Citrus Sinensis ID: 001828

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101

MGQVGLPCGFQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHccccHHHHHHHHHHEEccccccccccccccccccccccccccccccEEEEEHHHccccccccccccccccccHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccc

cccccccccHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEcccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHcHHccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHEEEEEEHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccEEEEEEcccccccEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccc

mgqvglpcgfQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQrerdpsegpvpridsslcmvLSVTTLTVADIIEEEEselideteqspsnlpkdkqapgrrrKDLVTSLQLLgdfedmltpppfvRSIANQAAAKAIMFISGltvgngyyesvsmnglatsclGNMRHLIVEACIARNLldtsaylwpgyvnasdsnqvpcsiatqmsgwsslmkgspltpsltnalvvtpasslAEIEKVYEIAvngsddekICAATVLCGASlvrgwsvqeNTILFIIKllsppvpadysgseshLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICevfgssipnaswtlssgeefscyavFSNAFTILVRLWrfhkppleqltvdmplvasqlspeYLLLVRNSklasfgtspkdqmkskrfsknikfstdpifmdsfpklKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKinrsgtpltsatsgstnssgsgledvsiklkvpawdileatPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVtrglwkpafmngtdwpspatnlSSIEQQIKKILAatgvdvptvavggnspatlplPLAALVSLTITFKLDKASDRFLALVGLGLsslasscpwpcmpivASLWAQKVKRWNDFlvfsasgtvfhynTDAVVQLLKSCFtstlgltsshnysnggvgallghgfgshfsggispvgpgiLYLRVHRSVRDVMFMKEEILSILMHCVRDiascglpreKLEKLKktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVqeggesgcmvGMLGGYALAYFAVFCATFawgvdsesraskkrptvlgTHLEFLASALDRKisvgcdcatwRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

MGQVGLPCGFQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQRERDPsegpvpridsslcmVLSVTTLTVADIIEEEESelideteqspsnlpkdkqapgrrrKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLasfgtspkdqmkskrfsknikfstdpifmdsFPKLKRWYRQNEECIASTltglvhgtSVHLIVDALLTKMFRKINRsgtpltsatsgstnssgsglEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEklkktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSesraskkrptvLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

MGQVGLPCGFQLICFWKMlwmelkllqlvllkfslalQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADiieeeeselideteQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLtsatsgstnssgsgLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNspatlplplaalvsltITFKLDKASDRFlalvglglsslassCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNggvgallghgfgshfsggISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSlaaamtraklaaslGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEElaltllgvggvgamgaaaqlIVESKI

***VGLPCGFQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQ************IDSSLCMVLSVTTLTVADII********************************VTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLM****LTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSK********************IKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKI************************VSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD*********PTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIV****

*******CGFQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQRE*DP*EGPVPRIDSSLCMVLSVTTLTVADIIEEEE**************************DLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTV***************SCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASD***************SSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASW**SSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRN*****************************IFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMF********************************KVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVA**GNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIAS***************************AMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWF*******************LGGYALAYFAVFCATFAWGV*************LGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESK*

MGQVGLPCGFQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE*************************KDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASF***********RFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSG******************EDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD********RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

***VGLPCGFQLICFWKMLWMELKLLQLVLLKFSLALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEES*******************PGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLAS******************KFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINR***********************SIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLK*TKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHG******ESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1008	2.2.26 [Sep-21-2011]
F4IN69		1275	Mediator of RNA polymeras	yes	no	0.936	0.740	0.632	0.0
Q9LUG9		1309	Mediator of RNA polymeras	no	no	0.941	0.724	0.604	0.0

>sp\|F4IN69\|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1	Back alignment and function desciption

 Score = 1208 bits (3125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/994 (63%), Positives = 754/994 (75%), Gaps = 50/994 (5%)

Query: 36   ALQVVNGTTWHDTFLG-------------------LWIAALRLLQRERDPSEGPVPRIDS 76
            ALQ  N T+WHD FL                     ++  L +L  ERDP EGPVPR D+
Sbjct: 305  ALQAANSTSWHDAFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDT 364

Query: 77   SLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFE 136
             LC++LSVT L VA+IIEEEES+ ID+T  SPSN  K+K+  G+ R+ L+ SLQ LGD+E
Sbjct: 365  FLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYE 422

Query: 137  DMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIA 196
             +LTPP  V+S+ANQAAAKAIMFISG+T  NG YE+ SM+  A+ C           C  
Sbjct: 423  SLLTPPRSVQSVANQAAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKV 471

Query: 197  R-NLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSL 255
            R +L     ++  G         + C+I    S WS +MKGSPLTPSLTN+L+ TPASSL
Sbjct: 472  RFSLFTLKMFVVMGVY-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSL 520

Query: 256  AEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSE 315
            AEIEK+YE+A  GS+DEKI  A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS 
Sbjct: 521  AEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSY 580

Query: 316  SHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSG 375
            SHLI  A  LN LLVGIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +G
Sbjct: 581  SHLINSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTG 640

Query: 376  EEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTS 435
            E  S +AVFS AFT+L+RLWRF  PPL+ +  D+P V  Q SPEYLLLVRN +L  FG S
Sbjct: 641  ELISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKS 700

Query: 436  PKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDAL 495
            PKD+M  +RFSK I  S DPIFMDSFP+LK+WYRQ++EC+AS L+ L  G+ VH IVD+L
Sbjct: 701  PKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSL 760

Query: 496  LTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACA 555
            L+ MF+K N+ G+   + +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACA
Sbjct: 761  LSMMFKKANKGGSQSLTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACA 820

Query: 556  HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSI 615
            HG LSPRELATGLK L+D LPATL T+VSYFS+EVTRGLWKP  MNGTDWPSPA NL+S+
Sbjct: 821  HGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASV 880

Query: 616  EQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLS 675
            EQQI+KILAATGVDVP +   G S ATLPLPLAALVSLTIT+KLDKA++RFL LVG  L 
Sbjct: 881  EQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALD 940

Query: 676  SLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT 735
            SLA++CPWPCMPIV SLW QKVKRW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT
Sbjct: 941  SLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLT 1000

Query: 736  -SSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHC 794
             +S   S GGVGALLGHGFGS +SGGIS   PGILY++VHRS+RDVMF+ EEILS+LM  
Sbjct: 1001 PTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFS 1060

Query: 795  VRDIASCGLPREKLEKLKKTKHGMRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLV 852
            V+ IA+  LP  + EKLKKTK G RY  GQVSL+ AM R KLAASLGASLVWISGG +LV
Sbjct: 1061 VKSIATRELPAGQAEKLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLV 1120

Query: 853  HSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKK 912
             +L+ ETLPSWFISVHG   E  E G MV ML GYALAYFA+  + FAWGVDS   ASK+
Sbjct: 1121 QALIKETLPSWFISVHG---EEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKR 1177

Query: 913  RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLS 972
            RP VL  HLEF+ SAL+ KIS+GCD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLS
Sbjct: 1178 RPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLS 1237

Query: 973  KGLRQWDEEELALTLLGVGGVGAMGAAAQLIVES 1006
            K LRQW+E++LAL LL  GG+G MGAA +LIVE+
Sbjct: 1238 KSLRQWNEQDLALALLCAGGLGTMGAATELIVET 1271

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LUG9\|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1008
296086711		1388	unnamed protein product [Vitis vinifera]	0.961	0.698	0.731	0.0
224068803		1295	predicted protein [Populus trichocarpa]	0.958	0.745	0.746	0.0
359479864		1321	PREDICTED: uncharacterized protein LOC10	0.945	0.721	0.720	0.0
224128668		1315	predicted protein [Populus trichocarpa]	0.959	0.735	0.728	0.0
225432512		1305	PREDICTED: uncharacterized protein LOC10	0.943	0.728	0.690	0.0
255551487		1325	conserved hypothetical protein [Ricinus	0.961	0.731	0.677	0.0
356513981		1303	PREDICTED: uncharacterized protein LOC10	0.961	0.743	0.685	0.0
449444909		1335	PREDICTED: mediator of RNA polymerase II	0.959	0.724	0.719	0.0
224100311		1304	predicted protein [Populus trichocarpa]	0.939	0.726	0.663	0.0
356557874		1310	PREDICTED: uncharacterized protein LOC10	0.959	0.738	0.659	0.0

>gi\|296086711\|emb\|CBI32346.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1442 bits (3733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/971 (73%), Positives = 821/971 (84%), Gaps = 2/971 (0%)

Query: 36   ALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEE 95
            ALQ VNGT+WH+TFLG+WIAALRL+QRERDPSEGPVPR+D+ LCM+LS+T L + +IIEE
Sbjct: 417  ALQAVNGTSWHNTFLGVWIAALRLVQRERDPSEGPVPRLDTCLCMLLSITPLAIVNIIEE 476

Query: 96   EESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAK 155
            EES LIDE  +SP+NL K+KQ   + RKDL++SLQLLGD+E +LT P  +  +ANQA AK
Sbjct: 477  EESTLIDEAGRSPTNLRKEKQISVKHRKDLISSLQLLGDYEGLLTVPQSLSLVANQAVAK 536

Query: 156  AIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASD 215
            A+MF+SG+T G+GY + +SMN L  +C GNMRHLIVEACIARNLLDTSAYLWPGYVN   
Sbjct: 537  AMMFVSGVTSGSGYLDCMSMNDLPMNCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGR- 595

Query: 216  SNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKIC 275
            SNQ+P S+   M GWSSLMKGSPLTP + N LV TPASSLAEIEK+YEIAVNGSDDEKI 
Sbjct: 596  SNQLPRSVPGPMPGWSSLMKGSPLTPPMINVLVSTPASSLAEIEKIYEIAVNGSDDEKIS 655

Query: 276  AATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSV 335
            AA +LCGASLVRGW++QE+T+ FI KLLSPPVPADYSG++SHLIGYA  LN LLVGISSV
Sbjct: 656  AAAILCGASLVRGWNIQEHTVFFITKLLSPPVPADYSGTDSHLIGYAPFLNVLLVGISSV 715

Query: 336  DCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLW 395
            DC+QI+SLHG VP LA ALMPICEVFGS  P  S TL++GEE S + VFSNAF +L+RLW
Sbjct: 716  DCVQIYSLHGLVPQLAGALMPICEVFGSCAPKVSCTLTTGEEISSHQVFSNAFNLLLRLW 775

Query: 396  RFHKPPLEQ-LTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTD 454
            RF+ PPLE  +  D+P V SQL+PEYLLLVRNS+LA+ G + K   K +R S+    S +
Sbjct: 776  RFNHPPLEHVMGGDIPPVGSQLTPEYLLLVRNSQLANSGNTTKGPFKYRRPSRISSPSPE 835

Query: 455  PIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSAT 514
            PIFMDSFPKLK WYRQ++ CIAS L+GLVHGT VH +VDA+L  MFRK+ R G PLT   
Sbjct: 836  PIFMDSFPKLKLWYRQHQACIASALSGLVHGTPVHQVVDAVLNMMFRKMGRGGQPLTPTA 895

Query: 515  SGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDC 574
            SGS+NSSGSG ED S++LK+PAWDILEA PFVLDAAL ACAHGRLSPRELATGLK+LSD 
Sbjct: 896  SGSSNSSGSGPEDASLRLKLPAWDILEAIPFVLDAALTACAHGRLSPRELATGLKDLSDF 955

Query: 575  LPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVA 634
            LPA+LAT+ SYFSAEVTRG+WKPAFMNGTDWPSPA NLS +EQQIKK+LAATGVDVP++A
Sbjct: 956  LPASLATIASYFSAEVTRGIWKPAFMNGTDWPSPAANLSMVEQQIKKVLAATGVDVPSLA 1015

Query: 635  VGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWA 694
              G+SPATLPLPLAALVSLTIT+KLD+A++R L +VG  L+SLA+ CPWPCMPI+ASLWA
Sbjct: 1016 AVGSSPATLPLPLAALVSLTITYKLDRATERLLTVVGPALNSLAAGCPWPCMPIIASLWA 1075

Query: 695  QKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFG 754
            QKVKRW D+L+FSAS TVFH+ +DAVVQLLKSCFTSTLGL SS   SNGGVGALLGHGFG
Sbjct: 1076 QKVKRWADYLIFSASRTVFHHKSDAVVQLLKSCFTSTLGLNSSPVSSNGGVGALLGHGFG 1135

Query: 755  SHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKT 814
            SH+SGG+SPV PGILYLRVHR VRDVMFM E +LS+LM  VRDIASCGLP+E+LEKLKKT
Sbjct: 1136 SHYSGGMSPVAPGILYLRVHRDVRDVMFMTEVVLSLLMQSVRDIASCGLPKERLEKLKKT 1195

Query: 815  KHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEG 874
            K+GMRYGQVSLAAAMTR KLAASLGAS+VWISGG +LV SL+ ETLPSWFISVHG   EG
Sbjct: 1196 KYGMRYGQVSLAAAMTRVKLAASLGASIVWISGGLTLVQSLIKETLPSWFISVHGSEHEG 1255

Query: 875  GESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISV 934
             ES  M  MLGGYALAYFAV C TFAWGVD  S ASK+RP VLG HLEFLA+ALD KIS+
Sbjct: 1256 TESEEMAAMLGGYALAYFAVLCGTFAWGVDLMSPASKRRPKVLGAHLEFLANALDGKISL 1315

Query: 935  GCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVG 994
            GC   TWRAYV   VTL+VGCTP W+ E++V+ LKR+SKGLRQW+EEELA+ LLG+GG+ 
Sbjct: 1316 GCVWGTWRAYVPALVTLMVGCTPAWIPEVDVEVLKRVSKGLRQWNEEELAIALLGLGGIH 1375

Query: 995  AMGAAAQLIVE 1005
            AMGAAA++IVE
Sbjct: 1376 AMGAAAEVIVE 1386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224068803\|ref\|XP_002302829.1\| predicted protein [Populus trichocarpa] gi\|222844555\|gb\|EEE82102.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359479864\|ref\|XP_002271735.2\| PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128668\|ref\|XP_002320389.1\| predicted protein [Populus trichocarpa] gi\|222861162\|gb\|EEE98704.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225432512\|ref\|XP_002277484.1\| PREDICTED: uncharacterized protein LOC100247741 [Vitis vinifera] gi\|297736973\|emb\|CBI26174.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255551487\|ref\|XP_002516789.1\| conserved hypothetical protein [Ricinus communis] gi\|223543877\|gb\|EEF45403.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513981\|ref\|XP_003525686.1\| PREDICTED: uncharacterized protein LOC100783353 [Glycine max]	Back alignment and taxonomy information

>gi\|449444909\|ref\|XP_004140216.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224100311\|ref\|XP_002311827.1\| predicted protein [Populus trichocarpa] gi\|222851647\|gb\|EEE89194.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356557874\|ref\|XP_003547235.1\| PREDICTED: uncharacterized protein LOC100782680 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1008
TAIR\|locus:2039356		1275	REF4 "AT2G48110" [Arabidopsis	0.747	0.590	0.612	2.6e-286
TAIR\|locus:2088050		1309	RFR1 "AT3G23590" [Arabidopsis	0.850	0.654	0.560	6.2e-259

TAIR\|locus:2039356 REF4 "AT2G48110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2371 (839.7 bits), Expect = 2.6e-286, Sum P(3) = 2.6e-286
 Identities = 465/759 (61%), Positives = 552/759 (72%)

Query:   227 MSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLV 286
             +S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A  GS+DEKI  A++LCGASL 
Sbjct:   492 ISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVASILCGASLF 551

Query:   287 RGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGW 346
             RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI  A  LN LLVGIS +DC+ IFSLHG 
Sbjct:   552 RGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLVGISPIDCVHIFSLHGV 611

Query:   347 VPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLT 406
             VPLLA ALMPICE FGS +PN +WTL +GE  S +AVFS AFT+L+RLWRF  PPL+ + 
Sbjct:   612 VPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTLLLRLWRFDHPPLDYVL 671

Query:   407 VDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKR 466
              D+P V  Q SPEYLLLVRN +L  FG SPKD+M  +RFSK I  S DPIFMDSFP+LK+
Sbjct:   672 GDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFMDSFPRLKQ 731

Query:   467 WYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLXXXXXXXXXXXXXXLE 526
             WYRQ++EC+AS L+ L  G+ VH IVD+LL+ MF+K N+ G+                 +
Sbjct:   732 WYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGGD 791

Query:   527 DVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYF 586
             D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK L+D LPATL T+VSYF
Sbjct:   792 DSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYF 851

Query:   587 SAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNXXXXXXXX 646
             S+EVTRGLWKP  MNGTDWPSPA NL+S+EQQI+KILAATGVDVP +   G         
Sbjct:   852 SSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLPLP 911

Query:   647 XXXXXXXXITFKLDKASDRFXXXXXXXXXXXXXXCPWPCMPIVASLWAQKVKRWNDFLVF 706
                     IT+KLDKA++RF              CPWPCMPIV SLW QKVKRW+DFL+F
Sbjct:   912 LAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIF 971

Query:   707 SASGTVFHYNTDAVVQLLKSCFTSTLGLT-SSHNYSNXXXXXXXXXXXXXXXXXXISPVG 765
             SAS TVFH+N DAV+QLL+SCFT TLGLT +S   S                   IS   
Sbjct:   972 SASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRYSGGISTAA 1031

Query:   766 PGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYG--QV 823
             PGILY++VHRS+RDVMF+ EEILS+LM  V+ IA+  LP  + EKLKKTK G RYG  QV
Sbjct:  1032 PGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAEKLKKTKDGSRYGIGQV 1091

Query:   824 SXXXXXXXXXXXXXXGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGM 883
             S              GASLVWISGG +LV +L+ ETLPSWFISVHG   E  E G MV M
Sbjct:  1092 SLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHG---EEDELGGMVPM 1148

Query:   884 LGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRA 943
             L GYALAYFA+  + FAWGVDS   ASK+RP VL  HLEF+ SAL+ KIS+GCD ATW+A
Sbjct:  1149 LRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQA 1208

Query:   944 YVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEE 982
             YV+GFV+L+V CTP W+LE++V+ +KRLSK LRQW+E++
Sbjct:  1209 YVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQD 1247

GO:0009698 "phenylpropanoid metabolic process" evidence=IMP

GO:0016020 "membrane" evidence=TAS

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IGI

TAIR\|locus:2088050 RFR1 "AT3G23590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IN69	MD33B_ARATH	No assigned EC number	0.6327	0.9365	0.7403	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023679001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (1323 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1008
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 61/403 (15%), Positives = 116/403 (28%), Gaps = 112/403 (27%)

Query: 365 IPNASWTLSSGEEFSCYAVFSNAFTILVRL-WRFHKPPLEQLTVDMPLVASQLSPEYLLL 423
           + +   ++ S EE     +  +A +  +RL W       E   V    V   L   Y  L
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQK-FVEEVLRINYKFL 94

Query: 424 VRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGL- 482
           +  S + +    P    +     ++  ++ + +F     K      Q    +   L  L 
Sbjct: 95  M--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQALLELR 148

Query: 483 ------VHGT-----SVHLIVDAL-----LTKMFRKINRSGTPLTSATSGSTNSSGSGLE 526
                 + G      +  + +D         KM  KI             + NS  + LE
Sbjct: 149 PAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKI-------FWLNLKNCNSPETVLE 200

Query: 527 DVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPR----ELATGLKEL------SDCLP 576
                       +L+   + +D    + +    + +     +   L+ L       +CL 
Sbjct: 201 ------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL- 247

Query: 577 ATLATVVSYFSAEVTRGLWKP----AFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPT 632
             L          V   +       AF           NLS       KIL  T     T
Sbjct: 248 --L----------VLLNVQNAKAWNAF-----------NLSC------KILLTTRFKQVT 278

Query: 633 VAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASS-CPWPCMPIVAS 691
             +   +   + L        ++T   D+     L  +      L          P   S
Sbjct: 279 DFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLS 331

Query: 692 LWAQKVK----RWNDFLVFSASGTVFHYNTDAVVQLLKSCFTS 730
           + A+ ++     W+++          H N D +  +++S    
Sbjct: 332 IIAESIRDGLATWDNWK---------HVNCDKLTTIIESSLNV 365

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00