Citrus Sinensis ID: 001722

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020
MFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPKKFGL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccHHHcHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEccccccccccccHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEccHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccEEEEccccccccEEEccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHcccccccccEEEEEEcHHHHccccccEEEEEcccccccccccccccccEEEEEEccHHHHccccccccccccccEEEcccHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccEEEcccccEEEEccccccccccccccEEEEEHHHcccccccHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHcccEcHccccccccccccccEEEEEEccccccccccEEEcccccccEEEcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEccccHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEHccccHHHHHHHcccccccccEEEEEEEEEEEEEEEccEEEEEccccEEEEEccccccccEEEEcEccHHHHHHccccccccccccEEEEEEHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHccccEEEcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEccccHHHcccccccEEEEEEEEEEcHHHHHHEEcccHHHHHHHccHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccccccccccccc
mfvgaspdarlvsplstprsngyaaspwdhispspvpirasgssvkssssgysrrshqltfsressqsfedgvadetyseehnyEITESMRLEmeynsdrawydreegttmfdtdsssfilgddasyQKKEVELAKRLVrkdgsrmslaQSKKLSQITADNHQWEERQLLRsgavrgtelstefddeeEHKVILLVhdtkppfldgrivftkqaepvmpikdptsdmaiISRKGSALVREIREKQTQNKSRQRFWELAGSqmgnilgvkktaeqvdadtavvgeqgeidfredakfsqhmkkgeavsdfaksktLAEQRQYLPIFSVRDELLQVIRENQVVVVVGetgsgkttQLTQYLLedgyttngivgctqPRRVAAMSVAKRVSEEMDTELGDKVGYAIRfedvtgpstlIKYMTDGVLLretlkdsdldkYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLnaqkfsdffgsvpifhipgrtfpvntlysktpceDYVEAAVKQAMTIhitsppgdiliFMTGQDEIEAACFALKERMEQLISSTtrevpellilpiysqLPADLQAKIFEKAKEGTRKCIVATniaetsltvdgIFYVIDTgygkmkvynpkmgmdalqvfpvsraaadqragragrtgpgtcyRLYTESAylnemlpspvpeiqrtnlGNVVLLLKSLkidnlldfdfmdpppqenilnSMYQLWVLGALnnvgaltdlgwkmvefpldpplaKMLLMGEQLGCLDEVLTIVSMlsvpsvffrpkdraeesDAAREKFFVQESDHLTLLYVYQQWKehqyrgdwceeHYLHVKSLRKAREVRSQLLDILKTLkipltssghdfdVVRKAICSAYFHNAArlkgvgeyincrngmpchlhpssaiyglgytpeyVVYHELILTTKEYMQCATavepqwlselgpmffsvkdsdtsmlehkKKQKESKTAMEEEMENLRKIQADEERENKAKEREKRVKERQqvsmpgwrqgsttylrpkkfgl
mfvgaspdarlvsplSTPRSNGYaaspwdhispspvpirasgssvkssssgysrrshqltfsressqsfedgvadetyseehnyeitesmrlemEYNSDRAWYDREEGTtmfdtdsssfilgddasyqKKEVELAKRlvrkdgsrmslaqskklsqitadnhQWEERQLLRSGAVRGTELstefddeeeHKVILLvhdtkppfldGRIVFTkqaepvmpikdptsdmaiISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVvgetgsgkttqLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRvseemdtelgdkvgyairfedvtgpstlikYMTDGVLLretlkdsdldKYRVIVMdeaherslstdvLFGILKKVVARRRDFKLIVTSatlnaqkfsDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVatniaetsltvdgIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADqragragrtgpgtcYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTlkipltssghdfDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKkkqkesktaMEEEMENLrkiqadeerenkakerekrvkerqqvsmpgwrqgsttylrpkkfgl
MFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRAsgssvkssssgysrrsHQLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQvvvvvGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSraaadqragragrtgpgtCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVlllkslkidnlldFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQADeerenkakerekrvkerQQVSMPGWRQGSTTYLRPKKFGL
****************************************************************************************************AWY**************************************************************************************HKVILLVHDTKPPFLDGRIVFTKQA***************************************FWELAGSQMGNILGVKKTA**V***TAVV*********************************AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV****DTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA**********RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFR*************KFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSV**************************************************************************
************************************************************************************************NSDRAWYDREEG***********************************************************QLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVF*K**E****IKDPTSDMAIISR**************************************************************************************RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERM*********EVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVF*****************FVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFS**********************************************************************KKF**
MFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVP***************************************TYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA***********TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPK*********REKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDS**********************ENLRKIQAD************************WRQGSTTYLRPKKFGL
************************************************************************************EITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKR*********************ADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKS*************************************************************SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAA***********GPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDS***********************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSMPGWRQGSTTYLRPKKFGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1020 2.2.26 [Sep-21-2011]
Q17R091227 Pre-mRNA-splicing factor yes no 0.857 0.713 0.589 0.0
Q926201227 Pre-mRNA-splicing factor yes no 0.825 0.686 0.609 0.0
P344981131 Probable pre-mRNA-splicin yes no 0.905 0.816 0.558 0.0
Q9P7741173 Pre-mRNA-splicing factor yes no 0.917 0.797 0.5 0.0
Q54F051160 ATP-dependent RNA helicas no no 0.767 0.675 0.479 0.0
Q145621220 ATP-dependent RNA helicas no no 0.771 0.645 0.488 0.0
A2A4P01244 ATP-dependent RNA helicas no no 0.771 0.632 0.488 0.0
Q389531168 Probable pre-mRNA-splicin no no 0.806 0.704 0.462 0.0
Q095301200 Probable pre-mRNA-splicin no no 0.774 0.658 0.483 0.0
O426431168 Pre-mRNA-splicing factor no no 0.755 0.660 0.457 0.0
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1 Back     alignment and function desciption
 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/903 (58%), Positives = 696/903 (77%), Gaps = 28/903 (3%)

Query: 58   QLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSS 117
            +L+  R   +  E+G++ +T  E   +E       + +  +DR WY  +EG   +D   +
Sbjct: 289  RLSRGRGRREDGEEGISFDTEEERQQWE-------DDQRQADRDWYMMDEG---YDEFHN 338

Query: 118  SFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRG 177
                  D   +++E  L K+  ++         S +  QI  DN +WE  ++L SG V  
Sbjct: 339  PLAYSSDDYVRRREQHLHKQKQKR--------ISAQRRQINEDNERWETNRMLTSGVVHR 390

Query: 178  TELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSAL 237
             E+  +F+++   KV L+VH+  PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS  
Sbjct: 391  LEVDEDFEEDSAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQT 450

Query: 238  VREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFS 297
            VR+ RE++ + K++ + WELAG+++G+I+GVKK  E    D ++  E G++D+R + KF+
Sbjct: 451  VRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEE---PDKSLT-EDGKVDYRTEQKFA 506

Query: 298  QHMKK-GEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLT 356
             HMKK  EA S+FAK K++ EQRQYLPIF+V+ ELL +IR+N +V+VVGETGSGKTTQLT
Sbjct: 507  DHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLT 566

Query: 357  QYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416
            QYL EDGYT  G++GCTQPRRVAAMSVAKRVSEEM   LG++VGYAIRFED T  STLIK
Sbjct: 567  QYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIK 626

Query: 417  YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476
            YMTDG+LLRE+L+++DLD Y  I+MDEAHERSL+TDVLFG+L++VVARR D KLIVTSAT
Sbjct: 627  YMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSAT 686

Query: 477  LNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 536
            ++A+KF+ FFG+VPIFHIPGRTFPV+ L+SKTP EDYVEAAVKQ++ +H++  PGDILIF
Sbjct: 687  MDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIF 746

Query: 537  MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKC 596
            M GQ++IE     + E +E+L        P L +LPIYSQLP+DLQAKIF+KA +G RKC
Sbjct: 747  MPGQEDIEVTSDQIVEHLEEL-----ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKC 801

Query: 597  IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG 656
            IVATNIAETSLTVDGI +VID+GY K+KV+NP++GMDALQ++P+S+A A+QR+GRAGRTG
Sbjct: 802  IVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTG 861

Query: 657  PGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENIL 716
            PG C+RLYT+SAY NE+L + VPEIQRTNL NVVLLLKSL + +LL F FMDPPP++N+L
Sbjct: 862  PGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNML 921

Query: 717  NSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVP 776
            NSMYQLW+LGAL+N G LT  G  MVEFPLDP L+KML++   +GC  E+L IVSMLSVP
Sbjct: 922  NSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVP 981

Query: 777  SVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKA 836
            ++F+RPK R EESD  REKF V ESDHL+ L VY QWK + Y   WC +H++H K++RK 
Sbjct: 982  AIFYRPKGREEESDQIREKFAVPESDHLSYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKV 1041

Query: 837  REVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHL 896
            REVR+QL DI+   ++ L S G D+D+VRK IC+AYFH AA+LKG+GEY+N R GMPCHL
Sbjct: 1042 REVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHL 1101

Query: 897  HPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEH 956
            HP+S+++G+GYTP+Y+VYHEL++TTKEYMQC TAV+ +WL+ELGPMF+SVK +  S  E+
Sbjct: 1102 HPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQEN 1161

Query: 957  KKK 959
            +++
Sbjct: 1162 RRR 1164
Probable ATP-binding RNA helicase involved in pre-mRNA splicing.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2 Back     alignment and function description
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp16 PE=3 SV=2 Back     alignment and function description
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1 Back     alignment and function description
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1 Back     alignment and function description
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1 Back     alignment and function description
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2 Back     alignment and function description
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1 Back     alignment and function description
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp22 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1020
255572389 1269 ATP-dependent RNA helicase, putative [Ri 1.0 0.803 0.881 0.0
357454387 1269 Pre-mRNA-splicing factor ATP-dependent R 1.0 0.803 0.856 0.0
449462491 1298 PREDICTED: pre-mRNA-splicing factor ATP- 1.0 0.785 0.857 0.0
449521509 1178 PREDICTED: pre-mRNA-splicing factor ATP- 1.0 0.865 0.857 0.0
359473576 1289 PREDICTED: pre-mRNA-splicing factor ATP- 0.998 0.789 0.861 0.0
356547300 1270 PREDICTED: pre-mRNA-splicing factor ATP- 0.999 0.802 0.861 0.0
356557396 1272 PREDICTED: pre-mRNA-splicing factor ATP- 0.999 0.801 0.856 0.0
334187649 1255 pre-mRNA-splicing factor ATP-dependent R 0.998 0.811 0.835 0.0
312282163 1255 unnamed protein product [Thellungiella h 0.998 0.811 0.841 0.0
7630057 1226 pre-mRNA splicing factor ATP-dependent R 0.994 0.827 0.833 0.0
>gi|255572389|ref|XP_002527133.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223533556|gb|EEF35296.1| ATP-dependent RNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1838 bits (4762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1024 (88%), Positives = 972/1024 (94%), Gaps = 4/1024 (0%)

Query: 1    MFVGASPDARLVSPL---STPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSH 57
            MFVGASPDARLVSP     TP S G AASPWDHI+PSPVPIRASGSS KSS S +  RSH
Sbjct: 246  MFVGASPDARLVSPWLGGHTPSSTGSAASPWDHIAPSPVPIRASGSSAKSSGSRHGERSH 305

Query: 58   QLTFSRESSQSFEDGVADETY-SEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDS 116
            QLTFS  SS+  E    D+ Y SEEH++EITE+MRLEMEYNSDRAWYDREEG+TMFD DS
Sbjct: 306  QLTFSSTSSRPLEGEREDKPYTSEEHHHEITENMRLEMEYNSDRAWYDREEGSTMFDADS 365

Query: 117  SSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVR 176
            SSF LGD+AS+QKKE ELAKRLVR+DGSRM+LAQSK+LSQ+TADN QWE+RQLLRSGAVR
Sbjct: 366  SSFYLGDEASFQKKEAELAKRLVRRDGSRMTLAQSKRLSQLTADNAQWEDRQLLRSGAVR 425

Query: 177  GTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSA 236
            GTE+ TEFDDE+E KVILLVHDTKPPFLDGR+VFTKQAEP+MPIKDPTSDMAIISRKGSA
Sbjct: 426  GTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSA 485

Query: 237  LVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKF 296
            LVREI EKQ+ NKSRQRFWELAGS++G+ILGV+KTAEQ+DADTAVVGE+GE+DF+EDAKF
Sbjct: 486  LVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAVVGEEGEVDFKEDAKF 545

Query: 297  SQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLT 356
            SQH+KK EAVSDFAKSKTLAEQRQYLPI+SVRD+LLQV+RENQVVVVVGETGSGKTTQLT
Sbjct: 546  SQHLKKEEAVSDFAKSKTLAEQRQYLPIYSVRDDLLQVVRENQVVVVVGETGSGKTTQLT 605

Query: 357  QYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416
            QYL EDGYT NGIVGCTQPRRVAAMSVAKRVSEEM+TELG+KVGYAIRFEDVTGP+T+IK
Sbjct: 606  QYLDEDGYTRNGIVGCTQPRRVAAMSVAKRVSEEMETELGNKVGYAIRFEDVTGPNTIIK 665

Query: 417  YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476
            YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA+RRDFKLIVTSAT
Sbjct: 666  YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSAT 725

Query: 477  LNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 536
            LNA+KFS+FFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF
Sbjct: 726  LNAEKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 785

Query: 537  MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKC 596
            MTGQDEIEAAC+AL ER+EQLISST + VP+LLILPIYSQLPADLQAKIF+KA++G RKC
Sbjct: 786  MTGQDEIEAACYALAERIEQLISSTKKAVPKLLILPIYSQLPADLQAKIFQKAEDGARKC 845

Query: 597  IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG 656
            IVATNIAETSLTVDGIFYVIDTGYGKMKVYNP+MGMDALQVFPVSRAAADQRAGRAGRTG
Sbjct: 846  IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTG 905

Query: 657  PGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENIL 716
            PGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQ+NIL
Sbjct: 906  PGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQDNIL 965

Query: 717  NSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVP 776
            NSMYQLWVLGALNNVG LTDLGWKMVEFPLDPPLAKMLLMGE+LGCL+EVLTIVSMLSVP
Sbjct: 966  NSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGEELGCLNEVLTIVSMLSVP 1025

Query: 777  SVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKA 836
            SVFFRPKDRAE+SDAAREKFFV ESDHLTLL VY QWKEHQYRGDWC +H+LHVK LRKA
Sbjct: 1026 SVFFRPKDRAEQSDAAREKFFVPESDHLTLLNVYLQWKEHQYRGDWCNDHFLHVKGLRKA 1085

Query: 837  REVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHL 896
            REVRSQLLDILKTLKIPLTS GHD+DV+RKAICSAYFHNAARLKGVGEY+NCRNGMPCHL
Sbjct: 1086 REVRSQLLDILKTLKIPLTSCGHDWDVIRKAICSAYFHNAARLKGVGEYVNCRNGMPCHL 1145

Query: 897  HPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEH 956
            HPSSA+YGLGYTPEYVVYHELILTTKEYMQCAT+VEPQWL+ELGPMFFSVK+SDTSMLEH
Sbjct: 1146 HPSSALYGLGYTPEYVVYHELILTTKEYMQCATSVEPQWLAELGPMFFSVKESDTSMLEH 1205

Query: 957  KKKQKESKTAMEEEMENLRKIQADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPK 1016
            KK+QKE KTAMEEEMENLRK QA+ ERE+K +E++KR K++QQVS PG RQGS+TYLRPK
Sbjct: 1206 KKRQKEEKTAMEEEMENLRKEQAEAERESKEREKQKRAKQQQQVSTPGLRQGSSTYLRPK 1265

Query: 1017 KFGL 1020
            KFGL
Sbjct: 1266 KFGL 1269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357454387|ref|XP_003597474.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago truncatula] gi|355486522|gb|AES67725.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449462491|ref|XP_004148974.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449521509|ref|XP_004167772.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|359473576|ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547300|ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max] Back     alignment and taxonomy information
>gi|356557396|ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max] Back     alignment and taxonomy information
>gi|334187649|ref|NP_196805.2| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Arabidopsis thaliana] gi|332004458|gb|AED91841.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282163|dbj|BAJ33947.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|7630057|emb|CAB88265.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1020
UNIPROTKB|Q926201227 DHX38 "Pre-mRNA-splicing facto 0.897 0.745 0.559 1.6e-281
UNIPROTKB|E2RC561226 DHX38 "Uncharacterized protein 0.897 0.746 0.556 4.2e-281
RGD|13103451228 Dhx38 "DEAH (Asp-Glu-Ala-His) 0.897 0.745 0.556 5.4e-281
ZFIN|ZDB-GENE-040426-11441258 dhx38 "DEAH (Asp-Glu-Ala-His) 0.891 0.722 0.563 7.3e-281
UNIPROTKB|Q17R091227 DHX38 "Pre-mRNA-splicing facto 0.854 0.710 0.575 1.8e-277
FB|FBgn00267131222 l(1)G0007 "lethal (1) G0007" [ 0.895 0.747 0.552 2.7e-274
DICTYBASE|DDB_G02858431387 helD "putative RNA splicing fa 0.881 0.648 0.547 1.3e-272
UNIPROTKB|F1MVJ11226 DHX38 "Pre-mRNA-splicing facto 0.853 0.710 0.567 1.8e-270
WB|WBGene000033891131 mog-1 [Caenorhabditis elegans 0.870 0.785 0.555 4.3e-267
UNIPROTKB|P344981131 mog-1 "Probable pre-mRNA-splic 0.870 0.785 0.555 4.3e-267
UNIPROTKB|Q92620 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 2673 (946.0 bits), Expect = 1.6e-281, Sum P(2) = 1.6e-281
 Identities = 525/939 (55%), Positives = 677/939 (72%)

Query:    87 TESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKE-VELAKRLVRKDGSR 145
             TE  R + E   D+   DR+    M D     F   +  +Y  ++ V   ++ + K   +
Sbjct:   308 TEEERQQWE--DDQRQADRD--WYMMDEGYDEF--HNPLAYSSEDYVRRREQHLHKQKQK 361

Query:   146 MSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLD 205
                AQ +   QI  DN +WE  ++L SG V   E+  +F+++   KV L+VH+  PPFLD
Sbjct:   362 RISAQRR---QINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLD 418

Query:   206 GRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNI 265
             GRIVFTKQ EPV+P+KD TSD+AII+RKGS  VR+ RE++ + K++ + WELAG+++G+I
Sbjct:   419 GRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDI 478

Query:   266 LGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMK-KGEAVSDFAKSKTLAEQRQYLPI 324
             +GVKK  E    D AV  E G++D+R + KF+ HMK K EA S+FAK K++ EQRQYLPI
Sbjct:   479 MGVKKEEEP---DKAVT-EDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPI 534

Query:   325 FSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVA 384
             F+V+ ELL +IR+N      GETGSGKTTQLTQYL EDGYT  G++GCTQPRRVAAMSVA
Sbjct:   535 FAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVA 594

Query:   385 KRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEA 444
             KRVSEEM   LG++VGYAIRFED T  +TLIKYMTDG+LLRE+L+++DLD Y  I+MDEA
Sbjct:   595 KRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEA 654

Query:   445 HERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTL 504
             HERSL+TDVLFG+L++VVARR D KLIVTSAT++A+KF+ FFG+VPIFHIPGRTFPV+ L
Sbjct:   655 HERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDIL 714

Query:   505 YSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTRE 564
             +SKTP EDYVEAAVKQ++ +H++  PGDILIFM GQ++IE     + E +E+L       
Sbjct:   715 FSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-----EN 769

Query:   565 VPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624
              P L +LPIYSQLP+DLQAKIF+KA +G RKCIVATNIAETSLTVDGI +VID+GY K+K
Sbjct:   770 APALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLK 829

Query:   625 VYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRT 684
             V+NP++GMDALQ++P+S                  C+RLYT+SAY NE+L + VPEIQRT
Sbjct:   830 VFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRT 889

Query:   685 NLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEF 744
             NL NVV             F FMDPPP++N+LNSMYQLW+LGAL+N G LT  G  MVEF
Sbjct:   890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEF 949

Query:   745 PLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHL 804
             PLDP L+KML++   +GC  E+L IVSMLSVP++F+RPK R EESD  REKF V ESDHL
Sbjct:   950 PLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHL 1009

Query:   805 TLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVV 864
             T L VY QWK + Y   WC +H++H K++RK REVR+QL DI+   ++ L S G D+D+V
Sbjct:  1010 TYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIV 1069

Query:   865 RKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEY 924
             RK IC+AYFH AA+LKG+GEY+N R GMPCHLHP+S+++G+GYTP+Y+VYHEL++TTKEY
Sbjct:  1070 RKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEY 1129

Query:   925 MQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQADXXXX 984
             MQC TAV+ +WL+ELGPMF+SVK +  S  E++++ KE  +AMEEEM  L + Q      
Sbjct:  1130 MQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMA-LAEEQLRARRQ 1188

Query:   985 XXXXXXXXXXXXXQQVSMPGWR-QGS--TTYLRPKKFGL 1020
                           ++  PG + QG   T    P +FGL
Sbjct:  1189 EQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL 1227
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS
GO:0005634 "nucleus" evidence=NAS
GO:0071013 "catalytic step 2 spliceosome" evidence=IDA
GO:0005654 "nucleoplasm" evidence=TAS
GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS
GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS
GO:0006406 "mRNA export from nucleus" evidence=TAS
GO:0008380 "RNA splicing" evidence=TAS
GO:0010467 "gene expression" evidence=TAS
GO:0031124 "mRNA 3'-end processing" evidence=TAS
UNIPROTKB|E2RC56 DHX38 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310345 Dhx38 "DEAH (Asp-Glu-Ala-His) box polypeptide 38" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1144 dhx38 "DEAH (Asp-Glu-Ala-His) box polypeptide 38" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q17R09 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0026713 l(1)G0007 "lethal (1) G0007" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285843 helD "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MVJ1 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00003389 mog-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34498 mog-1 "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q17R09PRP16_BOVIN3, ., 6, ., 4, ., 1, 30.58910.85780.7131yesno
P34498MOG1_CAEEL3, ., 6, ., 4, ., 1, 30.55850.90580.8169yesno
P15938PRP16_YEAST3, ., 6, ., 4, ., 1, 30.51540.69500.6619yesno
Q92620PRP16_HUMAN3, ., 6, ., 4, ., 1, 30.60950.82540.6862yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.914
3rd Layer3.6.40.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035046001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (1520 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
COG1643845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 0.0
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 1e-153
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 1e-139
TIGR01970 819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 5e-89
PRK11664 812 PRK11664, PRK11664, ATP-dependent RNA helicase Hrp 4e-73
pfam0440891 pfam04408, HA2, Helicase associated domain (HA2) 9e-40
pfam07717109 pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch 2e-34
smart0084782 smart00847, HA2, Helicase associated domain (HA2) 2e-30
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 5e-30
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 4e-26
PHA02653675 PHA02653, PHA02653, RNA helicase NPH-II; Provision 5e-19
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-13
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 1e-11
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 2e-11
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 2e-04
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 3e-04
COG1205851 COG1205, COG1205, Distinct helicase family with a 3e-04
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 0.001
pfam13401124 pfam13401, AAA_22, AAA domain 0.003
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  719 bits (1858), Expect = 0.0
 Identities = 283/702 (40%), Positives = 383/702 (54%), Gaps = 64/702 (9%)

Query: 305 AVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY 364
           A S  A    + E R  LP+ +VRDE+L+ I +NQVV++VGETGSGKTTQL Q+LLE+G 
Sbjct: 32  ARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL 91

Query: 365 TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLL 424
              G +GCTQPRR+AA SVA+RV+EE+  +LG+ VGY+IRFE    P T IK MTDG+LL
Sbjct: 92  GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILL 151

Query: 425 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFKLIVTSATLNAQKFS 483
           RE   D  L  Y V+++DEAHERSL+TD+L G+LK ++ARRR D KLI+ SATL+A++FS
Sbjct: 152 REIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFS 211

Query: 484 DFFGSVPIFHIPGRTFPVNTLYSKTPCEDY-VEAAVKQAMTIHITSPPGDILIFMTGQDE 542
            +FG+ P+  I GRT+PV   Y      DY +  A+  A+ IH+    G IL+F+ GQ E
Sbjct: 212 AYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271

Query: 543 IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNI 602
           IE     L++              +L ILP+Y  L A+ Q ++FE A  G RK ++ATNI
Sbjct: 272 IERTAEWLEKA---------ELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNI 322

Query: 603 AETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYR 662
           AETSLT+ GI YVID+G  K K Y+P+ G+  L+  P+S+A+ADQRAGRAGRTGPG CYR
Sbjct: 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYR 382

Query: 663 LYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKID-NLLDFDFMDPPPQENILNSMYQ 721
           LY+E  +L       +PEI RT+L  +VL LKSL I  ++  F F+DPPP+  I  ++  
Sbjct: 383 LYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTL 441

Query: 722 LWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVP---SV 778
           L  LGAL++ G LT LG +M   PLDP LA+MLL   + GCL E  TI SMLS     S 
Sbjct: 442 LQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESD 501

Query: 779 FFRP-------KDRAEESDAAREKFFVQESDHLTLLYVYQQWKE------HQYRGDWCEE 825
           F R          +       R        DHL LL  +              R + C  
Sbjct: 502 FSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRA 561

Query: 826 HYLHVKSLRKAREVRSQLL-DILKTLKIPLTSSGHD------------------FDVVRK 866
                K+L +A  + + LL          L ++  D                  +D +R 
Sbjct: 562 MLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRG 621

Query: 867 AICSAYFHNAARLKGVGE-YINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEY- 924
           A+ +    N A+L+  G  Y+   +  P   HPSS +       E++ Y E + T K Y 
Sbjct: 622 ALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSS-VRLGLVLLEWIKYAEFLRTRKGYL 680

Query: 925 ----------MQCATAVEPQWLSELGP---MFFSVKDSDTSM 953
                     +Q    +   WL E          +  +    
Sbjct: 681 REGRGERWPDVQTLIELLKLWLKEQVKGLRGLDGLTKAAMKQ 722

Length = 845
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) Back     alignment and domain information
>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold Back     alignment and domain information
>gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1020
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00110545 helicase; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
PRK13767 876 ATP-dependent helicase; Provisional 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.97
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.97
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.97
COG1201814 Lhr Lhr-like helicases [General function predictio 99.97
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.97
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.97
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.97
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.97
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.97
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.97
PRK106891147 transcription-repair coupling factor; Provisional 99.97
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.96
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.96
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.96
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.96
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.96
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.95
KOG0347731 consensus RNA helicase [RNA processing and modific 99.95
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.95
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.95
COG1205851 Distinct helicase family with a unique C-terminal 99.95
KOG0346569 consensus RNA helicase [RNA processing and modific 99.94
KOG0354746 consensus DEAD-box like helicase [General function 99.94
PHA02558501 uvsW UvsW helicase; Provisional 99.94
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.94
KOG0334997 consensus RNA helicase [RNA processing and modific 99.94
PRK13766773 Hef nuclease; Provisional 99.94
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.93
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.93
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.93
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.93
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.93
PRK09401 1176 reverse gyrase; Reviewed 99.92
KOG4284 980 consensus DEAD box protein [Transcription] 99.92
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.91
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.91
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.91
PRK14701 1638 reverse gyrase; Provisional 99.91
KOG0327397 consensus Translation initiation factor 4F, helica 99.9
PRK09694878 helicase Cas3; Provisional 99.9
PRK05580679 primosome assembly protein PriA; Validated 99.9
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.9
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.9
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.9
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.89
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.88
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.88
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.88
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 99.87
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.86
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.86
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.86
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.84
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 99.83
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.83
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.83
PF07717114 OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi 99.81
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.8
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.78
PRK04914956 ATP-dependent helicase HepA; Validated 99.77
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.77
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.75
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 99.73
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 99.7
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.69
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.67
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 99.65
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.65
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.64
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.63
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.62
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.62
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.6
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.57
COG4096875 HsdR Type I site-specific restriction-modification 99.55
smart00487201 DEXDc DEAD-like helicases superfamily. 99.49
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.48
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.47
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.47
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.47
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.46
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.44
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.44
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.42
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.38
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.36
PRK05298652 excinuclease ABC subunit B; Provisional 99.36
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.35
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.33
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.32
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.29
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.29
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.29
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.26
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.24
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.23
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.13
smart0049082 HELICc helicase superfamily c-terminal domain. 99.11
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.09
PRK14873665 primosome assembly protein PriA; Provisional 99.07
PF02399824 Herpes_ori_bp: Origin of replication binding prote 98.98
KOG1123776 consensus RNA polymerase II transcription initiati 98.97
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.92
KOG0387923 consensus Transcription-coupled repair protein CSB 98.85
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 98.77
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.77
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.76
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.62
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 98.6
COG4889 1518 Predicted helicase [General function prediction on 98.45
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 98.44
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 98.28
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 98.23
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.21
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.18
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.13
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.06
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 98.05
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.97
COG0610962 Type I site-specific restriction-modification syst 97.92
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 97.91
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 97.9
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 97.88
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 97.87
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.83
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 97.83
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.82
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.75
PF1324576 AAA_19: Part of AAA domain 97.73
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.69
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 97.69
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 97.66
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.64
PRK10536262 hypothetical protein; Provisional 97.64
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.63
KOG1803649 consensus DNA helicase [Replication, recombination 97.62
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.61
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.6
PRK06526254 transposase; Provisional 97.6
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.59
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 97.58
PRK14974336 cell division protein FtsY; Provisional 97.45
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.42
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 97.41
PRK04296190 thymidine kinase; Provisional 97.39
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 97.38
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 97.37
smart00382148 AAA ATPases associated with a variety of cellular 97.34
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 97.31
PF05729166 NACHT: NACHT domain 97.3
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 97.26
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.16
PRK08181269 transposase; Validated 97.15
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 97.14
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.14
PRK10416318 signal recognition particle-docking protein FtsY; 97.12
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.09
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 97.06
PRK07952244 DNA replication protein DnaC; Validated 96.98
PF13173128 AAA_14: AAA domain 96.96
PRK138261102 Dtr system oriT relaxase; Provisional 96.96
PRK15483 986 type III restriction-modification system StyLTI en 96.95
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.89
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.87
TIGR00064272 ftsY signal recognition particle-docking protein F 96.85
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.82
PHA03333752 putative ATPase subunit of terminase; Provisional 96.82
smart00488289 DEXDc2 DEAD-like helicases superfamily. 96.78
smart00489289 DEXDc3 DEAD-like helicases superfamily. 96.78
PRK09183259 transposase/IS protein; Provisional 96.74
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 96.74
PRK10867433 signal recognition particle protein; Provisional 96.66
PRK08727233 hypothetical protein; Validated 96.63
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.63
PRK08903227 DnaA regulatory inactivator Hda; Validated 96.59
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 96.57
TIGR00376637 DNA helicase, putative. The gene product may repre 96.56
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 96.53
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 96.51
PRK00771437 signal recognition particle protein Srp54; Provisi 96.49
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 96.49
TIGR00959428 ffh signal recognition particle protein. This mode 96.46
PRK06835329 DNA replication protein DnaC; Validated 96.46
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 96.43
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 96.42
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 96.41
PRK12402337 replication factor C small subunit 2; Reviewed 96.35
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 96.3
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 96.3
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 96.27
cd03115173 SRP The signal recognition particle (SRP) mediates 96.22
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 96.22
PRK06893229 DNA replication initiation factor; Validated 96.22
PRK08116268 hypothetical protein; Validated 96.21
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 96.18
PRK08084235 DNA replication initiation factor; Provisional 96.17
COG1484254 DnaC DNA replication protein [DNA replication, rec 96.15
PHA02533534 17 large terminase protein; Provisional 96.05
PRK12377248 putative replication protein; Provisional 96.05
PRK08939306 primosomal protein DnaI; Reviewed 96.03
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 96.02
PF00004132 AAA: ATPase family associated with various cellula 96.02
PRK09112351 DNA polymerase III subunit delta'; Validated 96.01
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 96.0
cd01124187 KaiC KaiC is a circadian clock protein primarily f 95.99
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 95.96
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 95.96
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 95.95
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 95.94
PRK05642234 DNA replication initiation factor; Validated 95.94
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 95.92
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 95.9
KOG2340698 consensus Uncharacterized conserved protein [Funct 95.89
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 95.87
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 95.87
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 95.87
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.84
PHA02544316 44 clamp loader, small subunit; Provisional 95.79
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 95.79
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 95.77
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 95.75
CHL00181287 cbbX CbbX; Provisional 95.71
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 95.71
COG0552340 FtsY Signal recognition particle GTPase [Intracell 95.7
PRK06921266 hypothetical protein; Provisional 95.69
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 95.67
PRK00411394 cdc6 cell division control protein 6; Reviewed 95.66
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 95.66
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 95.65
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 95.6
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 95.59
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 95.58
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 95.58
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 95.55
PRK04195482 replication factor C large subunit; Provisional 95.55
KOG1002791 consensus Nucleotide excision repair protein RAD16 95.55
KOG4439901 consensus RNA polymerase II transcription terminat 95.55
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 95.51
PRK00149450 dnaA chromosomal replication initiation protein; R 95.42
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 95.42
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 95.38
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 95.36
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 95.36
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 95.35
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 95.33
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 95.32
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 95.31
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 95.29
PRK11823446 DNA repair protein RadA; Provisional 95.28
PRK09087226 hypothetical protein; Validated 95.26
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 95.24
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 95.15
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.14
cd03246173 ABCC_Protease_Secretion This family represents the 95.13
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 95.13
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 95.1
cd03216163 ABC_Carb_Monos_I This family represents the domain 95.1
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 95.09
PRK06620214 hypothetical protein; Validated 95.06
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 95.06
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 95.05
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 95.02
PRK05707328 DNA polymerase III subunit delta'; Validated 94.99
PRK10865857 protein disaggregation chaperone; Provisional 94.97
PTZ00293211 thymidine kinase; Provisional 94.96
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 94.95
PRK14088440 dnaA chromosomal replication initiation protein; P 94.94
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 94.94
PRK06067234 flagellar accessory protein FlaH; Validated 94.91
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 94.9
TIGR00362405 DnaA chromosomal replication initiator protein Dna 94.85
TIGR02928365 orc1/cdc6 family replication initiation protein. M 94.82
PRK11054684 helD DNA helicase IV; Provisional 94.81
PLN03025319 replication factor C subunit; Provisional 94.81
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 94.81
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 94.78
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 94.74
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 94.74
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 94.73
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 94.71
PRK13833323 conjugal transfer protein TrbB; Provisional 94.7
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 94.68
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 94.68
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 94.66
PRK08533230 flagellar accessory protein FlaH; Reviewed 94.65
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 94.64
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 94.64
PHA03368738 DNA packaging terminase subunit 1; Provisional 94.64
PRK07471365 DNA polymerase III subunit delta'; Validated 94.56
PRK07940394 DNA polymerase III subunit delta'; Validated 94.54
PRK12422445 chromosomal replication initiation protein; Provis 94.48
PTZ001121164 origin recognition complex 1 protein; Provisional 94.47
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 94.46
cd03239178 ABC_SMC_head The structural maintenance of chromos 94.35
COG2256436 MGS1 ATPase related to the helicase subunit of the 94.31
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 94.31
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 94.31
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 94.3
PRK14087450 dnaA chromosomal replication initiation protein; P 94.26
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 94.25
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 94.24
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 94.22
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.18
cd01393226 recA_like RecA is a bacterial enzyme which has rol 94.18
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 94.15
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 94.14
PRK00440319 rfc replication factor C small subunit; Reviewed 94.13
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 94.1
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 94.1
PRK13851344 type IV secretion system protein VirB11; Provision 94.07
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 94.05
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 94.03
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 94.02
KOG18051100 consensus DNA replication helicase [Replication, r 94.02
COG0470325 HolB ATPase involved in DNA replication [DNA repli 93.99
KOG2228408 consensus Origin recognition complex, subunit 4 [R 93.97
PRK13894319 conjugal transfer ATPase TrbB; Provisional 93.97
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 93.96
TIGR02533486 type_II_gspE general secretory pathway protein E. 93.9
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 93.88
COG1122235 CbiO ABC-type cobalt transport system, ATPase comp 93.83
COG3587985 Restriction endonuclease [Defense mechanisms] 93.82
KOG2373514 consensus Predicted mitochondrial DNA helicase twi 93.81
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 93.8
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 93.76
PRK13342413 recombination factor protein RarA; Reviewed 93.75
KOG20361011 consensus Predicted P-loop ATPase fused to an acet 93.71
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 93.71
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 93.71
PRK04841 903 transcriptional regulator MalT; Provisional 93.7
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 93.65
COG1136226 SalX ABC-type antimicrobial peptide transport syst 93.62
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 93.56
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 93.49
PRK14086617 dnaA chromosomal replication initiation protein; P 93.48
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 93.45
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 93.37
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 93.37
PRK11331459 5-methylcytosine-specific restriction enzyme subun 93.35
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 93.33
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 93.3
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 93.28
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 93.25
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 93.15
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 93.15
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 93.14
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 93.03
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 93.03
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 93.02
COG3973747 Superfamily I DNA and RNA helicases [General funct 93.02
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 93.01
PF1355562 AAA_29: P-loop containing region of AAA domain 93.0
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 92.99
COG1119257 ModF ABC-type molybdenum transport system, ATPase 92.98
cd03215182 ABC_Carb_Monos_II This family represents domain II 92.97
PRK11773721 uvrD DNA-dependent helicase II; Provisional 92.96
COG1618179 Predicted nucleotide kinase [Nucleotide transport 92.96
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 92.93
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 92.88
PRK13695174 putative NTPase; Provisional 92.86
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 92.81
cd03227162 ABC_Class2 ABC-type Class 2 contains systems invol 92.8
PRK13341725 recombination factor protein RarA/unknown domain f 92.75
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 92.74
PF12846304 AAA_10: AAA-like domain 92.63
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 92.62
TIGR02688449 conserved hypothetical protein TIGR02688. Members 92.61
CHL00095821 clpC Clp protease ATP binding subunit 92.56
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 92.56
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 92.56
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 92.52
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 92.48
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 92.46
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 92.34
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 92.32
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 92.31
COG1127263 Ttg2A ABC-type transport system involved in resist 92.3
PRK06964342 DNA polymerase III subunit delta'; Validated 92.29
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 92.27
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 92.26
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 92.25
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 92.25
PRK13538204 cytochrome c biogenesis protein CcmA; Provisional 92.18
PRK08058329 DNA polymerase III subunit delta'; Validated 92.16
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 92.14
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 92.1
TIGR03375694 type_I_sec_LssB type I secretion system ATPase, Ls 92.08
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 92.06
TIGR02974329 phageshock_pspF psp operon transcriptional activat 92.02
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 92.02
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 91.96
TIGR01189198 ccmA heme ABC exporter, ATP-binding protein CcmA. 91.93
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 91.9
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 91.85
PRK10436462 hypothetical protein; Provisional 91.79
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 91.78
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 91.72
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 91.71
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 91.64
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 91.6
cd00983325 recA RecA is a bacterial enzyme which has roles in 91.59
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 91.57
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 91.57
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 91.55
CHL00176638 ftsH cell division protein; Validated 91.54
PRK08769319 DNA polymerase III subunit delta'; Validated 91.53
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 91.46
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 91.44
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 91.44
PRK07399314 DNA polymerase III subunit delta'; Validated 91.43
cd03300232 ABC_PotA_N PotA is an ABC-type transporter and the 91.43
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 91.37
PRK06871325 DNA polymerase III subunit delta'; Validated 91.32
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 91.28
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 91.28
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 91.25
PRK13657588 cyclic beta-1,2-glucan ABC transporter; Provisiona 91.23
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 91.2
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 91.19
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 91.18
PRK09354349 recA recombinase A; Provisional 91.17
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 91.16
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 91.14
PHA00729226 NTP-binding motif containing protein 91.12
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 91.02
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 91.01
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 90.96
cd03231201 ABC_CcmA_heme_exporter CcmA, the ATP-binding compo 90.95
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 90.95
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 90.94
KOG2028554 consensus ATPase related to the helicase subunit o 90.94
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 90.93
PRK05973237 replicative DNA helicase; Provisional 90.9
cd03248226 ABCC_TAP TAP, the Transporter Associated with Anti 90.89
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 90.81
PHA00149331 DNA encapsidation protein 90.81
PRK03992389 proteasome-activating nucleotidase; Provisional 90.79
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 90.76
COG0593408 DnaA ATPase involved in DNA replication initiation 90.67
TIGR01277213 thiQ thiamine ABC transporter, ATP-binding protein 90.63
cd03245220 ABCC_bacteriocin_exporters ABC-type bacteriocin ex 90.63
cd03251234 ABCC_MsbA MsbA is an essential ABC transporter, cl 90.59
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 90.56
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 90.55
PHA03311828 helicase-primase subunit BBLF4; Provisional 90.54
COG2255332 RuvB Holliday junction resolvasome, helicase subun 90.53
PRK13537306 nodulation ABC transporter NodI; Provisional 90.53
cd03254229 ABCC_Glucan_exporter_like Glucan exporter ATP-bind 90.52
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 90.47
TIGR02982220 heterocyst_DevA ABC exporter ATP-binding subunit, 90.46
cd03244221 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. 90.44
TIGR01192585 chvA glucan exporter ATP-binding protein. This mod 90.43
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 90.41
PRK04301317 radA DNA repair and recombination protein RadA; Va 90.41
cd03249238 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) 90.41
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 90.32
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-219  Score=1829.35  Aligned_cols=953  Identities=61%  Similarity=1.014  Sum_probs=858.6

Q ss_pred             ccCCCCC--CCCCCCCCCCCCCCCCCCCCCcCCCCCCcCCCCCCCCCcccCCCcCcCCCcccccCcccccccccCccccC
Q 001722           10 RLVSPLS--TPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEIT   87 (1020)
Q Consensus        10 ~~~~~~~--~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (1020)
                      ..++.|+  +..++.++.++|++|||+|+  ++..+..++.++. .+|++.+|..|+|      |..+++..+...+...
T Consensus        88 ~s~~~w~~~d~~d~~~~r~s~~~pspsp~--~~~~rr~d~~rs~-~~~~~~~~~~p~p------~~~~~~~~~~~~~~s~  158 (1042)
T KOG0924|consen   88 PSRDFWEQLDSEDNSSRRNSWVQPSPSPT--ERDRRRMDKPRSK-QSRQRSPTVDPSP------NSSDRSQNGHAPTDSR  158 (1042)
T ss_pred             cchhhhhhccccCCcccccCCCCCCCCCC--ccchhhhcchhhh-hhccCCCCCCCCC------chhhhhhcCCCCcccc
Confidence            5667898  33444556799998888874  1111112222221 2333444444444      2223332222222222


Q ss_pred             hHHHHHHhhhhhhhhccccCCCcccCCCCCCCCCCcchHHHHHHHHHHHHHhhhcCCccchhhhhhhhhhccCchHHHHH
Q 001722           88 ESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEER  167 (1020)
Q Consensus        88 ~~~~~~~~~~~dr~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~we~~  167 (1020)
                      +..+.|+ -+.||+|||+||+   +|+.++ ||...+     +|+++.++.+                .++.||+.||.|
T Consensus       159 ~~~~~ee-~eedR~WYdnde~---~d~~~n-pf~~~~-----~E~~l~~~~~----------------ki~~dn~~we~n  212 (1042)
T KOG0924|consen  159 EPTRSEE-GEEDREWYDNDEG---GDEVHN-PFSELS-----REAELLEKIQ----------------KINNDNALWETN  212 (1042)
T ss_pred             ccccccc-CccchhhhhcCCc---cccccC-chhcch-----hHHHHHHHHH----------------hhcchhhhhhhh
Confidence            2223222 1228999999998   555565 665533     6777765431                278999999999


Q ss_pred             HHHHcCCccccCCCCCcCccccceEEEEecCCCCCCcCccccccccCCCccCCCCCCChHHHHHHhCChhhHHHHHHHHH
Q 001722          168 QLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQ  247 (1020)
Q Consensus       168 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~  247 (1020)
                      ||++|||+.+.+++.||.++++.+  ++||+++||||+|+.+++++.+||.||+||++|+|+.|++||.+|+++|+++++
T Consensus       213 rl~~sgvv~~~e~~~~f~~~e~~~--llv~~i~~~fld~r~~~~k~~~~v~pv~d~~sd~a~~a~~gs~lv~~~r~~~~~  290 (1042)
T KOG0924|consen  213 RLLTSGVVQRMEVISDFLSDEARE--LLVHNIVPPFLDGREVFTKQAEPVIPVRDPTSDLAISARRGSKLVRERREKEER  290 (1042)
T ss_pred             cccchhhhhcccccCccchhhHHH--hhhhcccCCccccceeeecccccccccCCCchhhhhhhhccccHHHHHHHhhhh
Confidence            999999999999999998887776  899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHhhhccccccccccccccccccccccccCccCccccccchhhhhhhhcccccchhhhhHHHHHHHcCCCcHHH
Q 001722          248 NKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSV  327 (1020)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~LPi~~~  327 (1020)
                      ++..+.+|++++++|||++|+++..+          +++.++++...+|+.|+++.++.+.|+..+.+.+||+.||||.+
T Consensus       291 ~k~~~~~~~~~~~~lgn~~glek~~~----------ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq~LPvf~~  360 (1042)
T KOG0924|consen  291 KKAQKKHWKLAGTALGNVMGLEKKND----------EDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQYLPVFAC  360 (1042)
T ss_pred             hhhhhhhhhhcchhhccccccccCcc----------cccccccccchhhhhccccccccccccccchHHHHHhhcchHHH
Confidence            99999999999999999999987653          45677888888999999988888999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeee
Q 001722          328 RDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED  407 (1020)
Q Consensus       328 q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~  407 (1020)
                      +++++..|..|++|||+|+||||||||++|||++++|..+|.|+||||||++|++||+||++||+..+|..|||+|||++
T Consensus       361 R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEd  440 (1042)
T KOG0924|consen  361 RDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFED  440 (1042)
T ss_pred             HHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHhC
Q 001722          408 VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFG  487 (1020)
Q Consensus       408 ~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f~  487 (1020)
                      ++++.|.|+|||+|+|||+.+.|..|.+|++|||||||||++++|+|+++||.++++|.++|+|++|||||+++|++|||
T Consensus       441 vT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFg  520 (1042)
T KOG0924|consen  441 VTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFG  520 (1042)
T ss_pred             cCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001722          488 SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPE  567 (1020)
Q Consensus       488 ~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~  567 (1020)
                      +||.|+||||+|||++.|.+.|++||++++++++++||...++|+||||++|+++|+.+|..+.+.+.++....   ..+
T Consensus       521 n~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~---~~~  597 (1042)
T KOG0924|consen  521 NCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP---TTD  597 (1042)
T ss_pred             CCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC---CCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998874322   248


Q ss_pred             eEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHH
Q 001722          568 LLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQ  647 (1020)
Q Consensus       568 l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~Q  647 (1020)
                      +.|+|+||+||.+.|.+||+..+.|.+||||||||||||||||||.|||||||+|.++|||+.||++|+++|||+|++.|
T Consensus       598 L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q  677 (1042)
T KOG0924|consen  598 LAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ  677 (1042)
T ss_pred             eEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcC
Q 001722          648 RAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGA  727 (1020)
Q Consensus       648 RaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dpP~~~~i~~al~~L~~lga  727 (1020)
                      |+|||||+|||.||||||+..|.++|.+.++|||+|+||.++||+||++|+++++.|+||||||.+.+..||+.||.|||
T Consensus       678 RaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGA  757 (1042)
T KOG0924|consen  678 RAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGA  757 (1042)
T ss_pred             hccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHHHHHHHhhhccCCCcHHHHH
Q 001722          728 LNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLL  807 (1020)
Q Consensus       728 Ld~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~~sDhltll  807 (1020)
                      ||+.|.||++|+.|++|||||.|+||||.|+.+||++|||+||||||++.+|++|+++.++++++|++|++++|||||||
T Consensus       758 l~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlL  837 (1042)
T KOG0924|consen  758 LDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLL  837 (1042)
T ss_pred             cccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhhccchhhhhcCCceeEE
Q 001722          808 YVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYIN  887 (1020)
Q Consensus       808 ~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~  887 (1020)
                      |||++|++++++..||++|||+.++|++|+++|.||+.||+.+++|+.|| .+||+|+||||+|||+|+|++++.|.|++
T Consensus       838 NVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~  916 (1042)
T KOG0924|consen  838 NVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVN  916 (1042)
T ss_pred             HHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEE
Confidence            99999999999999999999999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             ecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHHhhCCcceeecCCcchhHHhhhhhhhhHHHH
Q 001722          888 CRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAM  967 (1020)
Q Consensus       888 ~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  967 (1020)
                      +++|.+|+|||||+|+++ +.|+||||||+++|+|+||+|||+|+|+||+|+||+||++++...+  +++...+++...|
T Consensus       917 ~~tg~~c~lHPsS~L~g~-y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~s--e~k~~~~ed~~~~  993 (1042)
T KOG0924|consen  917 LSTGIPCHLHPSSVLHGL-YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTS--EHKHPVVEDGSDM  993 (1042)
T ss_pred             ccCCcceeecchHhhhcC-CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccc--hhccccccccchh
Confidence            999999999999999998 8999999999999999999999999999999999999999988765  8888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeeccCCCCCCCCccCCcCC
Q 001722          968 EEEMENLRKIQADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPKKF 1018 (1020)
Q Consensus       968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1020)
                      |++|..+.......+.+.+... .+...+..+|.+||.+++.| +++|+|+
T Consensus       994 e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~~~e~~-~k~~~r~ 1042 (1042)
T KOG0924|consen  994 EEEMFKAARDLVGRRLESKKAS-DKNYKRSTKINEPGEKKEEP-PKKPRRI 1042 (1042)
T ss_pred             hhhHHHHHHHHHHhhccchhcc-ccchhhhhhhcCccccccCC-CCCCCCC
Confidence            9999887754444332332222 22355678999999999874 4556663

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PHA00149 DNA encapsidation protein Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters Back     alignment and domain information
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>PHA03311 helicase-primase subunit BBLF4; Provisional Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family Back     alignment and domain information
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
3kx2_B767 Crystal Structure Of Prp43p In Complex With Adp Len 1e-153
2xau_A773 Crystal Structure Of The Prp43p Deah-Box Rna Helica 1e-153
3i4u_A270 Crystal Structure Analysis Of A Helicase Associated 4e-61
3llm_A235 Crystal Structure Analysis Of A Rna Helicase Length 7e-27
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 Back     alignment and structure 
Iteration: 1

 Score =  539 bits (1388), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 21/646 (3%)
Query: 319 RQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPR 376
           R+ LP+ + RDE L++ + NQ     GETGSGKTTQ+ Q++L D   +  N  V CTQPR
Sbjct: 90  RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 377 RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKY 436
           RVAAMSVA+RV+EEMD +LG++VGY+IRFE+ T   T++KYMTDG+LLRE ++D DL +Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 437 RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 496
             I++DEAHER+L+TD+L G+LK+VV RR D K+I+ SATL+A+KF  +F   P+  +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 497 RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 556
           RT+PV   Y+     DY+++A++  + IH T   GDIL+F+TG+DEIE A   +    +Q
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 557 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDG 611
           L+         L + P+Y  LP   Q +IFE A E       RK +++TNIAETSLT+DG
Sbjct: 330 LVREEG--CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387
Query: 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLN 671
           I YV+D G+ K KVYNP++ +++L V P+S                  C+RLYTE A+  
Sbjct: 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQK 447
Query: 672 EMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNV 731
           E++    PEI R+NL + V             FDFMDPP  E ++ ++ +L  L  L++ 
Sbjct: 448 ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507
Query: 732 GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 791
           G LT LG    +FPLDP LA ML+   +  C  E+LTIV+MLSVP+VF RP    + +D 
Sbjct: 508 GNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567
Query: 792 AREKFFVQESDHLTLLYVYQQWKE---HQYR-GDWCEEHYLHVKSLRKAREVRSQLLDIL 847
           A+  F   + DH+TLL VY  +K    ++Y    WC +HYL+ +SL  A  +RSQL  ++
Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627
Query: 848 KTLKIPLTSSGHD----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAI 902
               + L ++ ++    FD +RKA+ S +F   A+ + G   YI  ++     +HPS+  
Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV- 686
Query: 903 YGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 948
             LG+  E+V+Y+E +LT+K Y++  T+V P+WL E+ P ++ + +
Sbjct: 687 --LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 Back     alignment and structure
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 Back     alignment and structure
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 0.0
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 1e-143
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 1e-105
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-104
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-103
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 1e-100
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 1e-91
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 8e-90
1yks_A440 Genome polyprotein [contains: flavivirin protease 1e-85
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 2e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 Back     alignment and structure
 Score = 1134 bits (2935), Expect = 0.0
 Identities = 312/795 (39%), Positives = 469/795 (58%), Gaps = 43/795 (5%)

Query: 212 KQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKT 271
           ++     P    TS     +     L ++      +        E  G Q          
Sbjct: 5   RRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGEFKGLQRH-------- 56

Query: 272 AEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDEL 331
                A+ A   E G+I+     +F+             K   + + R+ LP+ + RDE 
Sbjct: 57  --HTSAEEAQKLEDGKINPFTGREFTP------------KYVDILKIRRELPVHAQRDEF 102

Query: 332 LQVIRENQVVVVVGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPRRVAAMSVAKRVSE 389
           L++ + NQ++V VGETGSGKTTQ+ Q++L D   +  N  V CTQPRRVAAMSVA+RV+E
Sbjct: 103 LKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162

Query: 390 EMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSL 449
           EMD +LG++VGY+IRFE+ T   T++KYMTDG+LLRE ++D DL +Y  I++DEAHER+L
Sbjct: 163 EMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTL 222

Query: 450 STDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP 509
           +TD+L G+LK+VV RR D K+I+ SATL+A+KF  +F   P+  +PGRT+PV   Y+   
Sbjct: 223 ATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF 282

Query: 510 CEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELL 569
             DY+++A++  + IH T   GDIL+F+TG+DEIE A   +    +QL+         L 
Sbjct: 283 QRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVRE--EGCGPLS 340

Query: 570 ILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624
           + P+Y  LP   Q +IFE A E       RK +++TNIAETSLT+DGI YV+D G+ K K
Sbjct: 341 VYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQK 400

Query: 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRT 684
           VYNP++ +++L V P+S+A+A QRAGRAGRT PG C+RLYTE A+  E++    PEI R+
Sbjct: 401 VYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRS 460

Query: 685 NLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEF 744
           NL + VL LK L ID+L+ FDFMDPP  E ++ ++ +L  L  L++ G LT LG    +F
Sbjct: 461 NLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQF 520

Query: 745 PLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHL 804
           PLDP LA ML+   +  C  E+LTIV+MLSVP+VF RP    + +D A+  F   + DH+
Sbjct: 521 PLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHI 580

Query: 805 TLLYVYQQWKEHQY----RGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHD 860
           TLL VY  +K  +        WC +HYL+ +SL  A  +RSQL  ++    + L ++ ++
Sbjct: 581 TLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYE 640

Query: 861 ----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYH 915
               FD +RKA+ S +F   A+ + G   YI  ++     +HPS+    LG+  E+V+Y+
Sbjct: 641 SPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV---LGHDAEWVIYN 697

Query: 916 ELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLR 975
           E +LT+K Y++  T+V P+WL E+ P ++ + +     ++   ++ + K     E++  +
Sbjct: 698 EFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNELKQGK 757

Query: 976 KIQADEERENKAKER 990
             +  +  +      
Sbjct: 758 NKKKSKHSKKHHHHH 772
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1020
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 1e-55
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-52
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 3e-27
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 1e-15
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 8e-05
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 8e-05
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 0.002
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 0.003
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 0.004
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 0.004
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 0.004
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  193 bits (491), Expect = 1e-55
 Identities = 43/348 (12%), Positives = 88/348 (25%), Gaps = 60/348 (17%)

Query: 494 IPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKER 553
            P     +  + +  P E +            I +       F+           +L++ 
Sbjct: 6   FPHSNGEIEDVQTDIPSEPWNTGHDW------ILADKRPTAWFLPSIRAANVMAASLRKA 59

Query: 554 MEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIF 613
                           ++ +  +       + +   K+     I+AT+IAE    +  + 
Sbjct: 60  -------------GKSVVVLNRKTFE----REYPTIKQKKPDFILATDIAEMGANLC-VE 101

Query: 614 YVIDTGY-GKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNE 672
            V+D     K  + +    +       +S ++A QR GR GR  P      Y    Y   
Sbjct: 102 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY---YSEP 157

Query: 673 MLPSPVPEIQRTN----LGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGAL 728
              +    +        L N+ +    +     ++       P E  L    +      +
Sbjct: 158 TSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELV 217

Query: 729 NNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKD-RAE 787
            N      L W++ +  L     K                          F  P++    
Sbjct: 218 RNCDLPVWLSWQVAKAGLKTNDRKWC------------------------FEGPEEHEIL 253

Query: 788 ESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRK 835
                  K          L   +    E           ++     R+
Sbjct: 254 NDSGETVKCRAPGGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGRR 299
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1020
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 100.0
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.86
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.85
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.85
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.85
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.84
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.83
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.83
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.83
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.83
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.83
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.82
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.82
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.82
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.81
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.81
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.81
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.81
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.8
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.79
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.78
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.78
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.78
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.77
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.77
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.75
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.75
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.69
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.65
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.62
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.61
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.6
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.59
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.51
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.5
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.4
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.27
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.09
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.78
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.71
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.7
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.65
d1okkd2207 GTPase domain of the signal recognition particle r 98.42
d2qy9a2211 GTPase domain of the signal recognition particle r 98.42
d1vmaa2213 GTPase domain of the signal recognition particle r 98.41
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.3
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.3
d1ls1a2207 GTPase domain of the signal sequence recognition p 98.3
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.24
d1j8yf2211 GTPase domain of the signal sequence recognition p 98.16
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.11
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.58
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 97.46
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.44
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 97.34
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 97.33
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 97.29
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 97.24
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 97.06
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 97.04
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 96.95
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 96.74
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 96.71
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 96.63
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 96.61
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 96.6
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 96.43
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 96.41
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 96.28
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 96.24
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.23
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 96.2
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 96.16
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 96.13
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 96.07
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 96.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 95.92
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 95.89
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 95.89
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 95.88
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 95.87
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 95.84
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 95.68
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 95.67
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 95.58
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 95.51
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 95.39
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 95.34
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 95.15
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.96
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 94.8
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 94.73
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 94.56
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 94.49
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 94.34
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 94.29
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 94.27
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 94.16
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 94.15
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 94.07
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 93.93
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 93.89
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 93.86
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 93.86
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 93.85
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 93.8
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 93.78
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 93.7
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 93.58
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 93.56
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 93.52
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 93.49
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 93.43
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 93.34
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 93.34
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 93.3
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 93.27
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 93.27
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 93.23
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 93.17
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 93.16
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 93.16
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 93.16
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 93.15
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 93.15
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 93.11
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 93.11
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 93.03
d2awna2232 Maltose transport protein MalK, N-terminal domain 92.79
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 92.69
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 92.68
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 92.58
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 92.56
d1g2912240 Maltose transport protein MalK, N-terminal domain 92.47
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 92.41
d2hyda1255 Putative multidrug export ATP-binding/permease pro 92.39
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 92.31
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 92.3
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 92.3
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 92.29
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 92.28
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 92.27
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 92.24
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 92.1
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 92.07
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 92.05
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 92.01
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 92.01
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 91.99
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 91.92
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 91.87
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 91.86
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 91.84
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 91.81
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 91.72
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 91.36
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 91.28
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 91.17
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 91.07
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 90.93
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 90.7
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 90.67
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 90.35
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 90.3
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 90.26
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 90.17
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 90.08
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 90.04
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 90.03
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 89.86
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 89.4
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 89.33
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 89.29
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 89.25
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 89.18
d1svma_362 Papillomavirus large T antigen helicase domain {Si 89.12
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 88.94
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 88.88
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 87.97
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 87.96
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 87.82
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 87.82
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 87.47
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 87.24
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 86.81
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 86.35
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 86.34
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 86.19
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 86.15
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 85.24
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 85.2
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 84.69
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 84.62
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 84.53
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 84.49
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 84.32
d1p6xa_333 Thymidine kinase {Equine herpesvirus type 4 [TaxId 84.11
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 83.44
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 82.76
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 82.64
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 82.1
d2fh5b1207 Signal recognition particle receptor beta-subunit 82.05
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 82.03
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 80.45
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 80.32
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=2.4e-42  Score=276.09  Aligned_cols=295  Identities=16%  Similarity=0.165  Sum_probs=216.3

Q ss_pred             HHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC
Q ss_conf             99909929999028996478999999971225998999983518999999999999840202897778983210379981
Q 001722          334 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST  413 (1020)
Q Consensus       334 ~i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~e~~~~lG~~VGy~ir~e~~~s~~t  413 (1020)
                      .+++++++||.||||||||+++...+++.....+.++++++|+|++|.|+++++.....   + ..+  ...+...+..+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~---~-~~~--~~~~~~~~~~~   78 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPI---R-YQT--PAIRAEHTGRE   78 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCC---B-CCC----------CCC
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC---C-EEE--EEEEECCCCCC
T ss_conf             86469949999799997879999999999872699899982389999999999854875---2-111--37850125765


Q ss_pred             CEEEECHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEE
Q ss_conf             09997228889988029999983179981888678780089999999996149944999813579787997738989585
Q 001722          414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFH  493 (1020)
Q Consensus       414 ~I~~~T~g~LLr~l~~d~~L~~~s~IIIDEaHERs~~tD~Ll~lLk~il~~r~~lkiIlmSATld~~~f~~~f~~~pii~  493 (1020)
                      .+.++|++.|...+..+..+.++++||+||+|........+.++++.... +++.+++++|||++...........|+..
T Consensus        79 ~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~  157 (305)
T d2bmfa2          79 IVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVE-MGEAAGIFMTATPPGSRDPFPQSNAPIMD  157 (305)
T ss_dssp             SEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCSSCCCSSCEEE
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCEEEECCCCCCCEE
T ss_conf             30137748999998458531540089853011125205788899998416-65313899415787643340234786127


Q ss_pred             ECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             26852330155447990469999999999985129999889990898899999999999999852024689998189984
Q 001722          494 IPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPI  573 (1020)
Q Consensus       494 i~gr~~pV~i~y~~~~~~dyl~~ai~~vl~i~~~~~~G~ILVFl~g~~eie~~~~~L~~~l~~l~~~~~~~~~~l~Il~l  573 (1020)
                      .... .+.  .......             .......+++||||+++++++.++..|.+.             +..+.++
T Consensus       158 ~~~~-~~~--~~~~~~~-------------~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------------~~~~~~l  208 (305)
T d2bmfa2         158 EERE-IPE--RSWNSGH-------------EWVTDFKGKTVWFVPSIKAGNDIAACLRKN-------------GKKVIQL  208 (305)
T ss_dssp             EECC-CCC--SCCSSCC-------------HHHHSSCSCEEEECSCHHHHHHHHHHHHHH-------------TCCCEEC
T ss_pred             EEEE-CCH--HHHHHHH-------------HHHHHHCCCEEEEECCHHHHHHHHHHHHHC-------------CCCEEEE
T ss_conf             9986-158--8899999-------------999960799899963099999999999867-------------9989995


Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCEEEEEECCCCCCE--ECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             499999999999988318990799954300004788986599975986520--016878964332011599879998320
Q 001722          574 YSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK--VYNPKMGMDALQVFPVSRAAADQRAGR  651 (1020)
Q Consensus       574 hs~L~~~~q~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~k~~--~yd~~~g~~~L~~~piS~asa~QRaGR  651 (1020)
                      |++++..    ....+.+|.++++|||+++++|+|+ ++.+|||+|.....  .||+..++..+...|+|.++|.||+||
T Consensus       209 ~~~~~~~----~~~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR  283 (305)
T d2bmfa2         209 SRKTFDS----EYIKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGR  283 (305)
T ss_dssp             CTTCHHH----HGGGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred             CCCCHHH----HHHHHHCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCC
T ss_conf             7838477----7754310001135556788725788-8408997587414657338987638804456998898324118


Q ss_pred             CCCCCCCEEE-ECCCHHHH
Q ss_conf             3999997899-90394667
Q 001722          652 AGRTGPGTCY-RLYTESAY  669 (1020)
Q Consensus       652 AGR~g~G~cy-rLyt~~~~  669 (1020)
                      |||.+.|..+ .+|..+..
T Consensus       284 ~GR~~~~~~~~~~~~~~~~  302 (305)
T d2bmfa2         284 VGRNPKNENDQYIYMGEPL  302 (305)
T ss_dssp             SSCSSSCCCEEEEECSCCC
T ss_pred             CCCCCCCCEEEEEECCCCC
T ss_conf             6828999269999899888
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure