Citrus Sinensis ID: 001683
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1030 | 2.2.26 [Sep-21-2011] | |||||||
| Q15751 | 4861 | Probable E3 ubiquitin-pro | yes | no | 0.340 | 0.072 | 0.313 | 4e-43 | |
| O95714 | 4834 | E3 ubiquitin-protein liga | no | no | 0.326 | 0.069 | 0.333 | 1e-41 | |
| Q9VR91 | 4912 | Probable E3 ubiquitin-pro | yes | no | 0.352 | 0.073 | 0.318 | 2e-41 | |
| Q4U2R1 | 4836 | E3 ubiquitin-protein liga | no | no | 0.326 | 0.069 | 0.333 | 2e-41 | |
| Q9FN03 | 440 | Ultraviolet-B receptor UV | no | no | 0.312 | 0.731 | 0.327 | 1e-40 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.371 | 0.362 | 0.280 | 2e-33 | |
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.369 | 0.360 | 0.280 | 2e-33 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.370 | 0.361 | 0.276 | 1e-32 | |
| Q9UII4 | 1024 | E3 ISG15--protein ligase | no | no | 0.303 | 0.305 | 0.287 | 2e-32 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | no | 0.297 | 0.291 | 0.294 | 4e-30 |
| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 192/392 (48%), Gaps = 41/392 (10%)
Query: 220 DVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTK 279
DV +WG G G + + V A P ++ ++ QN + ++
Sbjct: 3998 DVYLWGAGRHG-------QLAEAGRNVMVPAAAPSFSQAQQVICGQNCTF------VIQA 4044
Query: 280 EGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSV--SCG-EFQTCALTKSGEIY 336
G V GEG GRLG + D+ ++ L G V + SCG + + ALT+SGE++
Sbjct: 4045 NGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVF 4104
Query: 337 TWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDG 396
+WG ++G +G S PR++ + L G V +++CG H+A+V++ G+LFT+G+G
Sbjct: 4105 SWGDGDYGK--LGHGNSDRQRRPRQI-EALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNG 4161
Query: 397 TFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTW 456
+G LG GN N P+ V +L G ++ VACG HT A+ +A G ++ +
Sbjct: 4162 DYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAV----------SADGSMVWAF 4211
Query: 457 GDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQL 516
GD D G+LG + K P + L + +CG +V LT G VYT G +
Sbjct: 4212 GDGDYGKLGLGNSTAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQ--DRLI 4269
Query: 517 GNPKAKDRS------ITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGL 570
G P+ + R+ I V+ G + E+ ++ G+ H L S G VY WG N+ GQLGL
Sbjct: 4270 GLPEGRARNHNRPQQIPVLAGVIIED----VAVGAEHTLALASNGDVYAWGSNSEGQLGL 4325
Query: 571 GDSQERETPTFVEALRDRQVESVVCGSSITAA 602
G + PT V L+ + V + G +AA
Sbjct: 4326 GHTNHVREPTLVTGLQGKNVRQISAGRCHSAA 4357
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Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Homo sapiens (taxid: 9606) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1030 | ||||||
| 147857410 | 1156 | hypothetical protein VITISV_028768 [Viti | 0.991 | 0.883 | 0.640 | 0.0 | |
| 255571261 | 1086 | Ran GTPase binding protein, putative [Ri | 0.975 | 0.925 | 0.629 | 0.0 | |
| 224079652 | 1078 | predicted protein [Populus trichocarpa] | 0.966 | 0.923 | 0.593 | 0.0 | |
| 225466229 | 1023 | PREDICTED: uncharacterized protein LOC10 | 0.933 | 0.940 | 0.584 | 0.0 | |
| 224135109 | 973 | predicted protein [Populus trichocarpa] | 0.898 | 0.950 | 0.596 | 0.0 | |
| 449469320 | 1088 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.932 | 0.573 | 0.0 | |
| 356569687 | 1043 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.933 | 0.552 | 0.0 | |
| 449484483 | 1077 | PREDICTED: uncharacterized protein LOC10 | 0.955 | 0.913 | 0.568 | 0.0 | |
| 356539788 | 1046 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.934 | 0.544 | 0.0 | |
| 297738141 | 925 | unnamed protein product [Vitis vinifera] | 0.836 | 0.931 | 0.558 | 0.0 |
| >gi|147857410|emb|CAN82853.1| hypothetical protein VITISV_028768 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1320 bits (3416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/1042 (64%), Positives = 807/1042 (77%), Gaps = 21/1042 (2%)
Query: 2 DEKFLIWYSGQKEKQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLI 61
DEKFLIWYSGQ+EKQLRL+S+TKII GQRTVNFQ Q Q +R+ +SFS++YANGERSLDLI
Sbjct: 47 DEKFLIWYSGQEEKQLRLSSITKIIPGQRTVNFQRQLQEERECRSFSLVYANGERSLDLI 106
Query: 62 CKDKVQAESWFLGLRAAISSCRRSRTFSCLREKRGVQSCVSSPASYIRRKHNLGLLEDAT 121
CKDK QA+SWFLGL+A IS C+ R S R GVQ+C +SPA Y RRKHNLGLLED
Sbjct: 107 CKDKAQADSWFLGLKAVISRCQHPRQLSTFRNCVGVQTCFNSPAGYFRRKHNLGLLEDTP 166
Query: 122 ELSQVRSLCGSPSLSLSERCFSDGLSYSSDSFYSSESSSSQIQNLSNIITPSSPHMETEN 181
+ SQVRSLCGSP+ SLSERCFSDGLSYS+DSFYSSESS S ++N+ ++ PSSP++E ++
Sbjct: 167 KFSQVRSLCGSPTQSLSERCFSDGLSYSADSFYSSESSVSNVKNVVDVSLPSSPYVEPDH 226
Query: 182 FMKWELNYADTRCPKNESHRLVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSV 241
+ E YA T + ++ P++ SP +E+ DIL+DVMIWGEG+ GG +GG V
Sbjct: 227 LKQGEEIYAGTEIQTDMLSQVAAPSHASPQMEKNDILRDVMIWGEGIEGGILGGGVYRFG 286
Query: 242 SQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMD 301
+QN Q DALLPKLLES MLDV+ ISLG KHAALVTK GEVFCWGEG G LGHKVNMD
Sbjct: 287 NQNGMQSDALLPKLLESTTMLDVREISLGGKHAALVTKHGEVFCWGEGSGGXLGHKVNMD 346
Query: 302 VSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRK 361
+ PK+VE L+G+ V+SVSCGE+QTCALT SGE+YTWG N G DLVGERR RS W+P +
Sbjct: 347 MGNPKIVESLTGVLVKSVSCGEYQTCALTHSGELYTWGDNGSGIDLVGERRKRSQWIPSR 406
Query: 362 LFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGL 421
L L+G +S VACGEWH AIVSTSGQLFTYGDGTFGVLGHG L+++SQPKEVESL GL
Sbjct: 407 LSGPLNGTSISNVACGEWHMAIVSTSGQLFTYGDGTFGVLGHGKLESISQPKEVESLSGL 466
Query: 422 KVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRL 481
VK+ ACGPWHTAAIV++ DR K N GGKLFTWGD DKGRLGH D ERKLLPTCV +L
Sbjct: 467 WVKAAACGPWHTAAIVEVRADRLKFNTKGGKLFTWGDGDKGRLGHGDQERKLLPTCVAQL 526
Query: 482 VDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGI 541
VD DFVQ SCGRMLTVGLT LG VYTMGSAVHGQLGNP+AKD+SI +V GKLK+EFVK I
Sbjct: 527 VDHDFVQVSCGRMLTVGLTCLGTVYTMGSAVHGQLGNPQAKDKSIAIVGGKLKDEFVKEI 586
Query: 542 SSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITA 601
SSGSYHVA LTS GS+YTWG ANGQLGLGD+++R +P VEALRDRQVES+ CGS TA
Sbjct: 587 SSGSYHVAALTSKGSLYTWGMGANGQLGLGDTEDRNSPAVVEALRDRQVESIACGSGFTA 646
Query: 602 AICLHKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKP 661
AICLHKSIS DQS+CS CRM FGF RKKHNCYNCGL FC ACS KK++NASL PNK KP
Sbjct: 647 AICLHKSISSTDQSACSGCRMAFGFTRKKHNCYNCGLLFCRACSNKKVLNASLAPNKKKP 706
Query: 662 SRVCDTCYNHLQKITHSGRLLKQENQSPRNLLNLQGSLSEEVKEEKGALTPSRGQSFTS- 720
RVCD CY +LQ+I HS RLLK EN +PR LL Q + +E KE++G TP+R Q F+S
Sbjct: 707 FRVCDPCYTYLQRIKHSSRLLKLENHNPRQLLMTQKTSFDE-KEDRGEGTPARTQ-FSSV 764
Query: 721 -----KQSRNVERKP-------GECLESASSLSSGLQRWGQVSCPIRFKTHCHEKSVEPT 768
+ S++ E+KP + +E SSLS+GL RWGQV CP F+ +C E S+
Sbjct: 765 GQPCNEASQSYEKKPFKNQVENQQTVEPVSSLSNGLPRWGQVPCPFLFEKYCRENSIALV 824
Query: 769 PIPKTQMSTHSPLLRKISLGSNF-IPIASTVEKDLSESNKMLNEEVQRLRDQARNLEKQC 827
P+ Q+S+ + GS + + +EKD +++K+L EEV+RLR +AR+LEK C
Sbjct: 825 PLSNNQLSSVPLCWKHSPRGSKYMVSTVVNMEKDFPDTDKILIEEVERLRSEARSLEKLC 884
Query: 828 QIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAAKEAKEGVD 887
Q+ ++K+QECQQK++E WSLAREEA KCKAAKE+IKAL+ RLHT+SEK+S+ ++AK+G+D
Sbjct: 885 QMRSEKIQECQQKLQETWSLAREEAAKCKAAKEVIKALSSRLHTMSEKLSSERDAKDGID 944
Query: 888 ANLPPKLDTDKHPEVKLPKDRKVDSLCSSPIVFSNKLKSVYGRELCHDNSSGSVEDSKVA 947
+ LP + V PK+R++DSLC SPIVFSN L+S+YGR+ C ++ SVEDS +
Sbjct: 945 SKLPQIITR----YVDTPKERQLDSLCGSPIVFSNSLRSMYGRDECQGHTR-SVEDSCLE 999
Query: 948 RTEPQQKGTKASKLEYAEQYEPGIYITFTTLPSGQKGLKRVRFSRRRFTEKAAERWWEEN 1007
+ +P+Q GTK SKLE+ EQYEPG+YITF TL SGQ+GLKRVRFSR+RFTEK AERWWEEN
Sbjct: 1000 KIDPRQNGTKPSKLEWVEQYEPGVYITFITLASGQRGLKRVRFSRKRFTEKEAERWWEEN 1059
Query: 1008 QVVVYQKYGIEEYSNLNQNQMR 1029
Q+ VYQ YGIE Y + +QN+M+
Sbjct: 1060 QIGVYQNYGIEGYISSSQNKMK 1081
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571261|ref|XP_002526580.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223534074|gb|EEF35792.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224079652|ref|XP_002305904.1| predicted protein [Populus trichocarpa] gi|222848868|gb|EEE86415.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225466229|ref|XP_002267377.1| PREDICTED: uncharacterized protein LOC100253065 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224135109|ref|XP_002327568.1| predicted protein [Populus trichocarpa] gi|222836122|gb|EEE74543.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449469320|ref|XP_004152369.1| PREDICTED: uncharacterized protein LOC101216037 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356569687|ref|XP_003553028.1| PREDICTED: uncharacterized protein LOC100797223 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449484483|ref|XP_004156895.1| PREDICTED: uncharacterized protein LOC101227493 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356539788|ref|XP_003538375.1| PREDICTED: uncharacterized protein LOC100794953 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297738141|emb|CBI27342.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1030 | ||||||
| TAIR|locus:2165770 | 1073 | AT5G42140 "AT5G42140" [Arabido | 0.650 | 0.624 | 0.436 | 3.2e-194 | |
| TAIR|locus:505006603 | 1075 | AT5G12350 "AT5G12350" [Arabido | 0.768 | 0.736 | 0.409 | 6.5e-188 | |
| TAIR|locus:2025277 | 1103 | PRAF1 "AT1G76950" [Arabidopsis | 0.690 | 0.644 | 0.410 | 1.1e-187 | |
| TAIR|locus:2086253 | 1045 | AT3G23270 "AT3G23270" [Arabido | 0.754 | 0.743 | 0.396 | 4.2e-171 | |
| TAIR|locus:2009739 | 1006 | AT1G65920 [Arabidopsis thalian | 0.466 | 0.477 | 0.600 | 2e-159 | |
| TAIR|locus:2079147 | 954 | AT3G47660 "AT3G47660" [Arabido | 0.483 | 0.522 | 0.447 | 8.1e-140 | |
| TAIR|locus:2163986 | 440 | UVR8 "UVB-RESISTANCE 8" [Arabi | 0.333 | 0.779 | 0.325 | 3.5e-45 | |
| ZFIN|ZDB-GENE-070718-6 | 4832 | herc2 "hect domain and RLD 2" | 0.355 | 0.075 | 0.329 | 6.3e-38 | |
| UNIPROTKB|D4ACN3 | 4779 | Herc2 "Protein Herc2" [Rattus | 0.355 | 0.076 | 0.329 | 1.7e-37 | |
| UNIPROTKB|E2RDC2 | 4837 | HERC2 "Uncharacterized protein | 0.355 | 0.075 | 0.331 | 4.6e-37 |
| TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1493 (530.6 bits), Expect = 3.2e-194, Sum P(3) = 3.2e-194
Identities = 299/685 (43%), Positives = 430/685 (62%)
Query: 216 DILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAA 275
D L DV IWGE + D ++ ++ D L+PK LES V+LDV +I+ G KHAA
Sbjct: 226 DALGDVYIWGEVLCENVTKFGADKNIGYLGSRSDVLIPKPLESNVVLDVHHIACGVKHAA 285
Query: 276 LVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEI 335
LV+++GEVF WGE GRLGH + DV+ P+L+E L+ ++ V+CGEF TCA+T +GEI
Sbjct: 286 LVSRQGEVFTWGEASGGRLGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCAVTMTGEI 345
Query: 336 YTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGD 395
YTWG H A L+G SHW+P+++ L+G++++ V+CG WHTA+++++GQLFT+GD
Sbjct: 346 YTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCGPWHTALITSTGQLFTFGD 405
Query: 396 GTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFT 455
GTFGVLGHG+ + V P+EVESL GL+ +VACG WH AAIV+++V S+ GKLFT
Sbjct: 406 GTFGVLGHGDKETVFYPREVESLSGLRTIAVACGVWHAAAIVEVIVTHSSSSVSSGKLFT 465
Query: 456 WGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQ 515
WGD DK RLGH D E +L PTCV+ L+D F + +CG LTVGLT GKVYTMGS V+GQ
Sbjct: 466 WGDGDKSRLGHGDKEPRLKPTCVSALIDHTFHRVACGHSLTVGLTTSGKVYTMGSTVYGQ 525
Query: 516 LGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQE 575
LGNP A + +VE KL ++ V+ I+ G+YHVAVLTS V+TWGK ANG+LG GD ++
Sbjct: 526 LGNPNADGKLPCLVEDKLTKDCVEEIACGAYHVAVLTSRNEVFTWGKGANGRLGHGDVED 585
Query: 576 RETPTFVEALRDRQVESVVCGSSITAAICLHKSISVGDQSSCSQCRMPFGFRRKKHNCYN 635
R+ PT V+AL++R V+++ CGS+ TAAICLHK +S +QS CS CR FGF RK+HNCYN
Sbjct: 586 RKAPTLVDALKERHVKNIACGSNFTAAICLHKWVSGTEQSQCSACRQAFGFTRKRHNCYN 645
Query: 636 CGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQKITHSGRLLKQENQSPRNLLNL 695
CGL C +CS+KK + A+L PN GKP RVCD+C++ L K++ + + ++N PR
Sbjct: 646 CGLVHCHSCSSKKSLKAALAPNPGKPYRVCDSCHSKLSKVSEAN-IDSRKNVMPRLSGEN 704
Query: 696 QGSLSE-EVKEEKGALTPSRGQSFTSKQSRNVERKPGECLESASSLSSGLQRWGQVSCPI 754
+ L + E++ K + PS KQ N + G+ ++ S + + Q+ +
Sbjct: 705 KDRLDKTEIRLAKSGI-PSNIDLI--KQLDNRAARQGKKADTFSLVRTSQTPLTQLKDAL 761
Query: 755 RFKTHCHEKSVEPTPIPKTQMSTHSPLLRKISLGSNFIPI--------ASTVEKDLSESN 806
+P P + SP R+ S + PI ++++ + L ++N
Sbjct: 762 TNVADLRRGPPKPAVTPSSSRPV-SPFSRRSSPPRSVTPIPLNVGLGFSTSIAESLKKTN 820
Query: 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLARXXXXXXXXXXXXXXXLA 866
++LN+EV RLR QA +L +C++ +VQ+ +K++EA SLA L
Sbjct: 821 ELLNQEVVRLRAQAESLRHRCEVQEFEVQKSVKKVQEAMSLAAEESAKSEAAKEVIKSLT 880
Query: 867 VRLHTLSEKIS-AAKEAKEGVDANL 890
++ ++ + A EA+ ANL
Sbjct: 881 AQVKDIAALLPPGAYEAETTRTANL 905
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| TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079147 AT3G47660 "AT3G47660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_IV000767 | hypothetical protein (1078 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1030 | |||
| pfam08381 | 59 | pfam08381, BRX, Transcription factor regulating ro | 3e-27 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 3e-27 | |
| cd13365 | 115 | cd13365, PH_PLC_plant-like, Plant-like Phospholipa | 8e-27 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 7e-24 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 1e-21 | |
| pfam01363 | 68 | pfam01363, FYVE, FYVE zinc finger | 5e-19 | |
| cd00065 | 57 | cd00065, FYVE, FYVE domain; Zinc-binding domain; t | 1e-17 | |
| smart00064 | 68 | smart00064, FYVE, Protein present in Fab1, YOTB, V | 8e-16 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-14 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-12 | |
| cd01248 | 108 | cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfm | 9e-12 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-10 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 7e-09 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 1e-07 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 4e-07 | |
| pfam13713 | 39 | pfam13713, BRX_N, Transcription factor BRX N-termi | 4e-07 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 5e-07 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 5e-06 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| pfam03962 | 188 | pfam03962, Mnd1, Mnd1 family | 0.003 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.003 |
| >gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3 | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-27
Identities = 38/58 (65%), Positives = 44/58 (75%)
Query: 958 ASKLEYAEQYEPGIYITFTTLPSGQKGLKRVRFSRRRFTEKAAERWWEENQVVVYQKY 1015
K E+ EQ EPG+YIT TLP G K LKRVRFSR+RF EK A+RWWEEN+ VY+KY
Sbjct: 1 QVKAEWVEQVEPGVYITLVTLPDGTKILKRVRFSRKRFGEKQAQRWWEENKERVYEKY 58
|
The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 59 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|241519 cd13365, PH_PLC_plant-like, Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|241279 cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfment and cell motility protein 1 pleckstrin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1030 | |||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PF08381 | 59 | BRX: Transcription factor regulating root and shoo | 99.96 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.85 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.78 | |
| cd01248 | 115 | PH_PLC Phospholipase C (PLC) pleckstrin homology ( | 99.47 | |
| PF13713 | 39 | BRX_N: Transcription factor BRX N-terminal domain | 99.33 | |
| PF01363 | 69 | FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f | 99.19 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.13 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 99.09 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 99.05 | |
| smart00064 | 68 | FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | 99.03 | |
| KOG1729 | 288 | consensus FYVE finger containing protein [General | 99.01 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.96 | |
| PF12814 | 123 | Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin | 98.94 | |
| KOG1818 | 634 | consensus Membrane trafficking and cell signaling | 98.93 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 98.85 | |
| KOG1819 | 990 | consensus FYVE finger-containing proteins [General | 98.79 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 98.79 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.69 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.63 | |
| cd00065 | 57 | FYVE FYVE domain; Zinc-binding domain; targets pro | 98.6 | |
| KOG1841 | 1287 | consensus Smad anchor for receptor activation [Def | 97.81 | |
| KOG1842 | 505 | consensus FYVE finger-containing protein [General | 97.79 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 97.61 | |
| KOG1843 | 473 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.41 | |
| KOG4424 | 623 | consensus Predicted Rho/Rac guanine nucleotide exc | 96.69 | |
| cd01244 | 98 | PH_RasGAP_CG9209 RAS_GTPase activating protein (GA | 94.97 | |
| smart00233 | 102 | PH Pleckstrin homology domain. Domain commonly fou | 94.72 | |
| PF00169 | 104 | PH: PH domain; InterPro: IPR001849 The pleckstrin | 94.58 | |
| KOG1811 | 1141 | consensus Predicted Zn2+-binding protein, contains | 93.48 | |
| cd01238 | 106 | PH_Tec Tec pleckstrin homology (PH) domain. Tec pl | 93.19 | |
| cd01235 | 101 | PH_SETbf Set binding factor Pleckstrin Homology (P | 93.19 | |
| cd00821 | 96 | PH Pleckstrin homology (PH) domain. Pleckstrin hom | 92.25 | |
| cd01264 | 101 | PH_melted Melted pleckstrin homology (PH) domain. | 92.02 | |
| cd01233 | 100 | Unc104 Unc-104 pleckstrin homology (PH) domain. Un | 90.94 | |
| PF02318 | 118 | FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 | 89.86 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.69 | |
| cd01236 | 104 | PH_outspread Outspread Pleckstrin homology (PH) do | 89.55 | |
| cd01251 | 103 | PH_centaurin_alpha Centaurin alpha Pleckstrin homo | 89.29 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 89.08 | |
| cd01265 | 95 | PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | 87.75 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 87.34 | |
| PF03962 | 188 | Mnd1: Mnd1 family; InterPro: IPR005647 This family | 86.67 | |
| cd01266 | 108 | PH_Gab Gab (Grb2-associated binder) pleckstrin hom | 86.65 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 85.93 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 85.65 | |
| cd00900 | 99 | PH-like Pleckstrin homology-like domain. Pleckstri | 85.45 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 84.86 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 84.2 | |
| cd01246 | 91 | PH_oxysterol_bp Oxysterol binding protein (OSBP) P | 83.93 | |
| cd01252 | 125 | PH_cytohesin Cytohesin Pleckstrin homology (PH) do | 83.49 | |
| PF03904 | 230 | DUF334: Domain of unknown function (DUF334); Inter | 83.4 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 82.71 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 82.66 | |
| PRK15396 | 78 | murein lipoprotein; Provisional | 82.27 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 81.92 | |
| PF02183 | 45 | HALZ: Homeobox associated leucine zipper; InterPro | 81.73 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 81.62 | |
| PHA01750 | 75 | hypothetical protein | 80.8 | |
| TIGR02449 | 65 | conserved hypothetical protein TIGR02449. Members | 80.79 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 80.65 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 80.59 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 80.54 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 80.06 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 80.01 |
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=414.78 Aligned_cols=368 Identities=23% Similarity=0.383 Sum_probs=296.4
Q ss_pred eEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccc--cCCCEEEEEecCCEEEEEEeCCeEEEEecC
Q 001683 212 IERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESA--VMLDVQNISLGAKHAALVTKEGEVFCWGEG 289 (1030)
Q Consensus 212 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N 289 (1030)
......-++||+||.|. .++||.|... .....|...... ....|++++||+.|+++|+.||.||+||.|
T Consensus 61 ~~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N 131 (476)
T COG5184 61 THLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN 131 (476)
T ss_pred hhhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC
Confidence 34667788999999999 9999999864 235777777666 568899999999999999999999999999
Q ss_pred CCCcCCCCCC----------------ccccccEEecc----cCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccC
Q 001683 290 KDGRLGHKVN----------------MDVSCPKLVEC----LSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVG 349 (1030)
Q Consensus 290 ~~GQLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG 349 (1030)
..|+||.... .....|..|+. ....+|++++||++++++|+++|+||.||.+..+.+..|
T Consensus 132 ~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g 211 (476)
T COG5184 132 DDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQG 211 (476)
T ss_pred cccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccc
Confidence 9999997661 12567888776 234489999999999999999999999999865555555
Q ss_pred CCCCcc----eeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCCCeEeeecCCC-eEE
Q 001683 350 ERRSRS----HWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGL-KVK 424 (1030)
Q Consensus 350 ~~~~~~----~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~-~I~ 424 (1030)
...... ..+|..+. ...|+++++|.+|.++|+++|+||+||+|.+||||....+....+..+..+-.. .|+
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 333332 24454443 457999999999999999999999999999999999887776666655543222 378
Q ss_pred EEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCC----CceeeeeEeeecccCceEEEEeccceeEEEe
Q 001683 425 SVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDG----ERKLLPTCVTRLVDFDFVQASCGRMLTVGLT 500 (1030)
Q Consensus 425 ~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~Iv~IacG~~htlaLt 500 (1030)
.|+||.+|++||. .+|+||+||.|.+||||.+.. .....|.....+....|.+|++|..|+++|.
T Consensus 288 ~vacG~~h~~al~-----------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~ 356 (476)
T COG5184 288 YVACGKDHSLALD-----------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILR 356 (476)
T ss_pred hcccCcceEEEEc-----------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEe
Confidence 8999999999996 599999999999999999821 1234566666677778999999999999999
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCC---cceeEEecccccccEEEEEeCCCceeEEecCCeEEEEeCCCCCCCCCCCCC-Cc
Q 001683 501 GLGKVYTMGSAVHGQLGNPKAKD---RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQ-ER 576 (1030)
Q Consensus 501 ~dG~Vy~wG~N~~GQLG~~~~~~---~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsdG~Vy~WG~N~~GQLG~G~~~-~~ 576 (1030)
.+|.||+||.+..||||.+.... ..|..+. ....+.+|+||..|.++.+.+|+||.||.|.+|+||.|+.. +.
T Consensus 357 ~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~ 433 (476)
T COG5184 357 KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADV 433 (476)
T ss_pred cCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhc
Confidence 99999999999999999987432 2222222 13569999999999999999999999999999999999854 56
Q ss_pred ceeeeecc--ccCCeeEEeeecCCccceeeec
Q 001683 577 ETPTFVEA--LRDRQVESVVCGSSITAAICLH 606 (1030)
Q Consensus 577 ~~Pt~V~~--l~~~~V~~IacG~~hT~aI~~~ 606 (1030)
..|+++.. +....++..-||.++.++...+
T Consensus 434 ~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 434 LVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred cccccccccccCCCceEEeccCcceEEEecch
Confidence 77888874 5666777777777777666543
|
|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF13713 BRX_N: Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >KOG1729 consensus FYVE finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis | Back alignment and domain information |
|---|
| >KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
| >KOG1819 consensus FYVE finger-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG1842 consensus FYVE finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1843 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >smart00233 PH Pleckstrin homology domain | Back alignment and domain information |
|---|
| >PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] | Back alignment and domain information |
|---|
| >KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01238 PH_Tec Tec pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >cd00821 PH Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01264 PH_melted Melted pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
| >cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >cd00900 PH-like Pleckstrin homology-like domain | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK15396 murein lipoprotein; Provisional | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA01750 hypothetical protein | Back alignment and domain information |
|---|
| >TIGR02449 conserved hypothetical protein TIGR02449 | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1030 | ||||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 1e-41 | ||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 6e-20 | ||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 2e-06 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 1e-41 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 4e-20 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 2e-41 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 8e-20 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 2e-06 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 2e-41 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 8e-20 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 2e-06 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 1e-36 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 4e-16 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 6e-11 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 4e-20 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 8e-20 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 4e-16 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 2e-14 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 7e-12 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 3e-10 | ||
| 1joc_A | 125 | Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I | 4e-07 | ||
| 3zyq_A | 226 | Crystal Structure Of The Tandem Vhs And Fyve Domain | 2e-06 | ||
| 2yw8_A | 82 | Crystal Structure Of Human Run And Fyve Domain-Cont | 3e-06 | ||
| 2yqm_A | 89 | Solution Structure Of The Fyve Domain In Zinc Finge | 3e-06 | ||
| 1hyi_A | 65 | Solution Structure Of The Eea1 Fyve Domain Complexe | 6e-06 | ||
| 1dvp_A | 220 | Crystal Structure Of The Vhs And Fyve Tandem Domain | 1e-05 | ||
| 1jtd_B | 273 | Crystal Structure Of Beta-Lactamase Inhibitor Prote | 9e-05 | ||
| 3qhy_B | 282 | Structural, Thermodynamic And Kinetic Analysis Of T | 9e-05 | ||
| 1z2q_A | 84 | High-Resolution Solution Structure Of The Lm5-1 Fyv | 3e-04 |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 | Back alignment and structure |
| >pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 | Back alignment and structure |
| >pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 | Back alignment and structure |
| >pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 | Back alignment and structure |
| >pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 | Back alignment and structure |
| >pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 | Back alignment and structure |
| >pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 | Back alignment and structure |
| >pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 | Back alignment and structure |
| >pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
Score = 387 bits (997), Expect = e-126
Identities = 121/397 (30%), Positives = 184/397 (46%), Gaps = 37/397 (9%)
Query: 220 DVMIWGE---GVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAAL 276
V WG G LG G D P L + + +++ GA H
Sbjct: 36 IVCSWGRGEDGQLG-------HG------DAEDRPSPTQLSALDGHQIVSVTCGADHTVA 82
Query: 277 VTKEG-EVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEI 335
++ G EV+ WG G GRLGH + D+ P ++ L GI ++ ++CG+ A+T GE+
Sbjct: 83 YSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEV 142
Query: 336 YTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGD 395
+WG N +G +G + +P+K+ +G+R+ VA G HTA V+ G L+ +G
Sbjct: 143 QSWGRNQNG--QLGLGDTEDSLVPQKI-QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 199
Query: 396 GTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFT 455
G +G LG G+ + P+ V S G K+ VACG HT ++ G L+T
Sbjct: 200 GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY-----------SGALYT 248
Query: 456 WGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQ 515
+G + G+LGH D E L+P + L + Q S G T+ LT GK+Y G GQ
Sbjct: 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 308
Query: 516 LGNPKAKDRSI-TVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQ 574
+G D+ V ++ V +S G H +T +V+ WG+ NGQLG+G+S
Sbjct: 309 VGVGNNLDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESV 367
Query: 575 ERETPTFVEALRDRQVESVVCGSSITAAICLHKSISV 611
+R P +EAL G I ++ S
Sbjct: 368 DRNFPKIIEALSV----DGASGQHIESSNIDPSSGKS 400
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 | Back alignment and structure |
|---|
| >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 | Back alignment and structure |
|---|
| >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 | Back alignment and structure |
|---|
| >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 | Back alignment and structure |
|---|
| >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 | Back alignment and structure |
|---|
| >3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Length = 131 | Back alignment and structure |
|---|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 | Back alignment and structure |
|---|
| >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 | Back alignment and structure |
|---|
| >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 | Back alignment and structure |
|---|
| >3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A Length = 203 | Back alignment and structure |
|---|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1030 | ||||
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 4e-38 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 5e-32 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 8e-21 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-13 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-11 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 8e-21 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 6e-05 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 5e-04 | |
| d1dvpa2 | 72 | g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me | 1e-17 | |
| d1joca1 | 64 | g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) | 1e-16 | |
| d1vfya_ | 67 | g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch | 2e-16 | |
| d1wfka_ | 88 | g.50.1.1 (A:) Zinc finger FYVE domain containing p | 3e-16 | |
| d1maia_ | 119 | b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus | 3e-13 | |
| d1y02a2 | 51 | g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro | 4e-13 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 1e-11 | |
| d2zkmx3 | 131 | b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human | 1e-10 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 145 bits (365), Expect = 4e-38
Identities = 98/412 (23%), Positives = 166/412 (40%), Gaps = 47/412 (11%)
Query: 220 DVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTK 279
V+ G+G G + + ++ P L+ DV G H ++K
Sbjct: 16 LVLTLGQGD---------VGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSK 64
Query: 280 EGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWG 339
G+V+ +G +G LG +++ S + V VS G+ T ALT G ++ WG
Sbjct: 65 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124
Query: 340 HNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFG 399
++G + V V KVA G H +++ G L+T G G G
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQ--LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182
Query: 400 VLGHGNLQNVSQP----------------KEVESLRGLKVKSVACGPWHTAAIVDIMVDR 443
LG ++ K S ++ + CG + T AI
Sbjct: 183 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI------- 235
Query: 444 CKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFD--FVQASCGRMLTVGLTG 501
+ G ++ +G ++ +LG E +P +T + +V S G+ TV +
Sbjct: 236 ----SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDS 291
Query: 502 LGKVYTMGSAVHGQLGNPK-AKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTW 560
GK Y++G A +G+LG + A+++SI + +L V ++ G+ +T G V+ W
Sbjct: 292 EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAW 349
Query: 561 GKNANGQLGLGDSQERETPTFV--EALRDRQVESVVCGSSITAAICLHKSIS 610
G N QLG G ++ +P + + L +R V SV G T + K S
Sbjct: 350 GMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS 401
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 131 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1030 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1maia_ | 119 | Phospholipase C delta-1 {Rat (Rattus norvegicus) [ | 99.44 | |
| d2zkmx3 | 131 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.38 | |
| d1joca1 | 64 | Eea1 {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d1dvpa2 | 72 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 98.88 | |
| d1wfka_ | 88 | Zinc finger FYVE domain containing protein 19 {Mou | 98.87 | |
| d1vfya_ | 67 | vps27p protein {Baker's yeast (Saccharomyces cerev | 98.77 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.4 | |
| d1y02a2 | 51 | Rififylin (FYVE-RING finger protein Sakura) {Human | 98.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.57 | |
| d1zbdb_ | 124 | Effector domain of rabphilin-3a {Rat (Rattus norve | 97.55 | |
| d1btka_ | 169 | Bruton's tyrosine kinase {Human (Homo sapiens) [Ta | 95.59 | |
| d1v5ua_ | 117 | SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ | 93.98 | |
| d1faoa_ | 100 | Dual adaptor of phosphotyrosine and 3-phosphoinosi | 92.8 | |
| d1u5fa1 | 111 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 91.45 | |
| d1u5da1 | 106 | Src kinase-associated phosphoprotein SKAP55 (SCAP1 | 90.54 | |
| d1u5ea1 | 209 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 90.33 | |
| d1x1fa1 | 136 | Signal-transducing adaptor protein 1, STAP-1 {Huma | 89.9 | |
| d2adza1 | 105 | Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1 | 89.49 | |
| d1v5ma_ | 136 | SH2 and PH domain-containing adapter protein APS { | 88.93 | |
| d1wg7a_ | 150 | Dedicator of cytokinesis protein 9, DOCK9 {Human ( | 88.67 | |
| d1eaza_ | 103 | Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | 88.51 | |
| d2coda1 | 102 | Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 | 86.75 | |
| d1wjma_ | 123 | beta-spectrin {Human (Homo sapiens), brain 2 isofo | 84.87 | |
| d2elba2 | 101 | DCC-interacting protein 13-alpha, APPL1 {Human (Ho | 84.45 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=470.52 Aligned_cols=370 Identities=26% Similarity=0.377 Sum_probs=315.0
Q ss_pred CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCEEEEEECCC
Q ss_conf 05854689949998489999946899989855676531234746622336899799996598799998099199996699
Q 001683 211 LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGK 290 (1030)
Q Consensus 211 ~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~Ns 290 (1030)
|.++++.+|+||+||.|. .||||.|... .+...|.+|+.+. +|++|+||..|+++|+.+|+||+||.|.
T Consensus 7 h~~~~~~~G~vy~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~ 75 (401)
T d1a12a_ 7 HRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCND 75 (401)
T ss_dssp CTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEEEECCCCEEEEEECCC-CCCCCCCCCC--------CEECCCEEECCCC--CEEEEEECCCEEEEEECCCEEEEEECCC
T ss_conf 789997898899996999-8888999988--------6503577908999--9299991898899996799899995899
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEECEEEECCCCCCC
Q ss_conf 99678789966445579321599949999807983899940897999268999998668888863110013202689962
Q 001683 291 DGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVR 370 (1030)
Q Consensus 291 ~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~G~LG~g~~~~~~~P~~i~~~l~~~~ 370 (1030)
+||||++...+...|.++......+|++|+||..|+++++++|.||+||.+.+.+++++.........+.... .....
T Consensus 76 ~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 153 (401)
T d1a12a_ 76 EGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVP 153 (401)
T ss_dssp TSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEE--CCCCC
T ss_conf 9887744655664235542354220022011100101000345311202145655544666775431001100--16885
Q ss_pred EEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCC-----------CCCCEEEE-----ECCCCEEEEEEECCCEEE
Q ss_conf 99999698805999518949997169985557889878-----------67772753-----027984999971597389
Q 001683 371 VSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQN-----------VSQPKEVE-----SLRGLKVKSVACGPWHTA 434 (1030)
Q Consensus 371 Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~-----------~~~P~~V~-----~l~g~~I~~IAcG~~Ht~ 434 (1030)
|+.|+||..|+++++.+|++|+||.|.+||||++.... ...|..+. .....+|.+|+||..|++
T Consensus 154 i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~ 233 (401)
T d1a12a_ 154 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF 233 (401)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEE
T ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEEE
T ss_conf 06998203522565037850034668766228887534456775554433565200003567777843999993687699
Q ss_pred EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCC--CCEEEEEECCCEEEEEECCCEEEEEECCC
Q ss_conf 9995001234444569929999569999767879974232068510245--74599983564349994798199981898
Q 001683 435 AIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVD--FDFVQASCGRMLTVGLTGLGKVYTMGSAV 512 (1030)
Q Consensus 435 aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~--~~I~qIa~G~~htvaLT~dG~Vy~wG~N~ 512 (1030)
+|+ .+|++|+||.|.++++|.........+..+..+.. ..++++++|..|+++|+.+|.||+||.|.
T Consensus 234 ~l~-----------~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~ 302 (401)
T d1a12a_ 234 AIS-----------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAE 302 (401)
T ss_dssp EEE-----------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCG
T ss_pred EEE-----------CCCEEEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCC
T ss_conf 995-----------598186512221020354566310000010123554036999851012013561489788840334
Q ss_pred CCCCCCCCCCCC--CEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECC--CCCC
Q ss_conf 898899999886--016995345564179998478711688249829999379999999999987520036412--3577
Q 001683 513 HGQLGNPKAKDR--SITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEA--LRDR 588 (1030)
Q Consensus 513 ~GQLG~g~~~~~--~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~Pt~V~~--l~~~ 588 (1030)
+||||.+..... .|..+.. ...|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|++|.. +.+.
T Consensus 303 ~gqlG~g~~~~~~~~P~~i~~---~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~ 379 (401)
T d1a12a_ 303 YGRLGLGEGAEEKSIPTLISR---LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENR 379 (401)
T ss_dssp GGTTCSCTTCCCEEEEEECCS---SSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTE
T ss_pred CCCCCCCCCCCCCCCCEECCC---CCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCC
T ss_conf 675678862333558888579---99829999308879999489969999259988778999988860789643578998
Q ss_pred EEEEEEECCCCCCEEEECC
Q ss_conf 2577420588531131024
Q 001683 589 QVESVVCGSSITAAICLHK 607 (1030)
Q Consensus 589 ~V~~IacG~~hT~aI~~~k 607 (1030)
.|.+|+||.+||++|+.++
T Consensus 380 ~v~~v~~G~~hs~~l~~d~ 398 (401)
T d1a12a_ 380 VVLSVSSGGQHTVLLVKDK 398 (401)
T ss_dssp EEEEEEECSSEEEEEEEEC
T ss_pred EEEEEEECCCEEEEEEECC
T ss_conf 8999997524399999799
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|