIKLKEELDVV 431
            +E++  ++ + +K  + L   K  +      L   + +      L   E++LKE+   +
Sbjct: 303 MREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSI 362

Query: 432 RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 491
            +   +L     +LQLE+ K  +E   + +K E L+    R+     +V+K     R  L
Sbjct: 363 SSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAIL 422

Query: 492 RQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 551
                 + +           E  E + + V  H           A     +   + D+  
Sbjct: 423 NSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHL----------AKMENQLSELEEDVG- 471

Query: 552 CIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEIN 611
             +K R     +  +  K       R    +         ++E +  E  RL  E+  + 
Sbjct: 472 -QQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLE 530

Query: 612 MDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL 662
           M  +    +     +  + L +      E  Q+     E +QAE E+LK+ 
Sbjct: 531 MKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTIEALQAECEKLKER 581

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.0 bits (106), Expect = 3e-04
 Identities = 85/636 (13%), Positives = 217/636 (34%), Gaps = 14/636 (2%)

Query: 5    ILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT-LGVEKECIAS 63
            + E++E   K E+ +      EL +  +         +    +++LK     +E +    
Sbjct: 414  LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSED 473

Query: 64   LEKAVHEIRAESAETKVAADSKFAEARCMVENAQ--KKFAEAEAKLHAAESLQAEANRYH 121
            L K    ++       +    K  EA      A+       A  K      + + A R  
Sbjct: 474  LLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGG 533

Query: 122  RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 181
                      VA    +   +++   + +E+++ +    +     +  +  +    L  +
Sbjct: 534  DLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLK 593

Query: 182  TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVI 241
            ++       I   L      +  LEA   +   K      + + L   L S   +E  + 
Sbjct: 594  SIAVL---EIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLR 650

Query: 242  EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 301
            +  +  +   +K  +        +    ++ +     +   K      +  IK K    +
Sbjct: 651  KGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIK 710

Query: 302  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 361
             E K+   E  +L   + +E+  +   +L++  + + +KE++  +     EE+E +    
Sbjct: 711  EELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL 770

Query: 362  EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 421
              +        +K ++     + +  K  +  +E +      K++ E ++ E   +   E
Sbjct: 771  SLKEKELAEEEEKTEKLKVEEEKEE-KLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 829

Query: 422  IKLKEELDVVRAQKLELMVETDKLQLEK---AKFEAEWEMIDEKREELRKEAERVAVERV 478
               +EEL+ +  +  E        + E     +   + E++ E   +  +  E+  ++  
Sbjct: 830  KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQ-KLKDE 888

Query: 479  VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF---MNKMVHEHSEWFTKIQQER 535
            + SK  K++ +    E ++ +D    + ++   ER      +        E     + + 
Sbjct: 889  LESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADE 948

Query: 536  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQ 595
             +     + ++ +    +   +EEL +        FEE++ R  +     +   E++ E 
Sbjct: 949  KEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKEL 1008

Query: 596  VTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 631
            +   I+       E        +R   ++   +E  
Sbjct: 1009 LREIIEETCQRFKEFLELFVSINRGLNKVFFYLELG 1044

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 5e-04
 Identities = 103/537 (19%), Positives = 211/537 (39%), Gaps = 75/537 (13%)

Query: 179 DAQTLLNEREDHILSKLQ-ELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKRE 237
           D +  L++ +  I  K + +L  +   LE+  A ++E+ +   E++     T     +  
Sbjct: 184 DQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVL 243

Query: 238 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKL 297
           E   ER   L+  E ++   +ET+A  E              +R  +   E         
Sbjct: 244 EEHEERREELETLEAEIEDLRETIAETERER-----EELAEEVRDLRERLEE-------- 290

Query: 298 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 357
            E+E +       L D D     E++  R  +LE +   L      L E     +    +
Sbjct: 291 LEEERDDLLAEAGLDDAD----AEAVEARREELEDRDEEL---RDRLEECRVAAQAHNEE 343

Query: 358 LIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 417
             +  ++AD  +   ++ +EE   ++S+L+++  ++++        ++++E ++ E  EL
Sbjct: 344 AESLREDADDLEERAEELREEAAELESELEEAREAVED-------RREEIEELEEEIEEL 396

Query: 418 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR---------- 467
                    +L        EL  E D+L+  +A+ EA      E+ EE            
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456

Query: 468 -----KEAERVAV--ERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 520
                + +  V    E     + L+ E + L +E + + ++ +R  D +  E        
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR------ 510

Query: 521 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 580
                    ++++ R D    +E    +    IE++RE  E   RER    E E   + +
Sbjct: 511 -------IERLEERRED----LEELIAERRETIEEKRERAEEL-RERAAELEAEAEEKRE 558

Query: 581 QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDR---EWAELNNSIEELMVQRQK 637
             +  +E+AE+  E    E+  L+ +  E+    +  +R     A + ++ +E+   R+K
Sbjct: 559 AAAEAEEEAEEARE----EVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREK 614

Query: 638 LEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHSQKKISAK 692
            E   +L    RE +  + ER ++LE      D   + E +  + R E   +++  K
Sbjct: 615 REALAELNDERRERLAEKRERKRELEA---EFDEARIEEAREDKERAEEYLEQVEEK 668

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 6e-04
 Identities = 43/206 (20%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 461 EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 520
           E + ELR+    + V R+   + L++E + L++E     ++ +     L  E EE + ++
Sbjct: 217 ELKAELRELELALLVLRL---EELREELEELQEELKEAEEELEELTAELQ-ELEEKLEEL 272

Query: 521 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 580
             E SE   +I++ + + L  +  +   LE   +  RE L +  R+ E+   +      +
Sbjct: 273 RLEVSELEEEIEELQKE-LYALANEISRLEQQKQILRERLANLERQLEELEAQ-----LE 326

Query: 581 QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEE 640
           ++ S  ++  +EL ++  +++ L  E   +  + +  + E  EL + +EEL    ++LE 
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLET 383

Query: 641 QRQLLHADREEIQAESERLKKLEDLK 666
            R  +     +I + +  +++LE   
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARL 409

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 43.5 bits (103), Expect = 7e-04
 Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 26/214 (12%)

Query: 315 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 374
            L  R   L E    LE + ++L +  K   + S  +EE   KL     E D +   L+ 
Sbjct: 75  GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLED 134

Query: 375 EKEEVNIIKS----------------DLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 418
             EE+  +                   L        E    V   +  L     EA  + 
Sbjct: 135 LLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVI 194

Query: 419 V---LEIKLKEELDVVRAQKLELM-VETDKLQLEKAKFEAEWE------MIDEKREELRK 468
           V       L +   ++     EL  V        +   E E         ++  R EL  
Sbjct: 195 VVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEA 254

Query: 469 EAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 502
            AE++A E + V + L+ E+          R ++
Sbjct: 255 LAEKIAEELLAVREILEIEKALGDVLSKLARTEY 288

Length = 660

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 9e-04
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 10/230 (4%)

Query: 38  SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 97
             I E + +   L+K L   +  IASLE  +  I       K+        AR  +   +
Sbjct: 52  KKIREQQDQRAKLEKQLKSLETEIASLEAQL--IETADDLKKLRKQIADLNAR--LNALE 107

Query: 98  KKFAEAEAKLHAAESLQAEANRYHRS---AERKLQEVVAREDDLSRRIASFKADCEEKER 154
            +  E   +L  AE L A   R  R+   A     E   R   L+    +      E+  
Sbjct: 108 VQEREQRRRL--AEQLAA-LQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERID 164

Query: 155 EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEE 214
            +    + L+  +  +  E   L    +    ++  +   L+E  +   +L +  +  ++
Sbjct: 165 ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224

Query: 215 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASK 264
           K + L   +S L   + S         E  A+ +    +   ++     +
Sbjct: 225 KLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274

Length = 420

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 74/312 (23%), Positives = 132/312 (42%), Gaps = 19/312 (6%)

Query: 6    LEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLE 65
            L ++E   K E+ K + EA        +A  L    E +K+ E LKK    EK+    L+
Sbjct: 1600 LYEEEKKMKAEEAKKAEEA------KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653

Query: 66   KAVHE--IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 123
            KA  E  I+A     K   D K AE     E  +KK AEA  K         E  +    
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713

Query: 124  AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL 183
             ++K +E+   E++   +    K + EE +++    ++   ++KKI   + E    A+ +
Sbjct: 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773

Query: 184  LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 243
              E+E  I  +L      ++E E  R  V++K K + +  +N    ++   K    VI  
Sbjct: 1774 RKEKEAVIEEEL------DEEDEKRRMEVDKKIKDIFDNFAN----IIEGGKEGNLVIND 1823

Query: 244  EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIE 303
               ++    K +   + +  +E++  +K   N  +    +    EA+   +  L ED+ E
Sbjct: 1824 SKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNN-ENGEDGNKEADFNKEKDLKEDDEE 1882

Query: 304  KKRRAWELRDLD 315
            +   A E+  +D
Sbjct: 1883 EIEEADEIEKID 1894

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)

Query: 545 QKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI---- 600
           ++R++E   E++ EELE    E EKA  E + +E +++    E+  KELE+++ +I    
Sbjct: 675 RRREIEEL-EEKIEELEEKIAELEKALAELR-KELEELEEELEQLRKELEELSRQISALR 732

Query: 601 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 660
           K L     E+    +R  +   EL     E+    ++LEE  + L     EI+    +++
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 661 KLEDLKIAVDYMAVSE------------MQRSRLEHSQKKISAKRHLNQQTSLAHADL 706
           +L++   A+                     R RLE  +++I+A     +       +L
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 42.5 bits (101), Expect = 0.001
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 92  MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR--------IA 143
           ++ + ++   E E K   AE+L  EA +     E K +++   ED L           I 
Sbjct: 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580

Query: 144 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 203
             K + +    EII+E + L        + HE L++A+  LN+  +    K ++   K++
Sbjct: 581 EAKKEAD----EIIKELRQLQKGGYASVKAHE-LIEARKRLNKANEKKEKKKKKQKEKQE 635

Query: 204 ELEA 207
           EL+ 
Sbjct: 636 ELKV 639

Length = 782

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 65/331 (19%), Positives = 143/331 (43%), Gaps = 23/331 (6%)

Query: 290  ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 349
            EL+ +   A  +I +  +  E  + +  + +E L E E DL    + + + + +L E   
Sbjct: 706  ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765

Query: 350  LLEEKENKLIAFEKE-ADLKKSL-------LQKEKEEVNIIKSDLQKSLSSLDEKKKQVN 401
             +EE E  L   E+   DL+  L       +Q E  ++    S ++  L  +++K  ++ 
Sbjct: 766  RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825

Query: 402  CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 461
              K+ LE    E  EL    I LKE++  +  +   L  + ++L+ E  + EA    ++ 
Sbjct: 826  LEKEYLE---KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882

Query: 462  KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 521
            +  +L+KE + +  +     + L+ + + L  + +      KR   S  + + E + + +
Sbjct: 883  RLGDLKKERDELEAQL----RELERKIEELEAQIE-----KKRKRLSELKAKLEALEEEL 933

Query: 522  HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 581
             E  +   + ++   + L   ++Q       +E+    LE       + +EE   R   +
Sbjct: 934  SEIEDPKGEDEEIPEEELSLEDVQAELQR--VEEEIRALEPVNMLAIQEYEEVLKR-LDE 990

Query: 582  ISSLKEKAEKELEQVTLEIKRLDLERMEINM 612
            +   + K E+E + +   I+  + ++ E+ M
Sbjct: 991  LKEKRAKLEEERKAILERIEEYEKKKREVFM 1021

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 65/306 (21%), Positives = 108/306 (35%), Gaps = 66/306 (21%)

Query: 310 ELRDL----DLGQREESLLEREHDLEVQSRALVDKEKDLV-ERSHLLEEKENKLIAFEKE 364
           ++RDL       QR+     R    +   R L   E  +      L +      +   KE
Sbjct: 11  QIRDLNEDVSAFQRKFVNEVR--RCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKE 68

Query: 365 -ADLKKSL--LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 421
             DL++ +  L+ E +EV      L+K ++ L+E    ++  K  L+    E  ELS L+
Sbjct: 69  FLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLD 128

Query: 422 IKLKEELDVVRAQKLELMVETDKLQLEKA-KFEAE-WEMIDE--KREELRKEAERVAVER 477
           I  K    +  A+ L+L      +  EK   FE E W       ++ E+ +  E      
Sbjct: 129 IDFK---YLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTV 185

Query: 478 VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 537
            ++    K++ D +++  D+       DV     ER E ++K                  
Sbjct: 186 FIIFFVGKEDLDKVKKILDSFG-FELYDVPETEGERSELISK------------------ 226

Query: 538 FLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL---- 593
                          + KR EEL+    + E   E+              K   EL    
Sbjct: 227 ---------------VNKRIEELQRVLEQTESHLEKVL-----------VKIADELLAWD 260

Query: 594 EQVTLE 599
           EQV+ E
Sbjct: 261 EQVSKE 266

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 113/679 (16%), Positives = 226/679 (33%), Gaps = 68/679 (10%)

Query: 38  SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 97
           + I EA K   +  K L   +   A L +   E+RA+    +                A 
Sbjct: 195 NEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIR----------------AL 238

Query: 98  KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 157
           +   E   +L   + L+ E  R         +E+     D   R+   +A  ++ E EI 
Sbjct: 239 RDAVELWPRLQEWKQLEQELTRR-------REELATFPRDGVLRLEKREAHLQKTEAEID 291

Query: 158 RERQSLSDRKKILQQ---EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEE 214
                L++ K +  Q     E +L A   L+++   I +   EL+     +EA   + EE
Sbjct: 292 ALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEE 351

Query: 215 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 274
                 E      +  +  L+        +  L++ E       +     E    ++   
Sbjct: 352 AAGNGFE---AERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQ 408

Query: 275 NHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS 334
                    ++  EA    +   A  ++  K     L D      ++    RE       
Sbjct: 409 RLADDEEEVRAGDEARE--EKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLRE-KQTAFE 465

Query: 335 RALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 394
           R   +  K +  R   +      L+A  +        +     ++  + ++++ S  ++ 
Sbjct: 466 RQKTEHTKIIALRLAGML-----LVALSRLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVR 520

Query: 395 EKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL--DVVRAQKLELMVETDKLQLEKAKF 452
           E+K     A   +    +       L     + L    +R    +L    D+L+      
Sbjct: 521 EEK----AAVTDIPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEAL 576

Query: 453 EAEWEMIDEKREELRKEAERVAVE---RVVVSKSLKDERDSLRQERDAMRDQHKRDVD-- 507
           E  +   +    E + E E    E      +S   + +  S  ++      Q K ++   
Sbjct: 577 EGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKK-LMQKKAELTHQ 635

Query: 508 --SLNREREEFMNKMVHEHSE---------WFTKIQQERADFLLGIEMQKRDLENCIEKR 556
              L  E+  F  ++    +              +Q+ R    L  E  +  LE  IE R
Sbjct: 636 VARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIE-R 694

Query: 557 REELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 616
            +EL    R   +   +E +  F   ++  E A +E  +   ++ + +     +    + 
Sbjct: 695 TKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEG 754

Query: 617 RDREWAELNNSIEELMV---QRQKLEEQRQLLHADREEIQAE----SERLKKLEDLKIAV 669
              E  EL+ S+++  +   +   LEE    L  + EE+ A+    S ++ +LE      
Sbjct: 755 VAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVA 814

Query: 670 DYMAVSEMQRSRLEHSQKK 688
           +     E  +  LE   +K
Sbjct: 815 ELRQRRESLKEDLEEKARK 833

Length = 984

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 81/371 (21%), Positives = 169/371 (45%), Gaps = 24/371 (6%)

Query: 305  KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK----EKDLVERSHLLEEKENKLIA 360
              R   L         + L ER   L+ +  +L  +    E  L E S  L +   K+  
Sbjct: 661  APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
             EKE       L++E+E++     +L++ LSSL+++ + V   K +L+ +++   EL   
Sbjct: 721  IEKEI----EQLEQEEEKLKERLEELEEDLSSLEQEIENV---KSELKELEARIEELEED 773

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
              KL+E L+ + A+         ++Q E +K E E   I+ +  E+ ++  R+ +E+  +
Sbjct: 774  LHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831

Query: 481  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 540
             K +++ ++  R +        ++++++LN ++EE + + + E       ++    D   
Sbjct: 832  EKEIQELQE-QRIDLKEQIKSIEKEIENLNGKKEE-LEEELEELEAALRDLESRLGDLKK 889

Query: 541  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 600
              +  +  L   +E++ EELE+   ++ K   E K +       L E  + + E   +  
Sbjct: 890  ERDELEAQLRE-LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948

Query: 601  KRLDLERMEINMDR-QRRDREWAELNN----SIEELMVQRQKLEEQRQLLHADREEIQAE 655
            + L LE ++  + R +   R    +N       EE++ +  +L+E+R  L  +R+ I   
Sbjct: 949  EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL-- 1006

Query: 656  SERLKKLEDLK 666
             ER+++ E  K
Sbjct: 1007 -ERIEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 554 EKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD 613
           E+  EEL +  +E E+  EE    E  ++    E+ +KEL  +  EI RL+ ++  +   
Sbjct: 252 EEELEELTAELQELEEKLEE-LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

Query: 614 RQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMA 673
               +R+  EL   +EEL  +  +L E+   L    EE++ E E L+   +   A     
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370

Query: 674 VSEMQRSRLEHSQKKISAKRHLNQQTSLA 702
            S ++    +    +    +   Q  SL 
Sbjct: 371 ESRLEELEEQLETLRSKVAQLELQIASLN 399

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 45/321 (14%)

Query: 359 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 418
           I   K       +L +  +   +   DL++    L E         +KL+  +     LS
Sbjct: 11  IIGLK--SELDPVLAELHDFGLVHLEDLEEGEKGLKEL--------EKLKVAEVAQISLS 60

Query: 419 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 478
            L  ++ + L  V+     L      L  E  K EAE + ++E  +   K +  V     
Sbjct: 61  SLLSEVLDYLRSVK----GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELT- 115

Query: 479 VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 538
                  +ER S   E          D++ L  E E         + ++   + +     
Sbjct: 116 ----RKLEERLSELDEE-------LEDLEDLLEELEPL------AYLDFDLSLLRGLKFL 158

Query: 539 LLGIEMQKRDLENCIEKRREELESSFREREK-AFEEEKMREFQQISSLKEKAEKELEQVT 597
           L+ + + +R+       + E L     +      E  +      ++   E  +K  +   
Sbjct: 159 LVRLGLVRRE-------KLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKI-- 209

Query: 598 LEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL-EEQRQLLHADREEIQAES 656
             +  L  E  E+           +EL   I E+  + + L  E   L     EE+ A  
Sbjct: 210 --LNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVR 267

Query: 657 ERLKKLEDLKIAVDYMAVSEM 677
           E L+  + L   +  +A +E 
Sbjct: 268 EILEIEKALGDVLSKLARTEY 288

Length = 660

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 41.5 bits (97), Expect = 0.003
 Identities = 90/622 (14%), Positives = 193/622 (31%), Gaps = 67/622 (10%)

Query: 106 KLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 165
            L     L        +S   K + +  R   L+           E+++ + +E + L +
Sbjct: 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE 233

Query: 166 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSN 225
             +  QQ H  L   +    E+       L++L  + +EL A  A +EE  + +N     
Sbjct: 234 ALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQLRARIEELRAQEAVLEETQERIN----- 287

Query: 226 LDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQS 285
                                  +K   L    + +      +I++      + L+ K  
Sbjct: 288 ---------------------RARKAAPLAAHIKAVT-----QIEQQAQRIHTELQSKMR 321

Query: 286 EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 345
                L  +    + +   + +   L+ L     +E  +   H++    R +  ++  L 
Sbjct: 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTL---HSQEIHIRDAHEVATSIREISCQQHTL- 377

Query: 346 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNC-AK 404
              H+   ++ K    +K   L K L   ++E+  I                 +     +
Sbjct: 378 -TQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ 436

Query: 405 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 464
            +   + + A   +    KL++      AQ L+   +  + + +    E   + +   R 
Sbjct: 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL 496

Query: 465 ELRKEAERVAVERVV---VSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 521
              +E         +    ++   D    L +        + +   S      +  ++  
Sbjct: 497 LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556

Query: 522 HEHSEWFTKIQQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKM-REF 579
                   K Q +       I  Q  +     I   +          EK  E E M    
Sbjct: 557 Q---RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE 613

Query: 580 QQISSLKEKAEKELEQVTLE---------IKRLDLERMEINMDRQRRDREWAELNNSIEE 630
           Q     K + E++L+ V L          +K   L  +++ + ++R       +    +E
Sbjct: 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673

Query: 631 LMVQRQ----KLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQ 686
           L+  RQ    K++ +++ L   +E +      L++LE          + E  R   E   
Sbjct: 674 LLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET--------HIEEYDREFNEIEN 725

Query: 687 KKISAKRHLNQQTSLAHADLGS 708
              S    L  +    +  L  
Sbjct: 726 ASSSLGSDLAAREDALNQSLKE 747

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1047
PRK02224	880	chromosome segregation protein; Provisional	99.37
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.25
PRK02224	880	chromosome segregation protein; Provisional	99.12
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.91
PRK03918	880	chromosome segregation protein; Provisional	98.81
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.69
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.68
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.68
PRK03918	880	chromosome segregation protein; Provisional	98.52
PRK01156	895	chromosome segregation protein; Provisional	98.39
PRK01156	895	chromosome segregation protein; Provisional	98.3
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.29
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.27
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.03
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.84
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.8
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.78
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.64
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.56
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.49
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.43
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.29
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.28
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.8
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.73
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.7
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.65
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.24
PRK12704	520	phosphodiesterase; Provisional	96.19
PRK11637	428	AmiB activator; Provisional	96.16
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.13
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.75
PRK11637	428	AmiB activator; Provisional	95.73
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.69
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.54
PRK00106	535	hypothetical protein; Provisional	95.43
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.38
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.02
PRK12704	520	phosphodiesterase; Provisional	94.98
PHA02562	562	46 endonuclease subunit; Provisional	94.75
PRK00106	535	hypothetical protein; Provisional	94.73
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	94.72
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.34
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	94.22
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.94
PHA02562	562	46 endonuclease subunit; Provisional	93.43
KOG0964	1200	consensus Structural maintenance of chromosome pro	93.24
PRK04863	1486	mukB cell division protein MukB; Provisional	92.82
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	90.83
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	90.79
KOG0996	1293	consensus Structural maintenance of chromosome pro	89.57
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	89.55
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.45
PRK12705	508	hypothetical protein; Provisional	89.27
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	88.95
KOG0996	1293	consensus Structural maintenance of chromosome pro	87.77
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	87.33
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	86.73
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	86.19
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	86.1
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.0
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	83.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.47
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	83.02
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.24
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	80.29
PRK09039	343	hypothetical protein; Validated	80.2

>PRK02224 chromosome segregation protein; Provisional

Probab=99.37  E-value=3.9e-06  Score=100.67  Aligned_cols=18  Identities=33%  Similarity=0.329  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 001600          421 EIKLKEELDVVRAQKLEL  438 (1047)
Q Consensus       421 QseLKeEId~~R~Qke~L  438 (1047)
                      ..+++++|...|.+...|
T Consensus       622 ~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        622 NDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334555555555555444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.25  E-value=5.8e-05  Score=97.85  Aligned_cols=557  Identities=21%  Similarity=0.260  Sum_probs=308.6

Q ss_pred             hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHH
Q 001600           80 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE  159 (1047)
Q Consensus        80 ~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~q  159 (1047)
                      ...+..|.+...=+...+++...++.+...++...       .++...+.++|.--..++++...........++++...
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~-------~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~  976 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEV-------QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL  976 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445555555555555554444221       22333333444433444444444445555555556655


Q ss_pred             HhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhh-------hhhHhHHH
Q 001600          160 RQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS-------NLDLTLVS  232 (1047)
Q Consensus       160 Re~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~-------dl~~rl~~  232 (1047)
                      ++.+...-|.=...++++.+.+.-|...++.++.-.+...+++-.|++....++.+.....+-+.       ++...-..
T Consensus       977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen  977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQES 1056 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            65555555444456677777777777778888877777777777777777777766666555442       22222222


Q ss_pred             HhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhh--hHHHHHHHHH-----------------hHHHhhhhhhhHHHHHHH
Q 001600          233 LLKREEAVIEREASLQKKEQKLLVSQETLASKE--SNEIQKIIAN-----------------HESALRVKQSEFEAELAI  293 (1047)
Q Consensus       233 l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE--~~EIQKLlde-----------------h~a~L~~KK~EFElElE~  293 (1047)
                      +..-......+...|.++|-+|..++.++..-.  ....||.+.+                 ..+.++..++++..+++.
T Consensus      1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222334455666777777888777777765433  2223333322                 234555666666666666


Q ss_pred             HhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHHHHHHH----HhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001600          294 KYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERSHLLEEKENKLIAFEKEAD  366 (1047)
Q Consensus       294 krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ksk~LKEkEksLkaeEK~le  366 (1047)
                      ...-+++-......-.   .++|.++..+-..+.+.....+.++..+.    +.=.++.+-+..++.....+......++
T Consensus      1137 l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq 1216 (1930)
T KOG0161|consen 1137 LKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQ 1216 (1930)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665533333322   34555555554444444444444443333    2233455555556655556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001600          367 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ  446 (1047)
Q Consensus       367 ~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk  446 (1047)
                      .+-..|..+-..+...+.++++..-.++   .++.+.+.++.-+..-++++..-.++|..|+..+=.|.++....+..+-
T Consensus      1217 ~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~ 1293 (1930)
T KOG0161|consen 1217 REIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALS 1293 (1930)
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHH
Confidence            6666666666666677777777775555   4556666677777777777888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhh
Q 001600          447 LEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSE  526 (1047)
Q Consensus       447 ~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~  526 (1047)
                      ..+..|+.+-+.+   +.+|    ...+..+-++..-+.    ++..+.+.++.+|.-+.+....-.-. ..+-.-+=+.
T Consensus      1294 r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~ 1361 (1930)
T KOG0161|consen 1294 RDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQ 1361 (1930)
T ss_pred             HHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            8888888877766   3333    334444444444333    45556777777777766665421100 1112223344


Q ss_pred             HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH----------------------------------HHHHHHHHH
Q 001600          527 WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS----------------------------------FREREKAFE  572 (1047)
Q Consensus       527 ~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~----------------------------------L~EREk~FE  572 (1047)
                      |-.|++....+-+-+++.-|+.|...++.-++.+|-.                                  |..+-+.|+
T Consensus      1362 ~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1362 WKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555556655665555555544444322                                  222222332


Q ss_pred             H---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 001600          573 E---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADR  649 (1047)
Q Consensus       573 e---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ER  649 (1047)
                      .   +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|..+-.-+-.....+...+
T Consensus      1442 k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~ 1521 (1930)
T KOG0161|consen 1442 KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEK 1521 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   1122233444555555556555555666655555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHH
Q 001600          650 EEIQAESER  658 (1047)
Q Consensus       650 e~f~~~vE~  658 (1047)
                      ..+-..++.
T Consensus      1522 r~le~e~~e 1530 (1930)
T KOG0161|consen 1522 RRLEQEKEE 1530 (1930)
T ss_pred             HHHHHHHHH
Confidence            544444333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.12  E-value=9.9e-05  Score=88.90  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001600           43 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR  122 (1047)
Q Consensus        43 aeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s  122 (1047)
                      ...|.+=+.+.+|+..  +-.+...+.+.+..+..++-...+++......+..  .....+...|..+...++++....+
T Consensus       148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~  223 (880)
T PRK02224        148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE  223 (880)
T ss_pred             HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888999999833  35567778888888888888888888888777766  2245566667777777766666666


Q ss_pred             HHhhhhHHHhhhhhHH
Q 001600          123 SAERKLQEVVAREDDL  138 (1047)
Q Consensus       123 ~aeRKL~eVEaRE~~L  138 (1047)
                      .+...+..+...-..|
T Consensus       224 ~~~~~~~~l~~~l~~l  239 (880)
T PRK02224        224 RYEEQREQARETRDEA  239 (880)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6555555554444444

>TIGR00606 rad50 rad50

Probab=98.91  E-value=0.00094  Score=84.87  Aligned_cols=75  Identities=8%  Similarity=0.034  Sum_probs=52.5

Q ss_pred             HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001600           62 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED  136 (1047)
Q Consensus        62 adLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~  136 (1047)
                      ..|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~  471 (1311)
T TIGR00606       397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD  471 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence            446677777777777777777777777777777777777777777777766666666666666666665544444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.81  E-value=0.0012  Score=79.36  Aligned_cols=44  Identities=7%  Similarity=0.161  Sum_probs=24.8

Q ss_pred             hhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001600          145 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE  188 (1047)
Q Consensus       145 f~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqRE  188 (1047)
                      ...+....+..+..-...+.+|+..+.+.+.++...+.++.+.+
T Consensus       243 l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~  286 (880)
T PRK03918        243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK  286 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555566666666666666666665554433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.69  E-value=0.0029  Score=76.86  Aligned_cols=9  Identities=0%  Similarity=-0.005  Sum_probs=4.2

Q ss_pred             HHHHHHHHh
Q 001600          743 IKRFADLVF  751 (1047)
Q Consensus       743 lrKCTskIF  751 (1047)
                      |.+++..+|
T Consensus      1019 i~~~~~~~f 1027 (1179)
T TIGR02168      1019 LEEAIEEID 1027 (1179)
T ss_pred             HHHHHHHHH
Confidence            444444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=98.68  E-value=0.0046  Score=78.86  Aligned_cols=84  Identities=13%  Similarity=0.162  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001600          422 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ  501 (1047)
Q Consensus       422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~  501 (1047)
                      ..|+.+|+.+..+...+-.+..+++.+.+-...+|+.+-..+..+......-..+-..--.-+...-+.|..--..+++|
T Consensus       884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y  963 (1311)
T TIGR00606       884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK  963 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444433333222221111111112222334444445555555


Q ss_pred             HHhh
Q 001600          502 HKRD  505 (1047)
Q Consensus       502 ~kre  505 (1047)
                      +...
T Consensus       964 ~~~~  967 (1311)
T TIGR00606       964 IQDG  967 (1311)
T ss_pred             HHcC
Confidence            5544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.68  E-value=0.0031  Score=76.58  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=14.4

Q ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001600          612 MDRQRRDREWAELNNSIEELMVQRQKLEE  640 (1047)
Q Consensus       612 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~  640 (1047)
                      ..-..+..+..++...++.|...-.++.+
T Consensus       993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168       993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555555555554444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.52  E-value=0.0075  Score=72.85  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHhHHhhHHHH
Q 001600          424 LKEELDVVRAQKLELMVETDKLQ  446 (1047)
Q Consensus       424 LKeEId~~R~Qke~LlkEae~Lk  446 (1047)
                      +.++|..++.+...|.++...|.
T Consensus       457 ~~~ei~~l~~~~~~l~~~~~~l~  479 (880)
T PRK03918        457 YTAELKRIEKELKEIEEKERKLR  479 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=98.39  E-value=0.016  Score=70.72  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001600          588 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL  644 (1047)
Q Consensus       588 ~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~  644 (1047)
                      ....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus       671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~  727 (895)
T PRK01156        671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES  727 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            445566666667777777777777777777777777777666655444444444433

>PRK01156 chromosome segregation protein; Provisional

Probab=98.30  E-value=0.025  Score=69.14  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=33.2

Q ss_pred             HHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 001600          608 MEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL  662 (1047)
Q Consensus       608 ~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~c  662 (1047)
                      ..+......+..+...++.+|..|...-..|+++-..+..+...+..+++.++.+
T Consensus       677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~  731 (895)
T PRK01156        677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI  731 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445556666666677777777666666666555555555666665555554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.29  E-value=0.051  Score=71.91  Aligned_cols=41  Identities=24%  Similarity=0.205  Sum_probs=18.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001600          415 GELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE  455 (1047)
Q Consensus       415 ~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E  455 (1047)
                      +.+++....+..+|+.++.|.+.-...--.|-..-.+++.|
T Consensus      1290 ~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1290 SALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555444444433333333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.27  E-value=0.041  Score=70.14  Aligned_cols=207  Identities=14%  Similarity=0.275  Sum_probs=150.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001600          413 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR  492 (1047)
Q Consensus       413 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK  492 (1047)
                      ++.+|......|.+++..+..+...+.+..+.+..+.......-+.+...-+..+-+++........+..-......++.
T Consensus       594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999988888888888888888888887777777777666666677777777


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001600          493 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE  572 (1047)
Q Consensus       493 ~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FE  572 (1047)
                      ..+..-+..+...+..+..+-..|-    .++..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus       674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~  749 (1201)
T PF12128_consen  674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK  749 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777788877777777665553    455566666666666666666666666666666666666666665555554


Q ss_pred             H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001600          573 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE  623 (1047)
Q Consensus       573 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE  623 (1047)
                      +       ....+|..  |+- .-..++.+++++.-++.+++.-|..|..=+.=+...|..
T Consensus       750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~  810 (1201)
T PF12128_consen  750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK  810 (1201)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4       33344432  222 445567888889999999999888887766666666654

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.03  E-value=0.11  Score=66.03  Aligned_cols=75  Identities=19%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             eehhhhhhhHHHHHHHHHHHHH---HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh
Q 001600            6 LEKKELASKYEQIKASAEAAEL---LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKV   80 (1047)
Q Consensus         6 iEkKEwtSKyEeLkqa~~eae~---~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~   80 (1047)
                      .+-..+..+++++...+...+.   .+......+.-.+...+.+-+.++..+..--+++..+...+.++-.+.+.++-
T Consensus       232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~  309 (1163)
T COG1196         232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE  309 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555554442   22333333444445555555555555555555666555556666555555553

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.027  Score=68.50  Aligned_cols=217  Identities=24%  Similarity=0.338  Sum_probs=130.3

Q ss_pred             hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHHHHHHHHhhhhHH-HHhhhh
Q 001600          281 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL  351 (1047)
Q Consensus       281 ~~KK~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L  351 (1047)
                      |.|+-.|+   +|||.+|+-+++.-...+..++++|.+   -+.+|  ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei  395 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI  395 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566665   788888888888877777777666543   23333  3334555667777777666654332 223333


Q ss_pred             HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001600          352 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV  419 (1047)
Q Consensus       352 KEkEksLkaeEK~--le~e-------k~~L~~eKEel~~lK---~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lr  419 (1047)
                      ..+|-.-+-.||.  ++-+       .+|...+.+.|-.++   ..++--+..|..+++++..--....+-.        
T Consensus       396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~--------  467 (1118)
T KOG1029|consen  396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI--------  467 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence            3333322222221  1111       122223333333332   2344444455555555554444333222        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001600          420 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD  486 (1047)
Q Consensus       420 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~-------------~~  486 (1047)
                        ..-|++|+.++-|.+..+.|.+.|+++..              |++.-+.+++-||..|..-+             ++
T Consensus       468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s  531 (1118)
T KOG1029|consen  468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS  531 (1118)
T ss_pred             --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence              35689999999999999999999998754              34444455555555554322             56


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001600          487 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV  521 (1047)
Q Consensus       487 E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMe  521 (1047)
                      +.+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus       532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid  566 (1118)
T KOG1029|consen  532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID  566 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77788888999999999999999998888777776

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.80  E-value=0.21  Score=61.68  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001600          629 EELMVQRQKLEEQRQLLHADREEIQAESERLK  660 (1047)
Q Consensus       629 eeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK  660 (1047)
                      +++...-..|.+|++.+...+..|...|+.++
T Consensus       982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169       982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445566666666666666666666665

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.78  E-value=0.36  Score=63.79  Aligned_cols=415  Identities=17%  Similarity=0.220  Sum_probs=219.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHH
Q 001600           13 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCM   92 (1047)
Q Consensus        13 SKyEeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aL   92 (1047)
                      |+..++++.+-..+.+|.+....|=-...+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+.+++.+..-
T Consensus       926 s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e 1005 (1822)
T KOG4674|consen  926 SQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSRE 1005 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            56677888889999999999999988888888888887765544444456677777788888877778888888888888


Q ss_pred             HHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHH---HhchHHHHHH
Q 001600           93 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKI  169 (1047)
Q Consensus        93 v~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~q---Re~L~eweKk  169 (1047)
                      +.++..-...+....       -.+++..+.+-.          +|..++.+......-|+.++..-   .+.|.....-
T Consensus      1006 ~~sl~ne~~~~~~~~-------s~~~~~~~~~k~----------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 1006 ISSLQNELKSLLKAA-------SQANEQIEDLQN----------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREE 1068 (1822)
T ss_pred             hHHHHHHHHHHHHHH-------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776555444333       233333333333          23333444444444444443221   2334444444


Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH----HhhcHH---HHHHHHhhhhhhhhHhHH--HHhhhHHHH
Q 001600          170 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA----SRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAV  240 (1047)
Q Consensus       170 Lqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEe----ak~kie---~~~~~Lk~ke~dl~~rl~--~l~~rEee~  240 (1047)
                      +......+.+.....-++..-.-+..+-....++-|+.    ..+.|.   ..+..|...=+.+....+  .++.-..-.
T Consensus      1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~ 1148 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGL 1148 (1822)
T ss_pred             HHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccch
Confidence            44445555555444444443333333333333222222    222221   112222222222222211  111111110


Q ss_pred             HHHHHH--HHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHH
Q 001600          241 IEREAS--LQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAW  309 (1047)
Q Consensus       241 ~~~~~~--Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~---------eeEle~K~~~~  309 (1047)
                      ..+...  .--+|+++..-+-.+.-+|......    +-+.+.....++...|...|.++         +.+|-.++..|
T Consensus      1149 sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v 1224 (1822)
T KOG4674|consen 1149 SDLQNIVSFLRKEKEIAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV 1224 (1822)
T ss_pred             HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence            001100  1124444444444444444433222    22233334444444455555555         34455555555


Q ss_pred             H-hhhh------hhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHH-------H---
Q 001600          310 E-LRDL------DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL-------L---  372 (1047)
Q Consensus       310 E-~rEv------el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~-------L---  372 (1047)
                      . .+|-      +..+-.+++    +.|..+.+++.-.=.-|..-++.|+..=....|+=+.++.+...       |   
T Consensus      1225 Nll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1225 NLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred             HHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 2222      223333333    44444444444333333444444444333333333333333221       2   


Q ss_pred             --HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001600          373 --QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA  450 (1047)
Q Consensus       373 --~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe  450 (1047)
                        ..|+.++.+++.+|......+++....|.+-...          +.++|-++|...|..-..+..+.++...|+.-+-
T Consensus      1301 ~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~ 1370 (1822)
T KOG4674|consen 1301 YKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKT 1370 (1822)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2347778888888888877777666666555443          4455578888888888888889999999999999


Q ss_pred             HHHHHHhhhHHH
Q 001600          451 KFEAEWEMIDEK  462 (1047)
Q Consensus       451 kFE~EWE~LDEK  462 (1047)
                      +.+.-|.-.-++
T Consensus      1371 rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1371 RLAAALSEKNAQ 1382 (1822)
T ss_pred             HHHHHHHHHHHH
Confidence            999988876665

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.64  E-value=0.36  Score=59.96  Aligned_cols=15  Identities=13%  Similarity=0.009  Sum_probs=10.7

Q ss_pred             hHHHHHHHhhHHHHH
Q 001600          618 DREWAELNNSIEELM  632 (1047)
Q Consensus       618 e~e~aEm~kdIeeL~  632 (1047)
                      =.-|..++.-+....
T Consensus       742 ~~~~~~l~~~~~~~~  756 (908)
T COG0419         742 LELLEELREKLGKAG  756 (908)
T ss_pred             HHHHHHHHHHHhHHH
Confidence            355777888777775

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.56  E-value=0.55  Score=60.04  Aligned_cols=169  Identities=23%  Similarity=0.317  Sum_probs=98.8

Q ss_pred             HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001600           40 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR  119 (1047)
Q Consensus        40 LsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~R  119 (1047)
                      +.+.+++=+.|++---.- +|-.+|...++.++..+.-.+      +-.++.-...+.+....+++-+.+....+.++..
T Consensus       195 ~~el~~~l~~L~~q~~~a-~~y~~l~~e~~~~~~~~~~~~------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (1163)
T COG1196         195 LEELEKQLEKLERQAEKA-ERYQELKAELRELELALLLAK------LKELRKELEELEEELSRLEEELEELQEELEEAEK  267 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455545544433322 234456667777766665554      2233333444444455555555555556666666


Q ss_pred             chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhh---HH
Q 001600          120 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSK---LQ  196 (1047)
Q Consensus       120 k~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~---~~  196 (1047)
                      .-..+..+++++.+.-..++.+-+.+......++.++...++.+..-...+.+.+.++...+.-+-.+...+...   ..
T Consensus       268 ~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (1163)
T COG1196         268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLE  347 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            666677777777777777766666666677778888887777777777777777777666666666666666655   33


Q ss_pred             HHhHhHHHHHHHhhcHHHH
Q 001600          197 ELSRKEKELEASRANVEEK  215 (1047)
Q Consensus       197 ~l~~kEkeLEeak~kie~~  215 (1047)
                      .+......+.......+..
T Consensus       348 e~~~~~~~~~~~~~e~~~~  366 (1163)
T COG1196         348 ELEQLLAELEEAKEELEEK  366 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444433333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.49  E-value=0.55  Score=58.19  Aligned_cols=323  Identities=19%  Similarity=0.273  Sum_probs=191.8

Q ss_pred             hHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHhhhhhhhH-------HHHHHH
Q 001600          229 TLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAI  293 (1047)
Q Consensus       229 rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~a-----RE~---~EIQKLldeh~a~L~~KK~EF-------ElElE~  293 (1047)
                      ....+.-.|-.+..++..|+.+|++...+-+.|--     ++.   ..+|++|+.-    +++...|       |.|+..
T Consensus       181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~  256 (775)
T PF10174_consen  181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYR  256 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            33345555666777788888899888766443322     222   2468887764    4445555       444444


Q ss_pred             HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH
Q 001600          294 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ  373 (1047)
Q Consensus       294 krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~  373 (1047)
                      .+..++---..  +.-..++++.........|-.  ++.-.=.|..+.-.+.+...-|.-....-.....-|+.=+..|-
T Consensus       257 L~~~~~~~~~~--r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~  332 (775)
T PF10174_consen  257 LRSRGELSEAD--RDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR  332 (775)
T ss_pred             HHhcccccccc--hHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            43333211110  112222333333333333311  33333445566666666666666666666666777777788888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001600          374 KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE  453 (1047)
Q Consensus       374 ~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE  453 (1047)
                      +--.....|..|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus       333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd  412 (775)
T PF10174_consen  333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD  412 (775)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999887765544455666666666666666666555543322111


Q ss_pred             HHHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001600          454 AEWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV  521 (1047)
Q Consensus       454 ~EWE~LDEKR~eL~------------KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMe  521 (1047)
                         ..|++-++.|.            -.++.-..+++.+..-+...+++.-.++..--+.|++++..++..-++|-..+ 
T Consensus       413 ---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-  488 (775)
T PF10174_consen  413 ---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-  488 (775)
T ss_pred             ---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence               11222222222            33333334444444444444444444444444667777777777777777655 


Q ss_pred             hhhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001600          522 HEHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS  563 (1047)
Q Consensus       522 hErs~~~eKiq~Erad~l~d~Emqkre---LE~~i~~R~EEiE~~  563 (1047)
                      ||+..-+.-++.+-+.+.-+.+-+..+   |++.+++.++++++-
T Consensus       489 sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl  533 (775)
T PF10174_consen  489 SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL  533 (775)
T ss_pred             HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence            677777777777777776666555544   446666666666543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.43  E-value=0.5  Score=56.49  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=39.5

Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001600          618 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK  661 (1047)
Q Consensus       618 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~  661 (1047)
                      .=+.+|-++.|.+|+..=+-+++-.|+|..++-.++..|++|..
T Consensus       409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~  452 (546)
T PF07888_consen  409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ  452 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999998863

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.29  E-value=0.93  Score=56.49  Aligned_cols=65  Identities=18%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001600          408 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV  473 (1047)
Q Consensus       408 kitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I  473 (1047)
                      ....++...+..+..+|+...+.++.-. ....+.++++..-..+..-|..|...-..++......
T Consensus       555 ~~l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         555 QQLKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333344444455544444444333 2224444444444444555555555555555444444

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.28  E-value=5.9e-05  Score=92.17  Aligned_cols=302  Identities=23%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             HHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHH
Q 001600          277 ESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE  353 (1047)
Q Consensus       277 ~a~L~~KK~EFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKE  353 (1047)
                      +..|..+.+..+.+++..+..++++-++|...   +..-..+|..+-.+   -+.......+.|.+--+.|..++..+.+
T Consensus       259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~~~L~el~e  335 (859)
T PF01576_consen  259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLERKLQELQE  335 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888888888888776542   22333333333322   2333444455566666777777777777


Q ss_pred             HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001600          354 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDV  430 (1047)
Q Consensus       354 kEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra---~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~  430 (1047)
                      .-..+.+.--.|+.-+..|+.+-+.+..   +|++..+   .++...++++.....++.-          -..+..+.|.
T Consensus       336 ~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~~~~~e~d~  402 (859)
T PF01576_consen  336 QLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VEELQAERDA  402 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHH
Confidence            7777777777777778888877666554   4554443   5566666666544433322          1356667777


Q ss_pred             HHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001600          431 VRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN  510 (1047)
Q Consensus       431 ~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~  510 (1047)
                      .-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.++..++-+.
T Consensus       403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El~~~leE~E  481 (859)
T PF01576_consen  403 AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEELQEQLEEAE  481 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777888888888888888788888877777888887777666444433332 222222222221122222222221


Q ss_pred             hhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001600          511 REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAE  590 (1047)
Q Consensus       511 ~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~  590 (1047)
                                                +-+...|-.+.-|+..|+.-+-++++.|.+|+..|+..|..=...|-+|..-+.
T Consensus       482 --------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE  535 (859)
T PF01576_consen  482 --------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELE  535 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHH
Confidence                                      122244555667888888889999999999999999877654444444333332


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001600          591 KELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM  632 (1047)
Q Consensus       591 kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~  632 (1047)
                      .|           -+.|.++.-.|++++.+..+|.-.++..+
T Consensus       536 ~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n  566 (859)
T PF01576_consen  536 EE-----------RKERAEALREKKKLESDLNELEIQLDHAN  566 (859)
T ss_dssp             ------------------------------------------
T ss_pred             HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22           23344555555555555555544444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.80  E-value=1.9  Score=51.78  Aligned_cols=96  Identities=18%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001600          422 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ  501 (1047)
Q Consensus       422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~  501 (1047)
                      +.+-+|...+.+..+..-.++.+|+.++.+-+.   .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus       353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv  428 (546)
T PF07888_consen  353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV  428 (546)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            445555555554444444567778888877776   68899888777666776665443 57888888888776665555


Q ss_pred             HHhhhhhhhhhHHHHHHhhh
Q 001600          502 HKRDVDSLNREREEFMNKMV  521 (1047)
Q Consensus       502 ~krelEsL~~ekEsF~~kMe  521 (1047)
                      .+.+-|.|..++-+.|.-|.
T Consensus       429 ~qkEKEql~~EkQeL~~yi~  448 (546)
T PF07888_consen  429 AQKEKEQLQEEKQELLEYIE  448 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.73  E-value=3.1  Score=53.16  Aligned_cols=69  Identities=25%  Similarity=0.266  Sum_probs=40.6

Q ss_pred             HHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhHHh
Q 001600          599 EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKI  667 (1047)
Q Consensus       599 E~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~ckncg~  667 (1047)
                      +...++.+-.+|...-+..+..-+.+-+-=+++..+....+.-++.|-+.|..|--.+++|-.+++=.-
T Consensus       732 ~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~  800 (1074)
T KOG0250|consen  732 DISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK  800 (1074)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344555555666655555555544444444445555555566667777778777777776666554433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.70  E-value=0.79  Score=48.83  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001600          168 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD  227 (1047)
Q Consensus       168 KkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~  227 (1047)
                      -++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus        92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~  151 (237)
T PF00261_consen   92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK  151 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence            344444444444555555555555555555555555555555555544444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.65  E-value=1.2  Score=47.41  Aligned_cols=225  Identities=21%  Similarity=0.260  Sum_probs=125.6

Q ss_pred             hhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhh
Q 001600          107 LHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE  186 (1047)
Q Consensus       107 L~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNq  186 (1047)
                      +-.|......+......++.++..+++.-..|.|..-.+..+.+       .--+.|..-..+|.+.+.++-+..+.+..
T Consensus        10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le-------~~eerL~~~~~kL~~~e~~~de~er~~k~   82 (237)
T PF00261_consen   10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELE-------RAEERLEEATEKLEEAEKRADESERARKV   82 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444445555555555566555555444433       33355666677777777777777777777


Q ss_pred             hhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh
Q 001600          187 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES  266 (1047)
Q Consensus       187 REe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~  266 (1047)
                      =+.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-++..++.+...|.+|..+-..|-+=|-
T Consensus        83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen   83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            77777777888888888888887777776666655555555555555555555555555555555555555555543332


Q ss_pred             HHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHH
Q 001600          267 NEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVE  346 (1047)
Q Consensus       267 ~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~  346 (1047)
                      .+.+         .    .+=+-.++.+-+.|..-|..=..-++--|..+...|..+..-+-.|..--.+.+....+|+.
T Consensus       163 ~~~~---------~----~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  163 SEEK---------A----SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhh---------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111         1    11112222233334444444344444445555666666666666666666666666666665


Q ss_pred             Hhhhh
Q 001600          347 RSHLL  351 (1047)
Q Consensus       347 Ksk~L  351 (1047)
                      -+..|
T Consensus       230 ~l~el  234 (237)
T PF00261_consen  230 TLNEL  234 (237)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            55443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.24  E-value=0.0011  Score=81.32  Aligned_cols=522  Identities=21%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh---------------------HHHHH
Q 001600           83 DSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED---------------------DLSRR  141 (1047)
Q Consensus        83 esKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~---------------------~LrRe  141 (1047)
                      +.-+.+..+-++++.+--..+|.+....++.+++++.+..++++-+.++.+.-.                     .|.|.
T Consensus       158 ~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~  237 (859)
T PF01576_consen  158 EAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQRE  237 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566666666666666666666666666665555555555544444                     44444


Q ss_pred             HhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHh-
Q 001600          142 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-  220 (1047)
Q Consensus       142 rlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk-  220 (1047)
                      +.++.+..+.....+...=..-......|+..+..+...+..+..=.+...+-.+.|.....+|..|+++++....... 
T Consensus       238 k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~E  317 (859)
T PF01576_consen  238 KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTE  317 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHH
Confidence            4444444443333332221122222333444444443333333333344555566777888888888888888766633 


Q ss_pred             ---hhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHh---HHHhhhhhhhHHHHHHHH
Q 001600          221 ---EEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK  294 (1047)
Q Consensus       221 ---~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~k  294 (1047)
                         +-+-.+..+|..+...-+++......|++.   -.-|+.-+     ....--|+.+   .+.|+.|.+-|+..+..-
T Consensus       318 elEeaKKkL~~~L~el~e~le~~~~~~~~LeK~---k~rL~~El-----eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~  389 (859)
T PF01576_consen  318 ELEEAKKKLERKLQELQEQLEEANAKVSSLEKT---KKRLQGEL-----EDLTSELEKAQAAAAELEKKQRKFDKQLAEW  389 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence               333344444444444433333333333321   11111111     1111222222   346788888888888777


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhh-------hhHHHHhhhhHHHHhhhHHHHHHhHH
Q 001600          295 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKE-------KDLVERSHLLEEKENKLIAFEKEADL  367 (1047)
Q Consensus       295 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKE-------kdl~~Ksk~LKEkEksLkaeEK~le~  367 (1047)
                      +.-++...    ..++.-..+....+..+.+=.++|+.....+...+       .++..=...+.+-.+++..    |+.
T Consensus       390 k~~~~~~~----~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~e----Lek  461 (859)
T PF01576_consen  390 KAKVEELQ----AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHE----LEK  461 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHH----HHH
Confidence            66655332    22233334444444445444444444433333322       2222222233333333222    222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh------------hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001600          368 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE------------AMKSEAGELSVLEIKLKEELDVVRAQK  435 (1047)
Q Consensus       368 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk------------itkeER~E~lrLQseLKeEId~~R~Qk  435 (1047)
                      .+..|..++.++...=.+++-.+-..+...+.+.-+-+.++            -+++-|--|.+-=-.|..++|.=|..+
T Consensus       462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r  541 (859)
T PF01576_consen  462 AKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKER  541 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHH
Confidence            23344444433333333333222222222222221111111            111112212211122222223333333


Q ss_pred             HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----------HHhh
Q 001600          436 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ----------HKRD  505 (1047)
Q Consensus       436 e~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~----------~kre  505 (1047)
                      ..++..--+|..+..-.+.-|+...-=..++.|.++.+..+=.-+...+.    .-....++++.+          .+.+
T Consensus       542 ~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~le----e~~~~~~~~~~~~~~~e~r~~~l~~e  617 (859)
T PF01576_consen  542 AEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELE----EAQRAREELREQLAVSERRLRALQAE  617 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444554444444455544444333333222222    111222223222          2233


Q ss_pred             hhhhhhhHHHHHH---hhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001600          506 VDSLNREREEFMN---KMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI  582 (1047)
Q Consensus       506 lEsL~~ekEsF~~---kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~EL~~I  582 (1047)
                      ++.+....+..+-   .++.|+.++.+.+..=.++- .++.-+++-||..|.-=+.++|-...+-.-+.+.-        
T Consensus       618 lee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~-~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~--------  688 (859)
T PF01576_consen  618 LEELREALEQAERARKQAESELDELQERLNELTSQN-SSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKA--------  688 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            4444333333222   33445555555443322111 12334667777766655555554433332222221        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHH
Q 001600          583 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQK  637 (1047)
Q Consensus       583 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~K  637 (1047)
                          ..|...+..|..|+..-..-.+.+...|..|+.+..+|+-=|+++-....+
T Consensus       689 ----kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~  739 (859)
T PF01576_consen  689 ----KKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK  739 (859)
T ss_dssp             -------------------------------------------------------
T ss_pred             ----HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                123344555666666666677778888899999999999888888765543

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK12704 phosphodiesterase; Provisional

Probab=96.19  E-value=0.21  Score=59.12  Aligned_cols=77  Identities=25%  Similarity=0.325  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600          284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  363 (1047)
Q Consensus       284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK  363 (1047)
                      +.+++.|+...|..++.++..+       +.+|..+|..|.+|+..|+.+.+.|..++.+|..+-+.|..+++.|...++
T Consensus        59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~  131 (520)
T PRK12704         59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE  131 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555443       444555666677777777777777777777777776666666666665555


Q ss_pred             HhHH
Q 001600          364 EADL  367 (1047)
Q Consensus       364 ~le~  367 (1047)
                      +++.
T Consensus       132 ~~~~  135 (520)
T PRK12704        132 ELEE  135 (520)
T ss_pred             HHHH
Confidence            5543

>PRK11637 AmiB activator; Provisional

Probab=96.16  E-value=2.2  Score=48.90  Aligned_cols=46  Identities=9%  Similarity=0.096  Sum_probs=22.1

Q ss_pred             HHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001600          232 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE  277 (1047)
Q Consensus       232 ~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~  277 (1047)
                      .|...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus        90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~  135 (428)
T PRK11637         90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR  135 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445555555555555555555555554433333444444

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.13  E-value=6.5  Score=50.15  Aligned_cols=300  Identities=23%  Similarity=0.292  Sum_probs=178.1

Q ss_pred             HHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001600          139 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK  215 (1047)
Q Consensus       139 rRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie---~~  215 (1047)
                      |++.++.--|-+-+...|..-=+.+.++=..|.+..+.|..-|.+=++|      +.-+++.-.++|-++...++   ..
T Consensus       172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~  245 (1200)
T KOG0964|consen  172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED  245 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3455666677788888888888888888888888888888888776655      34456666667766666544   33


Q ss_pred             HHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHH
Q 001600          216 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA  292 (1047)
Q Consensus       216 ~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leE---KL~aRE~~EIQKLldeh~a~L~~KK~EFElElE  292 (1047)
                      +.+.-++-+++.   ..+..++.+.......+..-|..|..|-+   .+.+++..-+++.     +.|..+..+|--+++
T Consensus       246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k-----t~lel~~kdlq~~i~  317 (1200)
T KOG0964|consen  246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK-----TKLELKIKDLQDQIT  317 (1200)
T ss_pred             HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHhh
Confidence            344444433333   33445556666666666666665555533   4445555444433     334444444433333


Q ss_pred             HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHHHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001600          293 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA  360 (1047)
Q Consensus       293 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksLka  360 (1047)
                      --   |++.-..++.=-...+.++.+++..+   ..+...|..+...+..+..+..||-+|      ++.-+++++=|+.
T Consensus       318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~  397 (1200)
T KOG0964|consen  318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS  397 (1200)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence            21   11111111111111222222222222   122333344444444444444444433      3444667777776


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001600          361 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV  440 (1047)
Q Consensus       361 eEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~Llk  440 (1047)
                      +=..|   +.-+..-++..+.+.-|++-....+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus       398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR  474 (1200)
T KOG0964|consen  398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR  474 (1200)
T ss_pred             HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666   777888888888888888888888888777777777777777777788888888888888887666666767


Q ss_pred             hhHHHHHHHHHHHHH
Q 001600          441 ETDKLQLEKAKFEAE  455 (1047)
Q Consensus       441 Eae~Lk~eKekFE~E  455 (1047)
                      |.-.|+..-++.+-+
T Consensus       475 EE~~l~~~i~~~~~d  489 (1200)
T KOG0964|consen  475 EEKKLRSLIANLEED  489 (1200)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            766777666665543

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=95.75  E-value=0.44  Score=56.45  Aligned_cols=75  Identities=28%  Similarity=0.319  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600          284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  363 (1047)
Q Consensus       284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK  363 (1047)
                      +.+++.|+...|..++.+++.+       +.++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|....+
T Consensus        53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~  125 (514)
T TIGR03319        53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE  125 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555565555555444       444555566666666666666666666666666666666666665555555


Q ss_pred             Hh
Q 001600          364 EA  365 (1047)
Q Consensus       364 ~l  365 (1047)
                      ++
T Consensus       126 e~  127 (514)
T TIGR03319       126 EL  127 (514)
T ss_pred             HH
Confidence            44

>PRK11637 AmiB activator; Provisional

Probab=95.73  E-value=5.2  Score=45.91  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 001600          369 KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK  411 (1047)
Q Consensus       369 k~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lkitk  411 (1047)
                      -.++..++.++...+.+++..++.++..+......+..|...+
T Consensus       172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k  214 (428)
T PRK11637        172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQAR  214 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555566665555555555555555444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.69  E-value=2.3  Score=47.46  Aligned_cols=166  Identities=20%  Similarity=0.169  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001600          331 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM  410 (1047)
Q Consensus       331 e~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lkit  410 (1047)
                      =+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+......  +.
T Consensus       127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~  204 (325)
T PF08317_consen  127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE  204 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence            3444555556666666666666666655555555555555555555555555555555555555555544444333  22


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001600          411 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS  490 (1047)
Q Consensus       411 keER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~er  490 (1047)
                      .-+..++    ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.+
T Consensus       205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~  280 (325)
T PF08317_consen  205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR  280 (325)
T ss_pred             hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            2334444    346677777777888888889999999999999999999999999999999999999889999999999


Q ss_pred             hHHHHHHHHHHH
Q 001600          491 LRQERDAMRDQH  502 (1047)
Q Consensus       491 LK~Ek~~~r~~~  502 (1047)
                      ||..-+.++...
T Consensus       281 Lk~~~~~Le~~~  292 (325)
T PF08317_consen  281 LKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.54  E-value=4.5  Score=43.88  Aligned_cols=232  Identities=21%  Similarity=0.340  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001600          423 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR  499 (1047)
Q Consensus       423 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r  499 (1047)
                      .|...||.+-.++--|..+.+.|+.+...|..-|+..-..+..++.+...+...-.....   .+.+.-..|+.+.+-++
T Consensus        58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            344677777777777777777777788888888887777777776666555543333222   24456677888888888


Q ss_pred             HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001600          500 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR  577 (1047)
Q Consensus       500 ~~~krelEsL~~ekE-sF~~kMehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~  577 (1047)
                      ..|..++..|...-. .+...|..- ...+..-+..=|           ...+..+.+-+.++|..++.+-......-..
T Consensus       138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~  206 (312)
T PF00038_consen  138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK  206 (312)
T ss_dssp             HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence            888888888877553 222222210 122222233333           3444445555555555555544443333333


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001600          578 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES  656 (1047)
Q Consensus       578 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~f~~~v  656 (1047)
                      --..+.+    +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus       207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~  282 (312)
T PF00038_consen  207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL  282 (312)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence            2222222    233444444444444444444444455555555554433332 22233333344444444455555555


Q ss_pred             HHhhhhhhHHhHH
Q 001600          657 ERLKKLEDLKIAV  669 (1047)
Q Consensus       657 E~lK~ckncg~~~  669 (1047)
                      ..+..+-|-+...
T Consensus       283 ~ey~~Ll~~K~~L  295 (312)
T PF00038_consen  283 REYQELLDVKLAL  295 (312)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH
Confidence            5555555554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK00106 hypothetical protein; Provisional

Probab=95.43  E-value=1.2  Score=53.42  Aligned_cols=75  Identities=27%  Similarity=0.297  Sum_probs=38.8

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600          284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  363 (1047)
Q Consensus       284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK  363 (1047)
                      +.+++.|+...|..++.++...+..       +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus        74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~  146 (535)
T PRK00106         74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE  146 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555444433       444455555555555555555555555555555555555555544444


Q ss_pred             Hh
Q 001600          364 EA  365 (1047)
Q Consensus       364 ~l  365 (1047)
                      ++
T Consensus       147 ~~  148 (535)
T PRK00106        147 QV  148 (535)
T ss_pred             HH
Confidence            44

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.38  E-value=13  Score=48.27  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=46.5

Q ss_pred             hHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHH
Q 001600           38 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEA  105 (1047)
Q Consensus        38 ~ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~  105 (1047)
                      .+...++.+...++..+.--..=...|.....+.+.++..-+-++.+.++..+.-+..|+.+...-+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~  341 (1201)
T PF12128_consen  274 ADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYED  341 (1201)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666555556666777777777777777788888888888888888777666543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.02  E-value=6.5  Score=42.70  Aligned_cols=248  Identities=19%  Similarity=0.237  Sum_probs=123.3

Q ss_pred             hhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhc
Q 001600          132 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN  211 (1047)
Q Consensus       132 EaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~k  211 (1047)
                      ++--..||+..-....+....+-++..-+..+.++..++...                     .......+.++...++-
T Consensus        53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e---------------------~~~~~~le~el~~lrk~  111 (312)
T PF00038_consen   53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE---------------------LAERKDLEEELESLRKD  111 (312)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhhh
Confidence            444456777777777888888888888888888888777766                     44445556666666666


Q ss_pred             HHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHH-HHHHhHHHhhhhhhhHHHH
Q 001600          212 VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK-IIANHESALRVKQSEFEAE  290 (1047)
Q Consensus       212 ie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQK-Lldeh~a~L~~KK~EFElE  290 (1047)
                      ++.+..+..+-+..|.    .|.   ++++-+   -..-+.++..|...+...-.+++.. --.+-..+|..=+.+|+..
T Consensus       112 ld~~~~~r~~le~~i~----~L~---eEl~fl---~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~  181 (312)
T PF00038_consen  112 LDEETLARVDLENQIQ----SLK---EELEFL---KQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEI  181 (312)
T ss_dssp             HHHHHHHHHHHHHHHH----HHH---HHHHHH---HHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHhHHHHHHH----HHH---HHHHHH---HhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHH
Confidence            6655554433333222    221   122222   2334567777777665333333221 1122344455555667777


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhh---HHHHhhhhHHHHhhhHHHHHHhHH
Q 001600          291 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD---LVERSHLLEEKENKLIAFEKEADL  367 (1047)
Q Consensus       291 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd---l~~Ksk~LKEkEksLkaeEK~le~  367 (1047)
                      +...+..++.-...|+.++...          +..-..++..-...+.+.-..   |...+..|+.+-   .+.+..|..
T Consensus       182 ~~~~~~e~e~~y~~k~~~l~~~----------~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~---~~Le~~l~~  248 (312)
T PF00038_consen  182 AQKNREELEEWYQSKLEELRQQ----------SEKSSEELESAKEELKELRRQIQSLQAELESLRAKN---ASLERQLRE  248 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             Hhhhhhhhhhhccccccccccc----------ccccccccchhHhHHHHHHhhhhHhhhhhhccccch---hhhhhhHHH
Confidence            7777777777777776665432          111222222222222222222   222222222221   122222221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001600          368 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA  433 (1047)
Q Consensus       368 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~  433 (1047)
                      -...+..+.          ....+.+..-..++...+..+...-.|-.+++...+.|--||..||.
T Consensus       249 le~~~~~~~----------~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  249 LEQRLDEER----------EEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            122222222          22222333333344444455555566677888888999999999996

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK12704 phosphodiesterase; Provisional

Probab=94.98  E-value=0.33  Score=57.48  Aligned_cols=63  Identities=32%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001600          293 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL  358 (1047)
Q Consensus       293 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL  358 (1047)
                      ..+..++.++...+.+++   .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|
T Consensus        57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~L  119 (520)
T PRK12704         57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKEL  119 (520)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344456655555554   445555666666665555544444444444444444444333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.75  E-value=11  Score=43.93  Aligned_cols=93  Identities=19%  Similarity=0.296  Sum_probs=53.8

Q ss_pred             HhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001600          388 KSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR  467 (1047)
Q Consensus       388 K~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~  467 (1047)
                      ..++.++.++..+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-..+.
T Consensus       306 d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~  385 (562)
T PHA02562        306 DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ  385 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence            34555555566666666655555556666655556666666666666666666666666666666665444444444444


Q ss_pred             HHHHHHHHHHHHH
Q 001600          468 KEAERVAVERVVV  480 (1047)
Q Consensus       468 KEa~~I~eEre~l  480 (1047)
                      .++..+..++..+
T Consensus       386 ~~l~~~~~~~~~~  398 (562)
T PHA02562        386 DELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>PRK00106 hypothetical protein; Provisional

Probab=94.73  E-value=1.4  Score=52.82  Aligned_cols=13  Identities=23%  Similarity=0.393  Sum_probs=9.9

Q ss_pred             cccchhhhhhccC
Q 001600          829 SEDGIHAARKRRV  841 (1047)
Q Consensus       829 ~~~~~~agrkrr~  841 (1047)
                      .--++||||-=||
T Consensus       475 ~~yaiqaGREiRv  487 (535)
T PRK00106        475 NSFALQAGREIRI  487 (535)
T ss_pred             HHHHHhcCCeEEE
Confidence            3456899998886

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=94.72  E-value=0.42  Score=56.58  Aligned_cols=70  Identities=29%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001600          293 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA  365 (1047)
Q Consensus       293 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l  365 (1047)
                      ..+..++.++..++.+++   .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus        51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL  120 (514)
T TIGR03319        51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL  120 (514)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344456655555554   4455556666666666555555555555555554444444444444444433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.34  E-value=23  Score=45.89  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHH
Q 001600          425 KEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQ  501 (1047)
Q Consensus       425 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre---~lek~~~~E~erLK~Ek~~~r~~  501 (1047)
                      +-.|...........+.+..++..-++|+++|..++-++++..+|.+.....|-   ++..-...|.++|+.+-...-  
T Consensus       302 k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~--  379 (1141)
T KOG0018|consen  302 KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA--  379 (1141)
T ss_pred             hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh--
Confidence            334444444555566778889999999999999999999999999999887654   455556667888887655443  


Q ss_pred             HHhhhhhhhhhHHHHHHhhhh
Q 001600          502 HKRDVDSLNREREEFMNKMVH  522 (1047)
Q Consensus       502 ~krelEsL~~ekEsF~~kMeh  522 (1047)
                       ..+|+.|++...+=-+...|
T Consensus       380 -~~el~~ln~~~r~~~~~ld~  399 (1141)
T KOG0018|consen  380 -LEELEVLNRNMRSDQDTLDH  399 (1141)
T ss_pred             -HHHHHHHHHHHHHHHHHHhh
Confidence             66777776665554444443

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=94.22  E-value=1.1  Score=46.93  Aligned_cols=70  Identities=33%  Similarity=0.395  Sum_probs=45.7

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001600          290 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI  359 (1047)
Q Consensus       290 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk  359 (1047)
                      ++...|..++.++..++.++..+|..|..+|+.|..+...|+.+...|..++.+|..+...|+.++..+.
T Consensus        61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555777888888888888777777666666666666666666666665555555555555555544444

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.94  E-value=20  Score=43.64  Aligned_cols=311  Identities=17%  Similarity=0.187  Sum_probs=170.4

Q ss_pred             HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001600           64 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS  139 (1047)
Q Consensus        64 LEKAL~Emr----~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~Lr  139 (1047)
                      |+.-+..+|    .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+               
T Consensus        68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~---------------  132 (546)
T KOG0977|consen   68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA---------------  132 (546)
T ss_pred             HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence            455555555    4678899999999999999999998888888777766655555543332222               


Q ss_pred             HHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001600          140 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL  219 (1047)
Q Consensus       140 RerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~L  219 (1047)
                                   ++...--|+++.+|...|-+.+.-++-.++.+..=++.+...-+...++..+|..+++-++.+...-
T Consensus       133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr  199 (546)
T KOG0977|consen  133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR  199 (546)
T ss_pred             -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence                         1222234677788888888888888888877777777777777778888888888888887775443


Q ss_pred             hhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHhhhhhhhHHHHHHHHhhh
Q 001600          220 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL  297 (1047)
Q Consensus       220 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~-~EIQKLl-deh~a~L~~KK~EFElElE~krKs  297 (1047)
                      .+-...+..-+..|.-..          ..=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus       200 ~d~~n~~q~Lleel~f~~----------~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d  268 (546)
T KOG0977|consen  200 VDLQNRVQTLLEELAFLK----------RIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD  268 (546)
T ss_pred             HHHHhHHHHHHHHHHHHH----------hccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            333322222222221111          1122233322221 12221 1111110 011122222344566666667777


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001600          298 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE  377 (1047)
Q Consensus       298 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE  377 (1047)
                      ++.=.+.|+.++...=.--+          ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus       269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r  338 (546)
T KOG0977|consen  269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR  338 (546)
T ss_pred             HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence            77777777766653100000          00011111222222222222222333344555556666666777777766


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001600          378 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA  433 (1047)
Q Consensus       378 el~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~  433 (1047)
                      .....=.+.+...+.+-++..++.-          |...|+-.+.-|--||..||.
T Consensus       339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence            6655555555444444444444443          444455555788889999985

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.43  E-value=19  Score=41.93  Aligned_cols=98  Identities=27%  Similarity=0.278  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001600          368 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL  447 (1047)
Q Consensus       368 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~  447 (1047)
                      +...|.++...+.....+++.......+...++.+-...+....+.       -..+..++..++...+.|.....++..
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~  379 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE  379 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence            4444444444444444444444443333333333333333333322       233666777777777778777888888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Q 001600          448 EKAKFEAEWEMIDEKREELRKEAER  472 (1047)
Q Consensus       448 eKekFE~EWE~LDEKR~eL~KEa~~  472 (1047)
                      +....+.+|..+...++++.++...
T Consensus       380 ~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        380 ELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999876

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.24  E-value=34  Score=44.19  Aligned_cols=114  Identities=22%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             HHhHHhHHHHHHHHhhhhhHHHHHHHHH---hHHHhhhhhhhHHH--HHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 001600          248 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFEA--ELAIKYKLAE-----DEIEKKRRAWELRDLDLG  317 (1047)
Q Consensus       248 e~KEkeLl~leEKL~aRE~~EIQKLlde---h~a~L~~KK~EFEl--ElE~krKs~e-----eEle~K~~~~E~rEvel~  317 (1047)
                      +.+|.-|.+++|+-..+++  |+.||..   -=-.|+.-|-+++.  +|+..|++++     .|+..=+..++.-|.+..
T Consensus       170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~  247 (1200)
T KOG0964|consen  170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS  247 (1200)
T ss_pred             HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence            4566777788888887765  5555543   22333333433332  5667777764     333333344444444333


Q ss_pred             h---hHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600          318 Q---REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  363 (1047)
Q Consensus       318 h---~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK  363 (1047)
                      .   .=..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-
T Consensus       248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t  296 (1200)
T KOG0964|consen  248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET  296 (1200)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   222222222233334555555666677777777775555555543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.82  E-value=48  Score=44.73  Aligned_cols=145  Identities=19%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             HHhHHHHHHHHHhhhhhhhhhh-hhh-----hh---------------HHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001600           61 IASLEKAVHEIRAESAETKVAA-DSK-----FA---------------EARCMVENAQKKFAEAEAKLHAAESLQAEANR  119 (1047)
Q Consensus        61 VadLEKAL~Emr~E~AeiK~ta-esK-----La---------------EA~aLv~~~eeKs~EaE~KL~aAea~~AEa~R  119 (1047)
                      |.+|+.+|++.|--.-.||+|. +.-     +.               +-+.|++.|    +-.-.|+..|..++..+..
T Consensus       232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~  307 (1486)
T PRK04863        232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY  307 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            4566677777666666666543 111     11               222333333    2233566666666666666


Q ss_pred             chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHh
Q 001600          120 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS  199 (1047)
Q Consensus       120 k~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~  199 (1047)
                      +...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+.+-.+.+.+....+.
T Consensus       308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle  386 (1486)
T PRK04863        308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE  386 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677777777777777776665543322222 222223344444444555555555555555555555555555555


Q ss_pred             HhHHHHHHHhh
Q 001600          200 RKEKELEASRA  210 (1047)
Q Consensus       200 ~kEkeLEeak~  210 (1047)
                      ..+.++..++.
T Consensus       387 elEeeLeeLqe  397 (1486)
T PRK04863        387 AAEEEVDELKS  397 (1486)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=90.83  E-value=43  Score=40.13  Aligned_cols=147  Identities=22%  Similarity=0.281  Sum_probs=78.1

Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001600          357 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL  436 (1047)
Q Consensus       357 sLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke  436 (1047)
                      .|.+..++|+.-+..|.+-+.++..|...++.++.+++..+..+..-+++.......-       .-|..++..+|..-.
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe  354 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE  354 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence            3667777787778888888888888888888888888877777777777665555433       334444444444443


Q ss_pred             HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001600          437 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF  516 (1047)
Q Consensus       437 ~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF  516 (1047)
                      ....+..+.+       ..|..|--.-.++..|++....+.    .....|-..++.+-..++..+.-=-..|......+
T Consensus       355 a~~~~e~~~k-------~~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  355 AAKAEEEKAK-------EAMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA  423 (522)
T ss_pred             HHHhhhcchh-------hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322221       123333333333333333332111    12233455555555555555544444444444444


Q ss_pred             HHhhh
Q 001600          517 MNKMV  521 (1047)
Q Consensus       517 ~~kMe  521 (1047)
                      .+-..
T Consensus       424 eaaKa  428 (522)
T PF05701_consen  424 EAAKA  428 (522)
T ss_pred             HHHHH
Confidence            44333

Several sequences in this family are described as being myosin heavy chain-like.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=90.79  E-value=57  Score=41.41  Aligned_cols=76  Identities=18%  Similarity=0.247  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001600          375 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA  450 (1047)
Q Consensus       375 eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe  450 (1047)
                      .+-...-+|..+......+......+-.-+-+|+.+.+.=+++-.==..||..+-........|..++|.|+..-+
T Consensus       278 ~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle  353 (775)
T PF10174_consen  278 YKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE  353 (775)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3333444555566666666666655666666666666555555433445666777777777777888777766543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.57  E-value=84  Score=41.54  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001600          380 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI  459 (1047)
Q Consensus       380 ~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L  459 (1047)
                      ..+..++.++...+..-..++.+++..+.+.++|=.-|+-.+..+..-.+.+-....-+++..++.+..--....+...+
T Consensus       475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~  554 (1293)
T KOG0996|consen  475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL  554 (1293)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            34566777777888888889999999999999998888888888887788777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hhhhhhhhhHHH
Q 001600          460 DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK--RDVDSLNREREE  515 (1047)
Q Consensus       460 DEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relEsL~~ekEs  515 (1047)
                      --+..++.+++.....+=..+...++.=+.++-.-+..|...-.  .=+.+|.+.+++
T Consensus       555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes  612 (1293)
T KOG0996|consen  555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES  612 (1293)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence            77777777777776666666665555444444444443332222  235667666664

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=89.55  E-value=43  Score=38.14  Aligned_cols=54  Identities=22%  Similarity=0.354  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 001600          328 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI  381 (1047)
Q Consensus       328 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~  381 (1047)
                      ..|..++..+.++--+|-.+.+.+.++=+++++....|..+-.+|-..+.+++.
T Consensus        30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~   83 (294)
T COG1340          30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA   83 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777777777777777777777777777776666666666665543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.45  E-value=73  Score=40.63  Aligned_cols=116  Identities=23%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001600          373 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF  452 (1047)
Q Consensus       373 ~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF  452 (1047)
                      .+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++        |.++.++-+      
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQR------  381 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQR------  381 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH------
Confidence            356778888899999999999999999999999999999998888888776665544        333332211      


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001600          453 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS  508 (1047)
Q Consensus       453 E~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEs  508 (1047)
                          |.=-.+-++-.|+.++-.--|+.+++...-|-++.|.  ..|.+|..|+-|-
T Consensus       382 ----eiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~  431 (1118)
T KOG1029|consen  382 ----EIERQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEW  431 (1118)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHH
Confidence                1111122223334444444556666666666665543  3444444444443

>PRK12705 hypothetical protein; Provisional

Probab=89.27  E-value=22  Score=42.90  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=34.3

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001600          291 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL  358 (1047)
Q Consensus       291 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL  358 (1047)
                      +...|..++.+++.++.++..+       |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.+
T Consensus        61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~  121 (508)
T PRK12705         61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL  121 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666655555       444666666666666666666665555555444444433

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=88.95  E-value=12  Score=39.41  Aligned_cols=59  Identities=25%  Similarity=0.383  Sum_probs=38.4

Q ss_pred             HHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001600          308 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD  366 (1047)
Q Consensus       308 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le  366 (1047)
                      ++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|..-+..++
T Consensus        72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777777777776666666666666655555555553

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.77  E-value=1.1e+02  Score=40.60  Aligned_cols=223  Identities=21%  Similarity=0.308  Sum_probs=124.1

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001600          405 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL  484 (1047)
Q Consensus       405 E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~  484 (1047)
                      ++....+.++.++-+--.+.++....+-.....|+++.+..+-.+..|++.-|-.+..-+..+.|...+.+..+..++-+
T Consensus       384 n~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l  463 (1293)
T KOG0996|consen  384 NKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEEREL  463 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556667777777777888888888888888888888888888888888888888888888888877777776666666


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHh---hhhhHhhhhhhHHHHHHHHHHHH
Q 001600          485 KDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF---LLGIEMQKRDLENCIEKRREELE  561 (1047)
Q Consensus       485 ~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~---l~d~EmqkreLE~~i~~R~EEiE  561 (1047)
                      ....+.|+++=.+.+..+           +.....|.    -|..++..-|+.+   --++++.. ...+...++.++..
T Consensus       464 ~e~~~~l~~~t~~~~~e~-----------~~~ekel~----~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk  527 (1293)
T KOG0996|consen  464 DEILDSLKQETEGIREEI-----------EKLEKELM----PLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELK  527 (1293)
T ss_pred             HHHHHHHhhhhhhhHHHH-----------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            655555555555544444           33333332    2333333333322   22233322 23445566667776


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001600          562 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ  641 (1047)
Q Consensus       562 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q  641 (1047)
                      +.|..-.....+.+.    .|+.++..+    ..++.|+....+       +-.++-..   ++.---.|..+++++.+-
T Consensus       528 ~~L~~~~~~~~e~~~----~l~~~k~~l----~~~k~e~~~~~k-------~l~~~~~e---~~~~~~~~~~~rqrveE~  589 (1293)
T KOG0996|consen  528 GKLLASSESLKEKKT----ELDDLKEEL----PSLKQELKEKEK-------ELPKLRKE---ERNLKSQLNKLRQRVEEA  589 (1293)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHhh----hhHHHHHHHHHH-------hHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            666655444444332    234444333    223333332222       22222221   222222344445555555


Q ss_pred             HHHHHH--hHHHHHHHHHHhhh
Q 001600          642 RQLLHA--DREEIQAESERLKK  661 (1047)
Q Consensus       642 RE~~~~--ERe~f~~~vE~lK~  661 (1047)
                      +..+.+  -|..++.++-++|.
T Consensus       590 ks~~~~~~s~~kVl~al~r~ke  611 (1293)
T KOG0996|consen  590 KSSLSSSRSRNKVLDALMRLKE  611 (1293)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHH
Confidence            554433  34556666666654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=87.33  E-value=84  Score=38.79  Aligned_cols=216  Identities=18%  Similarity=0.199  Sum_probs=119.9

Q ss_pred             hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001600          188 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN  267 (1047)
Q Consensus       188 Ee~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~  267 (1047)
                      +....+..+.+..+++.|+++...|+.-...++.-...+......+...+.....++..+..+++=...|...=..-  .
T Consensus       320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~  397 (594)
T PF05667_consen  320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A  397 (594)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence            34455666677777777777777666666666555555555555555555455555544444444322222110000  2


Q ss_pred             HHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHH
Q 001600          268 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER  347 (1047)
Q Consensus       268 EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K  347 (1047)
                      .+|.+++.    -..|..++..+.+..|.-+.++++.=+....              .++-+.-.+...++........-
T Consensus       398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~--------------~~~~e~~~~~~~ik~~r~~~k~~  459 (594)
T PF05667_consen  398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKAS--------------NRESESKQKLQEIKELREEIKEI  459 (594)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------hcchHHHHHHHHHHHHHHHHHHH
Confidence            22333322    2334455555555566555555443322222              22222223334444444444444


Q ss_pred             hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001600          348 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS  418 (1047)
Q Consensus       348 sk~LKEkEksLkaeEK~le~e---------k~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~l  418 (1047)
                      ...++.|+...+...+.++.-         ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus       460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli  539 (594)
T PF05667_consen  460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI  539 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444444444433333221         23455556678888999999999999999999999999999998888887


Q ss_pred             HHHHH
Q 001600          419 VLEIK  423 (1047)
Q Consensus       419 rLQse  423 (1047)
                      -=.++
T Consensus       540 frdAK  544 (594)
T PF05667_consen  540 FRDAK  544 (594)
T ss_pred             HHHhh
Confidence            76666

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=86.73  E-value=47  Score=35.35  Aligned_cols=143  Identities=20%  Similarity=0.289  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001600          414 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ  493 (1047)
Q Consensus       414 R~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~  493 (1047)
                      |..-+.|-.-||++|...|......-+...++.++-.+.-.--..+.+.+++|++.+......+..|.....    +++ 
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~----rl~-   96 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA----RLK-   96 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-
Confidence            445667778899999999999999999999999999999988888999999999888876665555544322    111 


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001600          494 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK  569 (1047)
Q Consensus       494 Ek~~~r~~~krelEsL~~ekEsF~---~kMehErs~~~eKiq~Erad~l~d~EmqkreL-E~~i~~R~EEiE~~L~EREk  569 (1047)
                             ....++..|..+.+.+.   .+++.||.+|..+-..    +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus        97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea  164 (201)
T PF13851_consen   97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA  164 (201)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   23455566666665553   3444555555554442    222322 22222 23445556666666666665


Q ss_pred             HHHH
Q 001600          570 AFEE  573 (1047)
Q Consensus       570 ~FEe  573 (1047)
                      .+.+
T Consensus       165 qL~e  168 (201)
T PF13851_consen  165 QLNE  168 (201)
T ss_pred             HHHH
Confidence            5543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=86.19  E-value=1.6e+02  Score=40.84  Aligned_cols=344  Identities=18%  Similarity=0.183  Sum_probs=166.4

Q ss_pred             hhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhHHHHHHHHHHhchHHHHHHH
Q 001600           98 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKIL  170 (1047)
Q Consensus        98 eKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------aE~ea~E~~~~~qRe~L~eweKkL  170 (1047)
                      +.......=++..+.....++--...+..++.-+++.=+.|+.+-..|.       .|.+++....+.++..|...+-..
T Consensus       710 er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~  789 (1822)
T KOG4674|consen  710 ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK  789 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455556666777777777777788888888888888887776654       445555555555555555555444


Q ss_pred             HHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHH----HhhhHHHH------
Q 001600          171 QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS----LLKREEAV------  240 (1047)
Q Consensus       171 qe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~----l~~rEee~------  240 (1047)
                      ...++....+..-+++          .+..++.+|..++++++....-++.-..+++.-+..    +..-....      
T Consensus       790 ~~~e~s~~~~k~~~e~----------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~  859 (1822)
T KOG4674|consen  790 NELEESEMATKDKCES----------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTS  859 (1822)
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444442          234455555556665555555544444433333322    12222223      


Q ss_pred             -HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHh---HHHhhhhhhhHHHHHHHH---hhhHHHHH---HHHHHHHH
Q 001600          241 -IEREASLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEI---EKKRRAWE  310 (1047)
Q Consensus       241 -~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~k---rKs~eeEl---e~K~~~~E  310 (1047)
                       +.....+.+.|..+..|..+|.   .+.++.+..+.   .....-+-..|..++++-   +..|-...   .+=-...-
T Consensus       860 l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~  936 (1822)
T KOG4674|consen  860 LDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYS  936 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3333333444444444444443   35666666665   233333334466665554   22222222   11112222


Q ss_pred             hhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHH
Q 001600          311 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEV  379 (1047)
Q Consensus       311 ~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk--------aeEK~---le~ek~~L~~eKEel  379 (1047)
                      .-|.-|..+...+.+--+.++.+.+.+..+--.|+.++..|+..=..|.        -.+++   +..+..-++.+...+
T Consensus       937 s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen  937 SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHH
Confidence            3333344444444444444444444444444444444333332222221        11221   222333344444444


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001600          380 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF  452 (1047)
Q Consensus       380 ~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER----~E~l---rLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF  452 (1047)
                      .....+..+....+...+..+   .+.+....+.-    ..|.   ..=.+|+++..+|-.+-..|-+.++-+...-..|
T Consensus      1017 ~~~~s~~~~~~~~~k~dl~~~---~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~ 1093 (1822)
T KOG4674|consen 1017 LKAASQANEQIEDLQNDLKTE---TEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQ 1093 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhc
Confidence            444444444333333333222   22222222211    1111   1224567777888888888888888888888888


Q ss_pred             HHHHh
Q 001600          453 EAEWE  457 (1047)
Q Consensus       453 E~EWE  457 (1047)
                      ++-|.
T Consensus      1094 ~~~w~ 1098 (1822)
T KOG4674|consen 1094 ERDWS 1098 (1822)
T ss_pred             ccchH
Confidence            88885

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=86.10  E-value=5.4  Score=48.85  Aligned_cols=119  Identities=20%  Similarity=0.338  Sum_probs=0.0

Q ss_pred             HHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhch-HHHHHHHHHHHHHHHHH
Q 001600          102 EAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSL-SDRKKILQQEHERLLDA  180 (1047)
Q Consensus       102 EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L-~eweKkLqe~eeRL~e~  180 (1047)
                      +.|.++...........++..+++..++.+..++..+..++.....+....+..+......| .+-.-.+.+..+.....
T Consensus        90 ~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l  169 (722)
T PF05557_consen   90 ELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSL  169 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444455555555555555555444444444444444443222222 11111111111111112


Q ss_pred             hhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHh
Q 001600          181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN  220 (1047)
Q Consensus       181 qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk  220 (1047)
                      +.-+.+=.-.+......++..+.++++.+..++.-...+.
T Consensus       170 ~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~  209 (722)
T PF05557_consen  170 KNELSELERQAENAESQIQSLESELEELKEQLEELQSELQ  209 (722)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2112222222344445556666666666666655554443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.00  E-value=76  Score=36.12  Aligned_cols=167  Identities=23%  Similarity=0.203  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001600          330 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA  409 (1047)
Q Consensus       330 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lki  409 (1047)
                      |-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++......+..
T Consensus       121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~  200 (312)
T smart00787      121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED  200 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            44555666666667777777766666666655555555555555555555666665555555555555554444433322


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001600          410 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD  489 (1047)
Q Consensus       410 tkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~e  489 (1047)
                      -  +..++..+..+|++    .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus       201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~  274 (312)
T smart00787      201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE  274 (312)
T ss_pred             C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            1  24556555555444    34445556677888999999999999999999999999998888888888889899999


Q ss_pred             hhHHHHHHHHHHH
Q 001600          490 SLRQERDAMRDQH  502 (1047)
Q Consensus       490 rLK~Ek~~~r~~~  502 (1047)
                      +|+..-..++..+
T Consensus       275 ~Lk~~~~~Le~l~  287 (312)
T smart00787      275 KLKEQLKLLQSLT  287 (312)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888887654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=83.94  E-value=1.1e+02  Score=37.31  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=17.5

Q ss_pred             HHHHHHHhhHhhhhh----hhhHHHHHHhHHHHHHHHH
Q 001600           39 AIAEARKREESLKKT----LGVEKECIASLEKAVHEIR   72 (1047)
Q Consensus        39 ALsEaeKREEnLkKA----LgvEKqCVadLEKAL~Emr   72 (1047)
                      .|+......+.|+.|    ||+.-  +..|.+-|..+.
T Consensus       160 ~la~~~~~~~~l~~Ai~~LlGl~~--~~~L~~dl~~~~  195 (650)
T TIGR03185       160 ALANPDRLASLLKEAIEVLLGLDL--IDRLAGDLTNVL  195 (650)
T ss_pred             HHhccccchHHHHHHHHHHhCcHH--HHHHHHHHHHHH
Confidence            344444445555555    78777  555555555543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.47  E-value=84  Score=35.42  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001600          426 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID  460 (1047)
Q Consensus       426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD  460 (1047)
                      .+|+.++.+...+....+.+..++..+..+=..++
T Consensus       230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444433333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=83.02  E-value=14  Score=45.43  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHh
Q 001600            9 KELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKR   46 (1047)
Q Consensus         9 KEwtSKyEeLkqa~~eae~~lKREqaAhl~ALsEaeKR   46 (1047)
                      .+..+++..|++.+...+.-+++.+-.|-.++++..++
T Consensus        64 ~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~  101 (722)
T PF05557_consen   64 IELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQ  101 (722)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777777777777777777666666655544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.24  E-value=66  Score=32.69  Aligned_cols=90  Identities=19%  Similarity=0.289  Sum_probs=67.9

Q ss_pred             HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001600          116 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL  195 (1047)
Q Consensus       116 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~  195 (1047)
                      .|.-+...++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-...|.++..+.....           .-.
T Consensus        11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~   79 (143)
T PF12718_consen   11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN   79 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence            344455667778888888888888889999888888888888888888888888888888776655           334


Q ss_pred             HHHhHhHHHHHHHhhcHHHHH
Q 001600          196 QELSRKEKELEASRANVEEKF  216 (1047)
Q Consensus       196 ~~l~~kEkeLEeak~kie~~~  216 (1047)
                      +-+..+|.+|+.+..++..+.
T Consensus        80 rriq~LEeele~ae~~L~e~~  100 (143)
T PF12718_consen   80 RRIQLLEEELEEAEKKLKETT  100 (143)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            456667777777766665443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.97  E-value=63  Score=35.46  Aligned_cols=77  Identities=26%  Similarity=0.319  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001600          562 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ  641 (1047)
Q Consensus       562 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q  641 (1047)
                      ..++.+-..|+.-+..-++.+.++...- +=+++..-|+..|..||+       ..-+++-.|+.||..|.+.=..++..
T Consensus         4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e   75 (230)
T PF10146_consen    4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE   75 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888888888888888888777654 455555555555555554       45677888999999999888888877


Q ss_pred             HHHHH
Q 001600          642 RQLLH  646 (1047)
Q Consensus       642 RE~~~  646 (1047)
                      |....
T Consensus        76 r~~~~   80 (230)
T PF10146_consen   76 RNKRQ   80 (230)
T ss_pred             HHHHH
Confidence            77643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=80.29  E-value=2.2e+02  Score=38.12  Aligned_cols=28  Identities=25%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001600          620 EWAELNNSIEELMVQRQKLEEQRQLLHAD  648 (1047)
Q Consensus       620 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E  648 (1047)
                      --.|++| +-+|..++.+|...|....++
T Consensus      1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence            3457788 999999999998887665544

>PRK09039 hypothetical protein; Validated

Probab=80.20  E-value=1.2e+02  Score=34.87  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=73.3

Q ss_pred             hhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001600           49 SLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL  128 (1047)
Q Consensus        49 nLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL  128 (1047)
                      .|=-.|+.+...-++|+-.|.+|++.+.    ++...-+.+....++...-..+++..+....+.+++..-.++++.+..
T Consensus        64 ~L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V  139 (343)
T PRK09039         64 ELADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQV  139 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3777899999999999999999999888    233333333333332222233566666666666666666666777777


Q ss_pred             HHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHH
Q 001600          129 QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK  167 (1047)
Q Consensus       129 ~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~ewe  167 (1047)
                      .-+-+.=.+||.++-+..++..+.+......+..+.+.+
T Consensus       140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777766666666666655544333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1047
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	7e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 93.0 bits (230), Expect = 3e-19
 Identities = 106/644 (16%), Positives = 214/644 (33%), Gaps = 164/644 (25%)

Query: 118 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 175
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 176 -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 225
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 226 LDLTLVSLLK----REEAVIEREASLQ--KKEQKLLV------SQETLASK--ESNEIQK 271
           L        K    R +  ++   +L   +  + +L+       +  +A     S ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 272 IIANH------------ESALRVKQ-----------SEFEAELAIKYKLAEDEIEKKRRA 308
            +               E+ L + Q           S  +    IK ++      + RR 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL 237

Query: 309 WELRDLDLGQREESLL------EREH--DLEVQSRALV---DK------------EKDLV 345
            + +       E  LL        +      +  + L+    K               L 
Sbjct: 238 LKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 346 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQKSLSSLDEKKKQV 400
             S  L   E K +   K  D +   L +E    N     II   ++  L++ D  K  V
Sbjct: 293 HHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HV 350

Query: 401 NCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMVETDKLQLEKAKF 452
           NC  DKL   ++S    L   E + + + L        +    L L+             
Sbjct: 351 NC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395

Query: 453 EAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS----------LRQERDAMR 499
              W ++I         +   V  +  +   SL  K  ++S          L+ + +   
Sbjct: 396 ---WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 500 DQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQKRDLENCIEKRR 557
             H+  VD  N  +    + ++  + +  +++ I       L  IE  +R          
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL------F 493

Query: 558 EELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRR 617
             +   FR     F E+K+R      S    A   +      +++L   +  I  +  + 
Sbjct: 494 RMVFLDFR-----FLEQKIRH----DSTAWNASGSILNT---LQQLKFYKPYICDNDPKY 541

Query: 618 DREWAELNN---SIEELMVQRQKLEEQRQLLHADREEIQAESER 658
           +R    + +    IEE ++  +  +  R  L A+ E I  E+ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 4e-09
 Identities = 92/629 (14%), Positives = 185/629 (29%), Gaps = 173/629 (27%)

Query: 501 QHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ--QERADFLLGIEMQKRDLENCIEKRRE 558
            H   +D    E +     ++    + F      ++  D    I + K ++++ I  +  
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDA 60

Query: 559 E---------LESSFREREKAFEEEKMR---EFQQISSLKEKAEKELEQVTLEIKRLDLE 606
                     L S   E  + F EE +R   +F     L    + E  Q ++  +    +
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LMSPIKTEQRQPSMMTRMYIEQ 115

Query: 607 RMEINMDRQRRD-REWAELNNSIEELMVQ-RQKLEEQRQ----LLH-------------- 646
           R     DR   D + +A+ N S  +  ++ RQ L E R     L+               
Sbjct: 116 R-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 647 ADREEIQA----------------ESERLKKLEDL--KIAVDYMAVSE-MQRSRLEHSQK 687
               ++Q                     L+ L+ L  +I  ++ + S+     +L     
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 688 KISAKRHLNQQTSLAHADLGSDQKFDVTNNG--DRFNTPSVQ-KTASASPPSLARFSWIK 744
           + +  R L +     +  L      +V N    + FN   +  K        L       
Sbjct: 231 Q-AELRRLLKSKPYENCLLVLL---NVQNAKAWNAFN---LSCKI-------LL----TT 272

Query: 745 RFADLVFKHSGENSVENDEEKSPTSDHEDASLT-----------INSRKRQ-PVRYSFGE 792
           RF  +       + +        + DH   +LT           ++ R +  P       
Sbjct: 273 RFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 793 PKVI-------------------LEVPSENEVVKRTVD-LESENNQNAAQKCKQSVSEDG 832
           P+ +                   +       +++ +++ LE    +    +   SV    
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPS 384

Query: 833 IHAARK--------------RRVDVDCVDPSELLMQNNKRRK-----QQEDFPRNSSEEA 873
            H                    V       S L+ +  K           +       E 
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 874 INHGAVAEQSNLPE--DQHTLTSKNKSN-----VPEGLHTLTSNNHTQGGNEEASILIVD 926
             H ++ +  N+P+  D   L            +  G H L +  H +       ++ +D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHH-LKNIEHPE-RMTLFRMVFLD 499

Query: 927 ------KIIKISEVTCEMTDADNFINQEKI--------DGSQNSVAESVQDIVKVGGTND 972
                 KI   S          N + Q K         D     +  ++ D +     N 
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 973 HSTPAHTDDVVLPYISEIDGMVQE--KQM 999
             +  +TD + +  ++E + + +E  KQ+
Sbjct: 560 ICSK-YTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-05
 Identities = 54/352 (15%), Positives = 111/352 (31%), Gaps = 106/352 (30%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE------------E 48
           M L   E K L  KY   +      E+L  + R   LS IAE+ +              +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCD 353

Query: 49  SLKKTLGVEKECIASLEKAVHEIRA---------ESA--ETKVAA----DSKFAEARCMV 93
            L   +   +  +  LE A  E R           SA   T + +    D   ++   +V
Sbjct: 354 KLTTII---ESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 94  ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 153
               K             SL           E++ +E       +   +           
Sbjct: 409 NKLHKY------------SL----------VEKQPKESTISIPSIYLEL----------- 435

Query: 154 REIIRERQSLSDRKKILQQ-EHERLLDAQTLLNERED-----HI---LSKLQELSRKEKE 204
           +  +    +L   + I+      +  D+  L+    D     HI   L  + E   +   
Sbjct: 436 KVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTL 492

Query: 205 LEASRAN---VEEKFK----ALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL-- 255
                 +   +E+K +    A N   S L+ TL  L   +  + + +   ++    +L  
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 256 ---VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 304
              + +  + SK ++ ++  +   + A+              ++ A  ++++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAI--------------FEEAHKQVQR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 82.6 bits (204), Expect = 4e-16
 Identities = 58/352 (16%), Positives = 137/352 (38%), Gaps = 19/352 (5%)

Query: 230  LVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEA 289
            L+ + ++EE +  ++  LQ+ +++   ++  L      E+++          + Q + +A
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELK-----ELEQKHTQLCEEKNLLQEKLQA 903

Query: 290  ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 349
            E  +       E E+ R     +  +L +    +  R  + E +S+ L  ++K + ++  
Sbjct: 904  ETELY-----AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-- 956

Query: 350  LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 409
             + + E +L    +E +  +  LQ EK   +     ++  +  ++++  ++   +  LE 
Sbjct: 957  -MLDLEEQL----EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 410  MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKE 469
              S+       E +  + L  ++ +   ++ E +    ++ K   E E I  K E    +
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 470  AERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFT 529
                  E       LK +     +E  A   + + +    N   ++ + ++    S+   
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK-IRELESHISDLQE 1130

Query: 530  KIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 581
             ++ E+A      E QKRDL   +E  + ELE +        E         
Sbjct: 1131 DLESEKAA-RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.0 bits (192), Expect = 1e-14
 Identities = 72/412 (17%), Positives = 157/412 (38%), Gaps = 54/412 (13%)

Query: 96   AQKKFAEAEAKLHAAESLQAEANRYHRSAERK----------LQEVVAREDDLSRRIASF 145
            A+K FA+ + +L +   +Q     +                 L +V  +E+++  +    
Sbjct: 807  ARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEEL 866

Query: 146  KADCEEKER------EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 199
            +   E +++      E+ ++   L + K +LQ++ +   +      E    + +K QEL 
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 200  RKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLL 255
                E+EA     EE+ + L  EK  +   ++ L ++    E A  + +      + K+ 
Sbjct: 927  EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986

Query: 256  VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 315
              ++ +   E ++  K+       L  + S+    LA + + A+  + K +   E    +
Sbjct: 987  KMEDDILIME-DQNNKLTK-ERKLLEERVSDLTTNLAEEEEKAK-NLTKLKNKHESMISE 1043

Query: 316  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 375
            L  R +   +   +LE   R L  +  DL E+   L+ +  +L          K+ L K+
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL----------KAQLAKK 1093

Query: 376  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQK 435
            +EE+    + L+   S  +   K++   +  +                L+E+L+  +A +
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHIS--------------DLQEDLESEKAAR 1139

Query: 436  LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDE 487
                   +K + +K     E E +  + E+           R    K   D+
Sbjct: 1140 -------NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.4 bits (188), Expect = 3e-14
 Identities = 62/361 (17%), Positives = 141/361 (39%), Gaps = 41/361 (11%)

Query: 340  KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQ 399
            +E+++  +   L+  + +    E E    +    +  EE N+++  LQ       E ++ 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 400  VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 459
                  K + ++    E+   E +++EE +            + +LQ EK K + +   +
Sbjct: 915  RVRLAAKKQELEEILHEM---EARIEEEEE-----------RSQQLQAEKKKMQQQMLDL 960

Query: 460  DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNK 519
            +E+ EE     +++ +E+V     +K   D +    D          + L +ER+     
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED--------QNNKLTKERKL---- 1008

Query: 520  MVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREF 579
                         +ER   L     ++ +    + K + + ES   E E   ++E+ +  
Sbjct: 1009 ------------LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE-KSR 1055

Query: 580  QQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 639
            Q++  +K K E E   +  +I  L  +  E+     +++ E       +E+   Q+    
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 640  EQRQLLHADREEIQA--ESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQ 697
            ++ + L +   ++Q   ESE+  + +  K   D     E  ++ LE +    + ++ L  
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 698  Q 698
             
Sbjct: 1176 S 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 60/372 (16%), Positives = 149/372 (40%), Gaps = 38/372 (10%)

Query: 281  RVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK 340
             +K +  E E+  K +  +   E++++A      +L Q+   L E ++ L+ + +A  + 
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELK-ELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 341  EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 400
              +  E    L  K+ +L     E + +    ++  +++   K  +Q+ +  L   ++Q+
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL---EEQL 964

Query: 401  NCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 460
               +   + ++ E         K+++++ ++  Q  +L  E   L+   +         +
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 461  EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 520
            EK + L K   +           + +    L++E      + +++++ + R+ E   + +
Sbjct: 1025 EKAKNLTKLKNKH-------ESMISELEVRLKKEE-----KSRQELEKIKRKLEGESSDL 1072

Query: 521  VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 580
              + +E   +I + +A      ++ K++ E      R E E+S +        +K+RE +
Sbjct: 1073 HEQIAELQAQIAELKA------QLAKKEEELQAALARLEDETSQKNNA----LKKIRELE 1122

Query: 581  -QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 639
              IS L+E  E E              R +    ++    E   L   +E+ +      +
Sbjct: 1123 SHISDLQEDLESE-----------KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

Query: 640  EQRQLLHADREE 651
            E R   + D ++
Sbjct: 1172 ELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 73.3 bits (180), Expect = 3e-13
 Identities = 65/353 (18%), Positives = 131/353 (37%), Gaps = 12/353 (3%)

Query: 4    LILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 63
            L      L     Q +      E LQ+              K  E     L  EK  +  
Sbjct: 842  LFFXIXPLLKVTRQEEEMQAKDEELQRTKER--QQKAEAELKELEQKHTQLCEEKNLLQE 899

Query: 64   LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 123
              +A  E+ AE+ E +V   +K  E   ++   + +  E E +    ++ + +  +    
Sbjct: 900  KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959

Query: 124  AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL 183
             E +L+E  A    L     +     ++ E +I+      +   K  +   ER+ D  T 
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 184  LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 243
            L E E+    K + L++ + + E+  + +E + K   + +  L+     L      + E+
Sbjct: 1020 LAEEEE----KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 244  EASLQKKEQKLLVSQETLASKESNEIQKIIA--NHESALRVKQSEFEAELAIKYKLAEDE 301
             A LQ +  +L   +  LA KE  E+Q  +A    E++ +    +   EL       +++
Sbjct: 1076 IAELQAQIAEL---KAQLAKKEE-ELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 302  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 354
            +E ++ A    +       E L   + +LE        +++         ++K
Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 57/298 (19%), Positives = 118/298 (39%), Gaps = 35/298 (11%)

Query: 422  IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 481
             + KE      A+  EL  +  +L  EK   + + +   E   E  +   R+A ++  + 
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 482  KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 541
            + L +    + +E +             +++ +    KM  +  +   ++++E A     
Sbjct: 927  EILHEMEARIEEEEER------------SQQLQAEKKKMQQQMLDLEEQLEEEEAA-RQK 973

Query: 542  IEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE---KAEKELEQVTL 598
            ++++K   +  I+K  +++     +  K  +E K         L+E        L +   
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK--------LLEERVSDLTTNLAEEEE 1025

Query: 599  EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 658
            + K L   + +        +    +   S +EL   ++KLE +   LH    E+QA+   
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 659  L-----KKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 711
            L     KK E+L+ A+  +   E + S+  ++ KKI   R L    S    DL S++ 
Sbjct: 1086 LKAQLAKKEEELQAALARL---EDETSQKNNALKKI---RELESHISDLQEDLESEKA 1137

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 33/262 (12%), Positives = 108/262 (41%), Gaps = 16/262 (6%)

Query: 432  RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 491
                +  +++  + + E    + E +   E++++   E + +  +   + +     ++ L
Sbjct: 842  LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901

Query: 492  RQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 551
            + E +   +  +  V    +++E  + +++HE      + ++        ++ +K+ ++ 
Sbjct: 902  QAETELYAEAEEMRVRLAAKKQE--LEEILHEMEARIEEEEERSQQ----LQAEKKKMQQ 955

Query: 552  CI---EKRREELESSFR--EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 606
             +   E++ EE E++ +  + EK   + K+++ +    + E    +L +   E K L+  
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK---ERKLLEER 1012

Query: 607  RMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 666
              ++  +    + +   L     +      +LE + +     R+E++    +L+   +  
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE--GESS 1070

Query: 667  IAVDYMAVSEMQRSRLEHSQKK 688
               + +A  + Q + L+    K
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAK 1092

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 74.0 bits (182), Expect = 2e-13
 Identities = 44/300 (14%), Positives = 107/300 (35%), Gaps = 24/300 (8%)

Query: 11   LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHE 70
             A  Y        AA ++QK  R          RKR + ++      +  +         
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRM------YVVRKRYQCMRDATIALQALLRGYLV---- 854

Query: 71   IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 130
             R +         S   +       A+  +      L A   LQ    R    A+R+L++
Sbjct: 855  -RNKYQMMLREHKSIIIQKHVRGWLARVHYHR---TLKAIVYLQCCYRR--MMAKRELKK 908

Query: 131  VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 190
            +        R +  +K      E +I++ ++ + ++ K  +   E++ + +   +   + 
Sbjct: 909  LKIEA----RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 191  ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK 250
            + S ++ L   E+E + +      +  +L EE + L   L      ++ + E     + +
Sbjct: 965  LRSDVERLRMSEEEAKNA----TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 251  EQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 310
             ++L+   +   +    E +++        +      E +L  + K  E ++  +R  ++
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 50/317 (15%), Positives = 108/317 (34%), Gaps = 41/317 (12%)

Query: 234  LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAI 293
              R  A   R        QK       +  K    ++      ++ LR      + ++ +
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRMY--VVRKRYQCMRDATIALQALLRGYLVRNKYQMML 862

Query: 294  KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE 353
            +       I+K  R W  R       +  +  +     + ++  + K K         ++
Sbjct: 863  REH-KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 354  KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSE 413
                L    K   L++ + ++ KE        L + +++L+          +KL +    
Sbjct: 922  LHIGLEN--KIMQLQRKIDEQNKE-----YKSLLEKMNNLEITYST---ETEKLRSDVER 971

Query: 414  AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 473
                       +EE      + L L  E  KL+ E  + + E + I+E  ++ + E E++
Sbjct: 972  L-------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 474  AVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQ 533
              E       LK++   L+ E++ +     R +    +E  E M K          K+ +
Sbjct: 1025 VSE-------LKEQNTLLKTEKEEL----NRRIHDQAKEITETMEK----------KLVE 1063

Query: 534  ERADFLLGIEMQKRDLE 550
            E     L +  ++   +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 58.6 bits (142), Expect = 9e-09
 Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 16/250 (6%)

Query: 420  LEIKLKEELDVVRAQKLELMVETDKLQLEKA--KFEAEWEMIDEKREELRKEAERVAVER 477
              ++          +   +  +   +  E      +        +    R     V ++ 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 478  VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 537
                   K E   L+ E  ++ +++K+    L  +  +   K+  ++ E+ + +++    
Sbjct: 896  CYRRMMAKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN- 953

Query: 538  FLLGIEMQKRDLENCIEKRREELESSFREREKAFE-----EEKMREFQQISSLKEKAEKE 592
                +E+        +    E L  S  E + A       +E++ + ++     +  +K 
Sbjct: 954  ----LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 593  LEQVTLEIK-RLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREE 651
            +E+   + K   +    E+         E  ELN  I +    ++  E   + L  + ++
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQ 1067

Query: 652  IQAESERLKK 661
            ++ +    + 
Sbjct: 1068 LELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 58.6 bits (142), Expect = 9e-09
 Identities = 46/318 (14%), Positives = 96/318 (30%), Gaps = 10/318 (3%)

Query: 23   EAAELLQKHDRASHLSAIAEARKREESLKK-TLGVEKECIASLE-KAVHEIRAESAETKV 80
             A   +QK  R          RK+   +++  + +++             +R   A   +
Sbjct: 769  AACIRIQKTIRGWL------MRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIII 822

Query: 81   AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 140
                +    R   +  +      +A L                    +Q+ V        
Sbjct: 823  QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH 882

Query: 141  RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSR 200
               + KA    +        +    + KI  +  ER       L  +   +  K+ E ++
Sbjct: 883  YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942

Query: 201  KEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 260
            + K L     N+E  +    E+  +    L    +  +    R  SLQ +E   L  +  
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ-EEIAKLRKELH 1001

Query: 261  LASKESNEIQKIIANHESALRVKQSEFEAELA-IKYKLAEDEIEKKRRAWELRDLDLGQR 319
                E   I++    ++       SE + +   +K +  E       +A E+ +    + 
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 320  EESLLEREHDLEVQSRAL 337
             E   + E DL  +    
Sbjct: 1062 VEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 15/215 (6%)

Query: 511  REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKA 570
                   NK      E  + I Q+     L      R L+  +  +        +   K 
Sbjct: 849  LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK 908

Query: 571  FEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE 630
             + E     +    L    E ++ Q+  +I   + E   +       +  ++     +  
Sbjct: 909  LKIEARSVERYKK-LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 631  LMVQRQKLEEQRQLLHAD-----------REEIQAESERLKKLEDLKIAVDYM---AVSE 676
             + + +  EE+ +                R+E+       K +E+      +     VSE
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 677  MQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 711
            ++        +K    R ++ Q       +     
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 27/253 (10%), Positives = 73/253 (28%), Gaps = 20/253 (7%)

Query: 427 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER-VAVERVVVSKSLK 485
           +L+  RA +        +          +         E R   +   +V+  + +    
Sbjct: 749 QLEEERASEQTKSDYLKRANELVQWINDKQA-----SLESRDFGDSIESVQSFMNAHKEY 803

Query: 486 DERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQ 545
            + +   + ++    +         + R       V        +I    +      +  
Sbjct: 804 KKTEKPPKGQEVSELE-AIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 862

Query: 546 KRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 605
              L   ++++++      +      + E     + +     +    +  V  ++K L+ 
Sbjct: 863 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEA 922

Query: 606 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL-------------LHADREEI 652
              E      + + +   +   + EL         +R+                  +  +
Sbjct: 923 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 982

Query: 653 QAESERLKKLEDL 665
            AE ERL+K+EDL
Sbjct: 983 LAELERLQKIEDL 995

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 15/230 (6%)

Query: 152 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 211
            +++   E +   D  + +Q       + +      +   +S+L+ +    +  +     
Sbjct: 775 NDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQT-KLRLIK 833

Query: 212 VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 271
            E          + +D T  +L K E+   E      K+++K+ V  +     + N I K
Sbjct: 834 REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ-----KYNRILK 888

Query: 272 IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 331
            + N  +   V     E   +I        ++ K +  E  D +    E         + 
Sbjct: 889 KLENWATTKSVYLGSNETGDSIT------AVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942

Query: 332 VQ-SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 380
            Q +    +   +L ER      ++      +  A+  K+ L  E E + 
Sbjct: 943 AQLTELNYNGVPELTERKDTFFAQQWT--GVKSSAETYKNTLLAELERLQ 990

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 16/264 (6%)

Query: 125  ERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 184
            E++L     +         + +      +++   E +   D  + +Q       + +   
Sbjct: 759  EQRLGSEQTK---SDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE 815

Query: 185  NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 244
               +   +S+L+ +    +  +      E          + +D T  +L K E+   E  
Sbjct: 816  KPPKGQEVSELEAIYNSLQT-KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 245  ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 304
                K+++K+ V  +     + N I K + N  +   V     E        +       
Sbjct: 875  RIELKRQKKIAVLLQ-----KYNRILKKLENWATTKSVYLGSNETG-DSITAVQAKLKNL 928

Query: 305  KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 364
            +    E + L  GQ    LL     L        +   +L ER      ++      +  
Sbjct: 929  EAFDGECQSL-EGQSNSDLLSILAQLT---ELNYNGVPELTERKDTFFAQQWT--GVKSS 982

Query: 365  ADLKKSLLQKEKEEVNIIKSDLQK 388
            A+  K+ L  E E +  I+     
Sbjct: 983  AETYKNTLLAELERLQKIEDLHHH 1006

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 21/256 (8%)

Query: 464  EELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD----VDSLNREREEFMNK 519
            EE R++       +    K   +    +  ++ ++  +   D    V S     +E+   
Sbjct: 755  EEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814

Query: 520  MVHEHSEWFTKIQQERADFLLGIEMQKRDLE--------NCIEKRREELESSFREREKAF 571
                  +  ++++         + + KR+          N I+     LE + +E  +A 
Sbjct: 815  EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 572  EEEKMREFQQISSLKE----KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 627
              E  R+ +    L++      + E    T  +     E  +     Q + +     +  
Sbjct: 875  RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934

Query: 628  IEEL--MVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ---RSRL 682
             + L        L    QL   +   +   +ER       +      +    +    + L
Sbjct: 935  CQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAEL 994

Query: 683  EHSQKKISAKRHLNQQ 698
            E  QK      H +  
Sbjct: 995  ERLQKIEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 34/296 (11%), Positives = 78/296 (26%), Gaps = 38/296 (12%)

Query: 286  EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 345
              E     +    + + +  +RA EL      ++         D     ++ ++  K+  
Sbjct: 753  RIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYK 812

Query: 346  ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 405
            +     + +E   +     +   K  L K +  V        +  S+    +K      +
Sbjct: 813  KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872

Query: 406  KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREE 465
             L        +++VL  K    L     +KLE    T  + L   +       +  K + 
Sbjct: 873  ALRIELKRQKKIAVLLQKYNRIL-----KKLENWATTKSVYLGSNETGDSITAVQAKLKN 927

Query: 466  LRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 525
            L                         +             +  L       + ++     
Sbjct: 928  LEAFDGE------------------CQSLEGQSNSDLLSILAQLTELNYNGVPEL----- 964

Query: 526  EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 581
                   + +  F      Q   +++  E  +  L  +  ER +  E+        
Sbjct: 965  ------TERKDTFF---AQQWTGVKSSAETYKNTLL-AELERLQKIEDLHHHHHHH 1010

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 35/195 (17%), Positives = 88/195 (45%), Gaps = 6/195 (3%)

Query: 316  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 375
            + ++ + L E +  L +  + L D E  + +    L +K  +L    ++A+ K   + ++
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967

Query: 376  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE---ELDVVR 432
            ++   I + D ++    LD + K++   K K  A   +A     L  ++++     + ++
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELK 2027

Query: 433  AQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA--VERVVVS-KSLKDERD 489
             ++ E++     L+   A ++ E+  +  + E+++ E+ +V   V+R +    +L  ER 
Sbjct: 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087

Query: 490  SLRQERDAMRDQHKR 504
               Q+ +    Q   
Sbjct: 2088 RWEQQSENFNTQMST 2102

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 25/233 (10%), Positives = 78/233 (33%), Gaps = 29/233 (12%)

Query: 361  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 420
            +    +    L+ ++++++   +  L   L  L + + QV       + ++    + +  
Sbjct: 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV-------KDLQVSLAQKNRE 1949

Query: 421  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 480
                 E+ +       + +    ++  ++   E + +   E + +L    + +AV++V  
Sbjct: 1950 LDVKNEQAN-------QKLK---QMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999

Query: 481  SKSLKDERDS--LRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 538
               L+    +  LR+E + + +         +                    I   + ++
Sbjct: 2000 YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALE--------KSIATYKEEY 2051

Query: 539  LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEK 591
               I      ++    K + +++ S    +     E+ R  QQ  +   +   
Sbjct: 2052 ATLIRE-TEQIKTESSKVKNKVDRSIALLD-NLNSERGRWEQQSENFNTQMST 2102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00