Citrus Sinensis ID: 001846
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5U0 | 1080 | Histidine kinase 4 OS=Ara | yes | no | 0.961 | 0.895 | 0.699 | 0.0 | |
| Q9C5U2 | 1176 | Histidine kinase 2 OS=Ara | no | no | 0.922 | 0.789 | 0.541 | 0.0 | |
| Q9C5U1 | 1036 | Histidine kinase 3 OS=Ara | no | no | 0.940 | 0.913 | 0.524 | 0.0 | |
| Q9SXL4 | 1207 | Histidine kinase 1 OS=Ara | no | no | 0.327 | 0.272 | 0.311 | 1e-40 | |
| Q3S4A7 | 922 | Histidine kinase 5 OS=Ara | no | no | 0.270 | 0.295 | 0.337 | 5e-39 | |
| P0AEC5 | 918 | Signal transduction histi | N/A | no | 0.230 | 0.252 | 0.357 | 7e-37 | |
| P0AEC6 | 918 | Signal transduction histi | yes | no | 0.230 | 0.252 | 0.357 | 7e-37 | |
| P0AEC7 | 918 | Signal transduction histi | N/A | no | 0.230 | 0.252 | 0.357 | 7e-37 | |
| P59342 | 918 | Signal transduction histi | yes | no | 0.230 | 0.252 | 0.357 | 8e-37 | |
| Q54YZ9 | 2062 | Hybrid signal transductio | yes | no | 0.158 | 0.077 | 0.470 | 3e-36 |
| >sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1379 bits (3569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/1009 (69%), Positives = 800/1009 (79%), Gaps = 42/1009 (4%)
Query: 11 HSVALKVN-----EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N + MG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NKI
Sbjct: 96 HSVAVKMNNNNNNDLMGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKI 155
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTA
Sbjct: 156 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 215
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 216 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLE 275
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TVEERI
Sbjct: 276 SLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERI 335
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++ D SL H
Sbjct: 336 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSH 395
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 396 ESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDD 455
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ
Sbjct: 456 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 515
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNK IELAVFVS
Sbjct: 516 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVS 575
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K +++ + LNGG
Sbjct: 576 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDESEPKNALNGGV 633
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+EE + S +NTLSG EAADGRNSWD FKHL+ E S I S +V
Sbjct: 634 SEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVR 684
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
LMV +EDTGIGIPL AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI+F+S
Sbjct: 685 LMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFIS 744
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
RP +GSTF FTAV KC K +K+ E LP FKG+KA+VVD KPVRAAVT+YH+
Sbjct: 745 RPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHM 804
Query: 723 NRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
RLGI V + +S+K A A +NG + K Q D+ILVEKD WIS ED+ +LL
Sbjct: 805 KRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQLDMILVEKDSWISTEDNDSEIRLL 863
Query: 779 DWKPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 864 NSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELR 923
Query: 838 NKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
RQ P GSS + LL GKKILVVDDN VNR VAAGALKKFGA V CA S + A
Sbjct: 924 KTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVA 980
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L LQ PH FDACFMDIQMP+MDGFEATR+IR ME + E+ E HL
Sbjct: 981 LGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEK------------TNLEWHL 1028
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
PILAMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK P+S
Sbjct: 1029 PILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPIS 1077
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Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. In the absence of cytokinin, removes phosphate from HPt proteins, decreasing the system phosphoload. Involved in meristems establishment in seedlings. Acts as a redundant negative regulator of drought and salt stress responses, and abscisic acid (ABA) signaling in a cytokinin-dependent manner. Required to set vascular asymmetric cell divisions that establish phloem and procambium cell lines. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), isopentenyladenine (iP), and isopentenyladenosine (iPR), the meta hydroxylated derivative of benzyladenine m-topolin, buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-butynyladenine (RM6), and to a lower extent, with cis-zeatin (cZ), zeatin riboside and dihydrozeatin (DZ). Together with AHK3, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Required for the formation of auxin-transporting vascular tissues in the hypocotyl, and primary and lateral roots, but not in adventitious roots, thus leading to auxin basipetal transport that regulates root development and branching. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Prevents the uptake of sulfate by mediating cytokinin-dependent down-regulation of high-affinity sulfate transporters (e.g. SULTR1;1 and SULTR1;2) expression in roots. Together with AHK2, required for growth and reproduction promotion stimulated by the endophytic fungus Piriformospora indica in a trans-zeatin-dependent manner. Required to trigger the phytotoxic effect of the snapdragon (Antirrhinum majus) flowers volatile organic compound (VOC) methyl benzoate (MB). Plays a role in the cytokinin-mediated repression of the iron uptake pathway. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6 |
| >sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1 | Back alignment and function description |
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Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/981 (54%), Positives = 670/981 (68%), Gaps = 53/981 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L+L I+G S+ + +EE ++R+E L +MCD+RAR+LQDQFNV++NHVHA
Sbjct: 230 WRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHA 289
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L+ILVSTFH+ K PSA+DQ TF EYT RT FERPL SGVAYA +V ++RE+FE++HG
Sbjct: 290 LSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWA 349
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSGEEDRENILRA
Sbjct: 350 IKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRA 409
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+R++AT GY+G +D+ SLV
Sbjct: 410 RASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLV 469
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I V+VYD TN S + MYG ++ GD+S H S LDFGD R H+M C
Sbjct: 470 EKLLHQLASKQTIAVDVYDTTNTSGLIKMYG--SEIGDISEQHISSLDFGDPSRNHEMHC 527
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+T + + VI LVGYILY A I VE+D KM+ELK RAEAAD+A
Sbjct: 528 RFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIA 587
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q DYAQTA GK L +LINEVLD+A
Sbjct: 588 KSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQA 647
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELE V F++R ILD+V SL S K+ KGIELAV+VS +VP+ V+GDP RFRQI
Sbjct: 648 KIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQI 707
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ERGHIF+ VHLA+ +D +L G SG T+S
Sbjct: 708 ITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIED-AVLKQRLALGCSESG----ETVS 762
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G A + SW FK E + S+ + L+V VEDTG+GIP+ AQ
Sbjct: 763 GFPAVNAWGSWKNFKTCYSTE--------------SQNSDQIKLLVTVEDTGVGIPVDAQ 808
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSISK LVELM+G++ FVS P +GSTFSFT VFGK
Sbjct: 809 GRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKA 868
Query: 681 KEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ I + + DL F GL+A+V+D + +RA VT+Y L RLGI + SS++ A
Sbjct: 869 ETNT--SITKLERFDLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMAC 926
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
+ + L + +IL++KD W E S + K ++PK+ LLAT+
Sbjct: 927 TCCISKLENLA------MILIDKDAWNKEEFSVLDELFTRSKVT--FTRVPKIFLLATSA 978
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG-LLR 858
+ E + K+ G D V++KPLR S++ CLQ+ L KRQ PN + G LLR
Sbjct: 979 TLTERSEMKSTGLIDEVVIKPLRMSVLICCLQETLVNGKKRQ-----PNRQRRNLGHLLR 1033
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+ILVVDDN VNR VA GALKK+GA V C S KAAL L+ PH FDACFMD+QMPEMD
Sbjct: 1034 EKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMD 1093
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
GFEATRR+R++E + N+++ +G S + K H+PILAMTADVI AT +EC+KCGMD
Sbjct: 1094 GFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMD 1153
Query: 979 GYVSKPFEEENLYRELAKFFK 999
GYVSKPFEEE LY +A+FF+
Sbjct: 1154 GYVSKPFEEEVLYTAVARFFE 1174
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Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK3, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Together with AHK4, required for growth and reproduction promotion stimulated by the endophytic fungus Piriformospora indica in a trans-zeatin-dependent manner. Required by the cytokinin-dependent flower development regulation pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1013 (52%), Positives = 682/1013 (67%), Gaps = 67/1013 (6%)
Query: 8 NHCHSVALKVNEQMGTKIGYTFIQS---NRAWLPKALVLWIMGMAFISMSIYRGMDEENK 64
N S LK+ Y F+ S N+AW K +V+W++ +S+ + +
Sbjct: 65 NKISSSGLKI-----PSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQAM 119
Query: 65 IRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRT 124
+RKE L SMCD+RARMLQDQFNV++NHV A++IL+STFH+ K PSA+DQ TF+EYT RT
Sbjct: 120 EKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRT 179
Query: 125 AFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRD 168
+FERPL SGVAYA RV+ ++RE+FERQ G TI M S EPSP+++
Sbjct: 180 SFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQE 239
Query: 169 EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFP 228
EYAPV+F Q+ +SHV SLDM+SG+EDREN+LRAR++GK VLT PF L+ ++ LGV+LTF
Sbjct: 240 EYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFA 299
Query: 229 VYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPL 288
VYK LP +T +ERI+AT GY+GG FD+ESLVENLL QLA Q ILVNVYD+TN S P+
Sbjct: 300 VYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQPI 359
Query: 289 IMYG-DQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLV 347
MYG + + DG L S L FGD RKH+M CR+ QK P ++ T+F + VI LLV
Sbjct: 360 SMYGTNVSADG---LERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLV 416
Query: 348 GYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
+I++ I KVE+D KM++LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L
Sbjct: 417 AHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHML 476
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
+DT+L TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE V F+LR ILDDVLSL
Sbjct: 477 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSL 536
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
FS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV VHL +
Sbjct: 537 FSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDE 596
Query: 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNA 587
D + + + +TLSGL AD + SW+ FK F SN
Sbjct: 597 LFESIDGE---------------TASSPESTLSGLPVADRQRSWENFK------AFSSNG 635
Query: 588 SIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
+ D+ L+V VEDTG+GIP+ AQ R+F PFMQ S SR +GGTGIGLSI
Sbjct: 636 H----RSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSI 691
Query: 648 SKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
SKCLV LM+G+I F S P+VGSTF+FTAVF + + K ++ + F+G+KAVV
Sbjct: 692 SKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPA--ERKNDNNQPIFSEFRGMKAVV 749
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD +P RA V+ YH RLGI V++ ++ A K G T+ ++IL+E++ W +
Sbjct: 750 VDHRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTTV------NMILIEQEIW-N 802
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
E F +L +F PKLILLA ++ + G VI+KPLRASM+A
Sbjct: 803 READDFIKKL----QKDPLFLSPKLILLANSVESSISEALCTGIDPPIVIVKPLRASMLA 858
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
A LQ+ L + P + LL G+KIL+VDDN VN VAAGALKK+GA V
Sbjct: 859 ATLQRGLGIGIREPPQHKGPPALIL-RNLLLGRKILIVDDNNVNLRVAAGALKKYGADVV 917
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
CA S A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME + N+++ NG + +
Sbjct: 918 CAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVEN 977
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ HLP+LAMTADVI AT +ECLKCGMDGYVSKPFE E LYRE+++FF S
Sbjct: 978 GNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNS 1030
|
Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK2, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), cis-zeatin (cZ), dihydrozeatin (DZ), buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-propynyladenine (RM3), 2-butynyladenine (RM6), and cytokinin ribosides and ribotides. Together with AHK4, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Promotes cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator ARR2. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Plays a role in the cytokinin-mediated repression of the iron uptake pathway. Required by the cytokinin-dependent flower development regulation pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|Q9SXL4|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 181/379 (47%), Gaps = 50/379 (13%)
Query: 334 LTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEI 393
++ + +F IG + IL +K+ + + + + RAEA+ KSQFLA +SHE+
Sbjct: 451 ISASVCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASSNYKSQFLANMSHEL 510
Query: 394 RTPMNGILGMLALLLDTDLSSTQRDYAQTAQI--CGKALIALINEVLDRAKIEARKLELE 451
RTPM ++G+L +L+ D S ++ YA QI C AL+ L+N +LD +K+E+ KL LE
Sbjct: 511 RTPMAAVIGLLDILISDDCLSNEQ-YATVTQIRKCSTALLRLLNNILDLSKVESGKLVLE 569
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
F+L L+ ++ +FS + N +E + +SD +P V GD R QI NL+ NS+K
Sbjct: 570 EAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARLVQIFANLISNSIK 629
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571
FT GHI ++ G C + + +S + D R W
Sbjct: 630 FTTTGHIILR-------------------------GWCENINSLHDEMS--VSVDRRKPW 662
Query: 572 D--KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQ 629
K K + Q + N M L V+DTG GI S + VF F Q
Sbjct: 663 APMKTKQVQHRNHLQKSCKNANKMV---------LWFEVDDTGCGIDPSKWDSVFESFEQ 713
Query: 630 ADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689
AD ST+R +GGTG+GL I + LV M G+I V + +G+ Y+
Sbjct: 714 ADPSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQKNGLGTLMRL---------YLILSTP 764
Query: 690 QSKSEDLPPGFKGLKAVVV 708
+ +++ P F VV+
Sbjct: 765 DTVDQNIQPDFSKYGLVVM 783
|
Functions as an osmosensor histidine kinase that detects water stress and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Positive regulator of drought and salt stress responses, and abscisic acid (ABA) signaling. Confers drought tolerance, probably by regulating levels of ABA accumulation. Plays a redundant role in regulating plant growth and development. Required for the regulation of desiccation processes during seed formation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|Q3S4A7|AHK5_ARATH Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 170/335 (50%), Gaps = 63/335 (18%)
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
Q LAT+SHEIR+P++G++GM +L T L QR G ++ LIN++LD +K+
Sbjct: 369 QMLATMSHEIRSPLSGVVGMAEILSTTKLDKEQRQLLNVMISSGDLVLQLINDILDLSKV 428
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
E+ + LEA F R ++ VL + S K + L ++D VP V+GD R RQI+T
Sbjct: 429 ESGVMRLEATKFRPREVVKHVLQTAA-ASLKKSLTLEGNIADDVPIEVVGDVLRIRQILT 487
Query: 504 NLVGNSVKFTERGHIFVKVH-LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGL 562
NL+ N++KFT G++ +K+ ++E + V+ +A LN TEE
Sbjct: 488 NLISNAIKFTHEGNVGIKLQVISEPSFVRDNA-----LNADTEE---------------- 526
Query: 563 EAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC-VEDTGIGIPLSAQE 621
NG +E + C V DTGIGIP +A
Sbjct: 527 ------------------------------HEQNGLTETSVWICCDVWDTGIGIPENALP 556
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GK 679
+F +MQA + +R YGGTG+GL+I K LVELM GQ++ SR GSTF+F + G+
Sbjct: 557 CLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGSTFTFILPYKVGR 616
Query: 680 CKEYV-----FEDI--KQSKSEDLPPGFKGLKAVV 707
+Y F D+ +QS+ +D G+ K ++
Sbjct: 617 SDDYSDDQDEFSDMADQQSEPDDTAEGYFQFKPLL 651
|
Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Negative regulator of the ETR1-dependent abscisic acid (ABA) and ethylene signaling pathway that inhibits the root elongation. Promotes stomatal closure. Regulates stomatal opening by integrating multiple signals via hydrogen peroxide H(2)O(2) homeostasis in guard cells in an ABA-independent manner. May contribute to basal defense mechanisms by closing stomata in the presence of bacterial pathogens. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia coli (strain K12) GN=barA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O157:H7 GN=barA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Escherichia coli O157:H7 (taxid: 83334) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella flexneri GN=barA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Shigella flexneri (taxid: 623) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 9/168 (5%)
Query: 365 FHKMQELKVR-------AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
H ++E ++ AEAA AKS F+A +SHEIRTPMNGI+GM L LDT+L++ QR
Sbjct: 1323 IHNLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQR 1382
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
+Y Q +L+ +IN++LD +KIEA +LEL+ F+LRA L D L S ++ K I
Sbjct: 1383 EYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCI 1442
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI--FVKVH 523
EL ++ VP+ ++GDPGR RQI+ NLVGN++KFT +G + VKV
Sbjct: 1443 ELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVE 1490
|
Acts as a receptor histidine kinase for a signal transduction pathway. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | ||||||
| 190148353 | 1004 | cytokinin receptor 1 [Betula pendula] | 0.995 | 0.997 | 0.772 | 0.0 | |
| 359473065 | 1003 | PREDICTED: histidine kinase 4-like [Viti | 0.994 | 0.997 | 0.778 | 0.0 | |
| 224108221 | 1006 | histidine kinase cytokinin receptor [Pop | 0.992 | 0.992 | 0.771 | 0.0 | |
| 224101927 | 1007 | histidine kinase cytokinin receptor [Pop | 0.992 | 0.991 | 0.766 | 0.0 | |
| 190148363 | 1006 | cytokinin receptor 1A [Populus trichocar | 0.992 | 0.992 | 0.764 | 0.0 | |
| 255573224 | 1011 | histidine kinase 1, 2, 3 plant, putative | 0.983 | 0.978 | 0.770 | 0.0 | |
| 449445312 | 1004 | PREDICTED: histidine kinase 4-like [Cucu | 0.993 | 0.995 | 0.743 | 0.0 | |
| 449450139 | 985 | PREDICTED: histidine kinase 4-like [Cucu | 0.972 | 0.992 | 0.753 | 0.0 | |
| 356524638 | 1016 | PREDICTED: histidine kinase 4-like [Glyc | 0.995 | 0.985 | 0.733 | 0.0 | |
| 88319749 | 981 | putative histidine kinase [Cucurbita max | 0.968 | 0.992 | 0.743 | 0.0 |
| >gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula] | Back alignment and taxonomy information |
|---|
Score = 1597 bits (4136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1005 (77%), Positives = 870/1005 (86%), Gaps = 4/1005 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGLK +++H HSVA+++NEQMGTK G TFIQ+NR WLPK L+LWI+ MAF+S IY MD
Sbjct: 1 MGLKMQQSHHHSVAVRLNEQMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMD 60
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
++NK+RRKE+LGSMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAEY
Sbjct: 61 DDNKVRRKEILGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEY 120
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++RE FERQHG I TM+ EPSP+RD YAPV+F QE +
Sbjct: 121 TARTAFERPLLSGVAYAQRVVNSERESFERQHGWIIKTMEREPSPVRDVYAPVIFTQESV 180
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRA ATGKAVLT PFRLLGSHHLGVVLTFPVYKSKL +
Sbjct: 181 SYIESLDMMSGEEDRENILRATATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSSPAM 240
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
+E I+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SDPLIMYG Q QD D+
Sbjct: 241 QELIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLIMYGHQYQDSDL 300
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL HES+LDFGD FR+H+MICRYHQKA WTALTTAF FVIGLLVGYILYGA IHIVK
Sbjct: 301 SLFHESKLDFGDPFRRHQMICRYHQKAPMSWTALTTAFLFFVIGLLVGYILYGAGIHIVK 360
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+M+ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYA
Sbjct: 361 VEDDFHEMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYA 420
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQICGKALIALINEVLDRAKI+A KLELEAV F LR+ILDDVLSLFSEKSR+KGIELA
Sbjct: 421 QTAQICGKALIALINEVLDRAKIDAGKLELEAVPFVLRSILDDVLSLFSEKSRHKGIELA 480
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQI+TNLVGNSVKFTERGHIFVKVHLAE TM +AK ET L
Sbjct: 481 VFVSDKVPEIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEHTMAMVNAKAETCL 540
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG++ + SG +F TLSG E AD RNSWD FKHL+ E +S AS NMM +N SE
Sbjct: 541 NGGSDRSLFLSGGREFKTLSGCEVADERNSWDIFKHLVADEELRSEAS-RNMMNTNEASE 599
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMVCVEDTGIGIPL AQ+RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM GQI+
Sbjct: 600 HVTLMVCVEDTGIGIPLCAQDRVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMGGQIN 659
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQVGSTFSFTAVFG+CK+ F D+K+ SEDLP GF+GLKA+VVDEKPVRAAVT+Y
Sbjct: 660 FISRPQVGSTFSFTAVFGRCKKNAFSDVKKPISEDLPSGFRGLKALVVDEKPVRAAVTRY 719
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI+V+++SS K A + T K G + + KFQPD++LVEKD W+S E+ G N LLD
Sbjct: 720 HLKRLGILVEVASSFKIAVAMTGKKG-SLTLRKFQPDLVLVEKDSWMSAEEGGLNGWLLD 778
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK NGH+F+LPK+ILLATNI K E DKAKA GFADTVIMKPLRASM+AACLQQVL K
Sbjct: 779 WKQNGHIFQLPKMILLATNIDKAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGIGKK 838
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
RQ + + NGSSF Q LL GKKILVVDDN VNR VA GALKKFGA VECA S KAAL L
Sbjct: 839 RQQEKDMLNGSSFLQSLLCGKKILVVDDNRVNRRVAEGALKKFGADVECAESGKAALALL 898
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PH FDACFMDIQMPEMDGFEATR+IR MESK NEQ +NGG++ +G ++ E H+PILA
Sbjct: 899 QLPHNFDACFMDIQMPEMDGFEATRQIRVMESKENEQ-INGGATDEGAIRKREWHVPILA 957
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
MTADVIHAT+DECLKCGMDGYVSKPFEEENLY+ +AKFFKS P+S
Sbjct: 958 MTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSNPIS 1002
|
Source: Betula pendula Species: Betula pendula Genus: Betula Family: Betulaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1594 bits (4127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1005 (77%), Positives = 866/1005 (86%), Gaps = 5/1005 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGLK + +H SVA+++NEQMGTK GYTFIQ+NRAWLPK LV WIM MA S +Y MD
Sbjct: 1 MGLKMQSHH--SVAVRLNEQMGTKRGYTFIQANRAWLPKFLVFWIMLMAVFSNFVYNKMD 58
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
NK RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAEY
Sbjct: 59 AANKERREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEY 118
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RV ++RE+FE+QHG TI TMK E SPIRDEYAPV+F QE +
Sbjct: 119 TARTAFERPLLSGVAYAQRVAYSERERFEKQHGWTIKTMKREASPIRDEYAPVIFSQETV 178
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP TV
Sbjct: 179 SYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTV 238
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
E+RI+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SDPL+MYG Q QD DM
Sbjct: 239 EQRIEATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDM 298
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SLLHES+LDFGD FRKH+MICRYHQK T WT+LTTAF FVIGLLVGYILYGAAIHIVK
Sbjct: 299 SLLHESKLDFGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVK 358
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA
Sbjct: 359 VEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 418
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALI LINEVLDRAKIEA KLELEAV FNLR+ILDDVLSLFSEKSR+KG+ELA
Sbjct: 419 QTAQACGKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELA 478
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGHIFV+VHLAE T DAK ET L
Sbjct: 479 VFVSDKVPEMVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETCL 538
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG++EG+ +G QF TLSG EAAD +NSWD+FKHLI E +S+AS I M ++ SE
Sbjct: 539 NGGSDEGLVSNGGSQFRTLSGCEAADDQNSWDRFKHLIFDEDLRSDASNI-MTVTSEASE 597
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMV VEDTGIGIPL AQ RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQI
Sbjct: 598 KVTLMVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIK 657
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQ+GSTFSFTA FG+CK+ D+K+S S+DLP GF+GLKA+VVD +PVRA VT+Y
Sbjct: 658 FISRPQIGSTFSFTADFGRCKKNALSDLKKSNSDDLPIGFRGLKAIVVDGRPVRAIVTKY 717
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI+V++++SIK A + T KNG +S QPD+ILVEKD WIS ED+ N +LLD
Sbjct: 718 HLKRLGILVEVANSIKKAVAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLD 777
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK N H KLPK+ILLATNIS E DKAKA GFADTVIMKPLRASM+AACLQQVL K
Sbjct: 778 WKQNRHTLKLPKMILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKK 837
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
RQ G+ + NGS+F Q LL GKKILVVDDN VNR VAAGALKKFGA VECA S KAAL L
Sbjct: 838 RQQGKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLL 897
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PH FDACFMDIQMPEMDGFEATRRIR +ESKANEQ MNGG + +G A + E H+PILA
Sbjct: 898 QLPHNFDACFMDIQMPEMDGFEATRRIRLIESKANEQ-MNGGCTPEGAATKGEWHVPILA 956
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
MTADVIHAT+D+CLKCGMDGYVSKPFEEENLY+ +AKFFKSKP+S
Sbjct: 957 MTADVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKFFKSKPIS 1001
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa] gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa] gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1587 bits (4108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1004 (77%), Positives = 865/1004 (86%), Gaps = 6/1004 (0%)
Query: 1 MGLKTRKNHCHSVALKVN-EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGM 59
M L ++++ HSVA+K+N +QMGTK GYTFIQ+NR WLPK L+LW+M MA S++IY GM
Sbjct: 1 MALNIQQSYHHSVAVKMNGQQMGTKRGYTFIQANRTWLPKILLLWVMAMALFSLTIYNGM 60
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D +N++RRKEVL SMCDQRARMLQDQFNV+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAE
Sbjct: 61 DADNRVRRKEVLSSMCDQRARMLQDQFNVSVNHVHALAILVSTFHYYKNPSAIDQETFAE 120
Query: 120 YTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEP 179
YT RTAFERPLLSGVAYA RVV+++R +FERQHG TI TM+ EPSPIRDEYAPV+F QE
Sbjct: 121 YTARTAFERPLLSGVAYAQRVVNSERLEFERQHGWTIKTMEREPSPIRDEYAPVIFSQET 180
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+S+++SLDMMSGEEDRENILRARA+GKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 181 VSYIESLDMMSGEEDRENILRARASGKAVLTGPFRLLGSHHLGVVLTFPVYKSKLPPSPT 240
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
V +RI+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SD LIMYG QNQDGD
Sbjct: 241 VAQRIEATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNQDGD 300
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
MSLLHES+LDFGD FR+H M CRYH+KA T WTALTT F FVIGLLVGYILY AAIHIV
Sbjct: 301 MSLLHESKLDFGDPFRRHLMTCRYHEKAPTSWTALTTTFLFFVIGLLVGYILYEAAIHIV 360
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDDFH+MQ+LKV+AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY
Sbjct: 361 KVEDDFHEMQDLKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 420
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQTAQ+CGKALIALINEVLDRAKIEA KLELEAV F++R+I+DDVLSLFSEKSRNKGIEL
Sbjct: 421 AQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFHIRSIVDDVLSLFSEKSRNKGIEL 480
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AVFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGH FVKVHL E TD K +T
Sbjct: 481 AVFVSDKVPEIVVGDPGRFRQIITNLVGNSVKFTERGHTFVKVHLYEHAKATTDTKADTC 540
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
L GG+ E V SG+ +F TLSG EAAD +NSWD FKHL D E F+ +AS IN+M SN S
Sbjct: 541 LIGGSNESVLISGSQKFKTLSGCEAADDQNSWDVFKHLSD-EDFRFDAS-INVMTSNEAS 598
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E++TLMVCVEDTGIGIPL AQ RVFMPF+QADSSTSRHYGGTGIGLSISKCLVELM GQI
Sbjct: 599 ENITLMVCVEDTGIGIPLKAQSRVFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQI 658
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
SF+SRP+VGSTFSFTAVF CK+ F +++ +EDLP GF+GLKA+VVD KPVRAAVT+
Sbjct: 659 SFISRPEVGSTFSFTAVFSTCKKNAFTKMEKRNAEDLPSGFRGLKALVVDGKPVRAAVTR 718
Query: 720 YHLNRLGIMVKMSSSIKDAS-STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
YHL RLGI+ ++ S++K A+ S KNG +S K QPD+ILVEKD WISGED N L
Sbjct: 719 YHLKRLGILAEVVSNLKVAAGSCGKNGSLTSGSKIQPDMILVEKDTWISGEDGVSNVWKL 778
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
DWK NGH FK PK+ILLATNI+ E DKAKA GFADTVIMKPLRASM+AACL QVL
Sbjct: 779 DWKQNGHAFKFPKMILLATNITNSEFDKAKAAGFADTVIMKPLRASMVAACLLQVLGMGK 838
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
KR G+ +PNGSSF Q LL GKKILVVDDN VNR VAAGALKKFGA VECA S K AL
Sbjct: 839 KRSQGKCMPNGSSFLQSLLCGKKILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKL 898
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD-GTAKRDELHLPI 957
LQ PH FDACFMDIQMPEMDGFEATRRIRQMES+ANEQ MNG S V+ GTA++ + H+PI
Sbjct: 899 LQLPHTFDACFMDIQMPEMDGFEATRRIRQMESQANEQ-MNGESMVEGGTARKGQWHIPI 957
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LAMTADVIHAT DECLKCGMDGYVSKPFEEENLY+ +A+FF SK
Sbjct: 958 LAMTADVIHATHDECLKCGMDGYVSKPFEEENLYQAVARFFDSK 1001
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa] gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1575 bits (4079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1005 (76%), Positives = 863/1005 (85%), Gaps = 7/1005 (0%)
Query: 1 MGLKTRKNHCHSVALKVN-EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGM 59
M LK ++++ HSVA+KVN +QMGTK GYTFIQ+NR WLPK L+LW+M MA S++IY GM
Sbjct: 1 MALKMQQSYHHSVAVKVNDQQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGM 60
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D +NK+RRKEVLGSMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAE
Sbjct: 61 DADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAE 120
Query: 120 YTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEP 179
YT RTAFERPLLSGVAYA RV+D++R +FERQHG TI TM+ EPSPIRDEYAPV+F QE
Sbjct: 121 YTARTAFERPLLSGVAYARRVIDSERHEFERQHGWTIKTMEREPSPIRDEYAPVIFSQET 180
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+S+++SLDMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 181 VSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPT 240
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
V +RI+ATAGY+GG FD+ESLVENLLGQLAGNQAILVNVYD+TN+SD LIMYG QN DGD
Sbjct: 241 VAQRIEATAGYLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGD 300
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
+SLLHES+LDFGD FRKH M CRYH+KA T WTAL+TAF FVIGLLVGYILYGAAIHIV
Sbjct: 301 LSLLHESKLDFGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIV 360
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNG+LGMLALLLDTDLSSTQRDY
Sbjct: 361 KVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDY 420
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQTAQ+CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKGIEL
Sbjct: 421 AQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIEL 480
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AVFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHL E TD K +T
Sbjct: 481 AVFVSDKVPEIVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTC 540
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
LNGG+ E V SG+ +F TLSG EAAD +NSWD FKH D E F+ +AS IN+M +N S
Sbjct: 541 LNGGSNESVLTSGSQKFKTLSGCEAADDQNSWDVFKHFSD-EDFRFDAS-INVMTNNEAS 598
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
EDV LMVCVEDTGIGIPL AQ RVFMPF+QADSSTSR YGGTGIGLSISKCLVELM GQI
Sbjct: 599 EDVGLMVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQI 658
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+F+SRP+VGSTFSFTAVFG CK+ F ++++ +E+LP GF+GLKA+VVD PVRA VT+
Sbjct: 659 NFISRPEVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSGFRGLKALVVDGNPVRATVTR 718
Query: 720 YHLNRLGIMVKMSSSIKDAS-STAKNG-LTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
YHL RLGI+ ++ SS+K A+ KNG LTS K PDIILVEKD WISGED +
Sbjct: 719 YHLKRLGILAEVVSSLKLAAIGCGKNGSLTSGRGKIHPDIILVEKDSWISGEDGVSSVWQ 778
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
LD K NGH FKLPK+ILLATNI+ E D AK GFADTVI+KPLR+SM+AACL QVL
Sbjct: 779 LDSKQNGHAFKLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMG 838
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
KR G+G+PNGSSF Q LL GK+ILVVDDN VNR VAAGALKKFGA ECA S K AL
Sbjct: 839 KKRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALK 898
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV-DGTAKRDELHLP 956
LQ PH +DACFMDIQMPEMDGFEATRRIRQMES+ANEQ MNG S V +GTA++ + H+P
Sbjct: 899 LLQPPHTYDACFMDIQMPEMDGFEATRRIRQMESQANEQ-MNGESMVEEGTARKVQWHIP 957
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
ILAMTADVIHAT DECLK GMDGYVSKPFEEENLY+ +A+FF +K
Sbjct: 958 ILAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVARFFDTK 1002
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1575 bits (4078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/1004 (76%), Positives = 862/1004 (85%), Gaps = 6/1004 (0%)
Query: 1 MGLKTRKNHCHSVALKVN-EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGM 59
M LK ++++ HSVA+KVN +QMGTK GYTFIQ+NR WLPK L+LW+M MA S++IY GM
Sbjct: 1 MALKMQQSYHHSVAVKVNDQQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGM 60
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D +NK+RRKEVLGSMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAE
Sbjct: 61 DADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAE 120
Query: 120 YTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEP 179
YT RTAFERPLLSGVAYA RV+D++R +FERQHG TI TM+ EPSPIRDEYAPV+F QE
Sbjct: 121 YTARTAFERPLLSGVAYARRVIDSERHEFERQHGWTIKTMEREPSPIRDEYAPVIFSQET 180
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+S+++SLDMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 181 VSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPT 240
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
V +RI+ATAGY+GG FD+ESLVENLLGQLAGNQAILVNVYD+TN+SD LIMYG QN DGD
Sbjct: 241 VAQRIEATAGYLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGD 300
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
+SLLHES+LDFGD FRKH M CRYH+KA T WTAL+TAF FVIGLLVGYILYGAAIHIV
Sbjct: 301 LSLLHESKLDFGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIV 360
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNG+LGMLALLLDTDLSSTQRDY
Sbjct: 361 KVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDY 420
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQTAQ+CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKGIEL
Sbjct: 421 AQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIEL 480
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AVFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHL E TD K +T
Sbjct: 481 AVFVSDKVPEIVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTC 540
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
LNGG+ E V SG+ +F TLSG EAAD +NSWD FKH D E F+ +AS IN+M +N S
Sbjct: 541 LNGGSNESVLTSGSQKFKTLSGCEAADDQNSWDVFKHFSD-EDFRFDAS-INVMTNNEAS 598
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
EDV LMVCVEDTGIGIPL AQ RVFMPF+QADSSTSR YGGTGIGLSISKCLVELM GQI
Sbjct: 599 EDVGLMVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQI 658
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+F+SRP+VGSTFSFTAVFG CK+ F ++++ +E+LP GF+GLKA+VVD PVRA VT+
Sbjct: 659 NFISRPEVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSGFRGLKALVVDGNPVRATVTR 718
Query: 720 YHLNRLGIMVKMSSSIKDAS-STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
YHL RLGI+ ++ SS+K A+ KNG +S K PDIILVEKD WISGED + L
Sbjct: 719 YHLKRLGILAEVVSSLKLAAIGCGKNGSLTSGGKIHPDIILVEKDSWISGEDGVSSVWQL 778
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
D K NGH FKLPK+ILLATNI+ E D AK GFADTVI+KPLR+SM+AACL QVL
Sbjct: 779 DSKQNGHAFKLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGK 838
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
KR G+G+PNGSSF Q LL GK+ILVVDDN VNR VAAGALKKFGA ECA S K AL
Sbjct: 839 KRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKL 898
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV-DGTAKRDELHLPI 957
LQ PH +DACFMDIQMPEMDGFEATRRIRQMES+ANEQ MNG S V +GTA++ + H+PI
Sbjct: 899 LQPPHTYDACFMDIQMPEMDGFEATRRIRQMESQANEQ-MNGESMVEEGTARKVQWHIPI 957
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LAMTADVIHAT DECLK GMDGYVSKPFEEENLY+ +A+FF +K
Sbjct: 958 LAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVARFFDTK 1001
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis] gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1563 bits (4048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/995 (77%), Positives = 856/995 (86%), Gaps = 6/995 (0%)
Query: 12 SVALKVNEQ-MGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEV 70
SV++KV+EQ MGTK +TFIQ++RAWLPK L+LW+M +AF+S SI+ MD +NK+RRKE
Sbjct: 19 SVSVKVSEQQMGTKGSHTFIQAHRAWLPKLLLLWVMFVAFVSYSIFNNMDAQNKVRRKET 78
Query: 71 LGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPL 130
L SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RT+FERPL
Sbjct: 79 LSSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYNKNPSAIDQETFAEYTARTSFERPL 138
Query: 131 LSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMS 190
LSGVAYA RVV+++RE+FE QHG TI TM+ EPSP+RDEYAPV+F QE +S+++SLDMMS
Sbjct: 139 LSGVAYAQRVVNSEREEFESQHGWTIKTMEKEPSPLRDEYAPVIFSQETVSYIESLDMMS 198
Query: 191 GEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGY 250
GEEDRENIL ARATGKAVLT PFRLL SHHLGVVLTFPVYKSKLPP TV +RI+A+AGY
Sbjct: 199 GEEDRENILNARATGKAVLTSPFRLLNSHHLGVVLTFPVYKSKLPPNPTVSQRIEASAGY 258
Query: 251 IGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDF 310
+GG FDVESLVENLLGQLAGNQAILVNVYD+TNASDPLIMYG QNQDGDMSL+HES+LDF
Sbjct: 259 LGGAFDVESLVENLLGQLAGNQAILVNVYDVTNASDPLIMYGVQNQDGDMSLVHESKLDF 318
Query: 311 GDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQE 370
GD FRKH+MICRYH+KA T WTALTTAF VIGLLVGYILYGAA HIVKVEDDFH+MQE
Sbjct: 319 GDPFRKHQMICRYHEKAPTSWTALTTAFLFSVIGLLVGYILYGAANHIVKVEDDFHEMQE 378
Query: 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ CGKAL
Sbjct: 379 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKAL 438
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
IALINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR+KGIELAVFVSDKVPE
Sbjct: 439 IALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEI 498
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL E AK ++ LNGG+ + V
Sbjct: 499 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLDENAKATAFAKADSCLNGGSSD-VIV 557
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
S + QF TLSG EAAD RN W+ FKHL+ E FQSN S +N++ +N E+VTL+V VED
Sbjct: 558 SDSCQFKTLSGFEAADDRNGWEAFKHLVADEDFQSNGS-LNVLTTNDACENVTLVVSVED 616
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIPL AQ+RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELM G ISFVSRPQVGST
Sbjct: 617 TGIGIPLHAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRPQVGST 676
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
FSFTA FG+CK+ F +++ SEDLP F+GLKA+VVD KPVRAAVT YHL RLGI+ +
Sbjct: 677 FSFTAAFGRCKKNKFNKMEKRNSEDLPSSFRGLKAIVVDGKPVRAAVTTYHLKRLGILAE 736
Query: 731 MSSSIKDASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
++SS+K A+ T AKNG S + QPDIILVEKD WISGED G + LL+ K NGHVFKL
Sbjct: 737 VASSLKVAAFTCAKNG--SLKSSAQPDIILVEKDSWISGEDGGSSVWLLERKQNGHVFKL 794
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
PK+ILLATNIS DE +KAKA GFADTVIMKPLRASM+ ACLQQV+ R G+ VPNG
Sbjct: 795 PKMILLATNISSDEFNKAKAAGFADTVIMKPLRASMVGACLQQVMGMGKTRPQGKDVPNG 854
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
SSF Q LL GKKILVVDDN VNR VAAGALKKFGA VECA S KAAL LQ PH FDACF
Sbjct: 855 SSFLQSLLYGKKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQLPHSFDACF 914
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MDIQMPEMDGFEATRRIRQMES+ANEQ+ + G A++ E H+PILAMTADVIHAT+
Sbjct: 915 MDIQMPEMDGFEATRRIRQMESQANEQINGQSMAEGGAARKGEWHVPILAMTADVIHATY 974
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
DECLK GMDGYVSKPFEEENLY+ +AKFFK+KP+S
Sbjct: 975 DECLKSGMDGYVSKPFEEENLYQAVAKFFKAKPIS 1009
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1525 bits (3949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/1007 (74%), Positives = 859/1007 (85%), Gaps = 8/1007 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
M +K +++H HSVA++ NEQ+G+K G TFIQ+ R WLPK L+LW++ +AFISM IY+GMD
Sbjct: 1 MSMKMQQSH-HSVAVRFNEQIGSKKGSTFIQAKRDWLPKFLLLWVLLVAFISMLIYKGMD 59
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
+NK+RRKEVLGSMCDQRARMLQDQF+V+VNHVHAL IL+STFHY KN SA+DQ+TFAEY
Sbjct: 60 ADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEY 119
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVA+A RVV +RE+FE+QHG TI TM+ EPSPI+DEYAPV+F QE +
Sbjct: 120 TARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIKDEYAPVIFSQETV 179
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILR+R TGKAVLT PFRLLGSHHLGVVLT PVYK+KLP T+
Sbjct: 180 SYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTM 239
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
+ER +ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN SDPL+MYG Q +DGDM
Sbjct: 240 DERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDM 299
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL HES+LDFGD FRKH+MICRYHQKA T WTALTTAF FVIGLLVGYILYGAA HIVK
Sbjct: 300 SLSHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVK 359
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+MQELKVRAEAAD+AKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYA
Sbjct: 360 VEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYA 419
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALIALINEVLDRAKIEA KLELEAV F+LR ILDDVLSLFSEKSR+KG+ELA
Sbjct: 420 QTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELA 479
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQ+ITNLVGNSVKFTE GHIFVKV LAE++MV T+ K ET +
Sbjct: 480 VFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHV 539
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NG +E+G + QF TLSG EAAD +NSWD FKHL + E FQ N S N+MA+N S+
Sbjct: 540 NGNSEDGASHN-KHQFETLSGFEAADNQNSWDTFKHLANEE-FQPNGS-SNLMATNEISD 596
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VT+M+ VEDTGIGIPLSAQ RVFM FMQADSSTSR+YGGTGIGL ISKCLVELM GQI+
Sbjct: 597 IVTVMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQIN 656
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
FVS+PQVGSTFSFTAVFG+C++ +IK+S E+LP F+GLKAVVVD KPVRAAVT+Y
Sbjct: 657 FVSKPQVGSTFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKY 716
Query: 721 HLNRLGIMVKMSSSIKDASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL-- 777
HL RLGI+V+++SS+K A++ KNG S + QPD+IL+EKD +IS E+ G + L
Sbjct: 717 HLKRLGILVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQ 776
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
LDWK NGH KLPKLILLAT +S E DKAK GF+DT+IMKPLRASMI ACLQQVL +
Sbjct: 777 LDWKQNGHTLKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSG 836
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
KRQ G+ + NGS+F +GLL GKKILVVDDN VNR VAAGALKKFGA VEC S KAAL
Sbjct: 837 KKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALA 896
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
LQ PH FDACFMDIQMPEMDGFEATRRIR MESK NE ++ + + A++DE H+PI
Sbjct: 897 LLQLPHSFDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKE-NARKDEWHVPI 955
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
LAMTADVIHAT+DECLKCGMDGYVSKPFEEENLY+ +AKFF +KP++
Sbjct: 956 LAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPIT 1002
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus] gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1507 bits (3901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/994 (75%), Positives = 840/994 (84%), Gaps = 16/994 (1%)
Query: 11 HSVALKVNEQMGT-KIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKE 69
+S A+K NEQMGT K GYTF+Q+NRAWL K L+ WIMGMAFISM IY GMD +NK+RR E
Sbjct: 6 YSAAMKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNE 65
Query: 70 VLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERP 129
VLGSMC+QRARMLQDQF+V+VNHVHAL +LVSTFHYFKNPSA+DQ+TFAEYT RTAFERP
Sbjct: 66 VLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERP 125
Query: 130 LLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMM 189
LLSGVAYA RV+ ++R+ FE+QHG I TMK EPSPIRDEYAPV+F QE +S+++SLDMM
Sbjct: 126 LLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMM 185
Query: 190 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAG 249
SGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLP + T E+RI+ATAG
Sbjct: 186 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAG 245
Query: 250 YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELD 309
Y+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SDPL+MYG Q QDGD+SLLHES LD
Sbjct: 246 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLD 305
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ 369
FGD FRKH MICRY Q+A T WTALTTAF FVIGLLVGYILYGAA HI+KVEDDFH MQ
Sbjct: 306 FGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQ 365
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
LKVRAEAAD+AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ+DYAQTAQ CGKA
Sbjct: 366 ILKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKA 425
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSR KG+ELAVFVSDKVPE
Sbjct: 426 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPE 485
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE + D+K +NG ++ +
Sbjct: 486 IVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSK---YVNGISDSDLF 542
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
SG F TLSG EAAD +N WD FKH+I E FQ NA+ +M+ +N G VTLMV VE
Sbjct: 543 ISGGRDFQTLSGCEAADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVE 602
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGI L AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELM GQI+F+SRPQ+GS
Sbjct: 603 DTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGS 662
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TFSFTAVFGKCK+ D+K+ SE+LPP F+G+KA++VD K VRA+VT+YHL RLGI V
Sbjct: 663 TFSFTAVFGKCKKNSINDLKKPNSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGIKV 722
Query: 730 KMSSSIKDASSTAK-NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
+++SS+ A+S ++ NG T + PD+ILVEKD S E+ G Q L+ K NG+ FK
Sbjct: 723 EVTSSVNMAASLSRENGSTIPGNAILPDMILVEKDTLNSDEECGTIHQ-LNLKLNGNSFK 781
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
LPKLILLATNI+ E DKAKA GFADTVIMKPLRASM+AACLQQVL +N+R+ GRGVPN
Sbjct: 782 LPKLILLATNITTAELDKAKAVGFADTVIMKPLRASMVAACLQQVLGVKNQRR-GRGVPN 840
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
GS+F Q LL GK+IL+VDDN VNR VAAGALKKFGA VECA S KAAL LQ PH FDAC
Sbjct: 841 GSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDAC 900
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
FMDIQMPEMDGFEATR IR ME+K NE G S G K H+PILAMTADVIHAT
Sbjct: 901 FMDIQMPEMDGFEATRLIRMMENKENE-----GESYAGEGK---WHMPILAMTADVIHAT 952
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+DECLKCGMDGYVSKPFEEENLY+E+AKFFK KP
Sbjct: 953 YDECLKCGMDGYVSKPFEEENLYKEVAKFFK-KP 985
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524638|ref|XP_003530935.1| PREDICTED: histidine kinase 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/1006 (73%), Positives = 838/1006 (83%), Gaps = 5/1006 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
+GLK + H +ALK++EQ G+K YTFIQ++RAWLPK L+LWI+ MA I I+ MD
Sbjct: 3 LGLKMKSLRHHPMALKIHEQAGSKRKYTFIQAHRAWLPKFLMLWILLMALIGCFIFSKMD 62
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
+ K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++ PSA+DQ+TFAEY
Sbjct: 63 ADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEY 122
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++RE FE+QHG I TM+ EPS +RDEYAPV+F QE +
Sbjct: 123 TARTAFERPLLSGVAYAQRVVNSERETFEKQHGWVIKTMEREPSLVRDEYAPVIFVQETL 182
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++S+DMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP+ T+
Sbjct: 183 SYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTM 242
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERIKATAGY+GG FDVESLVENLLGQLAG+QAILVNVYD+TN++D LIMYG+QN++GDM
Sbjct: 243 EERIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDHLIMYGNQNEEGDM 302
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL+HES+LDFGDS+RKH MICRYHQKA T W ALTTAF FVI LLVGYILYGA HIVK
Sbjct: 303 SLVHESKLDFGDSYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVK 362
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+M+ELKVRAEAA VAKSQFLATVSHEIRTPMNGILGML LLL T+LSSTQRDYA
Sbjct: 363 VEDDFHQMEELKVRAEAAHVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYA 422
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKG+ELA
Sbjct: 423 QTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELA 482
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ V+GDPGRFRQI+TNLVGNSVKFTERGH+FVKVHL+E M + K E L
Sbjct: 483 VFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHVFVKVHLSENRMSTMNGKIEKFL 542
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG +E V SG TLSG EAAD RNSWD FKHLI E F +AS+ + + + E
Sbjct: 543 NGGLDEPVHMSGGYNSKTLSGYEAADERNSWDNFKHLIADEEFFYDASVKRVASES--YE 600
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMV VEDTGIGIP SAQ+R+FMPF+QADSSTSRHYGGTGIGLSISKCLVELM G+IS
Sbjct: 601 QVTLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEIS 660
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+S+PQVGSTFSFTA FG K+ D+K+ EDLP F+GLKA+VVD KPVRAAVT+Y
Sbjct: 661 FISQPQVGSTFSFTADFGTIKKNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRY 720
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI K+++S A S KNG +S FQPDII VEKD W+ ED FN LD
Sbjct: 721 HLKRLGIQAKVANSFNKAVSLCGKNGCLTS-GLFQPDIIFVEKDSWVCVEDGIFNVWQLD 779
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK N H+FK+P++ILLATNI DE DKAKA GF+DTVIMKPLRASM+AACLQQVL T K
Sbjct: 780 WKQNRHIFKIPQMILLATNIGNDEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKK 839
Query: 840 RQAGRGV-PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
RQ G+ + PNGS+F + LL GKKILVVDDN VNR VAAGALK FGA V CA S K AL+
Sbjct: 840 RQHGKDMNPNGSTFVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEM 899
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ PH FDACFMDIQMPEMDGFEATR+IR ME+KANEQ MNG K + H+PIL
Sbjct: 900 LQLPHNFDACFMDIQMPEMDGFEATRQIRMMETKANEQQMNGECGEGNGWKDKKYHIPIL 959
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
AMTADVIHAT+DEC+KCGMDGYVSKPFEEENLY+ +AKFF KP S
Sbjct: 960 AMTADVIHATYDECVKCGMDGYVSKPFEEENLYQAVAKFFNPKPTS 1005
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima] | Back alignment and taxonomy information |
|---|
Score = 1482 bits (3837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/994 (74%), Positives = 834/994 (83%), Gaps = 20/994 (2%)
Query: 11 HSVALKVNEQMGT-KIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKE 69
+SV LK NEQMGT K GYTF+Q+NRAWL K L+ WIMGMAFISM IY GMD + K+RR E
Sbjct: 6 NSVGLKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNE 65
Query: 70 VLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERP 129
VLGSMC+QRARMLQDQFNV+VNHVHAL +LVSTFHYFKNPSA+DQ+TFAEYT RTAFERP
Sbjct: 66 VLGSMCEQRARMLQDQFNVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERP 125
Query: 130 LLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMM 189
LLSGVAYA RV+ ++R+ FE+QHG I TM+ EPSP RDEYAPV+F QE +S+++SLDMM
Sbjct: 126 LLSGVAYAQRVIHSERDIFEKQHGWMIRTMEKEPSPDRDEYAPVIFSQETVSYIESLDMM 185
Query: 190 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAG 249
SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYK KLP T EERI+ATAG
Sbjct: 186 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAG 245
Query: 250 YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELD 309
Y+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SD L+MYG Q QDGD+SL HES LD
Sbjct: 246 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLD 305
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ 369
FGD FRKH MICRY Q+A T WTALTTAF FVIGLLVGYILYGAA HIVKVEDDFH+MQ
Sbjct: 306 FGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 365
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ+DYAQTAQ CGKA
Sbjct: 366 VLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKA 425
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSR KG+ELAVFVSDKVPE
Sbjct: 426 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPE 485
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE + V D++ +NG ++ G+
Sbjct: 486 IVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSE---YVNGISDSGLF 542
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
+F TLSG EAAD +NSWD FKHLI + FQSNA+ N +N G + VTLMV VE
Sbjct: 543 VLDGREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVE 602
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGI L AQ RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQI+F+SRPQ+GS
Sbjct: 603 DTGIGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGS 662
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TFSFTAVFGKCK+ D+K+ SE+LPP F+G+KA+VVD K VRA+VT+YHL RLGI+V
Sbjct: 663 TFSFTAVFGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIV 722
Query: 730 KMSSSIKDASSTAK-NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
++++SI A+S + NG T + PD+ILVEKD S E+ G L+WKPNG K
Sbjct: 723 EVTNSINMAASLFRENGSTLPRNTILPDMILVEKDILNSDEECGI-IHHLNWKPNGSSVK 781
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
PKLILLATNI+ E DKA+A GFADTVIMKPLRA+M+AACLQQVL +N+R+ PN
Sbjct: 782 FPKLILLATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGVKNQRR-----PN 836
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
GS+F Q LL GK+IL+VDDN VNR VAAGALKKFGA VECA S K+AL LQ PH FDAC
Sbjct: 837 GSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDAC 896
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
FMDIQMPEMDGFEATRRIR ME +AN+ G S+ +G KR +PILAMTADVIHAT
Sbjct: 897 FMDIQMPEMDGFEATRRIRTMEVEANK---GGLSATEG--KRP---IPILAMTADVIHAT 948
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
++ECLKCGM+GYVSKPFEEENLY+E+A+FFK KP
Sbjct: 949 YEECLKCGMNGYVSKPFEEENLYKEVARFFK-KP 981
|
Source: Cucurbita maxima Species: Cucurbita maxima Genus: Cucurbita Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | ||||||
| TAIR|locus:2059718 | 1080 | WOL "WOODEN LEG" [Arabidopsis | 0.905 | 0.843 | 0.697 | 0.0 | |
| TAIR|locus:2015964 | 1036 | HK3 "histidine kinase 3" [Arab | 0.555 | 0.539 | 0.542 | 4.6e-253 | |
| TAIR|locus:2177261 | 1176 | HK2 "histidine kinase 2" [Arab | 0.561 | 0.480 | 0.543 | 1.6e-252 | |
| TIGR_CMR|SO_0859 | 1765 | SO_0859 "sensory box histidine | 0.155 | 0.088 | 0.429 | 3.3e-60 | |
| DICTYBASE|DDB_G0280961 | 2150 | dhkA "histidine kinase A" [Dic | 0.168 | 0.079 | 0.36 | 1.2e-58 | |
| UNIPROTKB|Q9KSB0 | 1331 | VC_1349 "Sensory box sensor hi | 0.163 | 0.123 | 0.401 | 3.3e-56 | |
| TIGR_CMR|VC_1349 | 1331 | VC_1349 "sensory box sensor hi | 0.163 | 0.123 | 0.401 | 3.3e-56 | |
| UNIPROTKB|P0AEC5 | 918 | barA [Escherichia coli K-12 (t | 0.163 | 0.178 | 0.445 | 2.3e-53 | |
| DICTYBASE|DDB_G0277883 | 2062 | dhkJ "histidine kinase J" [Dic | 0.150 | 0.073 | 0.477 | 4.4e-50 | |
| TAIR|locus:2159669 | 922 | HK5 "histidine kinase 5" [Arab | 0.156 | 0.170 | 0.365 | 1.9e-49 |
| TAIR|locus:2059718 WOL "WOODEN LEG" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3155 (1115.7 bits), Expect = 0., P = 0.
Identities = 656/941 (69%), Positives = 742/941 (78%)
Query: 11 HSVALKVNEQ-----MGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N MG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NKI
Sbjct: 96 HSVAVKMNNNNNNDLMGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKI 155
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTA
Sbjct: 156 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 215
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 216 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLE 275
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TVEERI
Sbjct: 276 SLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERI 335
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++ D SL H
Sbjct: 336 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSH 395
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 396 ESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDD 455
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA QRDYAQTAQ
Sbjct: 456 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 515
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNK IELAVFVS
Sbjct: 516 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVS 575
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K +++ + LNGG
Sbjct: 576 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDESEPKNALNGGV 633
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+EE + S +NTLSG EAADGRNSWD FKHL+ E S I S +V
Sbjct: 634 SEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVR 684
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
LMV +EDTGIGIPL AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI+F+S
Sbjct: 685 LMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFIS 744
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
RP +GSTF FTAV KC K +K+ E LP FKG+KA+VVD KPVRAAVT+YH+
Sbjct: 745 RPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHM 804
Query: 723 NRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
RLGI V + +S+K A A +NG + K Q D+ILVEKD WIS ED+ +LL
Sbjct: 805 KRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQLDMILVEKDSWISTEDNDSEIRLL 863
Query: 779 DWKPNGHVF-KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 864 NSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELR 923
Query: 838 NKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
RQ P GSS + LL GKKILVVDDN VNR VAAGALKKFGA V CA S + A
Sbjct: 924 KTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVA 980
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L LQ PH FDACFMDIQMP+MDGFEATR+IR ME + E+
Sbjct: 981 LGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEK 1021
|
|
| TAIR|locus:2015964 HK3 "histidine kinase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 4.6e-253, Sum P(2) = 4.6e-253
Identities = 325/599 (54%), Positives = 418/599 (69%)
Query: 30 IQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
++ N+AW K +V+W++ +S+ + + +RKE L SMCD+RARMLQDQFNV+
Sbjct: 85 VKFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVS 144
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
+NHV A++IL+STFH+ K PSA+DQ TF+EYT RT+FERPL SGVAYA RV+ ++RE+FE
Sbjct: 145 MNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFE 204
Query: 150 RQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEE 193
RQ G TI M S EPSP+++EYAPV+F Q+ +SHV SLDM+SG+E
Sbjct: 205 RQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKE 264
Query: 194 DRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGG 253
DREN+LRAR++GK VLT PF L+ ++ LGV+LTF VYK LP +T +ERI+AT GY+GG
Sbjct: 265 DRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGG 324
Query: 254 PFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDS 313
FD+ESLVENLL QLA Q ILVNVYD+TN S P+ MYG N D L S L FGD
Sbjct: 325 VFDIESLVENLLQQLASKQTILVNVYDITNHSQPISMYGT-NVSAD-GLERVSPLIFGDP 382
Query: 314 FRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV 373
RKH+M CR+ QK P ++ T+F + VI LLV +I++ I KVE+D KM++LK
Sbjct: 383 LRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKK 442
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQICGKALIAL 433
+AEAADVAKSQFLATVSHEIRTPMNG+LGML Q+DY +TAQ GKAL++L
Sbjct: 443 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSL 502
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
INEVLD+AKIE+ KLELE V F+LR ILDDVLSLFS KS+ KG+ELAV++SD+VP+ ++G
Sbjct: 503 INEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIG 562
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGRFRQI+TNL+GNS+KFTE+GHIFV VHL + D ET + E
Sbjct: 563 DPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESIDG--ET---ASSPE------- 610
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEG---FQSNASIINMMASNGGSEDVTLMVCVE 609
+TLSGL AD + SW+ FK + G F+ + IN++ S ED + + VE
Sbjct: 611 ---STLSGLPVADRQRSWENFK-AFSSNGHRSFEPSPPDINLIVS---VEDTGVGIPVE 662
|
|
| TAIR|locus:2177261 HK2 "histidine kinase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1492 (530.3 bits), Expect = 1.6e-252, Sum P(2) = 1.6e-252
Identities = 322/592 (54%), Positives = 403/592 (68%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L+L I+G S+ + +EE ++R+E L +MCD+RAR+LQDQFNV++NHVHA
Sbjct: 230 WRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHA 289
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L+ILVSTFH+ K PSA+DQ TF EYT RT FERPL SGVAYA +V ++RE+FE++HG
Sbjct: 290 LSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWA 349
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSGEEDRENILRA
Sbjct: 350 IKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRA 409
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+R++AT GY+G +D+ SLV
Sbjct: 410 RASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLV 469
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I V+VYD TN S + MYG ++ GD+S H S LDFGD R H+M C
Sbjct: 470 EKLLHQLASKQTIAVDVYDTTNTSGLIKMYG--SEIGDISEQHISSLDFGDPSRNHEMHC 527
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+T + + VI LVGYILY A I VE+D KM+ELK RAEAAD+A
Sbjct: 528 RFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIA 587
Query: 382 KSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML Q DYAQTA GK L +LINEVLD+A
Sbjct: 588 KSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQA 647
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELE V F++R ILD+V SL S K+ KGIELAV+VS +VP+ V+GDP RFRQI
Sbjct: 648 KIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQI 707
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ERGHIF+ VHLA+ +D +L G SG T+S
Sbjct: 708 ITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIED-AVLKQRLALGCSESG----ETVS 762
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
G A + SW FK E N+ I ++ + ED + + V+ G
Sbjct: 763 GFPAVNAWGSWKNFKTCYSTES--QNSDQIKLLVT---VEDTGVGIPVDAQG 809
|
|
| TIGR_CMR|SO_0859 SO_0859 "sensory box histidine kinase/response regulator" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 3.3e-60, Sum P(5) = 3.3e-60
Identities = 67/156 (42%), Positives = 101/156 (64%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM Q++Y + + ++L+
Sbjct: 1030 KDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++E V F L +L+D+ +FSE++ K IEL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
LGDP R Q++ NL+ N++KFTERG + + + L E+
Sbjct: 1150 LGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1185
|
|
| DICTYBASE|DDB_G0280961 dhkA "histidine kinase A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.2e-58, Sum P(5) = 1.2e-58
Identities = 63/175 (36%), Positives = 108/175 (61%)
Query: 368 MQEL---KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQ 424
MQ L K AE A+ AKS F+ATVSHE+RTP++G++G+ QRDY QT Q
Sbjct: 1370 MQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETNLSEEQRDYVQTIQ 1429
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+AL+ +IN++LD +K+E+R+L++E + F++ V+ + S + N +++ + V
Sbjct: 1430 KSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSVAA-NDDVDILLRVP 1488
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
VP + GD R RQ++ NL+ N++KFT RGH+ + + + ++ T+ ++E +
Sbjct: 1489 PNVPRIIFGDAMRMRQVLLNLLSNAIKFTSRGHVLTDISVDD-SIPPTNTEEEII 1542
|
|
| UNIPROTKB|Q9KSB0 VC_1349 "Sensory box sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 3.3e-56, Sum P(4) = 3.3e-56
Identities = 67/167 (40%), Positives = 100/167 (59%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDY 419
++ED+ K +E A+A AK FLA +SHEIRTPMN ILGM QR Y
Sbjct: 588 EMEDELRKAKEA---ADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKY 644
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
K L+ +IN++LD +K+EA KL +E + FNL +LD+V ++ S K++ KGIE
Sbjct: 645 VTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEF 704
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ + +P ++GDP R Q++ NL GN+VKFT +G I + +++
Sbjct: 705 LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQ 751
|
|
| TIGR_CMR|VC_1349 VC_1349 "sensory box sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 3.3e-56, Sum P(4) = 3.3e-56
Identities = 67/167 (40%), Positives = 100/167 (59%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDY 419
++ED+ K +E A+A AK FLA +SHEIRTPMN ILGM QR Y
Sbjct: 588 EMEDELRKAKEA---ADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKY 644
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
K L+ +IN++LD +K+EA KL +E + FNL +LD+V ++ S K++ KGIE
Sbjct: 645 VTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEF 704
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ + +P ++GDP R Q++ NL GN+VKFT +G I + +++
Sbjct: 705 LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQ 751
|
|
| UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 2.3e-53, Sum P(4) = 2.3e-53
Identities = 74/166 (44%), Positives = 109/166 (65%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G QRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIE 446
|
|
| DICTYBASE|DDB_G0277883 dhkJ "histidine kinase J" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 4.4e-50, Sum P(4) = 4.4e-50
Identities = 73/153 (47%), Positives = 98/153 (64%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQICGKALI 431
K AEAA AKS F+A +SHEIRTPMNGI+GM QR+Y Q +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA +LEL+ F+LRA L D L S ++ K IEL ++ VP+ +
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHI--FVKV 522
+GDPGR RQI+ NLVGN++KFT +G + VKV
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKV 1489
|
|
| TAIR|locus:2159669 HK5 "histidine kinase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 1.9e-49, Sum P(3) = 1.9e-49
Identities = 60/164 (36%), Positives = 94/164 (57%)
Query: 384 QFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTAQICGKALIALINEVLDRAKI 443
Q LAT+SHEIR+P++G++GM QR G ++ LIN++LD +K+
Sbjct: 369 QMLATMSHEIRSPLSGVVGMAEILSTTKLDKEQRQLLNVMISSGDLVLQLINDILDLSKV 428
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
E+ + LEA F R ++ VL + S K + L ++D VP V+GD R RQI+T
Sbjct: 429 ESGVMRLEATKFRPREVVKHVLQT-AAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILT 487
Query: 504 NLVGNSVKFTERGHIFVKVH-LAERTMVKTDAKDETLLNGGTEE 546
NL+ N++KFT G++ +K+ ++E + V+ +A LN TEE
Sbjct: 488 NLISNAIKFTHEGNVGIKLQVISEPSFVRDNA-----LNADTEE 526
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C5U0 | AHK4_ARATH | 3, ., 1, ., 3, ., 1, 6 | 0.6997 | 0.9612 | 0.8953 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.3.16 | 0.991 |
| 3rd Layer | 3.1.3 | 0.976 |
| 3rd Layer | 2.7.13 | 0.976 |
| 3rd Layer | 2.7.13.3 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | CRE1B | histidine kinase cytokinin receptor (981 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1006 | |||
| PRK11107 | 919 | PRK11107, PRK11107, hybrid sensory histidine kinas | 2e-48 | |
| PRK11107 | 919 | PRK11107, PRK11107, hybrid sensory histidine kinas | 3e-48 | |
| TIGR02956 | 968 | TIGR02956, TMAO_torS, TMAO reductase sytem sensor | 2e-44 | |
| pfam03924 | 190 | pfam03924, CHASE, CHASE domain | 3e-44 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 7e-38 | |
| PRK11466 | 914 | PRK11466, PRK11466, hybrid sensory histidine kinas | 1e-32 | |
| COG0642 | 336 | COG0642, BaeS, Signal transduction histidine kinas | 5e-32 | |
| smart01079 | 176 | smart01079, CHASE, This domain is found in the ext | 4e-31 | |
| cd00156 | 113 | cd00156, REC, Signal receiver domain; originally t | 2e-28 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 3e-27 | |
| COG0784 | 130 | COG0784, CheY, FOG: CheY-like receiver [Signal tra | 1e-26 | |
| pfam00072 | 111 | pfam00072, Response_reg, Response regulator receiv | 1e-23 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 9e-23 | |
| PRK09959 | 1197 | PRK09959, PRK09959, hybrid sensory histidine kinas | 1e-21 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 2e-20 | |
| pfam00512 | 66 | pfam00512, HisKA, His Kinase A (phospho-acceptor) | 8e-20 | |
| TIGR02956 | 968 | TIGR02956, TMAO_torS, TMAO reductase sytem sensor | 1e-19 | |
| smart00388 | 66 | smart00388, HisKA, His Kinase A (phosphoacceptor) | 1e-19 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 3e-19 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 4e-19 | |
| TIGR02956 | 968 | TIGR02956, TMAO_torS, TMAO reductase sytem sensor | 5e-17 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 7e-16 | |
| cd00082 | 65 | cd00082, HisKA, Histidine Kinase A (dimerization/p | 1e-15 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 4e-15 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 8e-15 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 7e-14 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 9e-14 | |
| COG0745 | 229 | COG0745, OmpR, Response regulators consisting of a | 2e-13 | |
| COG2197 | 211 | COG2197, CitB, Response regulator containing a Che | 2e-13 | |
| COG2204 | 464 | COG2204, AtoC, Response regulator containing CheY- | 4e-13 | |
| TIGR02966 | 333 | TIGR02966, phoR_proteo, phosphate regulon sensor k | 1e-12 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 1e-11 | |
| smart00448 | 55 | smart00448, REC, cheY-homologous receiver domain | 2e-11 | |
| PRK11361 | 457 | PRK11361, PRK11361, acetoacetate metabolism regula | 3e-11 | |
| PRK11466 | 914 | PRK11466, PRK11466, hybrid sensory histidine kinas | 4e-11 | |
| COG2205 | 890 | COG2205, KdpD, Osmosensitive K+ channel histidine | 2e-10 | |
| COG5002 | 459 | COG5002, VicK, Signal transduction histidine kinas | 2e-10 | |
| COG3706 | 435 | COG3706, PleD, Response regulator containing a Che | 5e-10 | |
| PRK10604 | 433 | PRK10604, PRK10604, sensor protein RstB; Provision | 7e-10 | |
| COG4251 | 750 | COG4251, COG4251, Bacteriophytochrome (light-regul | 7e-10 | |
| PRK10610 | 129 | PRK10610, PRK10610, chemotaxis regulatory protein | 1e-09 | |
| TIGR01386 | 457 | TIGR01386, cztS_silS_copS, heavy metal sensor kina | 1e-09 | |
| TIGR02966 | 333 | TIGR02966, phoR_proteo, phosphate regulon sensor k | 2e-09 | |
| PRK11360 | 607 | PRK11360, PRK11360, sensory histidine kinase AtoS; | 2e-09 | |
| PRK09959 | 1197 | PRK09959, PRK09959, hybrid sensory histidine kinas | 5e-09 | |
| COG2205 | 890 | COG2205, KdpD, Osmosensitive K+ channel histidine | 5e-09 | |
| PRK09835 | 482 | PRK09835, PRK09835, sensor kinase CusS; Provisiona | 2e-08 | |
| PRK09303 | 380 | PRK09303, PRK09303, adaptive-response sensory kina | 3e-08 | |
| COG4251 | 750 | COG4251, COG4251, Bacteriophytochrome (light-regul | 4e-08 | |
| PRK11006 | 430 | PRK11006, phoR, phosphate regulon sensor protein; | 5e-08 | |
| PRK09959 | 1197 | PRK09959, PRK09959, hybrid sensory histidine kinas | 7e-08 | |
| COG3437 | 360 | COG3437, COG3437, Response regulator containing a | 7e-08 | |
| PRK10365 | 441 | PRK10365, PRK10365, transcriptional regulatory pro | 1e-07 | |
| TIGR01818 | 463 | TIGR01818, ntrC, nitrogen regulation protein NR(I) | 1e-07 | |
| PRK09581 | 457 | PRK09581, pleD, response regulator PleD; Reviewed | 2e-07 | |
| PRK09303 | 380 | PRK09303, PRK09303, adaptive-response sensory kina | 3e-07 | |
| PRK10549 | 466 | PRK10549, PRK10549, signal transduction histidine- | 3e-07 | |
| PRK09467 | 435 | PRK09467, envZ, osmolarity sensor protein; Provisi | 4e-07 | |
| PRK10816 | 223 | PRK10816, PRK10816, DNA-binding transcriptional re | 8e-07 | |
| COG3279 | 244 | COG3279, LytT, Response regulator of the LytR/AlgR | 1e-06 | |
| PRK09470 | 461 | PRK09470, cpxA, two-component sensor protein; Prov | 2e-06 | |
| PRK13837 | 828 | PRK13837, PRK13837, two-component VirA-like sensor | 2e-06 | |
| PRK11073 | 348 | PRK11073, glnL, nitrogen regulation protein NR(II) | 3e-06 | |
| PRK11100 | 475 | PRK11100, PRK11100, sensory histidine kinase CreC; | 3e-06 | |
| COG5002 | 459 | COG5002, VicK, Signal transduction histidine kinas | 6e-06 | |
| PRK10643 | 222 | PRK10643, PRK10643, DNA-binding transcriptional re | 6e-06 | |
| PRK09468 | 239 | PRK09468, ompR, osmolarity response regulator; Pro | 6e-06 | |
| PRK13557 | 540 | PRK13557, PRK13557, histidine kinase; Provisional | 8e-06 | |
| CHL00148 | 240 | CHL00148, orf27, Ycf27; Reviewed | 1e-05 | |
| TIGR02154 | 226 | TIGR02154, PhoB, phosphate regulon transcriptional | 2e-05 | |
| PRK11006 | 430 | PRK11006, phoR, phosphate regulon sensor protein; | 3e-05 | |
| PRK11083 | 228 | PRK11083, PRK11083, DNA-binding response regulator | 3e-05 | |
| TIGR01386 | 457 | TIGR01386, cztS_silS_copS, heavy metal sensor kina | 4e-05 | |
| COG4753 | 475 | COG4753, COG4753, Response regulator containing Ch | 4e-05 | |
| COG2201 | 350 | COG2201, CheB, Chemotaxis response regulator conta | 4e-05 | |
| PRK11466 | 914 | PRK11466, PRK11466, hybrid sensory histidine kinas | 5e-05 | |
| PRK15479 | 221 | PRK15479, PRK15479, transcriptional regulatory pro | 5e-05 | |
| PRK10490 | 895 | PRK10490, PRK10490, sensor protein KdpD; Provision | 7e-05 | |
| COG4192 | 673 | COG4192, COG4192, Signal transduction histidine ki | 7e-05 | |
| COG3852 | 363 | COG3852, NtrB, Signal transduction histidine kinas | 8e-05 | |
| PRK10766 | 221 | PRK10766, PRK10766, DNA-binding transcriptional re | 1e-04 | |
| COG4191 | 603 | COG4191, COG4191, Signal transduction histidine ki | 1e-04 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 2e-04 | |
| PRK10923 | 469 | PRK10923, glnG, nitrogen regulation protein NR(I); | 2e-04 | |
| PRK10364 | 457 | PRK10364, PRK10364, sensor protein ZraS; Provision | 2e-04 | |
| PRK00742 | 354 | PRK00742, PRK00742, chemotaxis-specific methyleste | 2e-04 | |
| PRK09390 | 202 | PRK09390, fixJ, response regulator FixJ; Provision | 2e-04 | |
| PRK11100 | 475 | PRK11100, PRK11100, sensory histidine kinase CreC; | 5e-04 | |
| COG4191 | 603 | COG4191, COG4191, Signal transduction histidine ki | 5e-04 | |
| PRK12555 | 337 | PRK12555, PRK12555, chemotaxis-specific methyleste | 5e-04 | |
| PRK09835 | 482 | PRK09835, PRK09835, sensor kinase CusS; Provisiona | 7e-04 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 8e-04 | |
| PRK10549 | 466 | PRK10549, PRK10549, signal transduction histidine- | 8e-04 | |
| PRK10364 | 457 | PRK10364, PRK10364, sensor protein ZraS; Provision | 0.001 | |
| PRK11086 | 542 | PRK11086, PRK11086, sensory histidine kinase DcuS; | 0.001 | |
| COG3290 | 537 | COG3290, CitA, Signal transduction histidine kinas | 0.001 | |
| PRK10490 | 895 | PRK10490, PRK10490, sensor protein KdpD; Provision | 0.002 | |
| PRK10618 | 894 | PRK10618, PRK10618, phosphotransfer intermediate p | 0.002 | |
| TIGR02938 | 494 | TIGR02938, nifL_nitrog, nitrogen fixation negative | 0.002 | |
| COG3852 | 363 | COG3852, NtrB, Signal transduction histidine kinas | 0.003 | |
| PRK10815 | 485 | PRK10815, PRK10815, sensor protein PhoQ; Provision | 0.003 | |
| PRK10336 | 219 | PRK10336, PRK10336, DNA-binding transcriptional re | 0.004 |
| >gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 2e-48
Identities = 108/400 (27%), Positives = 159/400 (39%), Gaps = 58/400 (14%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
V L V + DTGIGI Q ++F F QAD+S SR +GGTG+GL I++ LV M G I
Sbjct: 441 TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDI 500
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP--GFKGLKAVVVDEKPVRAAV 717
SF S+P GSTF F D+ + D P G + + V+ A
Sbjct: 501 SFHSQPNRGSTFWFHLPL---------DLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQA 551
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
T L+ + V S ++ DI+L+ + + +L
Sbjct: 552 TLDILSETPLEVTYSPTLSQLPEA------------HYDILLLGLPVTFREPLTMLHERL 599
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
K LIL + ++ K G AD + KPL + L L E
Sbjct: 600 AKAKS-----MTDFLILALPCHEQVLAEQLKQDG-ADACLSKPLSHTR----LLPAL-LE 648
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+ + + L ++ VDDN N + L++ V S A++
Sbjct: 649 PCHHKQPPLLPPTDESRLPL---TVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVE 705
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+ + FD MDIQMP MDG A IRQ+ N PI
Sbjct: 706 QAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPHNQNT--------------------PI 744
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+A+TA + + L GMD Y++KP +E L + L ++
Sbjct: 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRY 784
|
Length = 919 |
| >gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 3e-48
Identities = 78/154 (50%), Positives = 110/154 (71%), Gaps = 2/154 (1%)
Query: 372 KVRA-EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
K RA EAA + KS+FLA +SHE+RTP+NG++G L T L+ TQRDY QT + L
Sbjct: 283 KKRAQEAARI-KSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNL 341
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
+A+IN++LD +K+EA KL LE + F+LR LD+V++L + + KG+EL + + VP+
Sbjct: 342 LAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDN 401
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
V+GDP R +QIITNLVGN++KFTE G+I + V L
Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTESGNIDILVEL 435
|
Length = 919 |
| >gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-44
Identities = 72/154 (46%), Positives = 107/154 (69%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ AE A+ AKS FLAT+SHEIRTP+NGILG L LL DT L+S Q+ Y Q G++L+
Sbjct: 454 RAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLL 513
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++N++LD +KIEA L + F+L A+LDDV L +++ KGI+L + + +++P +
Sbjct: 514 DILNDILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWW 573
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
GD R RQ++ NLVGN++KFT+RG + ++V L
Sbjct: 574 QGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLN 607
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968 |
| >gnl|CDD|217796 pfam03924, CHASE, CHASE domain | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-44
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 108 NPSALDQDTFAEYTTR--TAFERPLLSGVAYAPRVVDAQREQFERQ------HGMTITTM 159
++ + F Y P + G+ +APRV A+R FE Q I
Sbjct: 1 ASDSVSRAEFEAYANSLQLLRRLPGIQGLGWAPRVPPAERAAFEAQLRAEGFPDFNIR-- 58
Query: 160 KSEPSPIRDEYAPVMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLL 216
P+ R Y P+ Y EP++ LD+ S RE + RAR TG+ VLT P L+
Sbjct: 59 ---PAGARAPYFPI-TYIEPLAGNEAALGLDLASEPVRREALERARDTGEPVLTGPVTLV 114
Query: 217 --GSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAI 274
G G +L PVY+ P +TVEER +A G++ F ++ L+E+LL A + +
Sbjct: 115 QGGGDQRGFLLYLPVYRGGGP--TTVEERREALWGFVSAVFRLDDLLESLLLSRAEDG-L 171
Query: 275 LVNVYDMTNASDPLIMYGD 293
+ +YD ++ +D ++YG
Sbjct: 172 ALRIYDGSDGADGELLYGS 190
|
This domain is found in the extracellular portion of receptor-like proteins - such as serine/threonine kinases and adenylyl cyclases. Predicted to be a ligand binding domain. Length = 190 |
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 7e-38
Identities = 69/163 (42%), Positives = 102/163 (62%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KV + + E K RAE A+ KS+ L T+SHEIRTP+NG+LG L LL +T L++ Q D
Sbjct: 376 KVAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDL 435
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A TA+ C +L+A+IN +LD ++IE+ ++ L L +LD + +++K + L
Sbjct: 436 ADTARQCTLSLLAIINNLLDFSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTL 495
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
FV VP ++ D R RQI+ NL+GN+VKFTE G I ++V
Sbjct: 496 RTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRV 538
|
Length = 921 |
| >gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-32
Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
++ + AE A AKS FLA +SHEIRTP+ GILG LL D + QRD + G+
Sbjct: 431 RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE 490
Query: 429 ALIALINEVLDRAKIEA--RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+L+ ++N++LD + IEA + + + F R +L+ L L S + + + I LA ++D
Sbjct: 491 SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADD 550
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK 521
+P ++GDP R RQ+ITNL+ N+++FT+ G I ++
Sbjct: 551 LPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLR 585
|
Length = 914 |
| >gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 5e-32
Identities = 59/161 (36%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
+ L+ AK +FLA +SHE+RTP+ I G+L LLL+ L QR+ + + +
Sbjct: 102 ELLERLERLLRRAKREFLANISHELRTPLTAIRGLLELLLEGLLDP-QRELLEIIEEEAE 160
Query: 429 ALIALINEVLDRAKIEAR-KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+ L+N++LD +++EA KL+L L +L +L++V+ L + ++ KGIELAV + +
Sbjct: 161 RLLRLVNDLLDLSRLEAGTKLKLLLELVDLAELLEEVVRLLAPLAQEKGIELAVDLPE-- 218
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+VLGDP R RQ++ NL+ N++K+T G I + V +
Sbjct: 219 LPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDEQ 259
|
Length = 336 |
| >gnl|CDD|215015 smart01079, CHASE, This domain is found in the extracellular portion of receptor-like proteins - such as serine/threonine kinases and adenylyl cyclases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-31
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 110 SALDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFE---RQHGMTITTMKSEPS 164
++ + F + R P + G+ +APRV A+R FE R G + ++ P
Sbjct: 2 ESVSRAEFRRFALELQLNRRLPGIQGLGWAPRVPPAERAAFEAALRAGGPGLFNIRLAPD 61
Query: 165 PIRDEYAPVMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLL--GSH 219
RDEY + Y EP++ LD++S R + RAR +G+ VL+ P L+
Sbjct: 62 GERDEYFVIT-YIEPLAGNEAALGLDLLSEPVRRAALERARDSGRPVLSGPVTLVQGTGD 120
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
G +L PVY+ P R +A G++ F ++ L+E LLG L + + +Y
Sbjct: 121 GRGFLLRLPVYRGGPPT----STRREALWGFVSAVFRLDDLLEGLLGALDLPG-LDLALY 175
Query: 280 D 280
D
Sbjct: 176 D 176
|
Predicted to be a ligand binding domain. Length = 176 |
| >gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-28
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 23/128 (17%)
Query: 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEA 922
L+VDD+ + R + L+K G V A + AL L D +DI MP MDG E
Sbjct: 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLEL 59
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
RRIR+ +PI+ +TA E LK G D Y++
Sbjct: 60 LRRIRKRGP----------------------DIPIIFLTAHGDDEDAVEALKAGADDYLT 97
Query: 983 KPFEEENL 990
KPF E L
Sbjct: 98 KPFSPEEL 105
|
Length = 113 |
| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-27
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 370 ELKVRAEAADVA---KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
E K +A + A K+ F++T+SHE+RTP+NGI+G+ +LLDT+L++ QR Y +T +
Sbjct: 268 ERKRYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVS 327
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L + N+++D K+E RKL+L+ + L D+ +L ++ KG+ +
Sbjct: 328 AITLGNIFNDIIDMDKMERRKLQLDNQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLP 387
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+ D R RQI+ NL+ N+VKFT++G + V+V
Sbjct: 388 LPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRV 423
|
Length = 779 |
| >gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK-AALDKLQSPHCFDACFMDIQM 914
LL G ++LVVDD VNR + L+ G V AA + AL+ L+ D +DI M
Sbjct: 2 LLSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINM 61
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
P MDG E RR+R ++P++ +TA A + L
Sbjct: 62 PGMDGIELLRRLRARGP----------------------NIPVILLTAYADEADRERALA 99
Query: 975 CGMDGYVSKP-FEEENLYRELAKFFKSKPLS 1004
G D Y++KP F EE L L +
Sbjct: 100 AGADDYLTKPIFLEEELLAALRRLLARAAAE 130
|
Length = 130 |
| >gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-23
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+VDD+ + R + L+K G V A + AL+ L+ D +DI+MP MDG E
Sbjct: 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKR-PDLILLDIRMPGMDGLE 59
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
RRIR+ P++ +TA E LK G + ++
Sbjct: 60 LLRRIRR----------------------RPPTTPVIVLTAHGDEEDAVEALKAGANDFL 97
Query: 982 SKPFEEENLYREL 994
SKPF+ E L L
Sbjct: 98 SKPFDPEELVAAL 110
|
This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. Length = 111 |
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-23
Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
VK+E+ +QE+ AE A +KS FLATVSHE+RTP+ GI+G L LL +L
Sbjct: 427 VKMEE---SLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDR 483
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
L+ +I+++LD +KIE+ +L++E F+ R +++ + + + K +
Sbjct: 484 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVINHITANYLPLVVKKRLG 543
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
L F+ VP + GDP R +Q+I+NL+ N++KFT+ G I + V
Sbjct: 544 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHV 587
|
Length = 924 |
| >gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
I + D H ++ + +A A VAKSQFLAT+SHEIRTP++ I+G L LL + LS QR
Sbjct: 688 ITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQR 747
Query: 418 DYA-QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKG 476
A A G++L+ LI E+LD KIE+ +L+ ++ ++ + F + +K
Sbjct: 748 VEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKS 807
Query: 477 IELAVFVSDKVPEFVLG--DPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
I L+ S P+ L DP F+Q+++NL+ N++KFT G + + L
Sbjct: 808 IALS--CSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSL 855
|
Length = 1197 |
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-20
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ + + VED G GIP E++F PF + D SR GGTG+GLSI K LVEL G+I
Sbjct: 34 DGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDK-RSRKIGGTGLGLSIVKKLVELHGGEI 92
Query: 660 SFVSRPQVGSTFSFT 674
S S P G+TF+ T
Sbjct: 93 SVESEPGGGTTFTIT 107
|
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. Length = 111 |
| >gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 8e-20
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHE+RTP+ I G L LLLDT+LS QR+Y +T + L+ LIN++LD
Sbjct: 1 AKSEFLANLSHELRTPLTAIRGYLELLLDTELSEEQREYLETILRSAERLLRLINDLLDL 60
Query: 441 AKIEA 445
++IEA
Sbjct: 61 SRIEA 65
|
Dimerisation and phospho-acceptor domain of histidine kinases. Length = 66 |
| >gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-19
Identities = 70/237 (29%), Positives = 105/237 (44%), Gaps = 23/237 (9%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D +L+ VEDTG GI Q +F F QAD R GGTG+GL+IS+ LVE M G++
Sbjct: 609 DSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR--RRSGGTGLGLAISQRLVEAMDGELG 666
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S VGS F FT + K ED DLPP + ++V++ V V Q
Sbjct: 667 VESELGVGSCFWFTLPLTRGKPA--EDSATLTVIDLPP----QRVLLVEDNEVNQMVAQG 720
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW-ISGEDSGFNAQLLD 779
L RLG V ++ S + A + F D+ L++ + G QL
Sbjct: 721 FLTRLGHKVTLAESGQSAL------ECFHQHAF--DLALLDINLPDGDGVT--LLQQLRA 770
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ K I + ++ ++ + A GF D + KP+ + A + +L+
Sbjct: 771 IYGAKNEV---KFIAFSAHVFNEDVAQYLAAGF-DGFLAKPVVEEQLTAMIAVILAG 823
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968 |
| >gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-19
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AK +FLA +SHE+RTP+ I G L LLLDT+LS QR+Y +T + L+ LIN++LD
Sbjct: 1 AKREFLANLSHELRTPLTAIRGYLELLLDTELSEEQREYLETILREAERLLRLINDLLDL 60
Query: 441 AKIEA 445
++IEA
Sbjct: 61 SRIEA 65
|
Dimerisation and phosphoacceptor domain of histidine kinases. Length = 66 |
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-19
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ L + VED G GIP ER+F F +D S SR GGTG+GLSI K LVEL G+I
Sbjct: 30 DGDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVKKLVELHGGRI 87
Query: 660 SFVSRPQVGSTFSFT 674
S P G+TF+ T
Sbjct: 88 EVESEPGGGTTFTIT 102
|
Length = 103 |
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-19
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ L + VED GIGIP ++F PF + DSS SR GGTG+GLSI + LVEL G I
Sbjct: 34 DGGRLRITVEDNGIGIPPEDLPKIFEPFFRTDSS-SRKVGGTGLGLSIVRKLVELHGGTI 92
Query: 660 SFVSRPQVGSTFSFT 674
+ S P G+TF+FT
Sbjct: 93 TVESEPGGGTTFTFT 107
|
This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 111 |
| >gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 5e-17
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 20/145 (13%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L +++L+V+DN VN+MVA G L + G V A S ++AL+ H FD +DI +P+
Sbjct: 700 LPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPD 758
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
DG +++R + NE + +A +A V + + L G
Sbjct: 759 GDGVTLLQQLRAIYGAKNE-------------------VKFIAFSAHVFNEDVAQYLAAG 799
Query: 977 MDGYVSKPFEEENLYRELAKFFKSK 1001
DG+++KP EE L +A
Sbjct: 800 FDGFLAKPVVEEQLTAMIAVILAGG 824
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968 |
| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 7e-16
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 30/231 (12%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQA-DSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
VED+GIGIP +++F + Q DS + GTGIGL++SK L + M G I+ S
Sbjct: 435 VEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEG 494
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ T E V + +D+P L ++V++ + V + L +LG
Sbjct: 495 KGSCFTLTIHAPAVAEEVED---AFDEDDMP--LPALNILLVEDIELNVIVARSVLEKLG 549
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQP---DIILVEKDCWISGED-SGFN-AQLLDWK 781
V D + T K L + F P D++L++ I D +G + A+ L +
Sbjct: 550 NSV-------DVAMTGKEAL----EMFDPDEYDLVLLD----IQLPDMTGLDIAREL--R 592
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
LP L+ L N+ KD+ + AG D V+ KPL + A +++
Sbjct: 593 ERYPREDLPPLVALTANVLKDKKEYLDAG--MDDVLSKPLSVPALTAMIKK 641
|
Length = 779 |
| >gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS-TQRDYAQTAQICGKALIALINEVLD 439
AK +FLA VSHE+RTP+ I G L LL + L QR+Y + + + L+ LIN++LD
Sbjct: 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLD 62
Query: 440 RAK 442
++
Sbjct: 63 LSR 65
|
They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes. Length = 65 |
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-15
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+IL+VDD NR + L + G V AAS AL+ + H FD MDI+MP +DG
Sbjct: 692 QILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGL 750
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E T+ R D D I+A+TA+ C K GM+ Y
Sbjct: 751 ETTQLWR-----------------DDPNNLDP-DCMIVALTANAAPEEIHRCKKAGMNHY 792
Query: 981 VSKP 984
++KP
Sbjct: 793 LTKP 796
|
Length = 921 |
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-15
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTG+GIP R+F PF Q + R++ GTG+GL+I + L+ +M G IS S
Sbjct: 594 LSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDS 653
Query: 664 RPQVGSTFS 672
P +GS F+
Sbjct: 654 EPGMGSQFT 662
|
Length = 924 |
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-14
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+ L VEDTG GI + Q+++F PF QAD+ H GTG+GL+I+ L ++M G+
Sbjct: 540 RHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGLTIASSLAKMMGGE 595
Query: 659 ISFVSRPQVGSTFSF 673
++ S P VGS FS
Sbjct: 596 LTLFSTPGVGSCFSL 610
|
Length = 921 |
| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 9e-14
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 21/146 (14%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L IL+V+D +N +VA L+K G +V+ A + K AL+ P +D +DIQ+P+
Sbjct: 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPD 581
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
M G + R +R+ R++L P++A+TA+V+ E L G
Sbjct: 582 MTGLDIARELRERYP------------------REDLP-PLVALTANVLKDK-KEYLDAG 621
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
MD +SKP L + KF+ ++
Sbjct: 622 MDDVLSKPLSVPALTAMIKKFWDTQD 647
|
Length = 779 |
| >gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 35/138 (25%)
Query: 860 KKILVVDDN-GVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+IL+V+D+ + ++ L++ G V+ AA + AL+ + D +D+ +P++D
Sbjct: 1 MRILLVEDDPELAELLKE-YLEEEGYEVDVAADGEEALEAAREQ--PDLVLLDLMLPDLD 57
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECL 973
G E RR+R + PI+ +TA D + L
Sbjct: 58 GLELCRRLRAKKGSG---------------------PPIIVLTARDDEEDRVLG-----L 91
Query: 974 KCGMDGYVSKPFEEENLY 991
+ G D Y++KPF L
Sbjct: 92 EAGADDYLTKPFSPRELL 109
|
Length = 229 |
| >gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+L+VDD+ + R L+ V A++ + ALD + D +D+ MP MD
Sbjct: 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKP-DVVLLDLSMPGMD 60
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EA +++R + ++ +TA A L+ G D
Sbjct: 61 GLEALKQLRA----------------------RGPDIKVVVLTAHDDPAYVIRALRAGAD 98
Query: 979 GYVSKPFEEENL 990
GY+ K E L
Sbjct: 99 GYLLKDASPEEL 110
|
Length = 211 |
| >gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 29/136 (21%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
+ILVVDD+ R + AL+ G V A SA+ AL+ L FD +DI+MP M
Sbjct: 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP-FDLVLLDIRMPGM 61
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLK 974
DG E + I+ + LP++ MT H D E L+
Sbjct: 62 DGLELLKEIKSR----------------------DPDLPVIVMTG---HGDIDTAVEALR 96
Query: 975 CGMDGYVSKPFEEENL 990
G ++ KPF+ + L
Sbjct: 97 LGAFDFLEKPFDLDRL 112
|
Length = 464 |
| >gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDT--DLSSTQRDYAQTAQICGKALIALINE 436
+ + F+A VSHE+RTP+ + G L L D + + + + +L+ +
Sbjct: 111 EQMRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVED 170
Query: 437 VLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPG 496
+L +++E+ LE ++ A+LD + S+ K ++ + V VLGD
Sbjct: 171 LLTLSRLESAASPLEDEPVDMPALLDHLRDEAEALSQGKNHQITFEIDGGVD--VLGDED 228
Query: 497 RFRQIITNLVGNSVKFT-ERGHIFV 520
R +NLV N++K+T E G I V
Sbjct: 229 ELRSAFSNLVSNAIKYTPEGGTITV 253
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154) [Signal transduction, Two-component systems]. Length = 333 |
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
ILVVDD+ +NR + A L G + A AL+ L H D D+ MP MDG+
Sbjct: 803 MILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLTDVNMPNMDGY 861
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
T+R+RQ+ L LP++ +TA+ + CL+ GMD
Sbjct: 862 RLTQRLRQL----------------------GLTLPVIGVTANALAEEKQRCLEAGMDSC 899
Query: 981 VSKP 984
+SKP
Sbjct: 900 LSKP 903
|
Length = 924 |
| >gnl|CDD|214668 smart00448, REC, cheY-homologous receiver domain | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
+ILVVDD+ + R + L+K G V+ A + AL+ L+ D +DI MP
Sbjct: 1 MRILVVDDDPLLRELLKALLEKEGYEVDEATDGEEALELLKEEK-PDLILLDIMMP 55
|
CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. Length = 55 |
| >gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 35/136 (25%)
Query: 861 KILVVDD-NGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF-----DACFMDIQM 914
+IL+VDD + V RM++ A G CA + + AL H F D MDI+M
Sbjct: 6 RILIVDDEDNVRRMLST-AFALQGFETHCANNGRTAL------HLFADIHPDVVLMDIRM 58
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PEMDG +A + +R E++ P++ MTA T E L+
Sbjct: 59 PEMDGIKALKEMRSHETRT----------------------PVILMTAYAEVETAVEALR 96
Query: 975 CGMDGYVSKPFEEENL 990
CG YV KPF+ + L
Sbjct: 97 CGAFDYVIKPFDLDEL 112
|
Length = 457 |
| >gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 4e-11
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
++ +V VED+G GI + +F PF+Q S GGTG+GL+IS L + M G
Sbjct: 587 RTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV----SGKRGGTGLGLTISSRLAQAMGG 642
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
++S S P+VGS F V + + Q+ D GL+ +++++ P+ +
Sbjct: 643 ELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLD------GLRLLLIEDNPLTQRI 696
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNG 745
T LN G V + A T +N
Sbjct: 697 TAEMLNTSGAQVVAVGNAAQALETLQNS 724
|
Length = 914 |
| >gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 369 QELKVRAEA-ADVAKSQFLATVSHEIRTPMNGILGMLALLLD--TDLSSTQRDYAQTAQI 425
+ + R A + +S LA++SH++RTP+ I+G LL LS R + I
Sbjct: 646 EAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRA-ELLSSI 704
Query: 426 CGKA--LIALINEVLDRAKIEAR--KLELEAVLFNLRAILDDVLS--LFSEKSRNKGIEL 479
++ L L+ +LD ++++ L+L+ VL +++V+ L + R G ++
Sbjct: 705 REESERLTRLVTNLLDMTRLQSGGVNLKLDWVL------VEEVVGEALQRLRKRFTGHKI 758
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
V V +P + D Q++ NL+ N++K+ G
Sbjct: 759 VVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPG 794
|
Length = 890 |
| >gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
+ + + D G+GIP E++F F + D + SR GGTG+GL+I+K +V+ G+I S
Sbjct: 375 VEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAES 434
Query: 664 RPQVGSTFSFTAVFGKCKEYVFED 687
G+TFSFT + +++
Sbjct: 435 EEGKGTTFSFTLPYSGEAGDDWDE 458
|
Length = 459 |
| >gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 26/160 (16%)
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLR---GKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
S + R R G LL KKILVVDD+ R L+ G V A
Sbjct: 106 CSIDELRL--REETGGELGVSPLLPEDAPKKILVVDDDATQRERLRRILQVEGFRVVEAT 163
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ AL +L D +D MP+MDG E R+RQ+E R
Sbjct: 164 DGEEALLQLAELP-PDLVLLDANMPDMDGLELCTRLRQLE-------------------R 203
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+PI+ +++ + G++ Y++KP EE L
Sbjct: 204 TR-DIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGEL 242
|
Length = 435 |
| >gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VED G GIP +ERVF PF++ D S R GG G+GL+I + M G ++
Sbjct: 354 VEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELG 413
Query: 668 GSTFSF 673
G+ FSF
Sbjct: 414 GARFSF 419
|
Length = 433 |
| >gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-10
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V D GIGI + ER+F+ F Q S Y GTG+GL+I K + E +G+I S P
Sbjct: 674 VRDNGIGIDPAYFERIFVIF-QRLHSRDE-YLGTGLGLAICKKIAERHQGRIWVESTPGE 731
Query: 668 GSTFSFT 674
GSTF FT
Sbjct: 732 GSTFYFT 738
|
Length = 750 |
| >gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-09
Identities = 46/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ F D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIRA----------------DGAMSA----LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
|
Length = 129 |
| >gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ-RDYAQTAQICGKALIA 432
R E A SQF A ++HE+RTP+ +LG + L + + R+ ++ + L
Sbjct: 233 RLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSR 292
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
+++++L A+ + +L LE V +L A L V F + +G+ + V V
Sbjct: 293 MVSDMLFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEGE----GLVR 348
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GDP FR+ I+NL+ N+++ T G + V + R
Sbjct: 349 GDPQMFRRAISNLLSNALRHTPDGGT-ITVRIERR 382
|
Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Length = 457 |
| >gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI R+ F + D S SR GGTG+GL+I K ++ ++ S
Sbjct: 266 VTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGK 325
Query: 668 GSTFSFT 674
GSTFSF
Sbjct: 326 GSTFSFI 332
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154) [Signal transduction, Two-component systems]. Length = 333 |
| >gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D + V +ED G GI +++F PF + GTG+GL++S+ ++ G I
Sbjct: 531 DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK------GTGLGLALSQRIINAHGGDIE 584
Query: 661 FVSRPQVGSTFSF 673
S P VG+TF+
Sbjct: 585 VESEPGVGTTFTL 597
|
Length = 607 |
| >gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 5e-09
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 33/170 (19%)
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
QQV + E K + +P S IL+ DD+ NR++ L G V+ A
Sbjct: 939 SQQVATVEAKAEQPITLPEKLS----------ILIADDHPTNRLLLKRQLNLLGYDVDEA 988
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
AL K+ H +D D+ MP MDGFE TR++R+ S
Sbjct: 989 TDGVQALHKVSMQH-YDLLITDVNMPNMDGFELTRKLREQNSS----------------- 1030
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LPI +TA+ ++ L CGM+ + KP + L L++ +
Sbjct: 1031 -----LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075
|
Length = 1197 |
| >gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-09
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 577 LID-AEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTS 635
L++ A + S I + N G E ++ V D G GIP ER+F F + + ++
Sbjct: 783 LLENALKYAPPGSEIRI---NAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA 839
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
G G+GL+I + +VE G IS + P G+ F FT
Sbjct: 840 T--RGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFT 876
|
Length = 890 |
| >gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD---------LSST 415
F+ M E R E +S F A ++HEIRTP+ ++ + L L S
Sbjct: 248 FNHMIE---RIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSN 304
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
+ + A+ +++++L A+ + +L E + +L + V F + +
Sbjct: 305 LEELTRMAK--------MVSDMLFLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEER 356
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
G+EL FV D P V GDP R+ I+NL+ N++++T G + V E
Sbjct: 357 GVELR-FVGD--PCQVAGDPLMLRRAISNLLSNALRYTPAGEA-ITVRCQE 403
|
Length = 482 |
| >gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 606 VCVEDTGIGIPLSAQERVFMPF--MQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
V + DTG GIP QER+F + D T G GIGLS+ + +V + GQI S
Sbjct: 308 VSICDTGPGIPEEEQERIFEDRVRLPRDEGTE----GYGIGLSVCRRIVRVHYGQIWVDS 363
Query: 664 RPQVGSTFSFT 674
P GS F FT
Sbjct: 364 EPGQGSCFHFT 374
|
Length = 380 |
| >gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 23/218 (10%)
Query: 313 SFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELK 372
SF K R S PW+ + L + +VG +L A ++ +L+
Sbjct: 469 SFELWKETVRLQ---SQPWSEVEIEAALELRKAIVGIVLRHAE-----------ELAQLR 514
Query: 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL---LDTDLSSTQRDYAQTAQICGKA 429
E ++ F SH+++ P+ I LL L +++
Sbjct: 515 RELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSL 574
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
+ LI+++L +K+ + L+ +++ ++D VL S++ + G E+ + +P
Sbjct: 575 MQQLIDDLLTYSKLGLTEAPLQPT--DVQKVVDKVLLELSQRIADTGAEIRI---APLPV 629
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
V D + Q+ NL+ N++KF + +++ +
Sbjct: 630 -VAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQ 666
|
Length = 750 |
| >gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-08
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA-QTAQICGKALIALINEVLD 439
A+ F A VSHE+RTP+ + G L ++ D L R+ A T + + + L+ ++L
Sbjct: 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLT 262
Query: 440 RAKIEAR-KLELEAVL---FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
+KIEA ++L + LR + + +L S+ F D + V G+
Sbjct: 263 LSKIEAAPTIDLNEKVDVPMMLRVLEREAQTL-SQGKHT-----ITFEVDNSLK-VFGNE 315
Query: 496 GRFRQIITNLVGNSVKFTERG-HIFV 520
+ R I+NLV N+V T G HI V
Sbjct: 316 DQLRSAISNLVYNAVNHTPEGTHITV 341
|
Length = 430 |
| >gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 7e-08
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
+ D+G G+ Q+++F + Q +S R G+G+GL I K L++ M+G +S S P +
Sbjct: 869 IMDSGSGLSQEEQQQLFKRYSQ--TSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGI 926
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
G+TF+ T ++ + K + LP + L ++ D+ P + + LN LG
Sbjct: 927 GTTFTITIPVEISQQVATVEAKAEQPITLP---EKLSILIADDHPTNRLLLKRQLNLLG 982
|
Length = 1197 |
| >gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+L+VDD N L+ G V A + + AL LQ D +D++MPEMDG
Sbjct: 16 TVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGA 74
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E +++ M +P++ +TA L+ G D Y
Sbjct: 75 EVLNKLKAMS-------------------PSTRRIPVILLTAYADSEDRQRALEAGADDY 115
Query: 981 VSKPFEEENL 990
+SKP + L
Sbjct: 116 LSKPISPKEL 125
|
Length = 360 |
| >gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVVDD+ + + L+ +G V A S + AL++++ FD D++M EMDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIA 66
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
+ I+ + +P+L MTA T E LK G Y+
Sbjct: 67 TLKEIKALNPA----------------------IPVLIMTAYSSVETAVEALKTGALDYL 104
Query: 982 SKPFEEENLYRELAK 996
KP + +NL L K
Sbjct: 105 IKPLDFDNLQATLEK 119
|
Length = 441 |
| >gnl|CDD|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 33/130 (25%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL--QSPHCFDACFMDIQMPEMDG 919
+ VVDD+ R V AL + G V +A + L L P D D++MP DG
Sbjct: 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQP---DLLITDVRMPGEDG 57
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+ +I++ + LP++ MTA H+ D + G
Sbjct: 58 LDLLPQIKKRHPQ----------------------LPVIVMTA---HSDLDTAVAAYQRG 92
Query: 980 ---YVSKPFE 986
Y+ KPF+
Sbjct: 93 AFEYLPKPFD 102
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]. Length = 463 |
| >gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDD N + L TV A+S A+ + D +D+ MP MDGF
Sbjct: 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQP-DIILLDVMMPGMDGF 62
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD--ECLKCGMD 978
E RR+ K++ H+P++ +TA + D L+ G D
Sbjct: 63 EVCRRL-----KSDPATT---------------HIPVVMVTA--LDDPEDRVRGLEAGAD 100
Query: 979 GYVSKP 984
+++KP
Sbjct: 101 DFLTKP 106
|
Length = 457 |
| >gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDT-----DLSSTQRDYAQTAQICGKA------ 429
K + LA ++H++RTP L +L L+T T+ A Q+ +A
Sbjct: 150 FKDRVLAMLAHDLRTP----LTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEE 205
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
+ LI ++L+ + L +L ++ +V+ ++ K +E+ + +P
Sbjct: 206 IERLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS 265
Query: 490 FVLGDPGRFRQIITNLVGNSVKFT-ERGHIFVKV 522
V D R RQ++ NL+ N++K+T E G I + +
Sbjct: 266 -VYADQERIRQVLLNLLDNAIKYTPEGGTITLSM 298
|
Length = 380 |
| >gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLD-------TDLSSTQRDYAQTAQICGKALIALINEV 437
F+A +SHE+RTP+ + G L + D ++S Q + L L++++
Sbjct: 243 FMADISHELRTPLAVLRGELEAIQDGVRKFTPESVASLQAEVG--------TLTKLVDDL 294
Query: 438 -----LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
D + RK ++ V +L+ F E+ ++G+ L + + D F
Sbjct: 295 HQLSLSDEGALAYRKTPVDLV-----PLLEVAGGAFRERFASRGLTLQLSLPDSATVF-- 347
Query: 493 GDPGRFRQIITNLVGNSVKFTERG 516
GDP R Q+ NL+ NS+++T+ G
Sbjct: 348 GDPDRLMQLFNNLLENSLRYTDSG 371
|
Length = 466 |
| >gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
VED G GIP + +F PF + D ++R GTG+GL+I K +V+ G++ +
Sbjct: 364 FQVEDDGPGIPPEQLKHLFQPFTRGD--SARGSSGTGLGLAIVKRIVDQHNGKVELGNSE 421
Query: 666 QVG 668
+ G
Sbjct: 422 EGG 424
|
Length = 435 |
| >gnl|CDD|182755 PRK10816, PRK10816, DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVV+DN + R L+ G V+ A AK A D + H D +D+ +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEA-DYYLNEHLPDIAIVDLGLPDEDGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
RR R +++ LPIL +TA E L G D Y
Sbjct: 61 SLIRRWRS----------------------NDVSLPILVLTARESWQDKVEVLSAGADDY 98
Query: 981 VSKPFEEE 988
V+KPF E
Sbjct: 99 VTKPFHIE 106
|
Length = 223 |
| >gnl|CDD|225818 COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 861 KILVVDDNGVNRMVAAGALK--KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+L+VDD + R L V A + + AL LQ D F+DI MP+++
Sbjct: 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDIN 61
Query: 919 GFEATRRIRQMESKA 933
G E RIR+ + +
Sbjct: 62 GIELAARIRKGDPRP 76
|
Length = 244 |
| >gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
L + V+D G G+P +E++F PF + D + R GGTG+GL+I
Sbjct: 383 GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAI 427
|
Length = 461 |
| >gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ V DTG GI + +F PF T+R GGTG+GL+ +V G I S
Sbjct: 610 LRVSDTGAGIDEAVLPHIFEPFF-----TTRA-GGTGLGLATVHGIVSAHAGYIDVQSTV 663
Query: 666 QVGSTF 671
G+ F
Sbjct: 664 GRGTRF 669
|
Length = 828 |
| >gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ED G GIP Q+ +F P + S GGTG+GLSI++ L++ G+I F S P
Sbjct: 285 IEDNGPGIPPHLQDTLFYPMV------SGREGGTGLGLSIARNLIDQHSGKIEFTSWP 336
|
Length = 348 |
| >gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ--TAQICGKA--LIALINEVLDRAKI 443
T++HE+++P+ I G A LL D R T I ++ L LI+ +L+ A++
Sbjct: 262 TLTHELKSPLAAIRGA-AELLQEDPPPEDR---ARFTGNILTQSARLQQLIDRLLELARL 317
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
E R+ L A+L++++ ++ KGI L + D VLGDP RQ +
Sbjct: 318 EQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPDDAR---VLGDPFLLRQALG 374
Query: 504 NLVGNSVKFTERG 516
NL+ N++ F+ G
Sbjct: 375 NLLDNAIDFSPEG 387
|
Length = 475 |
| >gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLD---TDLSSTQRDYAQTAQICGKALIA 432
E + + +F+A VSHE+RTP+ + L L + D R T + +I
Sbjct: 219 EKVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETER-MIR 277
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
L+N++L ++++ + +L N A L+++++ F + + I V K +V
Sbjct: 278 LVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVE 337
Query: 493 GDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAER-TMVKTDAKDETL 539
DP + Q++ N++ N++K++ + G I V + +R T V+ D+ L
Sbjct: 338 IDPDKMTQVLDNIISNALKYSPDGGRI--TVSVKQRETWVEISISDQGL 384
|
Length = 459 |
| >gnl|CDD|182612 PRK10643, PRK10643, DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL+V+D+ + AL+ G +CA++A+ A L+S H + +D+ +P+ DG
Sbjct: 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH-YSLVVLDLGLPDEDGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-DVIHATFDECLKCGMDG 979
RR RQ ++ LP+L +TA D + L G D
Sbjct: 61 HLLRRWRQ------KKYT----------------LPVLILTARDTLEDRVAG-LDVGADD 97
Query: 980 YVSKPFEEENL 990
Y+ KPF E L
Sbjct: 98 YLVKPFALEEL 108
|
Length = 222 |
| >gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
KILVVDD+ R + L + G V AA+A+ +D+L + F +D+ +P
Sbjct: 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRLLTRESFHLMVLDLMLPGE 62
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG RR+R + M+ TAK +E+ D I L+ G
Sbjct: 63 DGLSICRRLRSQNNPTPIIML--------TAKGEEV---------DRIVG-----LEIGA 100
Query: 978 DGYVSKPFEEENLYREL 994
D Y+ KPF REL
Sbjct: 101 DDYLPKPFNP----REL 113
|
Length = 239 |
| >gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP-EMDGF 920
IL+VDD +A L+ FG A++ + AL+ L S D F D+ MP M+G
Sbjct: 418 ILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGV 477
Query: 921 EATRRIRQMESK 932
R R+ + K
Sbjct: 478 MLAREARRRQPK 489
|
Length = 540 |
| >gnl|CDD|214376 CHL00148, orf27, Ycf27; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 34/131 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+KILVVDD R + L G V A+ + AL KL D +D+ MP++DG
Sbjct: 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEAL-KLFRKEQPDLVILDVMMPKLDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ + IR+ E +PI+ +TA D I L+
Sbjct: 66 YGVCQEIRK-----------------------ESDVPIIMLTALGDVSDRITG-----LE 97
Query: 975 CGMDGYVSKPF 985
G D YV KPF
Sbjct: 98 LGADDYVVKPF 108
|
Length = 240 |
| >gnl|CDD|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 21/127 (16%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++ILVV+D R + A L+K G V A AL + D +D +P
Sbjct: 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTS 60
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G E RR+R+ +PI+ +TA L+ G D
Sbjct: 61 GIELCRRLRRRPETRA--------------------IPIIMLTARGEEEDRVRGLETGAD 100
Query: 979 GYVSKPF 985
Y++KPF
Sbjct: 101 DYITKPF 107
|
PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well [Regulatory functions, DNA interactions, Signal transduction, Two-component systems]. Length = 226 |
| >gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VED G GI R+ F + D + SR GG+G+GL+I K + ++ S
Sbjct: 354 VEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGK 413
Query: 668 GSTFSFT 674
G+ FSF
Sbjct: 414 GTRFSFV 420
|
Length = 430 |
| >gnl|CDD|236838 PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
IL+V+D AL+ G TVE ALDKL+ D +D+ +P++ GF
Sbjct: 5 TILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGF 63
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--LKCGMD 978
E R++ LP++ +TA D L+ G D
Sbjct: 64 ELCRQLLAFHPA----------------------LPVIFLTAR--SDEVDRLVGLEIGAD 99
Query: 979 GYVSKPFEEENLYRELA 995
YV+KPF RE+A
Sbjct: 100 DYVAKPFSP----REVA 112
|
Length = 228 |
| >gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V V + G GIP R+F F + D + S GTG+GL+I + ++E G+ S P
Sbjct: 388 VSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRAS-AESP 446
Query: 666 QVGSTFSFT 674
+ F
Sbjct: 447 DGKTRFILR 455
|
Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Length = 457 |
| >gnl|CDD|227095 COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 40/140 (28%)
Query: 861 KILVVDDNGVNRMVAAGALKKF------GA-TVECAASAKAALDKLQSPHCFDACFMDIQ 913
K+L+VDD ++ G LK G V AA+ K AL+ +Q D DI
Sbjct: 3 KVLIVDDE---PLIREG-LKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDIN 57
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD--- 970
MP MDG + + I++ +++G + F+
Sbjct: 58 MPGMDGLDLIKAIKEQSPDTEFIILSG-------------------------YDEFEYAK 92
Query: 971 ECLKCGMDGYVSKPFEEENL 990
+ +K G+ Y+ KP ++ L
Sbjct: 93 KAMKLGVKDYLLKPVDKAEL 112
|
Length = 475 |
| >gnl|CDD|225111 COG2201, CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++LVVDD+ + R V + L V A + + A+DK++ D +D++MP MD
Sbjct: 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMD 61
Query: 919 GFEATRRI 926
G EA R+I
Sbjct: 62 GLEALRKI 69
|
Length = 350 |
| >gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 28/148 (18%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L G ++L+++DN + + + A L GA V +A AL+ LQ+ F A +D +P+
Sbjct: 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPD 738
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE---CL 973
DG R Q+ S L ++ +A VI T + L
Sbjct: 739 YDGITLAR-----------QLAQQYPS-----------LVLIGFSAHVIDETLRQRTSSL 776
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSK 1001
G+ + KP E L + LA + + +
Sbjct: 777 FRGI---IPKPVPREVLGQLLAHYLQLQ 801
|
Length = 914 |
| >gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 878 ALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
AL + G V+C AA LQS + +DI MP MDG E +R+R
Sbjct: 19 ALVQNGFAVDCVFDGLAADHLLQSEM-YALAVLDINMPGMDGLEVLQRLR---------- 67
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
KR + LP+L +TA A + L G D Y+ KPFE E L
Sbjct: 68 -----------KRGQ-TLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEEL 108
|
Length = 221 |
| >gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E L + V D G GIP ++ +F F + + ++ G G+GL+I + +VE+ G I
Sbjct: 807 EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKESA--IPGVGLGLAICRAIVEVHGGTI 864
Query: 660 SFVSRPQVGSTFSFT 674
+RP+ G+ F T
Sbjct: 865 WAENRPEGGACFRVT 879
|
Length = 895 |
| >gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 357 HIVKVEDDFHKMQ-ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
+ E K Q EL A+ A V ++ + +++HEI P+N M A L L+
Sbjct: 427 ERQEAEAHLKKTQGELIQAAKLAVVGQT--MTSLAHEINQPLN---AMSAYLFSARLALE 481
Query: 416 QRDYAQTAQICGKA--LIALINEVLDRAKIEARKLELEAVLF--NLRAILDDVLSLFSEK 471
+ AQ A K L + ++++ + ARK + L L ++++ L K
Sbjct: 482 EAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESLQPVRLNSVVEQAWELLQTK 541
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNS 509
+ + I+L D V+GD Q++ NL+ N+
Sbjct: 542 HKRRQIKLINPTDDL---MVMGDAVSIEQVLVNLIVNA 576
|
Length = 673 |
| >gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
G + L + V D G G+P Q+ +F P + + R GGTG+GL++++ L++
Sbjct: 281 GTRYRLALPLEVIDNGPGVPPDLQDHLFYPMV-----SGRE-GGTGLGLALAQNLIDQHG 334
Query: 657 GQISFVSRP 665
G+I F S P
Sbjct: 335 GKIEFDSWP 343
|
Length = 363 |
| >gnl|CDD|182711 PRK10766, PRK10766, DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 28/136 (20%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
ILVV+D V R G ++ G TV AAS + +Q+ H D +DI +P D
Sbjct: 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH-VDLILLDINLPGED 60
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G TR +R + G V G R + + D I L+ G D
Sbjct: 61 GLMLTRELR-------SRSTVGIILVTG---RTD--------SIDRIVG-----LEMGAD 97
Query: 979 GYVSKPFEEENLYREL 994
YV+KP E REL
Sbjct: 98 DYVTKPLE----LREL 109
|
Length = 221 |
| >gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYG-GTGIGLSISKCLVELMRGQISFVSRPQ 666
V D G GI A +F PF T++ G G G+GL+IS+ + + G + + P+
Sbjct: 536 VRDNGPGIAPEALPHLFEPFF-----TTKPVGKGLGLGLAISQNIARDLGGSLEVANHPE 590
Query: 667 VGSTFS 672
G++F+
Sbjct: 591 GGASFT 596
|
Length = 603 |
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 493 GDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAE 526
GDP R RQ+++NL+ N++K+T E G I V +
Sbjct: 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG 35
|
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. Length = 111 |
| >gnl|CDD|182842 PRK10923, glnG, nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 29/129 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ VVDD+ R V AL G T + L+ L S D DI+MP MDG
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGL 63
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG- 979
++I+Q LP++ MTA H+ D + G
Sbjct: 64 ALLKQIKQRHPM----------------------LPVIIMTA---HSDLDAAVSAYQQGA 98
Query: 980 --YVSKPFE 986
Y+ KPF+
Sbjct: 99 FDYLPKPFD 107
|
Length = 469 |
| >gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA---LIALINE 436
VA A V+HEIR P++ I G LA + + Q AQ+ K L +++E
Sbjct: 235 VALGHLAAGVAHEIRNPLSSIKG-LAKYFAERAPAGGEAH-QLAQVMAKEADRLNRVVSE 292
Query: 437 VLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPG 496
+L+ K L L+AV +L +++ L L S+ + ++ I+L +D +PE DP
Sbjct: 293 LLELVK--PTHLALQAV--DLNDLINHSLQLVSQDANSREIQLRFTANDTLPEIQA-DPD 347
Query: 497 RFRQIITNLVGNSVKFTERG 516
R Q++ NL N+++ +
Sbjct: 348 RLTQVLLNLYLNAIQAIGQH 367
|
Length = 457 |
| >gnl|CDD|234828 PRK00742, PRK00742, chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-04
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASA---KAALDKLQS--PHCFDACFMDIQMP 915
++LVVDD+ R + + L +E +A A +K++ P D +D++MP
Sbjct: 5 RVLVVDDSAFMRRLISEILNS-DPDIEVVGTAPDGLEAREKIKKLNP---DVITLDVEMP 60
Query: 916 EMDGFEATRRI 926
MDG +A +I
Sbjct: 61 VMDGLDALEKI 71
|
Length = 354 |
| >gnl|CDD|181815 PRK09390, fixJ, response regulator FixJ; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 864 VVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM-DIQMPEMDGFEA 922
VVDD+ R A L G V SA+A LD L P C + D++MP +DG E
Sbjct: 8 VVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDAL--PGLRFGCVVTDVRMPGIDGIEL 65
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT--ADVIHATFDECLKCGMDGY 980
RR++ S LP++ MT DV A E +K G +
Sbjct: 66 LRRLKARGSP----------------------LPVIVMTGHGDVPLAV--EAMKLGAVDF 101
Query: 981 VSKPFEEENL 990
+ KPFE+E L
Sbjct: 102 IEKPFEDERL 111
|
Length = 202 |
| >gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGG---TGIGLSISKCLVELMRGQISFV 662
+ VED G GIP A R+F F S R G TG+GL+ + + L G+++
Sbjct: 403 LSVEDQGPGIPDYALPRIFERFY----SLPRPANGRKSTGLGLAFVREVARLHGGEVTLR 458
Query: 663 SRPQVG 668
+RP+ G
Sbjct: 459 NRPEGG 464
|
Length = 475 |
| >gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 30/153 (19%)
Query: 372 KVRAEAADVAK----SQFLATVSHEIRTPMNGI---LGMLALLLDTDLSSTQRDYAQTAQ 424
+ + E K Q A ++HE+ P+ I LLL+ R + A
Sbjct: 370 RAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLE-------RGRTEEA- 421
Query: 425 ICGKALIALINEVLDR-AKIE------ARK--LELEAVLFNLRAILDDVLSLFSEKSRNK 475
+ + I+ + +R A I ARK V LR ++ L L + R
Sbjct: 422 ---RENLERISALTERMAAITAHLKSFARKSRDAAGPVS--LREAIEGALELLRGRLRAA 476
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
G+EL P +V+ + R Q++ NL+ N
Sbjct: 477 GVEL-ELDLPDAPLWVMANEIRLEQVLVNLLQN 508
|
Length = 603 |
| >gnl|CDD|237135 PRK12555, PRK12555, chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVE------CAASAKAALDKL--QSPHCFDACFMDI 912
+I +V+D+ +A AL++ A A A+++ Q P D MD+
Sbjct: 2 RIGIVNDS----PLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPP---DVILMDL 54
Query: 913 QMPEMDGFEATRRI 926
+MP MDG EATRRI
Sbjct: 55 EMPRMDGVEATRRI 68
|
Length = 337 |
| >gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D + + VE+ G I R+F F + D S R G+GIGL+I K +V +G ++
Sbjct: 405 DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVA 464
Query: 661 FVSRPQVGSTFSFT 674
S G+ F +
Sbjct: 465 VTSDA-RGTRFVIS 477
|
Length = 482 |
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 493 GDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAE 526
GD R RQ+++NL+ N++K G I V +
Sbjct: 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDG 35
|
This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 111 |
| >gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
D TL + D+ G+ +++F F + + S +R GG+G+GL+I +VE
Sbjct: 378 AEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHN 437
Query: 657 GQIS 660
G+I
Sbjct: 438 GRII 441
|
Length = 466 |
| >gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V D+G GI E +F P+ + GTG+GL++ +VE G I S+
Sbjct: 385 VTDSGKGIAADQLEAIFTPYFTTKAE------GTGLGLAVVHNIVEQHGGTIQVASQEGK 438
Query: 668 GSTF 671
G+TF
Sbjct: 439 GATF 442
|
Length = 457 |
| >gnl|CDD|236839 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V D G GI + +F + S+ G+GL + K VE + G I+ S
Sbjct: 468 LHCEVSDDGPGIAPDEIDAIFD---KGYSTKGS---NRGVGLYLVKQSVENLGGSIAVES 521
Query: 664 RPQVGSTFS 672
P VG+ F
Sbjct: 522 EPGVGTQFF 530
|
Length = 542 |
| >gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTG GIP ++++F + S+ ++ GG GIGL + K LVE + G I S
Sbjct: 467 VADTGPGIPPEVRDKIFE---KGVST--KNTGGRGIGLYLVKQLVERLGGSIEVESEKGQ 521
Query: 668 GSTFS 672
G+ FS
Sbjct: 522 GTRFS 526
|
Length = 537 |
| >gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 371 LKVRAEAADVA------KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA- 423
L E A +A ++ LA +SH++RTP+ + G A +L DL+S +A+ A
Sbjct: 647 LTASEEQARLASEREQLRNALLAALSHDLRTPLTVLFGQ-AEILTLDLASEGSPHARQAS 705
Query: 424 QICGKAL--IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
+I + L L+N +LD A+I++ L L ++ L + I L+
Sbjct: 706 EIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHPINLS- 764
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
+ + + + D F +++ NL+ N+VK+
Sbjct: 765 -LPEPLT-LIHVDGPLFERVLINLLENAVKYA 794
|
Length = 895 |
| >gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 32/142 (22%), Positives = 65/142 (45%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
A+ FL + E++ P+ + + A L T Q+ L+ L++ +
Sbjct: 449 ARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLL 508
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+E + + E LF+L+ ++D+VL + KG++L + K + +GD R+
Sbjct: 509 NMLETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRK 568
Query: 501 IITNLVGNSVKFTERGHIFVKV 522
I+ L+ ++ T G I ++V
Sbjct: 569 ILLLLLNYAITTTAYGKITLEV 590
|
Length = 894 |
| >gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 21/105 (20%)
Query: 574 FKHLIDAEGFQSNASIINMMASNGGS----------EDVTLMVCVEDTGIGIPLSAQERV 623
FK L+D NA I M G ++V + D+G GIP + +V
Sbjct: 392 FKALVD------NA--IEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKV 443
Query: 624 FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVG 668
F PF + +H G+GLS+++ +V G I G
Sbjct: 444 FEPFFTTKGGSRKH---IGMGLSVAQEIVADHGGIIDLDDDYSEG 485
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, Protein interactions]. Length = 494 |
| >gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 377 AADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS-TQRDYAQTAQICGKALIALIN 435
A A + ++HEI+ P+ GI G A LL+ L R+ Q I +A +
Sbjct: 127 AQQRAVKGLVRGLAHEIKNPLGGIRGA-AQLLERALPDEALRELTQL--IIEEA--DRLR 181
Query: 436 EVLDRAKI--EARKLELEAVLFNLRAILDDVLSLFS-EKSRNKGIELAVFVSDKVPEF-- 490
++DR ++ R + V N+ +L+ V +L E + N + D P
Sbjct: 182 NLVDRLEVLGPQRPGDRVPV--NIHEVLERVRALVEAEFADN-----VRLIRDYDPSLPE 234
Query: 491 VLGDPGRFRQIITNLVGN 508
VLGD + Q+ NLV N
Sbjct: 235 VLGDRDQLIQVFLNLVRN 252
|
Length = 363 |
| >gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D L + VED G GIP S +E +F +AD T R G G+GLS+++ + E G+IS
Sbjct: 406 DEHLHIVVEDDGPGIPESKRELIFDRGQRAD--TLR--PGQGLGLSVAREITEQYEGKIS 461
|
Length = 485 |
| >gnl|CDD|182387 PRK10336, PRK10336, DNA-binding transcriptional regulator QseB; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+ DD + + G L K G +V+ + + L S +DA +D+ +P MDG +
Sbjct: 4 LLIEDDMLIGDGIKTG-LSKMGFSVDWFTQGRQGKEALYSAP-YDAVILDLTLPGMDGRD 61
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
R R+ +R+ P+L +TA A E L+ G D Y+
Sbjct: 62 ILREWRE------------------KGQRE----PVLILTARDALAERVEGLRLGADDYL 99
Query: 982 SKPF 985
KPF
Sbjct: 100 CKPF 103
|
Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 100.0 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 100.0 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 100.0 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 100.0 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 100.0 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 100.0 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 100.0 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 100.0 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 100.0 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 100.0 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 100.0 | |
| PRK13557 | 540 | histidine kinase; Provisional | 100.0 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 100.0 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 100.0 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 100.0 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 100.0 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 100.0 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 100.0 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 100.0 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 100.0 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 99.97 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 99.97 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 99.97 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 99.97 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 99.97 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 99.97 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 99.97 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 99.97 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 99.97 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 99.97 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 99.97 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 99.96 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 99.96 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 99.96 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 99.95 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 99.94 | |
| PF03924 | 193 | CHASE: CHASE domain; InterPro: IPR006189 The CHASE | 99.94 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.94 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 99.93 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.9 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 99.89 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 99.89 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 99.88 | |
| COG0745 | 229 | OmpR Response regulators consisting of a CheY-like | 99.84 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 99.84 | |
| COG3614 | 348 | Predicted periplasmic ligand-binding sensor domain | 99.82 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.82 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 99.81 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 99.78 | |
| PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.75 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 99.73 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.72 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 99.72 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 99.71 | |
| COG3437 | 360 | Response regulator containing a CheY-like receiver | 99.7 | |
| COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction | 99.7 | |
| COG4753 | 475 | Response regulator containing CheY-like receiver d | 99.69 | |
| COG3706 | 435 | PleD Response regulator containing a CheY-like rec | 99.69 | |
| COG4566 | 202 | TtrR Response regulator [Signal transduction mecha | 99.66 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 99.65 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 99.62 | |
| COG2197 | 211 | CitB Response regulator containing a CheY-like rec | 99.62 | |
| PLN03029 | 222 | type-a response regulator protein; Provisional | 99.6 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 99.56 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.55 | |
| PRK10529 | 225 | DNA-binding transcriptional activator KdpE; Provis | 99.55 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 99.54 | |
| PRK11173 | 237 | two-component response regulator; Provisional | 99.54 | |
| PRK10816 | 223 | DNA-binding transcriptional regulator PhoP; Provis | 99.53 | |
| PRK09836 | 227 | DNA-binding transcriptional activator CusR; Provis | 99.52 | |
| PRK10766 | 221 | DNA-binding transcriptional regulator TorR; Provis | 99.51 | |
| PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 99.5 | |
| PRK10161 | 229 | transcriptional regulator PhoB; Provisional | 99.5 | |
| PRK10701 | 240 | DNA-binding transcriptional regulator RstA; Provis | 99.5 | |
| PRK13856 | 241 | two-component response regulator VirG; Provisional | 99.5 | |
| PRK10643 | 222 | DNA-binding transcriptional regulator BasR; Provis | 99.49 | |
| PRK10430 | 239 | DNA-binding transcriptional activator DcuR; Provis | 99.49 | |
| TIGR02154 | 226 | PhoB phosphate regulon transcriptional regulatory | 99.48 | |
| PRK10955 | 232 | DNA-binding transcriptional regulator CpxR; Provis | 99.48 | |
| TIGR02875 | 262 | spore_0_A sporulation transcription factor Spo0A. | 99.47 | |
| TIGR03787 | 227 | marine_sort_RR proteobacterial dedicated sortase s | 99.47 | |
| PRK10336 | 219 | DNA-binding transcriptional regulator QseB; Provis | 99.47 | |
| PRK11517 | 223 | transcriptional regulatory protein YedW; Provision | 99.46 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 99.44 | |
| PRK11083 | 228 | DNA-binding response regulator CreB; Provisional | 99.43 | |
| TIGR01387 | 218 | cztR_silR_copR heavy metal response regulator. Mem | 99.43 | |
| PRK10840 | 216 | transcriptional regulator RcsB; Provisional | 99.43 | |
| PRK14084 | 246 | two-component response regulator; Provisional | 99.42 | |
| CHL00148 | 240 | orf27 Ycf27; Reviewed | 99.42 | |
| PRK09958 | 204 | DNA-binding transcriptional activator EvgA; Provis | 99.41 | |
| COG4567 | 182 | Response regulator consisting of a CheY-like recei | 99.4 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.4 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.4 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.39 | |
| PRK10360 | 196 | DNA-binding transcriptional activator UhpA; Provis | 99.39 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.38 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.38 | |
| PRK11697 | 238 | putative two-component response-regulatory protein | 99.37 | |
| PRK09935 | 210 | transcriptional regulator FimZ; Provisional | 99.37 | |
| PRK09483 | 217 | response regulator; Provisional | 99.37 | |
| PRK12555 | 337 | chemotaxis-specific methylesterase; Provisional | 99.36 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 99.35 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.35 | |
| PRK10710 | 240 | DNA-binding transcriptional regulator BaeR; Provis | 99.35 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.34 | |
| PF00512 | 68 | HisKA: His Kinase A (phospho-acceptor) domain; Int | 99.34 | |
| PRK15479 | 221 | transcriptional regulatory protein TctD; Provision | 99.32 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.3 | |
| PRK09390 | 202 | fixJ response regulator FixJ; Provisional | 99.28 | |
| PRK00742 | 354 | chemotaxis-specific methylesterase; Provisional | 99.27 | |
| PRK10100 | 216 | DNA-binding transcriptional regulator CsgD; Provis | 99.27 | |
| PRK11475 | 207 | DNA-binding transcriptional activator BglJ; Provis | 99.26 | |
| PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.26 | |
| COG2201 | 350 | CheB Chemotaxis response regulator containing a Ch | 99.25 | |
| PRK13435 | 145 | response regulator; Provisional | 99.24 | |
| PRK10610 | 129 | chemotaxis regulatory protein CheY; Provisional | 99.23 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.23 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 99.22 | |
| COG3707 | 194 | AmiR Response regulator with putative antiterminat | 99.21 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 99.2 | |
| PRK15369 | 211 | two component system sensor kinase SsrB; Provision | 99.19 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 99.19 | |
| PRK10651 | 216 | transcriptional regulator NarL; Provisional | 99.19 | |
| PRK10403 | 215 | transcriptional regulator NarP; Provisional | 99.17 | |
| PRK15411 | 207 | rcsA colanic acid capsular biosynthesis activation | 99.12 | |
| PRK09191 | 261 | two-component response regulator; Provisional | 99.1 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 99.1 | |
| COG3452 | 297 | Predicted periplasmic ligand-binding sensor domain | 99.07 | |
| PRK10693 | 303 | response regulator of RpoS; Provisional | 99.05 | |
| cd00156 | 113 | REC Signal receiver domain; originally thought to | 99.0 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 98.96 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 98.96 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 98.95 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 98.89 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 98.87 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 98.79 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.78 | |
| COG3279 | 244 | LytT Response regulator of the LytR/AlgR family [T | 98.7 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 98.67 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 98.56 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 98.55 | |
| smart00388 | 66 | HisKA His Kinase A (phosphoacceptor) domain. Dimer | 98.53 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 98.4 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 98.34 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 98.32 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 98.28 | |
| COG3706 | 435 | PleD Response regulator containing a CheY-like rec | 98.13 | |
| cd00082 | 65 | HisKA Histidine Kinase A (dimerization/phosphoacce | 98.07 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 97.96 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 97.71 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 97.59 | |
| smart00448 | 55 | REC cheY-homologous receiver domain. CheY regulate | 96.91 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 96.83 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 96.64 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 96.62 | |
| COG0745 | 229 | OmpR Response regulators consisting of a CheY-like | 96.56 | |
| PF06490 | 109 | FleQ: Flagellar regulatory protein FleQ; InterPro: | 96.48 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.76 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 95.49 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 95.45 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 95.43 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 95.31 | |
| COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction | 95.09 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 94.78 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 94.68 | |
| PLN03029 | 222 | type-a response regulator protein; Provisional | 94.38 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 94.19 | |
| PRK00742 | 354 | chemotaxis-specific methylesterase; Provisional | 94.12 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 94.05 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 93.58 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 93.51 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 93.08 | |
| TIGR02154 | 226 | PhoB phosphate regulon transcriptional regulatory | 92.83 | |
| PRK10161 | 229 | transcriptional regulator PhoB; Provisional | 92.8 | |
| PF03709 | 115 | OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal | 92.78 | |
| PRK12555 | 337 | chemotaxis-specific methylesterase; Provisional | 92.54 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 92.49 | |
| PRK10643 | 222 | DNA-binding transcriptional regulator BasR; Provis | 92.18 | |
| PRK09836 | 227 | DNA-binding transcriptional activator CusR; Provis | 92.14 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 92.12 | |
| PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 92.08 | |
| PRK11173 | 237 | two-component response regulator; Provisional | 92.08 | |
| PRK10336 | 219 | DNA-binding transcriptional regulator QseB; Provis | 91.96 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 91.95 | |
| TIGR03787 | 227 | marine_sort_RR proteobacterial dedicated sortase s | 91.79 | |
| PRK10816 | 223 | DNA-binding transcriptional regulator PhoP; Provis | 91.79 | |
| PRK10840 | 216 | transcriptional regulator RcsB; Provisional | 91.69 | |
| PRK10955 | 232 | DNA-binding transcriptional regulator CpxR; Provis | 91.49 | |
| COG4567 | 182 | Response regulator consisting of a CheY-like recei | 91.27 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 91.01 | |
| PRK10529 | 225 | DNA-binding transcriptional activator KdpE; Provis | 90.97 | |
| PRK13856 | 241 | two-component response regulator VirG; Provisional | 90.9 | |
| PRK13435 | 145 | response regulator; Provisional | 90.88 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 90.87 | |
| PRK10766 | 221 | DNA-binding transcriptional regulator TorR; Provis | 90.81 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 90.77 | |
| PRK11517 | 223 | transcriptional regulatory protein YedW; Provision | 90.63 | |
| CHL00148 | 240 | orf27 Ycf27; Reviewed | 90.44 | |
| PRK10701 | 240 | DNA-binding transcriptional regulator RstA; Provis | 90.39 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.37 | |
| COG3437 | 360 | Response regulator containing a CheY-like receiver | 90.25 | |
| PRK09958 | 204 | DNA-binding transcriptional activator EvgA; Provis | 90.23 | |
| COG5381 | 184 | Uncharacterized protein conserved in bacteria [Fun | 90.15 | |
| TIGR02875 | 262 | spore_0_A sporulation transcription factor Spo0A. | 90.08 | |
| PRK11083 | 228 | DNA-binding response regulator CreB; Provisional | 90.08 | |
| COG4566 | 202 | TtrR Response regulator [Signal transduction mecha | 89.72 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 89.7 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 89.63 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 89.54 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 88.68 | |
| PRK15426 | 570 | putative diguanylate cyclase YedQ; Provisional | 88.3 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 87.83 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 87.79 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 87.62 | |
| PRK11697 | 238 | putative two-component response-regulatory protein | 87.27 | |
| PRK09483 | 217 | response regulator; Provisional | 87.27 | |
| PRK10610 | 129 | chemotaxis regulatory protein CheY; Provisional | 87.26 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 86.88 | |
| PRK15479 | 221 | transcriptional regulatory protein TctD; Provision | 86.54 | |
| TIGR01387 | 218 | cztR_silR_copR heavy metal response regulator. Mem | 86.49 | |
| PRK14084 | 246 | two-component response regulator; Provisional | 86.34 | |
| PRK10710 | 240 | DNA-binding transcriptional regulator BaeR; Provis | 86.06 | |
| COG2197 | 211 | CitB Response regulator containing a CheY-like rec | 86.01 | |
| PRK10430 | 239 | DNA-binding transcriptional activator DcuR; Provis | 86.0 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 85.35 | |
| PRK09191 | 261 | two-component response regulator; Provisional | 85.22 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 85.18 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 84.9 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 84.85 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 84.82 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 84.81 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 84.47 | |
| COG4999 | 140 | Uncharacterized domain of BarA-like signal transdu | 84.44 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 84.3 | |
| PRK10360 | 196 | DNA-binding transcriptional activator UhpA; Provis | 83.65 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 83.14 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 82.31 | |
| COG4753 | 475 | Response regulator containing CheY-like receiver d | 81.34 | |
| PRK13557 | 540 | histidine kinase; Provisional | 81.04 | |
| cd02070 | 201 | corrinoid_protein_B12-BD B12 binding domain of cor | 80.83 | |
| PRK15411 | 207 | rcsA colanic acid capsular biosynthesis activation | 80.62 | |
| PRK09935 | 210 | transcriptional regulator FimZ; Provisional | 80.62 |
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=621.77 Aligned_cols=487 Identities=29% Similarity=0.446 Sum_probs=388.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001846 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447 (1006)
Q Consensus 368 l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~ 447 (1006)
+++++.++++++++|++|++++||||||||++|+|++++|....++++++++++.+..++++|..+|+++||++|++++.
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~ 512 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQ 512 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555667788889999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred ccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeec
Q 001846 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527 (1006)
Q Consensus 448 ~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~ 527 (1006)
+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 513 ~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~-- 590 (924)
T PRK10841 513 LKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD-- 590 (924)
T ss_pred ceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe--
Confidence 999999999999999999999999999999999998888888899999999999999999999999999888776531
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+.|+
T Consensus 591 -------------------------------------------------------------------------~~~l~i~ 597 (924)
T PRK10841 591 -------------------------------------------------------------------------GDYLSFR 597 (924)
T ss_pred -------------------------------------------------------------------------CCEEEEE
Confidence 1247899
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhh
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFED 687 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~ 687 (1006)
|.|||+|||++.++++|+||+|.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+......
T Consensus 598 V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~---- 673 (924)
T PRK10841 598 VRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYP---- 673 (924)
T ss_pred EEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCccccc----
Confidence 9999999999999999999999988777788899999999999999999999999999999999999998643211
Q ss_pred ccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcccc
Q 001846 688 IKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767 (1006)
Q Consensus 688 ~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~ 767 (1006)
.........+.+++++.+++........+++++|+.+...... .....++++.|......
T Consensus 674 -----~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~---------------~~~~~d~~i~d~~~~~~ 733 (924)
T PRK10841 674 -----QKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQ---------------EPTPEDVLITDDPVQKK 733 (924)
T ss_pred -----ccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcccc---------------cCCcCcEEEEcCccccc
Confidence 1122345678889999999999999999999999998765421 11234666665432111
Q ss_pred CCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCC
Q 001846 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847 (1006)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~ 847 (1006)
.... ..+.+.... ....... .....+.+|.....+...+.+...............
T Consensus 734 ~~~~-------------------~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 789 (924)
T PRK10841 734 WQGR-------------------AVITFCRRH--IGIPLEI---APGEWVHSTATPHELPALLARIYRIELESDDSANAL 789 (924)
T ss_pred cchh-------------------hhhhhhhcc--ccChhhc---ccCceeeccCChHHHHHHHHHHhhcccccccccccc
Confidence 0000 000000000 0000000 011244566666666666655543222111111100
Q ss_pred CCCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001846 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIR 927 (1006)
Q Consensus 848 ~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR 927 (1006)
...........+.+|||||||+.++..+..+|++.|+.|.++.||.+|++.+.. +.||+||||++||+|||++++++||
T Consensus 790 ~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-~~~DlVl~D~~mP~mdG~el~~~ir 868 (924)
T PRK10841 790 PSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLTDVNMPNMDGYRLTQRLR 868 (924)
T ss_pred cccccccccCCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 000001112245799999999999999999999999999999999999999976 5699999999999999999999999
Q ss_pred hhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 928 QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 928 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
+.. ..+|||++|++...+...+|+++||++||.||++.++|.+.|.++...
T Consensus 869 ~~~----------------------~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 869 QLG----------------------LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred hcC----------------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 742 258999999999999999999999999999999999999999988654
|
|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=622.36 Aligned_cols=506 Identities=35% Similarity=0.487 Sum_probs=414.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccce
Q 001846 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451 (1006)
Q Consensus 372 k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~ 451 (1006)
+.+++++++.|++|++++||||||||++|+|+++++....+++.+++|++.+..++++|..+||++++++|+++++..++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 44566777889999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccc
Q 001846 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531 (1006)
Q Consensus 452 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 531 (1006)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887764221
Q ss_pred cccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEec
Q 001846 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611 (1006)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 611 (1006)
..+...+.|+|.||
T Consensus 439 ------------------------------------------------------------------~~~~~~~~i~V~D~ 452 (919)
T PRK11107 439 ------------------------------------------------------------------SNTKVQLEVQIRDT 452 (919)
T ss_pred ------------------------------------------------------------------CCCeeEEEEEEEEe
Confidence 01223588999999
Q ss_pred CCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhcccc
Q 001846 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS 691 (1006)
Q Consensus 612 G~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~ 691 (1006)
|+|||++.++++|+||+|.+.++++.++|+||||+|||++++.|||+|+++|.+|+||+|+|++|+.......
T Consensus 453 G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~------- 525 (919)
T PRK11107 453 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI------- 525 (919)
T ss_pred CCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc-------
Confidence 9999999999999999999998888899999999999999999999999999999999999999986543211
Q ss_pred CCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCc
Q 001846 692 KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771 (1006)
Q Consensus 692 ~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~ 771 (1006)
........+.|.+++++|+++..+......|+.+|+.+..+.+..+. ....||++++|.+........
T Consensus 526 ~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~l------------~~~~~d~il~~~~~~~~~~~~ 593 (919)
T PRK11107 526 IDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQL------------PEAHYDILLLGLPVTFREPLT 593 (919)
T ss_pred cccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHHh------------ccCCCCEEEecccCCCCCCHH
Confidence 11122345778999999999999999999999999999999887772 124689999987654322211
Q ss_pred chhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCC
Q 001846 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851 (1006)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 851 (1006)
.......... . ..+.++++...............| .+.++.||+....+...+........... . .
T Consensus 594 ~~~~~~~~~~----~-~~~~~i~~~~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~l~~~~~~~~~~~-----~---~ 659 (919)
T PRK11107 594 MLHERLAKAK----S-MTDFLILALPCHEQVLAEQLKQDG-ADACLSKPLSHTRLLPALLEPCHHKQPPL-----L---P 659 (919)
T ss_pred HHHHHHHhhh----h-cCCcEEEEeCCcchhhHHHHhhCC-CceEECCCCCHHHHHHHHHHhhccccccc-----c---c
Confidence 1111111111 1 123344444444444443444444 45789999999988888765442111100 0 0
Q ss_pred ccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhc
Q 001846 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931 (1006)
Q Consensus 852 ~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~ 931 (1006)
.......+.+|||||||+.++..++.+|+..|+.|.++.+|.+|++.+.. ..||+||||+.||+|||+++++.||+...
T Consensus 660 ~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~lr~~~~ 738 (919)
T PRK11107 660 PTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPH 738 (919)
T ss_pred ccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHhccc
Confidence 00112235689999999999999999999999999999999999999876 56999999999999999999999997421
Q ss_pred hhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
..++|||++|++...+...+|+++||++|+.||++.++|...|.+++...
T Consensus 739 --------------------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 739 --------------------NQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred --------------------CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 23689999999999999999999999999999999999999999997643
|
|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=612.07 Aligned_cols=774 Identities=31% Similarity=0.333 Sum_probs=560.6
Q ss_pred CcceeeEeeecCCCcccccccCCchhhHHHHHHHHhcCCceeeeceeecCCcccceEEEeecccCCCCCCCCHHHHH-Hh
Q 001846 168 DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI-KA 246 (1006)
Q Consensus 168 ~~y~pv~~~~~~~~~~~~~D~~s~~~~r~~i~~Ar~tg~~~lt~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~-~~ 246 (1006)
.+|.|..|..+++.....+|+..+-+++.+...++-+...+++.++........+...++-++..-++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999888999999999999999999999999999998887777777777777776665554444443 33
Q ss_pred hccceecccchhHHHHHHHhhhccCccEEEEEeccCCCCCcccccCCCCCCCcccccccccccccccchhhhhhhhh--c
Q 001846 247 TAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRY--H 324 (1006)
Q Consensus 247 ~~G~v~~~~~v~~l~~~ll~~~~~~~~~~v~v~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 324 (1006)
...+-...|+...+....+.....+......++..........+|+....... ..+.....+..+-+.+...+++ .
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~--~~~~lP~~~~~~~~~~~~~~~~~~~ 161 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALN--LVEVLPLLLLVKNRELELKQKVLHA 161 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccc--cccccchhhccchhhhhhhcccccc
Confidence 33455556666666666555555455555555555555555556655443322 2344455566666666776763 2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhhHHHHHH
Q 001846 325 QKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQ--FLATVSHEIRTPMNGILG 402 (1006)
Q Consensus 325 ~~~~~~w~~~~~~~~~~~i~ll~~~~~~~~~~~~~~~~~~~~~l~~~k~~ae~a~~aKs~--Fla~vSHELRTPLn~I~g 402 (1006)
......+.++...........++.+.......+...++....++.+....++++...+++ |+++++|||||||++ |
T Consensus 162 ~~l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~ 239 (786)
T KOG0519|consen 162 AELDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--G 239 (786)
T ss_pred hhhhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--C
Confidence 233344555555555444444555556666666666667777788888888888888999 999999999999999 8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 001846 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVF 482 (1006)
Q Consensus 403 ~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~ 482 (1006)
+...+.++..+.+++.+....+.++..++.++|+++|.+++++|.+++...+|+++.+++.+++.+.+.+..++..+...
T Consensus 240 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~ 319 (786)
T KOG0519|consen 240 MLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLD 319 (786)
T ss_pred cceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEe
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCcccccCCCCcccccccc
Q 001846 483 VSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGL 562 (1006)
Q Consensus 483 ~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 562 (1006)
.+..+|..+.+|+.+++||+.|+++||||||..|+|++++++.+......+.. ..
T Consensus 320 ~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l----~~--------------------- 374 (786)
T KOG0519|consen 320 LSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVL----LR--------------------- 374 (786)
T ss_pred cCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHH----Hh---------------------
Confidence 99999999999999999999999999999999999999998876543211100 00
Q ss_pred ccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhh-hccccccCCCCCCCCCCCc
Q 001846 563 EAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQER-VFMPFMQADSSTSRHYGGT 641 (1006)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~-iF~pF~q~~~s~s~~~gGt 641 (1006)
++....|..+........................+......+.+.|+|+||+.+.... +|.+|.|++.+.++.++|+
T Consensus 375 --~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt 452 (786)
T KOG0519|consen 375 --AKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGT 452 (786)
T ss_pred --hhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCC
Confidence 0000000000000000000000000000000001112345688999999999999998 9999999999999999999
Q ss_pred cccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHH
Q 001846 642 GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721 (1006)
Q Consensus 642 GLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~ 721 (1006)
|+|++||++++++|+|.+.+.+....|++|+|++++.............. .......+.|..+.+.+.+..+..+.++.
T Consensus 453 ~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 531 (786)
T KOG0519|consen 453 GLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKR-LFQIILDFNGMLALLIDTKLGREQIFQVL 531 (786)
T ss_pred cccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhh-hhhhhhhhcchhhhhhccccCcceeEEEE
Confidence 99999999999999999999999999999999999977655433221111 12233456677777777766666677777
Q ss_pred HHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcch-hHhhhh-cCCCCCcCCCCeEEEEecCC
Q 001846 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF-NAQLLD-WKPNGHVFKLPKLILLATNI 799 (1006)
Q Consensus 722 l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ill~~~~ 799 (1006)
.+.+|+.++...++..+.-...... ..-...+.++.+.+.......- ...... .+........+..+.++...
T Consensus 532 ~~~~~~~vd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
T KOG0519|consen 532 AELLGISVDVSLSLSLAFWFLDLSL-----SDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCP 606 (786)
T ss_pred ecccCccccccccchhhhhhccccc-----ccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccch
Confidence 7778888887765544443221111 1124455666666654432211 111111 11111111234445555555
Q ss_pred ChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCccccccccceEEEecCcHHHHHHHHHHH
Q 001846 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879 (1006)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L 879 (1006)
......+...+...+....+|.....+..++...+................+.....++|++|||||||.+|+++++.+|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l 686 (786)
T KOG0519|consen 607 ENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGML 686 (786)
T ss_pred hhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHH
Confidence 55555555555555556667777777888877766543222222222222233566788999999999999999999999
Q ss_pred hhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEE
Q 001846 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959 (1006)
Q Consensus 880 ~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIa 959 (1006)
+++|++++++.||.||++++++++.||+||||+|||+|||+|++++||+.+ .+++||||
T Consensus 687 ~~~g~~~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvA 745 (786)
T KOG0519|consen 687 KKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVA 745 (786)
T ss_pred HHhCCeeEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEE
Confidence 999999999999999999999778999999999999999999999999853 26999999
Q ss_pred EecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 960 lTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
|||++.+++.++|+++|||+||+|||+.+.|..+|.+++.
T Consensus 746 lTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 746 LTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999875
|
|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=566.32 Aligned_cols=427 Identities=35% Similarity=0.521 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
++.+.+++.++..|++|++++||||||||++|+|++++|.+..++++++++++.+..++++|..+||++|+++|+|++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~ 464 (921)
T PRK15347 385 AEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQM 464 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34455667778889999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeecc
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 528 (1006)
.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|+|.|++...
T Consensus 465 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~--- 541 (921)
T PRK15347 465 TLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH--- 541 (921)
T ss_pred cceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc---
Confidence 99999999999999999999999999999999999888888899999999999999999999999999988877431
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 542 ------------------------------------------------------------------------~~~~~i~V 549 (921)
T PRK15347 542 ------------------------------------------------------------------------EQQLCFTV 549 (921)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12578999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhc
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~ 688 (1006)
+|||+|||++.+++||+||+|.+.. .+|+||||+||++++++|||+|+++|.+|+||+|+|++|+.......
T Consensus 550 ~D~G~Gi~~~~~~~if~~f~~~~~~----~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~---- 621 (921)
T PRK15347 550 EDTGCGIDIQQQQQIFTPFYQADTH----SQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPE---- 621 (921)
T ss_pred EEcCCCCCHHHHHHHhcCcccCCCC----CCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcc----
Confidence 9999999999999999999987643 36999999999999999999999999999999999999986422100
Q ss_pred cccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccC
Q 001846 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768 (1006)
Q Consensus 689 ~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~ 768 (1006)
...+. ..........+..+|..+......... ..
T Consensus 622 ----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-------------- 655 (921)
T PRK15347 622 ----------PLKGE--------LSAPLALHRQLSAWGITCQPGHQNPAL--------------LD-------------- 655 (921)
T ss_pred ----------ccccc--------ccchHHHHHHHHHcCCcccccccchhh--------------cc--------------
Confidence 00000 001112223344444332211000000 00
Q ss_pred CCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCC
Q 001846 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848 (1006)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~ 848 (1006)
+. ...-| ..+...+.+......... ....+
T Consensus 656 ---------------------~~------------------------~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~- 685 (921)
T PRK15347 656 ---------------------PE------------------------LAYLP---GRLYDLLQQIIQGAPNEP-VINLP- 685 (921)
T ss_pred ---------------------hh------------------------hhhcc---hHHHHHHHHHhhcCCCcc-cccCC-
Confidence 00 00000 011111222111110000 00000
Q ss_pred CCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Q 001846 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928 (1006)
Q Consensus 849 ~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~ 928 (1006)
....+.+|||||||+.++..+..+|+..|+.|.+|.+|.+|++.+.. +.||+||||++||+|||++++++||+
T Consensus 686 ------~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlil~D~~mp~~~G~~~~~~ir~ 758 (921)
T PRK15347 686 ------LQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGLETTQLWRD 758 (921)
T ss_pred ------CCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 01234589999999999999999999999999999999999999876 56999999999999999999999997
Q ss_pred hhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 929 ~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+.. ...++|||++|++...+...+|+++||++||.||++.++|..+|.+++.
T Consensus 759 ~~~~------------------~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 759 DPNN------------------LDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred chhh------------------cCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4321 1247899999999999999999999999999999999999999987653
|
|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=552.86 Aligned_cols=376 Identities=35% Similarity=0.546 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001846 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEAR 446 (1006)
Q Consensus 367 ~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g 446 (1006)
+.++++++++.++++|++|+++|||||||||++|.|+++++.++.++++++++++.+..++++|..++|++++++|++++
T Consensus 268 e~k~~e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 347 (779)
T PRK11091 268 ERKRYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERR 347 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCC
Confidence 33444555667777899999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEee
Q 001846 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526 (1006)
Q Consensus 447 ~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~ 526 (1006)
++.++..++|+.++++++...+...+..+++.+.+..++..|..+.+|+.+|+||+.||++||+||++.|.|.|++....
T Consensus 348 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~ 427 (779)
T PRK11091 348 KLQLDNQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE 427 (779)
T ss_pred CcEEEeeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc
Confidence 99999999999999999999999999999999999988888888999999999999999999999999998888775310
Q ss_pred ccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEE
Q 001846 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606 (1006)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 606 (1006)
...+.|
T Consensus 428 --------------------------------------------------------------------------~~~~~i 433 (779)
T PRK11091 428 --------------------------------------------------------------------------GDMLTF 433 (779)
T ss_pred --------------------------------------------------------------------------CCEEEE
Confidence 124789
Q ss_pred EEEecCCCCChhHHhhhccccccC-CCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchh
Q 001846 607 CVEDTGIGIPLSAQERVFMPFMQA-DSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVF 685 (1006)
Q Consensus 607 ~V~DtG~GI~~e~~~~iF~pF~q~-~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~ 685 (1006)
+|.|||+|||++.+++||+|||+. +.+.++..+||||||+|||+||+.|||+|+++|.+|+||+|+|++|+........
T Consensus 434 ~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~ 513 (779)
T PRK11091 434 EVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVE 513 (779)
T ss_pred EEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccc
Confidence 999999999999999999999999 5666666899999999999999999999999999999999999999753211000
Q ss_pred hhccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcc
Q 001846 686 EDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765 (1006)
Q Consensus 686 ~~~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~ 765 (1006)
. .
T Consensus 514 -----------~--------------------------------------------------------~----------- 515 (779)
T PRK11091 514 -----------D--------------------------------------------------------A----------- 515 (779)
T ss_pred -----------c--------------------------------------------------------c-----------
Confidence 0 0
Q ss_pred ccCCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCC
Q 001846 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845 (1006)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~ 845 (1006)
+. .. +
T Consensus 516 ------------------------~~---------------------~~-----~------------------------- 520 (779)
T PRK11091 516 ------------------------FD---------------------ED-----D------------------------- 520 (779)
T ss_pred ------------------------cc---------------------cc-----c-------------------------
Confidence 00 00 0
Q ss_pred CCCCCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHH
Q 001846 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRR 925 (1006)
Q Consensus 846 ~~~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~ 925 (1006)
....+.+|||||||+.++..+..+|+..|+.|.++.+|++|++.+.. +.||+||||++||+|||++++++
T Consensus 521 ---------~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~Dlvl~D~~mp~~~G~e~~~~ 590 (779)
T PRK11091 521 ---------MPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-DEYDLVLLDIQLPDMTGLDIARE 590 (779)
T ss_pred ---------ccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEcCCCCCCCHHHHHHH
Confidence 00123589999999999999999999999999999999999999875 56999999999999999999999
Q ss_pred HHhhhchhhhhhccCCCCcCCCcccCCCC-CcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 926 IRQMESKANEQMMNGGSSVDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 926 IR~~e~~~~~~~~~~~~~~~~~~~~~~~~-~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
||+..+ ..+ +|||++|++...+ ..+|+++||++||.||++.++|...|.+++..
T Consensus 591 ir~~~~--------------------~~~~~~ii~~ta~~~~~-~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 591 LRERYP--------------------REDLPPLVALTANVLKD-KKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHhccc--------------------cCCCCcEEEEECCchHh-HHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 997421 124 4999999987654 67899999999999999999999999999854
|
|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=563.17 Aligned_cols=371 Identities=40% Similarity=0.642 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
+.+.++++++.+|++|++++||||||||++|+|++++|.+..+++.+++|++.|..++++|..+|+++|+++++|++...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~ 531 (968)
T TIGR02956 452 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLS 531 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 34566788889999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...+
T Consensus 532 ~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~--- 608 (968)
T TIGR02956 532 ISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLND--- 608 (968)
T ss_pred eeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcC---
Confidence 99999999999999999999999999999999998888888999999999999999999999999999888775321
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
...+.|+|.
T Consensus 609 -----------------------------------------------------------------------~~~~~i~V~ 617 (968)
T TIGR02956 609 -----------------------------------------------------------------------DSSLLFEVE 617 (968)
T ss_pred -----------------------------------------------------------------------CCeEEEEEE
Confidence 011789999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhcc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~ 689 (1006)
|||+|||++.+++||+||+|.+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+...+....
T Consensus 618 D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~---- 691 (968)
T TIGR02956 618 DTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED---- 691 (968)
T ss_pred eCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc----
Confidence 9999999999999999999998 3455689999999999999999999999999999999999999753210000
Q ss_pred ccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCC
Q 001846 690 QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769 (1006)
Q Consensus 690 ~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~ 769 (1006)
. .
T Consensus 692 -------~--------------------------------------------------------~--------------- 693 (968)
T TIGR02956 692 -------S--------------------------------------------------------A--------------- 693 (968)
T ss_pred -------c--------------------------------------------------------c---------------
Confidence 0 0
Q ss_pred CcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCC
Q 001846 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849 (1006)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 849 (1006)
..+ |
T Consensus 694 ------------------~~~-----------------------------~----------------------------- 697 (968)
T TIGR02956 694 ------------------TLT-----------------------------V----------------------------- 697 (968)
T ss_pred ------------------ccc-----------------------------c-----------------------------
Confidence 000 0
Q ss_pred CCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Q 001846 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929 (1006)
Q Consensus 850 ~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~ 929 (1006)
....+.+|||||||+.++..+..+|+..|+.|.++.||.+|++.+.. +.||+||||++||+|||++++++||+.
T Consensus 698 -----~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvl~D~~mp~~~g~~~~~~ir~~ 771 (968)
T TIGR02956 698 -----IDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPDGDGVTLLQQLRAI 771 (968)
T ss_pred -----ccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHhC
Confidence 00123479999999999999999999999999999999999999976 569999999999999999999999974
Q ss_pred hchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 930 e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
... ..++|||++|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 772 ~~~-------------------~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 772 YGA-------------------KNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred ccc-------------------cCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 321 113899999999999999999999999999999999999999999874
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). |
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=543.21 Aligned_cols=365 Identities=35% Similarity=0.562 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc
Q 001846 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK--LE 449 (1006)
Q Consensus 372 k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~--~~ 449 (1006)
+.+++++.++|++|++++||||||||++|+|++++|.+...++.++++++.+..++++|..+|++++++++++.+. +.
T Consensus 434 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~ 513 (914)
T PRK11466 434 RAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVS 513 (914)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 3445667788999999999999999999999999999888888999999999999999999999999999999884 56
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++...
T Consensus 514 ~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~---- 589 (914)
T PRK11466 514 VSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD---- 589 (914)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc----
Confidence 7778999999999999999999999999999998888888899999999999999999999999999888776421
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
...+.|+|.
T Consensus 590 -----------------------------------------------------------------------~~~~~i~V~ 598 (914)
T PRK11466 590 -----------------------------------------------------------------------GEQWLVEVE 598 (914)
T ss_pred -----------------------------------------------------------------------CCEEEEEEE
Confidence 124779999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhcc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~ 689 (1006)
|||+|||++.++++|+||++.+. ..+|+||||+|||++++.|||+|.+.|.+++||+|+|++|+.......
T Consensus 599 D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~----- 669 (914)
T PRK11466 599 DSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPV----- 669 (914)
T ss_pred ECCCCCCHHHHHHHhchhhcCCC----CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccc-----
Confidence 99999999999999999998643 347999999999999999999999999999999999999874311000
Q ss_pred ccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCC
Q 001846 690 QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769 (1006)
Q Consensus 690 ~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~ 769 (1006)
+.
T Consensus 670 -------~~----------------------------------------------------------------------- 671 (914)
T PRK11466 670 -------PK----------------------------------------------------------------------- 671 (914)
T ss_pred -------cc-----------------------------------------------------------------------
Confidence 00
Q ss_pred CcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCC
Q 001846 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849 (1006)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 849 (1006)
.+ . .|
T Consensus 672 -------------------~~----------------------~-----~~----------------------------- 676 (914)
T PRK11466 672 -------------------TV----------------------N-----QA----------------------------- 676 (914)
T ss_pred -------------------cc----------------------c-----cc-----------------------------
Confidence 00 0 00
Q ss_pred CCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Q 001846 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929 (1006)
Q Consensus 850 ~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~ 929 (1006)
....+++|||||||+.++..+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+.
T Consensus 677 -----~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~ 751 (914)
T PRK11466 677 -----VRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ 751 (914)
T ss_pred -----cccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 001245899999999999999999999999999999999999988654569999999999999999999999963
Q ss_pred hchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 930 e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+++|||++|++...+...+|+++|+++||.||++.++|...|.+++..
T Consensus 752 ----------------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 752 ----------------------YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred ----------------------CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 2368999999999999999999999999999999999999999998754
|
|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=514.53 Aligned_cols=380 Identities=32% Similarity=0.512 Sum_probs=317.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ-RDYAQTAQICGKALIALINEVLDRAKI 443 (1006)
Q Consensus 365 ~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q-~~~l~~i~~s~~~L~~LIndlLd~ski 443 (1006)
.+++++.+.+++++..++++|++++||||||||++|.|++++|.+...++++ .++++.+..++++|..+|+++++++++
T Consensus 695 ~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~ 774 (1197)
T PRK09959 695 IHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKI 774 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666677788899999999999999999999999999766555444 568899999999999999999999999
Q ss_pred hcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEE
Q 001846 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523 (1006)
Q Consensus 444 e~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~ 523 (1006)
+++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+.+.
T Consensus 775 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~ 854 (1197)
T PRK09959 775 ESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTS 854 (1197)
T ss_pred hcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99999999999999999999999999999999999987654333446899999999999999999999999998777664
Q ss_pred EeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceE
Q 001846 524 LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603 (1006)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (1006)
.... ..+...
T Consensus 855 ~~~~----------------------------------------------------------------------~~~~~~ 864 (1197)
T PRK09959 855 LGHI----------------------------------------------------------------------DDNHAV 864 (1197)
T ss_pred Eeee----------------------------------------------------------------------cCCceE
Confidence 3210 011235
Q ss_pred EEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccc
Q 001846 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEY 683 (1006)
Q Consensus 604 l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~ 683 (1006)
+.|+|.|||+|||++.+++||+||++.+.. +..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+......
T Consensus 865 ~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~ 942 (1197)
T PRK09959 865 IKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQV 942 (1197)
T ss_pred EEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchh
Confidence 789999999999999999999999987543 345799999999999999999999999999999999999997421100
Q ss_pred hhhhccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccC
Q 001846 684 VFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763 (1006)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~ 763 (1006)
.. . .
T Consensus 943 ~~-----------~--------------------------------------------------------~--------- 946 (1197)
T PRK09959 943 AT-----------V--------------------------------------------------------E--------- 946 (1197)
T ss_pred cc-----------c--------------------------------------------------------c---------
Confidence 00 0 0
Q ss_pred ccccCCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccC
Q 001846 764 CWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843 (1006)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~ 843 (1006)
+. . . .|.
T Consensus 947 --------------------------~~----------~---------~------~~~---------------------- 953 (1197)
T PRK09959 947 --------------------------AK----------A---------E------QPI---------------------- 953 (1197)
T ss_pred --------------------------cc----------c---------c------ccc----------------------
Confidence 00 0 0 000
Q ss_pred CCCCCCCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHH
Q 001846 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT 923 (1006)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~ 923 (1006)
......+||||||++.++..+..+|+..|+.+.++.++.+|++.+.. +.||+||+|++||+|||++++
T Consensus 954 -----------~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~ 1021 (1197)
T PRK09959 954 -----------TLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM-QHYDLLITDVNMPNMDGFELT 1021 (1197)
T ss_pred -----------ccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHH
Confidence 00012489999999999999999999999999999999999999876 569999999999999999999
Q ss_pred HHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 924 ~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
++||+. ..++|||++|++...+...+|+++|+++||.||++.++|...|.++..
T Consensus 1022 ~~i~~~----------------------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1022 RKLREQ----------------------NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred HHHHhc----------------------CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999963 236899999999999999999999999999999999999999987754
|
|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=465.19 Aligned_cols=240 Identities=21% Similarity=0.364 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001846 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445 (1006)
Q Consensus 366 ~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~ 445 (1006)
+++++++.+++++.++|++|+++|||||||||++|.|++++|.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777888889999999999999999999999999999988777888999999999999999999999999999999
Q ss_pred CCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEe
Q 001846 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525 (1006)
Q Consensus 446 g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~ 525 (1006)
|+..++..+|++.+++++++..+...++.|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|++...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766677899999999999999999999999999988877532
Q ss_pred eccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEE
Q 001846 526 ERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605 (1006)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 605 (1006)
.. ....+.
T Consensus 594 ~~------------------------------------------------------------------------~~~~l~ 601 (894)
T PRK10618 594 ES------------------------------------------------------------------------SPDRLT 601 (894)
T ss_pred cC------------------------------------------------------------------------CCcEEE
Confidence 10 113578
Q ss_pred EEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
|+|.|||+|||++.+++||+||++.+.+ .+..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+.
T Consensus 602 I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 602 IRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred EEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 9999999999999999999999986543 34557999999999999999999999999999999999999974
|
|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=445.61 Aligned_cols=365 Identities=21% Similarity=0.306 Sum_probs=292.4
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDT-DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~~-~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.+.++|++++||||||||++|.|+++++.+. ......+++++.+..+++++..+|++++++++...+ ...++|+.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 3567899999999999999999999988653 334567789999999999999999999999985543 35689999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC-CCeEEEEEEEeeccccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|+||+.||++||+||++ .|.|.|++..........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~----- 596 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV----- 596 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc-----
Confidence 9999999988754 45788888877654 446899999999999999999999985 467777765432110000
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
. ......+...+.|+|+|+|+|||+
T Consensus 597 -~------------------------------------------------------~~~~~~~~~~v~i~V~D~G~GI~~ 621 (828)
T PRK13837 597 -L------------------------------------------------------SHGVLPPGRYVLLRVSDTGAGIDE 621 (828)
T ss_pred -c------------------------------------------------------ccccCCCCCEEEEEEEECCCCCCH
Confidence 0 000011234688999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhccccCCCCCC
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~~~~~~~ 697 (1006)
+.+++||+||++.+. +|+||||+|||++++.|||+|++.|.+|+||+|+|++|.....+.. +
T Consensus 622 e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~------------~ 683 (828)
T PRK13837 622 AVLPHIFEPFFTTRA------GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVA------------P 683 (828)
T ss_pred HHHHHhhCCcccCCC------CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCC------------c
Confidence 999999999996432 7999999999999999999999999999999999999864311000 0
Q ss_pred CCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhh
Q 001846 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777 (1006)
Q Consensus 698 ~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~ 777 (1006)
..
T Consensus 684 ~~------------------------------------------------------------------------------ 685 (828)
T PRK13837 684 QA------------------------------------------------------------------------------ 685 (828)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCcccccc
Q 001846 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL 857 (1006)
Q Consensus 778 ~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 857 (1006)
. ..| ...+ ..
T Consensus 686 ----------------------------------~-----~~~-----------------------~~~~--------~~ 695 (828)
T PRK13837 686 ----------------------------------F-----FGP-----------------------GPLP--------RG 695 (828)
T ss_pred ----------------------------------c-----CCC-----------------------cccC--------CC
Confidence 0 000 0000 01
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCC-CCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhh
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~ 936 (1006)
.+.+|||||||+.++..+...|+..||.+..+.++.+|++.+... ..||+||+ .||.|+|+++++.|+..
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~------- 766 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA------- 766 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh-------
Confidence 245899999999999999999999999999999999999988642 34899999 79999999999999863
Q ss_pred hccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
...+|||++|++.......+++++| ++||.||++.++|..+|.+++...
T Consensus 767 ---------------~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 767 ---------------APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred ---------------CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 2368999999999999999999999 999999999999999999988643
|
|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=356.07 Aligned_cols=227 Identities=27% Similarity=0.491 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST--QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 378 a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~--q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
.++.+..|+|++||||||||+++.++++.|.+...... ...++..-+...++|.+||||+|.+||++.....++.+.+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34456789999999999999999999999988766544 5678999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCE-EEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeeccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIE-LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTD 533 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 533 (1006)
|+...+.+++..|.....+..+. +.-.+ +.-+.++..||.++-||+.|+++||+||++.| +|.+.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998875555444 32233 34467899999999999999999999999775 677766421
Q ss_pred cccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCC
Q 001846 534 AKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613 (1006)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 613 (1006)
...+.|+|.|.|.
T Consensus 372 -------------------------------------------------------------------~~~v~iSI~D~G~ 384 (459)
T COG5002 372 -------------------------------------------------------------------ETWVEISISDQGL 384 (459)
T ss_pred -------------------------------------------------------------------CcEEEEEEccCCC
Confidence 1257899999999
Q ss_pred CCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcccc
Q 001846 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680 (1006)
Q Consensus 614 GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~ 680 (1006)
|||.+++++||++||++|..++|..|||||||+|+|.+|+.|||.||.+|..|+||+|+|+||+...
T Consensus 385 gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 385 GIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred CCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998653
|
|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=373.51 Aligned_cols=370 Identities=19% Similarity=0.236 Sum_probs=286.8
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDT-----DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~-----~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
...+|++.++||+||||+.|.|+++++... .......++++.+....+++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 345799999999999999999999988532 1234456788889999999999999999998743 3455678
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDA 534 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~ 534 (1006)
++..+++.+...+. ....+++.+.+..++..+ .+.+|+.+++|++.||++||+||+..| .|.|++........
T Consensus 238 ~l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 99999998877654 344577888777666555 378899999999999999999998654 45444432110000
Q ss_pred ccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCC
Q 001846 535 KDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614 (1006)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 614 (1006)
.+. ..........+.|+|.|+|+|
T Consensus 312 -----------------------------------~~~---------------------~~~~~~~~~~~~i~v~D~G~G 335 (540)
T PRK13557 312 -----------------------------------DLA---------------------MYHGLPPGRYVSIAVTDTGSG 335 (540)
T ss_pred -----------------------------------ccc---------------------cccCCCCCCEEEEEEEcCCCC
Confidence 000 000011234578999999999
Q ss_pred CChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhccccCCC
Q 001846 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE 694 (1006)
Q Consensus 615 I~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~~~~ 694 (1006)
||++.++++|+||++.+. ..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|........
T Consensus 336 i~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~---------- 401 (540)
T PRK13557 336 MPPEILARVMDPFFTTKE----EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENP---------- 401 (540)
T ss_pred CCHHHHHhccCCCcccCC----CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCC----------
Confidence 999999999999996542 346999999999999999999999999999999999999863211000
Q ss_pred CCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchh
Q 001846 695 DLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774 (1006)
Q Consensus 695 ~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~ 774 (1006)
++.
T Consensus 402 --~~~--------------------------------------------------------------------------- 404 (540)
T PRK13557 402 --EQE--------------------------------------------------------------------------- 404 (540)
T ss_pred --CCC---------------------------------------------------------------------------
Confidence 000
Q ss_pred HhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCccc
Q 001846 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ 854 (1006)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 854 (1006)
+ ++ . ..
T Consensus 405 ---------------~----------------------------~~------------------------~-------~~ 410 (540)
T PRK13557 405 ---------------P----------------------------KA------------------------R-------AI 410 (540)
T ss_pred ---------------C----------------------------CC------------------------c-------cc
Confidence 0 00 0 00
Q ss_pred cccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC-CCHHHHHHHHHhhhchh
Q 001846 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE-MDGFEATRRIRQMESKA 933 (1006)
Q Consensus 855 ~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~e~~~ 933 (1006)
....+++||||||++..+..+..+|+..|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+.
T Consensus 411 ~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~---- 486 (540)
T PRK13557 411 DRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR---- 486 (540)
T ss_pred ccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----
Confidence 01124589999999999999999999999999999999999998865335999999999997 9999999999863
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccCCC
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~~~ 1003 (1006)
.+.+|||++|..........++..|+++|+.||++.++|...+.+++.....
T Consensus 487 ------------------~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 538 (540)
T PRK13557 487 ------------------QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPTG 538 (540)
T ss_pred ------------------CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCCC
Confidence 2358999999998888888899999999999999999999999998876543
|
|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=349.09 Aligned_cols=244 Identities=25% Similarity=0.368 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHH
Q 001846 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-------STQRDYAQTAQICGKAL 430 (1006)
Q Consensus 358 ~~~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-------~~q~~~l~~i~~s~~~L 430 (1006)
..++.+.+.++++.+.++++..+++.+|++.+||||||||++|.+++++|.+...+ +..+++++.+..+.+.|
T Consensus 127 ~~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (380)
T PRK09303 127 LLQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEI 206 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666667777899999999999999999999999999754322 23567889999999999
Q ss_pred HHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHh
Q 001846 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSV 510 (1006)
Q Consensus 431 ~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAi 510 (1006)
..+|++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+.++...| .+.+|+.+|+||+.||++||+
T Consensus 207 ~~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAi 285 (380)
T PRK09303 207 ERLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAI 285 (380)
T ss_pred HHHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766 489999999999999999999
Q ss_pred ccCCC-CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhH
Q 001846 511 KFTER-GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589 (1006)
Q Consensus 511 KfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1006)
||++. |.|.|.+...
T Consensus 286 k~~~~~~~I~i~~~~~---------------------------------------------------------------- 301 (380)
T PRK09303 286 KYTPEGGTITLSMLHR---------------------------------------------------------------- 301 (380)
T ss_pred hcCCCCceEEEEEEec----------------------------------------------------------------
Confidence 99976 4565554210
Q ss_pred hhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCce
Q 001846 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669 (1006)
Q Consensus 590 ~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~Gs 669 (1006)
+...+.|+|.|+|+|||++.+++||+||++.+. .+..+|+||||+|||++|+.|||+|++.|.+++|+
T Consensus 302 ----------~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt 369 (380)
T PRK09303 302 ----------TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGS 369 (380)
T ss_pred ----------CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 112478999999999999999999999998875 34557999999999999999999999999999999
Q ss_pred EEEEEEEcc
Q 001846 670 TFSFTAVFG 678 (1006)
Q Consensus 670 tF~f~lp~~ 678 (1006)
+|+|++|..
T Consensus 370 ~f~i~lP~~ 378 (380)
T PRK09303 370 CFHFTLPVY 378 (380)
T ss_pred EEEEEEecC
Confidence 999999974
|
|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=353.43 Aligned_cols=224 Identities=25% Similarity=0.434 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcC--CCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeE
Q 001846 377 AADVAKSQFLATVSHEIRTPMNGILGMLALLLDT--DLSST-QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453 (1006)
Q Consensus 377 ~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~--~l~~~-q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~ 453 (1006)
+.++.++.|++++||||||||++|+|.++.|... .++++ +.+.+..|...+.+|.++|++|||++|+++|.++++..
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~ 734 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLD 734 (890)
T ss_pred HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 3456789999999999999999999999999753 45555 67899999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCe-EEEEEEEeecccccc
Q 001846 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH-IFVKVHLAERTMVKT 532 (1006)
Q Consensus 454 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~~ 532 (1006)
+..+.+++.+++.........+. +.+.+++++| .+..|+..|.|||.||+.||+||++.|. |.|.+...
T Consensus 735 ~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~------- 804 (890)
T COG2205 735 WVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE------- 804 (890)
T ss_pred hhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe-------
Confidence 99999999999987766555444 5666677776 5899999999999999999999998875 77766532
Q ss_pred ccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecC
Q 001846 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612 (1006)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 612 (1006)
...++|+|.|+|
T Consensus 805 --------------------------------------------------------------------~~~v~~~V~DeG 816 (890)
T COG2205 805 --------------------------------------------------------------------RENVVFSVIDEG 816 (890)
T ss_pred --------------------------------------------------------------------cceEEEEEEeCC
Confidence 135789999999
Q ss_pred CCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcccc
Q 001846 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680 (1006)
Q Consensus 613 ~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~ 680 (1006)
+|||++++++||++||+.+.... ..|+|||||||+.+|+.|||+|++.+.+++|++|+|++|....
T Consensus 817 pGIP~~~~~~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 817 PGIPEGELERIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CCCChhHHHHhhhhhhcCCCCCC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 99999999999999999987443 5799999999999999999999999999999999999998653
|
|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=327.12 Aligned_cols=220 Identities=28% Similarity=0.365 Sum_probs=190.2
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDL-SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
++.+|++++||||||||++|.|+++++.+... ++....+++.+..++++|..++++++++++++.+.......++++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999976543 34567789999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDET 538 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~~ 538 (1006)
+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------- 346 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------- 346 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-------------
Confidence 9998887766555 77888888776553 488999999999999999999999764 566554321
Q ss_pred ccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChh
Q 001846 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618 (1006)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 618 (1006)
...+.|+|+|+|+|||++
T Consensus 347 --------------------------------------------------------------~~~~~i~V~D~G~Gi~~~ 364 (430)
T PRK11006 347 --------------------------------------------------------------PQGAEFSVEDNGPGIAPE 364 (430)
T ss_pred --------------------------------------------------------------CCEEEEEEEEcCCCCCHH
Confidence 124679999999999999
Q ss_pred HHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 619 AQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 619 ~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
.++++|+|||+.+.+.++..+|+||||+|||++++.|||+|+++|.+++||+|+|++|..
T Consensus 365 ~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 365 HIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred HHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999887777788999999999999999999999999999999999999854
|
|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=319.31 Aligned_cols=226 Identities=27% Similarity=0.361 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
++..+.++....+.+|++++||||||||+.|.+.++++.+. ++.+. +.+....++|..++++++.+++++.+...
T Consensus 200 ~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~~~~ 274 (433)
T PRK10604 200 QMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRPQNE 274 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 34445555566788999999999999999999999988632 22222 23777889999999999999999999998
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
+...++++.+++++++..+......+++++.+..+ +..+.+|+..++||+.||++||+||+. |.|.|++...+
T Consensus 275 ~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~--- 347 (433)
T PRK10604 275 LHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG--- 347 (433)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC---
Confidence 88999999999999999999888888877765322 335778999999999999999999995 67777764321
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
..+.|+|+
T Consensus 348 ------------------------------------------------------------------------~~~~I~V~ 355 (433)
T PRK10604 348 ------------------------------------------------------------------------NQACLIVE 355 (433)
T ss_pred ------------------------------------------------------------------------CEEEEEEE
Confidence 24779999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|+|+|||++.++++|+||++.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 356 D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 356 DDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred EcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 9999999999999999999999888777889999999999999999999999999999999999999754
|
|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=311.65 Aligned_cols=220 Identities=22% Similarity=0.312 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 376 e~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
++......+|++++||||||||+.|.++++.|.+..... ..+....+.....++..+++++++.++.+++...+....+
T Consensus 260 ~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~-~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~ 338 (485)
T PRK10815 260 RERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS-VEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELH 338 (485)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccee
Confidence 334445578999999999999999999999987654221 2233455677788999999999999999999888888899
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
++..+++++++.+...+..+++++.+.+++.. .+.+|+..|.||+.||++||+||+.. .|.|++...
T Consensus 339 ~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~---------- 405 (485)
T PRK10815 339 SVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT---------- 405 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe----------
Confidence 99999999999999999999999998876543 57799999999999999999999965 355544321
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
...+.|+|+|+|+||
T Consensus 406 -----------------------------------------------------------------~~~v~I~V~D~G~GI 420 (485)
T PRK10815 406 -----------------------------------------------------------------DEHLHIVVEDDGPGI 420 (485)
T ss_pred -----------------------------------------------------------------CCEEEEEEEECCCCc
Confidence 124779999999999
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
|++.++++|+||++.+.+ .+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 421 ~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 421 PESKRELIFDRGQRADTL----RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred CHHHHHHHhCCcccCCCC----CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 999999999999987643 25999999999999999999999999999999999999864
|
|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=314.57 Aligned_cols=217 Identities=22% Similarity=0.261 Sum_probs=168.3
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
...++++.++|||||||++|.|++++|.....+..+......+......+..++..+.++. .........++|+..+
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVI---PQSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCcccccccccHHHH
Confidence 3457888899999999999999999997653332233333333433333333333333332 2333455678999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCe---EEEEEEEeeccccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH---IFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~---I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++++..+...+..+++.+.+..++.+| .+.+|+.+|+||+.||++||+||+..|. ..|.+....
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~----------- 419 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL----------- 419 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-----------
Confidence 9999999999999999999988877666 4789999999999999999999996652 222222110
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+...+.|+|+|||+|||+
T Consensus 420 --------------------------------------------------------------~~~~~~~~V~D~G~Gi~~ 437 (494)
T TIGR02938 420 --------------------------------------------------------------NGDLIVVSILDSGPGIPQ 437 (494)
T ss_pred --------------------------------------------------------------cCCEEEEEEEeCCCCCCH
Confidence 123578999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
+.+++||+||++.+... ++||||||+|||+||+.|||+|+++|.+++||+|+|++|+
T Consensus 438 ~~~~~iF~~f~~~~~~~---~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 438 DLRYKVFEPFFTTKGGS---RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred HHHHHhcCCCcccCCCC---CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 99999999999876542 5799999999999999999999999999999999999985
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes. |
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=299.73 Aligned_cols=263 Identities=26% Similarity=0.427 Sum_probs=214.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH
Q 001846 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406 (1006)
Q Consensus 327 ~~~~w~~~~~~~~~~~i~ll~~~~~~~~~~~~~~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~el 406 (1006)
...||...-.....-+=..+++.++ +...+|.++....|++|....+|...+||++|.||+.|.+++++
T Consensus 480 ~s~PWs~~ei~~A~~LR~aiv~ivl-----------~~aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~l 548 (750)
T COG4251 480 QSQPWSEVEIEAALELRKAIVGIVL-----------RHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQL 548 (750)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 3567876655444333333333322 23456677777888899999999999999999999999999999
Q ss_pred HhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 001846 407 LLDT---DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483 (1006)
Q Consensus 407 L~~~---~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~ 483 (1006)
|... .++++.++++..+.+....+.+||+|++.++++..-...+. +.|+.+++++++...+....+.|+++.+.
T Consensus 549 L~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i~- 625 (750)
T COG4251 549 LSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRIA- 625 (750)
T ss_pred hhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC--CcchHHHHHHHHHhcccccccccceEEec-
Confidence 9754 57788999999999999999999999999999976655554 78999999999999999999999998873
Q ss_pred CCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccc
Q 001846 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLE 563 (1006)
Q Consensus 484 ~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 563 (1006)
+ +|. +.+|+.++.|++.||+.|||||..++.-.|.|....
T Consensus 626 -~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r------------------------------------- 665 (750)
T COG4251 626 -P-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAER------------------------------------- 665 (750)
T ss_pred -c-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec-------------------------------------
Confidence 3 664 889999999999999999999986653223332211
Q ss_pred cccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccc
Q 001846 564 AADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643 (1006)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGL 643 (1006)
....+.++|.|+|+||++...++||..|.+..+. .+|.|||+
T Consensus 666 ------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~--~~y~gtG~ 707 (750)
T COG4251 666 ------------------------------------QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR--DEYLGTGL 707 (750)
T ss_pred ------------------------------------cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCch--hhhcCCCc
Confidence 1123679999999999999999999999988653 46789999
Q ss_pred cHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccc
Q 001846 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681 (1006)
Q Consensus 644 GLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~ 681 (1006)
||+|||+|++.|+|+|+|+|.+|+|+||.|++|....+
T Consensus 708 GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 708 GLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred cHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 99999999999999999999999999999999987644
|
|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=307.23 Aligned_cols=233 Identities=24% Similarity=0.416 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
.++..+.+.....+.+|++.+|||+||||+.|.+.++.+.+... +...+.+..+....++|..++++++++++.+.+..
T Consensus 227 n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~ 305 (466)
T PRK10549 227 NQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGAL 305 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 34444555566677899999999999999999999999976432 23345677888888999999999999999999999
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeec
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAER 527 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~ 527 (1006)
.+...++|+.+++++++..+......+++++.+.+++.. .+.+|+.++.|++.||++||+||++. |.|.|.+...
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~-- 381 (466)
T PRK10549 306 AYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQR-- 381 (466)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence 999999999999999999999999999999998776543 47799999999999999999999975 5677665421
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+.|+
T Consensus 382 -------------------------------------------------------------------------~~~~~i~ 388 (466)
T PRK10549 382 -------------------------------------------------------------------------DKTLRLT 388 (466)
T ss_pred -------------------------------------------------------------------------CCEEEEE
Confidence 1247799
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|.|+|+|||++.++++|+||++.+.+..+..+|+||||+||+++++.|||++.++|.+++|++|+|++|+..
T Consensus 389 V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 389 FADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred EEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 999999999999999999999998877777789999999999999999999999999999999999999754
|
|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=301.34 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=183.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTD-LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~-l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.+..+|.+.+|||+||||++|.|+++++.+.. ..++.+++++.+....+++..++++++++++.. ..+..++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34567999999999999999999999987643 334566788899999999999999999999743 3456789999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++++++..+...++++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+.. |.|.|.+...
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------ 377 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------ 377 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe------------
Confidence 999999999999999999999998776554 47899999999999999999999754 5676665421
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
...+.|+|+|+|+|||+
T Consensus 378 ---------------------------------------------------------------~~~~~i~V~D~G~Gi~~ 394 (457)
T PRK10364 378 ---------------------------------------------------------------GAGVKISVTDSGKGIAA 394 (457)
T ss_pred ---------------------------------------------------------------CCeEEEEEEECCCCCCH
Confidence 12378999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+.++++|++|++.+ .+|+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 395 ~~~~~if~~~~~~k------~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 395 DQLEAIFTPYFTTK------AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred HHHHHHhCccccCC------CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 99999999998432 358999999999999999999999999999999999999753
|
|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=324.36 Aligned_cols=222 Identities=24% Similarity=0.402 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD--LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 378 a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~--l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
.++.+.+|++.+||||||||++|.|+++++.... ......++++.+.....++..+|++++++++++++.+.++..++
T Consensus 660 ~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~ 739 (895)
T PRK10490 660 REQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWL 739 (895)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 3456789999999999999999999999886432 22334467888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDA 534 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~ 534 (1006)
++.+++++++..+......+++.+. +++..| .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 740 ~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~--------- 807 (895)
T PRK10490 740 TLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE--------- 807 (895)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe---------
Confidence 9999999999999888877776664 455544 589999999999999999999999765 566655321
Q ss_pred ccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCC
Q 001846 535 KDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614 (1006)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 614 (1006)
...+.|+|.|+|+|
T Consensus 808 ------------------------------------------------------------------~~~v~I~V~D~G~G 821 (895)
T PRK10490 808 ------------------------------------------------------------------GERLQLDVWDNGPG 821 (895)
T ss_pred ------------------------------------------------------------------CCEEEEEEEECCCC
Confidence 12478999999999
Q ss_pred CChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 615 I~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
||++.+++||+||++.+.. +..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 822 I~~e~~~~IFepF~~~~~~--~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 822 IPPGQEQLIFDKFARGNKE--SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCHHHHHHhcCCCccCCCC--CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 9999999999999987643 23469999999999999999999999999999999999999853
|
|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=270.93 Aligned_cols=211 Identities=23% Similarity=0.400 Sum_probs=182.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLA---LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~e---lL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
..|+.+.+||||+.||.+|.++.+ +|+++...++-.+.+..|..-.++|-.+..++-.|++--... ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 468999999999999999999875 667888888888999999999999999999999998754433 5678999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEeeccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE---RGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
+.|++++.++....+..+..+....++. |.+|.+|+.||+|||.|||+||+..+. ++.|.|.+..
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~----------- 527 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR----------- 527 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe-----------
Confidence 9999999999999999999998876553 568999999999999999999999974 3555554431
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
++..+.|+|.|||+||
T Consensus 528 ----------------------------------------------------------------~~~~v~l~VrDnGpGi 543 (603)
T COG4191 528 ----------------------------------------------------------------EGGQVVLTVRDNGPGI 543 (603)
T ss_pred ----------------------------------------------------------------cCCeEEEEEccCCCCC
Confidence 2235889999999999
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+++...++|+||+..+ .-..|.||||+||+.|++-|||+|.+.+.++.|+.|+++|+
T Consensus 544 ~~e~~~~lFePF~TtK----~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~ 600 (603)
T COG4191 544 APEALPHLFEPFFTTK----PVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELR 600 (603)
T ss_pred CHHHHHhhcCCccccC----cccCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEee
Confidence 9999999999999543 33469999999999999999999999999999999999986
|
|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=286.64 Aligned_cols=223 Identities=25% Similarity=0.286 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 001846 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLEL 450 (1006)
Q Consensus 371 ~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l 450 (1006)
+..+.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+......
T Consensus 126 ~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~ 200 (356)
T PRK10755 126 LVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSG 200 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 334444445556789999999999999999999998864322 1 12334455678999999999999988766666
Q ss_pred eeEeecH-HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecc
Q 001846 451 EAVLFNL-RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERT 528 (1006)
Q Consensus 451 ~~~~~dL-~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~ 528 (1006)
...++++ .+++..+...+...+..+++.+.+... ..+..+.+|+..+++|+.||++||+||++. |.|.|++...
T Consensus 201 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~--- 276 (356)
T PRK10755 201 HYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPES-AADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE--- 276 (356)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccC-CCceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc---
Confidence 6667888 999999998899999999998877422 234568999999999999999999999965 4566655321
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 277 ------------------------------------------------------------------------~~~~~i~V 284 (356)
T PRK10755 277 ------------------------------------------------------------------------DGGAVLAV 284 (356)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12477999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCC-CceEEEEEEEcc
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ-VGSTFSFTAVFG 678 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g-~GstF~f~lp~~ 678 (1006)
+|+|+||+++..+++|+||++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 285 ~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 285 EDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred EECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 999999999999999999998653 346999999999999999999999999998 999999999853
|
|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=295.66 Aligned_cols=229 Identities=27% Similarity=0.408 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
++..+.+.....+.+|++.+||||||||+.|.+.++.+...... .+..+.+..+.....++..++++++++++.+.+..
T Consensus 250 ~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~ 329 (482)
T PRK09835 250 HMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQL 329 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555566678899999999999999999999887654332 34455666777778899999999999999999988
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeec
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAER 527 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~ 527 (1006)
.+...++|+.++++++...+...+.++++.+.+..+ +..+.+|+.+|+||+.||++||+||+..| .|.|++...
T Consensus 330 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~-- 404 (482)
T PRK09835 330 IPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV-- 404 (482)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe--
Confidence 888889999999999999999999999999876532 34688999999999999999999999765 476665421
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+.|+
T Consensus 405 -------------------------------------------------------------------------~~~~~i~ 411 (482)
T PRK09835 405 -------------------------------------------------------------------------DHQVQLV 411 (482)
T ss_pred -------------------------------------------------------------------------CCEEEEE
Confidence 1236799
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
|+|+|+|||++.++++|+|||+.+.+.++..+|+||||+||+++++.|||+|+++|.+ +|++|++++|.
T Consensus 412 v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 412 VENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred EEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 9999999999999999999999988776666899999999999999999999999975 69999999985
|
|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=293.63 Aligned_cols=226 Identities=30% Similarity=0.431 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 371 ~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
+..+.+.......+|.+++||||||||+.+.+.++.+.....+ ++..++++.+.....+|..++++++++++++.....
T Consensus 230 m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 309 (457)
T TIGR01386 230 MLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLA 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3344444555567899999999999999999999988654433 344567777777889999999999999999999888
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERT 528 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~ 528 (1006)
++..++++.++++++++.+...+.++++++.+.. . ..+.+|+..|.+++.||++||+||+.. |.|.|++...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~--- 382 (457)
T TIGR01386 310 LERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR--- 382 (457)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec---
Confidence 8889999999999999999999999998876643 2 468999999999999999999999965 5676665421
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 383 ------------------------------------------------------------------------~~~~~i~v 390 (457)
T TIGR01386 383 ------------------------------------------------------------------------SDEVRVSV 390 (457)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12477999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+|+|+|||++.++++|+|||+.+.+.++..+|+||||+||+++++.|||+|.+.+ +++|++|++++|
T Consensus 391 ~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 391 SNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred EeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999999999999999999999887766778999999999999999999999999 999999999986
|
Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. |
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=307.18 Aligned_cols=226 Identities=21% Similarity=0.317 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccee
Q 001846 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452 (1006)
Q Consensus 373 ~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~ 452 (1006)
.+.++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.++|..++++++++++++.+....+.
T Consensus 476 ~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~ 555 (703)
T TIGR03785 476 ARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEV 555 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 34445555667899999999999999999999999877777788889999999999999999999999999998888888
Q ss_pred EeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccc
Q 001846 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVK 531 (1006)
Q Consensus 453 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~ 531 (1006)
.++|+.+++++++..+......+++.+.+.. . +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 556 ~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~------ 626 (703)
T TIGR03785 556 EDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN------ 626 (703)
T ss_pred eeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc------
Confidence 9999999999999999998888887776542 2 3368999999999999999999999965 4565554321
Q ss_pred cccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEec
Q 001846 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611 (1006)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 611 (1006)
...+.|+|+|+
T Consensus 627 ---------------------------------------------------------------------~~~v~I~V~D~ 637 (703)
T TIGR03785 627 ---------------------------------------------------------------------KSHALLTVSNE 637 (703)
T ss_pred ---------------------------------------------------------------------CCEEEEEEEEc
Confidence 12477999999
Q ss_pred CCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCC-CceEEEEEEE
Q 001846 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ-VGSTFSFTAV 676 (1006)
Q Consensus 612 G~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g-~GstF~f~lp 676 (1006)
|+|||++.+++||+||++.+.......+|+||||+|||++++.|||+|.+.|.++ +|++|+|++|
T Consensus 638 G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 638 GPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 9999999999999999987765555556899999999999999999999999976 8999999986
|
This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase. |
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=288.71 Aligned_cols=229 Identities=24% Similarity=0.381 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
....+.+.....+.+|++++||||||||++|.+.++++....... ..+..+....++|..+|++++++++.+.. ..
T Consensus 231 ~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~-~~ 306 (461)
T PRK09470 231 QMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK-NH 306 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Confidence 334445555566778999999999999999999999886543222 24567788899999999999999998765 35
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
++..++++..++++++..+...+..+++.+.+...+ .+..+.+|+..|.+++.||++||+||++ +.|.|+++..
T Consensus 307 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~---- 380 (461)
T PRK09470 307 LERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPP-GPWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD---- 380 (461)
T ss_pred cccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCC-cceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE----
Confidence 677789999999999999888888899999887433 2457899999999999999999999996 5566665421
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
...+.|+|+
T Consensus 381 -----------------------------------------------------------------------~~~~~i~V~ 389 (461)
T PRK09470 381 -----------------------------------------------------------------------KDGLTITVD 389 (461)
T ss_pred -----------------------------------------------------------------------CCEEEEEEE
Confidence 124679999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|+|+||+++.++++|+||++.+...++..+|+||||+||+++++.|||++.+.|.+++||+|++++|+..
T Consensus 390 D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 390 DDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred ECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 9999999999999999999998877777789999999999999999999999999999999999999753
|
|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=262.49 Aligned_cols=223 Identities=26% Similarity=0.389 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 379 ~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.++-+.++.+++|||||||.||.|.++||...-.++..++|.+.|-..+++|.+|++-+.-++ .....+..++|++
T Consensus 129 ~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~----~~rp~~r~~~NIH 204 (363)
T COG3852 129 QRAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLG----PQRPGDRVPVNIH 204 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccccchHH
Confidence 345567899999999999999999999998766666689999999999999999998875554 3444566789999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC---C--CeEEEEEEEeeccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE---R--GHIFVKVHLAERTMVKTD 533 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~~~ 533 (1006)
.+++.|..+.+..+ ..+|.|.-++++.+|. +.+|+++|.|++.||+.||...-. . |.|.++-+..-...
T Consensus 205 ~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~---- 278 (363)
T COG3852 205 EVLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLT---- 278 (363)
T ss_pred HHHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEE----
Confidence 99999998876654 4679999999999997 889999999999999999999864 3 67766543211000
Q ss_pred cccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCC
Q 001846 534 AKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613 (1006)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 613 (1006)
. .+......+.++|.|||+
T Consensus 279 ------------------------------i-------------------------------~g~r~rl~l~leViDNGP 297 (363)
T COG3852 279 ------------------------------I-------------------------------AGTRYRLALPLEVIDNGP 297 (363)
T ss_pred ------------------------------c-------------------------------cCceeEeeeeeEEecCCC
Confidence 0 011123356789999999
Q ss_pred CCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 614 GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|||++.++++|.||... +.+||||||+|+++||..|||.|.++|.|| .|+|++.+|..+
T Consensus 298 GVP~~L~~~lF~P~Vs~------r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 298 GVPPDLQDHLFYPMVSG------REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCChHHhhhcccccccc------CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 99999999999999832 347999999999999999999999999997 599999999865
|
|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=287.68 Aligned_cols=221 Identities=19% Similarity=0.314 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS-TQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 371 ~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~-~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
+..+.+.......+|++.+||||||||+.+.+.++.+.....++ ....+++.+....+++..++++++++++++.+...
T Consensus 226 ~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~ 305 (449)
T PRK10337 226 LFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNL 305 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 33344444555678999999999999999999998876544333 34568889999999999999999999999988776
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERT 528 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~ 528 (1006)
....++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||++.| .|.|++..
T Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~---- 380 (449)
T PRK10337 306 QDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA---- 380 (449)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe----
Confidence 6778899999999999999999999999999887643 34578999999999999999999999764 55544320
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
..++|
T Consensus 381 ---------------------------------------------------------------------------~~i~i 385 (449)
T PRK10337 381 ---------------------------------------------------------------------------RNFTV 385 (449)
T ss_pred ---------------------------------------------------------------------------eEEEE
Confidence 13889
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEE
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~ 674 (1006)
+|+|+|||++.++++|+||++.+.. ..+|+||||+||++++++|||+|+++|.+++|++|+++
T Consensus 386 ~D~G~Gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~ 448 (449)
T PRK10337 386 RDNGPGVTPEALARIGERFYRPPGQ---EATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVS 448 (449)
T ss_pred EECCCCCCHHHHHHhcccccCCCCC---CCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEe
Confidence 9999999999999999999986532 34699999999999999999999999999999999876
|
|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=285.29 Aligned_cols=219 Identities=23% Similarity=0.326 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
.++..+.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++++.+..
T Consensus 216 n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~-- 288 (435)
T PRK09467 216 NQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQE-- 288 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--
Confidence 344455566677888999999999999999999988877532 2334566778889999999999999987643
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeecc
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 528 (1006)
....++++.+++++++..+. ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 289 -~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~--- 358 (435)
T PRK09467 289 -MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE--- 358 (435)
T ss_pred -CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec---
Confidence 34567899999999987654 3445555555443 44789999999999999999999998 56677665421
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 359 ------------------------------------------------------------------------~~~~~i~V 366 (435)
T PRK09467 359 ------------------------------------------------------------------------GKRAWFQV 366 (435)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12477999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
.|+|+||+++..+++|+||++.+.+. ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 367 ~D~G~Gi~~~~~~~~~~~f~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 367 EDDGPGIPPEQLKHLFQPFTRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred EecCCCcCHHHHHHhcCCcccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 99999999999999999999987653 347999999999999999999999999999999999999874
|
|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=274.37 Aligned_cols=218 Identities=30% Similarity=0.413 Sum_probs=190.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDT--DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.+.+|++.++|||||||++|.++++++... ..++..+++++.+..+.+++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++..+...+......+++.+.+.++ . +..+.+|+..|.+|+.||++||+||+.. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 99999999999999999999998773 2 3468999999999999999999999865 4565554321
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
...+.|.|.|+|+|||+
T Consensus 259 ---------------------------------------------------------------~~~~~i~i~d~G~gi~~ 275 (333)
T TIGR02966 259 ---------------------------------------------------------------GGGAEFSVTDTGIGIAP 275 (333)
T ss_pred ---------------------------------------------------------------CCEEEEEEEecCCCCCH
Confidence 11367999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEE
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~l 675 (1006)
+.++++|+||++.+...+...+|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 276 ~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 276 EHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred HHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 9999999999988776666678999999999999999999999999999999999874
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). |
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=272.54 Aligned_cols=218 Identities=26% Similarity=0.418 Sum_probs=173.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
.+..+|++.+||||||||++|.|+++++.+...++..+++++.+..+++++..++++++++++.. ...+.++..
T Consensus 128 ~~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~ 201 (348)
T PRK11073 128 VAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHK 201 (348)
T ss_pred HHHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHH
Confidence 34578999999999999999999999988766667778899999999999999999999775432 234679999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccC--CCCeEEEEEEEeeccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT--ERGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|++.......
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~-------- 271 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT-------- 271 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc--------
Confidence 9999888777554 467888877766655 478999999999999999999997 3455555442110000
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
..+......+.++|.|+|+|||+
T Consensus 272 ---------------------------------------------------------~~~~~~~~~~~i~v~D~G~Gi~~ 294 (348)
T PRK11073 272 ---------------------------------------------------------LHGERYRLAARIDIEDNGPGIPP 294 (348)
T ss_pred ---------------------------------------------------------cCCccCCceEEEEEEeCCCCCCH
Confidence 00001112467999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
+.++++|+||++.. .+|+||||+|||++++.|||+|+++|.+++ ++|++++|+
T Consensus 295 ~~~~~iF~~~~~~~------~~g~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 295 HLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred HHHhhccCCcccCC------CCCccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 99999999998532 369999999999999999999999999884 999999986
|
|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=273.41 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=191.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll 461 (1006)
..+|++.++||+|||++.+.+.++++.+....+...++++.+....+++..++++++++++++.........++++.+++
T Consensus 256 ~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (475)
T PRK11100 256 VEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAALL 335 (475)
T ss_pred HHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHHH
Confidence 45789999999999999999999998875555667789999999999999999999999999988887788899999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecccccccccccccc
Q 001846 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDETLL 540 (1006)
Q Consensus 462 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~ 540 (1006)
+++...+...+..+++.+.+..+ +..+.+|...|.+++.||+.||+||+.+ |.|.|++...
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~--------------- 397 (475)
T PRK11100 336 EELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD--------------- 397 (475)
T ss_pred HHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc---------------
Confidence 99999999999999999988765 4468899999999999999999999854 6777766421
Q ss_pred CCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHH
Q 001846 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620 (1006)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 620 (1006)
+..+.++|+|+|+|||++.+
T Consensus 398 ------------------------------------------------------------~~~~~i~i~D~G~Gi~~~~~ 417 (475)
T PRK11100 398 ------------------------------------------------------------GEQVALSVEDQGPGIPDYAL 417 (475)
T ss_pred ------------------------------------------------------------CCEEEEEEEECCCCCCHHHH
Confidence 12477999999999999999
Q ss_pred hhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 621 ~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
+++|++|++.+.. ....+|+||||+||+++++.|||+|.++|.++.|++|.+++|..
T Consensus 418 ~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 418 PRIFERFYSLPRP-ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred HHHHHHHccCCCC-CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 9999999977542 23446999999999999999999999999999999999999863
|
|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=249.93 Aligned_cols=217 Identities=42% Similarity=0.687 Sum_probs=185.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccceeEeecHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK-LELEAVLFNLRA 459 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~-~~l~~~~~dL~~ 459 (1006)
.+..|++.++||+|||++.+.+.++++.....+ .++.++..+....+++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999998866544222 267888888899999999999999999998873 444466778999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+++++...+...+..+++.+....+ .+..+.+|+.+++||+.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999999889999886544 3446889999999999999999999998777777764211
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
..+.++|.|+|+||+++.
T Consensus 258 --------------------------------------------------------------~~i~i~V~D~G~Gi~~~~ 275 (336)
T COG0642 258 --------------------------------------------------------------EQVTISVEDTGPGIPEEE 275 (336)
T ss_pred --------------------------------------------------------------CeEEEEEEcCCCCCCHHH
Confidence 157899999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
++++|+||++.+...+ |+||||+||+++++.|||+|.+.|.++.||+|++++|...
T Consensus 276 ~~~if~~~~~~~~~~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 276 LERIFEPFFRTDKSRS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred HHHhccCeeccCCCCC----CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 9999999998765433 9999999999999999999999999999999999999754
|
|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=273.89 Aligned_cols=214 Identities=25% Similarity=0.457 Sum_probs=185.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
+..+|++.++|||||||+.|.|+++++.+...+....++++.+....++|..++++++++++.+.. ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 456899999999999999999999998776666777899999999999999999999999987543 3467999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC-CCeEEEEEEEeeccccccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999998888899999988776655 4789999999999999999999975 466666654211
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
...+.|+|+|+|+|||++.
T Consensus 531 -------------------------------------------------------------~~~~~i~v~D~G~G~~~~~ 549 (607)
T PRK11360 531 -------------------------------------------------------------DGQVAVSIEDNGCGIDPEL 549 (607)
T ss_pred -------------------------------------------------------------CCEEEEEEEeCCCCCCHHH
Confidence 0127899999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
++++|+||++.+ .+|+||||++||+++++|||+|+++|.+|+||+|+|++|+..
T Consensus 550 ~~~~f~~~~~~~------~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 550 LKKIFDPFFTTK------AKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred HhhhcCCceeCC------CCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 999999999643 358999999999999999999999999999999999999854
|
|
| >PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=241.32 Aligned_cols=186 Identities=31% Similarity=0.519 Sum_probs=138.8
Q ss_pred CCCCCCHHHHHHHHHH--hhhhCCCceeeeeccccChhhHHHHHHHhCccccc-ccCCCCCCCCcceeeEeeecCC--Cc
Q 001846 108 NPSALDQDTFAEYTTR--TAFERPLLSGVAYAPRVVDAQREQFERQHGMTITT-MKSEPSPIRDEYAPVMFYQEPM--SH 182 (1006)
Q Consensus 108 ~~~~v~~~~f~~~~~~--~~~~~p~i~~~~~~~~v~~~~r~~fe~~~~~~i~~-~~~~p~~~~~~y~pv~~~~~~~--~~ 182 (1006)
+|+.|++++|..|++. ++.++|++++++|+++|.+++|++||+++...+.. ....|.+.+++|+||.|..+.. ..
T Consensus 1 ~s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f~i~~~~~~~~~~pv~yi~P~~~n~~ 80 (193)
T PF03924_consen 1 ASEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDFRIRPDGPRDEYFPVTYIEPLEGNEA 80 (193)
T ss_dssp -S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S--BTTS--SEE-BEEEE-GGG--GG
T ss_pred CCCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccceEeeeCCCCCCceEEEEeecchhHHh
Confidence 4789999999999999 99999999999999999999999999997755332 2222577999999998644333 46
Q ss_pred ccccccCCchhhHHHHHHHHhcCCceeeeceeecCCc--ccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHH
Q 001846 183 VKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH--HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260 (1006)
Q Consensus 183 ~~~~D~~s~~~~r~~i~~Ar~tg~~~lt~p~~l~~~~--~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l 260 (1006)
.+||||+|+|.+|++|.+|++||++++|+|++|++.+ +.|++++.|||..+.++..++++|+.+++||+.++|++++|
T Consensus 81 ~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~v~~~~~l 160 (193)
T PF03924_consen 81 ALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSAVFRVDDL 160 (193)
T ss_dssp GBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEEEEEHHHH
T ss_pred ccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEEEEEHHHH
Confidence 7899999999999999999999999999999999876 58999999999766666678999999999999999999999
Q ss_pred HHHHHhhhccCccEEEEEeccCCCCCcccccCC
Q 001846 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGD 293 (1006)
Q Consensus 261 ~~~ll~~~~~~~~~~v~v~d~~~~~~~~~~y~~ 293 (1006)
++.++........+.+.+||.++..++..+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 161 FESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp HHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred HHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 999998865346788999998887778788864
|
It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A. |
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=281.58 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443 (1006)
Q Consensus 364 ~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~ski 443 (1006)
+..+.++++++++++..+|++|+++||||||||||+|.|+++++.+...++..+.++..+......+..+++.++..
T Consensus 587 DITerK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 663 (807)
T PRK13560 587 DISERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS--- 663 (807)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 44455556666777788899999999999999999999999998876666667666666555555555444444321
Q ss_pred hcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC----CeEE
Q 001846 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER----GHIF 519 (1006)
Q Consensus 444 e~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~----G~I~ 519 (1006)
....++++.++++++...+......++..+.+.++...+.....+...+.|||.||++||+||+.. |.|.
T Consensus 664 ------~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~ 737 (807)
T PRK13560 664 ------EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIK 737 (807)
T ss_pred ------ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEE
Confidence 234578999999999999888777776666666655444444566778999999999999999843 4555
Q ss_pred EEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCC
Q 001846 520 VKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599 (1006)
Q Consensus 520 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1006)
|++...
T Consensus 738 i~~~~~-------------------------------------------------------------------------- 743 (807)
T PRK13560 738 VEIREQ-------------------------------------------------------------------------- 743 (807)
T ss_pred EEEEEc--------------------------------------------------------------------------
Confidence 554311
Q ss_pred CceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 600 ~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
....+.|+|+|||+|||++.. ...|+||||+|||+||+.|||+|+++|. +||||+|++|+..
T Consensus 744 ~~~~v~i~V~D~G~GI~~~~~----------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 744 GDGMVNLCVADDGIGLPAGFD----------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred CCCEEEEEEEeCCCcCCcccc----------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 112578999999999998631 1247899999999999999999999994 7999999999753
|
|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=265.78 Aligned_cols=203 Identities=22% Similarity=0.323 Sum_probs=162.7
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
+..++.+.++||||||++.+..+++...+...+ +.+.++++.+..+.+++.++++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 446788999999999999998888877654333 345678888999999998888776432 2356667899999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDET 538 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~ 538 (1006)
+++++...+... ...+++. ++++ ..+.+|+.+++||+.||++||+||++. |.|.|++...
T Consensus 548 ll~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~------------- 608 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE------------- 608 (679)
T ss_pred HHHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc-------------
Confidence 999998876542 3344444 3333 358999999999999999999999964 6777766421
Q ss_pred ccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChh
Q 001846 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618 (1006)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 618 (1006)
+..+.|+|+|+|+|||++
T Consensus 609 --------------------------------------------------------------~~~~~i~V~D~G~Gi~~~ 626 (679)
T TIGR02916 609 --------------------------------------------------------------CGAARIEIEDSGCGMSPA 626 (679)
T ss_pred --------------------------------------------------------------CCEEEEEEEEcCCCcChH
Confidence 124779999999999999
Q ss_pred H-HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 619 A-QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 619 ~-~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
. ++++|+||++.+. +|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 627 ~i~~~lF~pf~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 627 FIRERLFKPFDTTKG------AGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred HHHHhcCCCCCCCCC------CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9 9999999985432 69999999999999999999999999999999999986
|
Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes. |
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=246.54 Aligned_cols=195 Identities=25% Similarity=0.320 Sum_probs=137.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll 461 (1006)
..++++.+|||+||||++|.|++++... .+..+++..+ .......++++++..+ . .++
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~-----~~~ 396 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK----------S-----PVI 396 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------C-----HHH
Confidence 3467888999999999999999887532 1222333222 1222222333332111 0 112
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCceE-EecHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEeeccccccccccc
Q 001846 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFV-LGDPGRFRQIITNLVGNSVKFTE---RGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 462 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v-~gD~~rl~QIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
...+......++++++.+.+..++.+|... ..+..+|.||+.||++||+||+. .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222233345677899999887765555321 23345899999999999999963 45666555321
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
...+.|+|+|+|+|||+
T Consensus 465 ---------------------------------------------------------------~~~~~i~V~D~G~gi~~ 481 (542)
T PRK11086 465 ---------------------------------------------------------------NGWLHCEVSDDGPGIAP 481 (542)
T ss_pred ---------------------------------------------------------------CCEEEEEEEECCCCCCH
Confidence 12477999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+.++++|+||+.. +.+|+||||+|||++++.|||+|+++|.+++|++|+|++|+..
T Consensus 482 ~~~~~iF~~~~~~------~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 482 DEIDAIFDKGYST------KGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred HHHHHHHhCCCcc------CCCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 9999999999843 2359999999999999999999999999999999999999854
|
|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=231.87 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=152.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecH
Q 001846 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457 (1006)
Q Consensus 379 ~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL 457 (1006)
+..+.++.+.++||+||||++|.+..+++.+...+ ++.++..+.+...+.++.+.++++++..+- ....++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 34566788999999999999999999988654333 345578889999999999999999865441 22346799
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccc
Q 001846 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 458 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988875554444444433322 22456778899999999999999999988877766421
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+..+.++|+|+|+|||+
T Consensus 439 ---------------------------------------------------------------~~~i~l~V~DnG~Gi~~ 455 (495)
T PRK11644 439 ---------------------------------------------------------------DERLMLVIEDDGSGLPP 455 (495)
T ss_pred ---------------------------------------------------------------CCEEEEEEEECCCCCCc
Confidence 12478999999999986
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
+. .|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 456 ~~-------------------~~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 456 GS-------------------GQQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CC-------------------CCCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 41 3689999999999999999999999 789999999984
|
|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=238.38 Aligned_cols=198 Identities=22% Similarity=0.291 Sum_probs=144.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHH
Q 001846 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463 (1006)
Q Consensus 384 ~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~ 463 (1006)
+.+..++||+++||++|.|++++-. ..+..+.+...+..+..+++++...-+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 4567799999999999999877531 234566777777777777777765322 1122222
Q ss_pred HHHHHHHHHHhcCCEEEEEeCCCCC-ceEEecHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEeeccccccccccccc
Q 001846 464 VLSLFSEKSRNKGIELAVFVSDKVP-EFVLGDPGRFRQIITNLVGNSVKFT---ERGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 464 v~~~~~~~a~~k~i~l~~~~~~~~p-~~v~gD~~rl~QIl~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+. .....++++++.+.+.....+. ....+|+..|.||+.||++||+||. +.|...|.+....
T Consensus 399 l~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LF-GKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HH-HHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 22 2235577888988775433321 1246799999999999999999994 3333333333211
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
+...+.|+|+|+|+|||++.
T Consensus 465 ------------------------------------------------------------~~~~~~i~V~D~G~Gi~~~~ 484 (545)
T PRK15053 465 ------------------------------------------------------------EGDDVVIEVADQGCGVPESL 484 (545)
T ss_pred ------------------------------------------------------------CCCEEEEEEEeCCCCcCHHH
Confidence 11247799999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
++++|+|||... ++..+|+||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 485 ~~~iF~~~~~tk---~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 485 RDKIFEQGVSTR---ADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred HHHHhCCCCCCC---CCCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 999999999633 334578999999999999999999999999999999999999753
|
|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=220.62 Aligned_cols=212 Identities=24% Similarity=0.338 Sum_probs=166.9
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhc---CCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeE
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLD---TDLSS---TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~---~~l~~---~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~ 453 (1006)
.|.++-..-++|||||||+-|.-.++-|.. ..+++ .-.++.++|.+....+-+|+++.-+|+|+-+ ++.+
T Consensus 484 ~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e 559 (712)
T COG5000 484 AAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLE 559 (712)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCC
Confidence 345555566999999999999999998853 23333 2356889999999999999999999998644 3445
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC---e---EEEEEEEeec
Q 001846 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG---H---IFVKVHLAER 527 (1006)
Q Consensus 454 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G---~---I~v~v~~~~~ 527 (1006)
+.||++++.+++.++.. ....+.+...+... |.....|+..++|++.||+.||..+-+.- + -.++++.
T Consensus 560 ~~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~--- 633 (712)
T COG5000 560 KSDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL--- 633 (712)
T ss_pred cchHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE---
Confidence 67999999999977643 34567788777666 87888899999999999999999886421 0 0112211
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+..+++.
T Consensus 634 ----------------------------------------------------------------------~~~~g~i~v~ 643 (712)
T COG5000 634 ----------------------------------------------------------------------DDADGRIVVD 643 (712)
T ss_pred ----------------------------------------------------------------------ecCCCeEEEE
Confidence 1123458899
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeC-CCceEEEEEEEc
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP-QVGSTFSFTAVF 677 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~-g~GstF~f~lp~ 677 (1006)
|.|||.|.|.|.+.|+||||+... ..||||||+|||+|+|-|||.|.+...| -.|....+.+|.
T Consensus 644 V~DNGkG~p~e~r~r~~EPYvTtr------~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 644 VIDNGKGFPRENRHRALEPYVTTR------EKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred EecCCCCCChHHhhhhccCceecc------cccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 999999999999999999999432 2599999999999999999999999884 359999988876
|
|
| >COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=199.82 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=110.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+|||||||+.....+...|++.||.|.++.+|++|++.+.. . ||+|++|++||+|||+++|++||+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~iR~~----------- 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRRLRAK----------- 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHHHHhh-----------
Confidence 79999999999999999999999999999999999999986 4 9999999999999999999999963
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
....+|||++||..+.+++..++++||||||+|||++++|...|+.+++..
T Consensus 69 ----------~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 ----------KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ----------cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 123689999999999999999999999999999999999999999998764
|
|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=195.21 Aligned_cols=209 Identities=22% Similarity=0.342 Sum_probs=172.1
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHH---HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 383 SQFLATVSHEIRTPMNGILGMLAL---LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 383 s~Fla~vSHELRTPLn~I~g~~el---L~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
.+=+.++||||..|||++..++-- ..+...+.....++..|..-.+++-.+||.+-.|+|-.+++-.+ .|++|.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 466789999999999999887643 34455566678899999999999999999999999988777555 4689999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC--eEEEEEEEeeccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG--HIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G--~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++.+..++..+.+.+.+.+..-. +. .+|.||..+|+||+.||+-||+..+..- -|.+.+.
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 999999999999999988886533 22 3699999999999999999999987542 3333221
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+.+...+++.|.|+|.|-|-
T Consensus 593 ------------------------------------------------------------~~~~e~l~i~i~DnGqGwp~ 612 (673)
T COG4192 593 ------------------------------------------------------------GTEQEMLRIAIIDNGQGWPH 612 (673)
T ss_pred ------------------------------------------------------------cCcccceEEEEecCCCCCch
Confidence 11233578999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+..+++|+||... +.-|.|||||||..|++.|.|++.+.|...+|.++.+.+.
T Consensus 613 ~l~dkLl~PFtts------K~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~ 665 (673)
T COG4192 613 ELVDKLLTPFTTS------KEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQ 665 (673)
T ss_pred hHHHHhcCCcccc------cccccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEe
Confidence 9999999999632 2358999999999999999999999999999998877653
|
|
| >COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=188.15 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=158.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccccCC-CCCC
Q 001846 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKN-PSAL 112 (1006)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~v 112 (1006)
+.|.|+++++.+ +.+.+.+|-+.+...+. ..+-.|++-+|-++..+++.++...+-+.+ |..+|.+ +++|
T Consensus 11 ~~~~pl~~~i~~-LLltl~~~g~a~~~t~~--~sr~~fe~~A~~~~nal~~rv~~~~~~l~s------t~a~f~s~~~~i 81 (348)
T COG3614 11 RVWVPLLVLIVS-LLLTLTAAGLAYSLTLE--QSRTLFERLADRQTNALQQRVDLDQHLLRS------TRAFFRSSTSDI 81 (348)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHhhccCCC
Confidence 457887776554 33333333333333333 344567888999999999999976666333 3334544 4899
Q ss_pred CHHHHHHHHHHhhhhCCCceeeeeccccChhhHHHHHHHhCcccc------cc----cCCC-CCCCCcceeeEeeecCCC
Q 001846 113 DQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTIT------TM----KSEP-SPIRDEYAPVMFYQEPMS 181 (1006)
Q Consensus 113 ~~~~f~~~~~~~~~~~p~i~~~~~~~~v~~~~r~~fe~~~~~~i~------~~----~~~p-~~~~~~y~pv~~~~~~~~ 181 (1006)
|+.+|+.|+. ++...-.++|+-|-..|...+++.||+.+...+. .. ...| ...+.+||||- |.||+.
T Consensus 82 t~~~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~-~iePl~ 159 (348)
T COG3614 82 TRREFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQ-YIEPLN 159 (348)
T ss_pred cHHHHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeE-eecCCC
Confidence 9999999998 5556677888888888999999999987543321 11 1236 56777788885 677765
Q ss_pred c----ccccccCCchhhHHHHHHHHhcCCceeeeceeecCCc-----ccceEEEeecccCCCCCCCCHHHHHHhhcccee
Q 001846 182 H----VKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH-----HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIG 252 (1006)
Q Consensus 182 ~----~~~~D~~s~~~~r~~i~~Ar~tg~~~lt~p~~l~~~~-----~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~ 252 (1006)
+ .+||||+|||.||+|++.|+++++..+|+|++|+|+. ..|+++|.|||....+....+-+ ..++||++
T Consensus 160 ~~N~~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~gq--~~l~Gfl~ 237 (348)
T COG3614 160 YDNRKALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPGQ--AVLVGFLY 237 (348)
T ss_pred ccchhhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcch--hhhhhhHH
Confidence 4 5689999999999999999999999999999999753 26899999999987655443322 46789999
Q ss_pred cccchhHHHHHH
Q 001846 253 GPFDVESLVENL 264 (1006)
Q Consensus 253 ~~~~v~~l~~~l 264 (1006)
..+...+++..+
T Consensus 238 ~~~~~~~~~qs~ 249 (348)
T COG3614 238 LATRFEKLVQSS 249 (348)
T ss_pred HHHHHhhhhhhc
Confidence 999998877643
|
|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=204.19 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=141.4
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
++.+|++.++||+||||+.|.|+++++.. .....++++.+.....+|..+++++|+.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 44679999999999999999999998862 233456788888899999999999987643 356899999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHhcc---C-CCCeEEEEEEEeeccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD-PGRFRQIITNLVGNSVKF---T-ERGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD-~~rl~QIl~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
+++++..+... +..+.+..+ .+ .+..| ...|.||+.||++||+|| + +.|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998876532 444544322 11 12222 357999999999999999 4 357777765211
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
.+...+.+.|.|+|.|+
T Consensus 300 ---------------------------------------------------------------~~~~~~~i~v~d~G~~~ 316 (361)
T PRK13559 300 ---------------------------------------------------------------PEGAGFRIDWQEQGGPT 316 (361)
T ss_pred ---------------------------------------------------------------CCCCeEEEEEECCCCCC
Confidence 01234789999999997
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHH-hCCEEEEEeeCCCceEEEEEEEcc
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL-MRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~l-mgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
+++ ..|+|+||.||+++++. |||+|++++. +.|++|+|++|..
T Consensus 317 ~~~-------------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 317 PPK-------------------LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred CCC-------------------CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 653 23789999999999997 9999999997 5799999999963
|
|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=171.90 Aligned_cols=109 Identities=33% Similarity=0.618 Sum_probs=97.6
Q ss_pred ecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcc
Q 001846 493 GDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571 (1006)
Q Consensus 493 gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 571 (1006)
||+.+|++|+.||+.||+||++. |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999976 88888775321
Q ss_pred cccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHH
Q 001846 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651 (1006)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~L 651 (1006)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+||||++|+.+
T Consensus 36 ------------------------------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~ 84 (111)
T PF02518_consen 36 ------------------------------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQI 84 (111)
T ss_dssp ------------------------------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHH
T ss_pred ------------------------------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHH
Confidence 2578999999999999999999999999886 334457899999999999
Q ss_pred HHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 652 VELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 652 v~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
++.|+|+|++.|.++.||+|+|++|+
T Consensus 85 ~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 85 AERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp HHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred HHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 99999999999999999999999986
|
The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D .... |
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=199.66 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=140.8
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHH----HhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecH
Q 001846 384 QFLATVSHEIRTPMNGILGMLAL----LLDT--DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457 (1006)
Q Consensus 384 ~Fla~vSHELRTPLn~I~g~~el----L~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL 457 (1006)
+..+.++||+++|++.++.++.. +... ...+...+.+..+......+...+.+++...+ +...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 34466999999999988877654 3221 12334455666666667777777777775433 34457899
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccc
Q 001846 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 458 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
.+.+.+++..+... .++.+.+....+.+....+++.++.|++.||+.||+||++.|.|.+.+...
T Consensus 435 ~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------ 499 (565)
T PRK10935 435 GSALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------ 499 (565)
T ss_pred HHHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------------
Confidence 99999999988754 334444433211112233455679999999999999999988877766421
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+...+.++|.|+|+|||+
T Consensus 500 --------------------------------------------------------------~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 500 --------------------------------------------------------------PDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred --------------------------------------------------------------CCCEEEEEEEECCcCcCC
Confidence 012477999999999996
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+. ..|+||||+||+++++.|||+|+++|.+++||+|+|++|...
T Consensus 518 ~~------------------~~~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 518 LK------------------EPEGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred CC------------------CCCCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 31 237899999999999999999999999999999999999753
|
|
| >PRK09581 pleD response regulator PleD; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=187.64 Aligned_cols=259 Identities=18% Similarity=0.223 Sum_probs=186.0
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++++++.........+...|+.+..+.+..++...+.. ..||++++|...... ..... +...+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~g~~l---~~~i~~~ 71 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--------EQPDIILLDVMMPGM-DGFEV---CRRLKSD 71 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--------cCCCEEEEeCCCCCC-CHHHH---HHHHHcC
Confidence 68999999999999999999999999999999998877643 368999998764321 11112 2222222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccc------cccCCCC---CC-CCCcc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK------RQAGRGV---PN-GSSFH 853 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~------~~~~~~~---~~-~~~~~ 853 (1006)
......| +++++..............| .+.++.||+....+...+......... +...... +. .....
T Consensus 72 ~~~~~~~-ii~~s~~~~~~~~~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (457)
T PRK09581 72 PATTHIP-VVMVTALDDPEDRVRGLEAG-ADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAY 149 (457)
T ss_pred cccCCCC-EEEEECCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccc
Confidence 2212234 45555544444444444444 457999999998887777654421100 0000000 00 00000
Q ss_pred ccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchh
Q 001846 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933 (1006)
Q Consensus 854 ~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~ 933 (1006)
.......+||||||++..+..+..+|.. ++.+..+.++.+|+..+.. +.||+|++|+.||.|||++++++||+...
T Consensus 150 ~~~~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~-~~~d~vi~d~~~p~~~g~~l~~~i~~~~~-- 225 (457)
T PRK09581 150 ANKDEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE-TNYDLVIVSANFENYDPLRLCSQLRSKER-- 225 (457)
T ss_pred cccccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc-CCCCEEEecCCCCCchHhHHHHHHHhccc--
Confidence 1122356899999999999999999965 5778889999999998765 56999999999999999999999996321
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
.+++|||++|++.+.+...+|+++|++||+.||+++++|...+.+..
T Consensus 226 ------------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~ 272 (457)
T PRK09581 226 ------------------TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQI 272 (457)
T ss_pred ------------------cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHH
Confidence 24799999999999999999999999999999999999998887644
|
|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=179.26 Aligned_cols=193 Identities=27% Similarity=0.363 Sum_probs=140.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHH
Q 001846 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464 (1006)
Q Consensus 385 Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v 464 (1006)
-+...+||.+|=|+.|.|++++=.- .+..+|++.+...-+. .++.+.. ++. ...+..+
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~y----d~a~~~I~~~~~~qq~---~~~~l~~-------~i~--------~~~lAg~ 393 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGEY----DDALDYIQQESEEQQE---LIDSLSE-------KIK--------DPVLAGF 393 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHhhhhh---hHHHHHH-------hcc--------cHHHHHH
Confidence 4667899999999999999887421 2334455444433332 2222211 110 1234444
Q ss_pred HHHHHHHHHhcCCEEEEEeCCCCCc-eEEecHHHHHHHHHHHHHHHhccCC----CCeEEEEEEEeeccccccccccccc
Q 001846 465 LSLFSEKSRNKGIELAVFVSDKVPE-FVLGDPGRFRQIITNLVGNSVKFTE----RGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 465 ~~~~~~~a~~k~i~l~~~~~~~~p~-~v~gD~~rl~QIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+--...+|+++|+++.++....+|. .-.-++.-+--|+.||++||+..+. +..|.+.++.
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~--------------- 458 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD--------------- 458 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe---------------
Confidence 4445568999999999987665553 1345889999999999999999874 2345444431
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
+...+.++|+|||+|||++.
T Consensus 459 ------------------------------------------------------------~~~~lvieV~D~G~GI~~~~ 478 (537)
T COG3290 459 ------------------------------------------------------------RGDELVIEVADTGPGIPPEV 478 (537)
T ss_pred ------------------------------------------------------------cCCEEEEEEeCCCCCCChHH
Confidence 22468899999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+++|+.-+..+ +.+|.|.||++||++|+.+||.|+++|+++.||+|++.+|..+
T Consensus 479 ~~~iFe~G~Stk-----~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 479 RDKIFEKGVSTK-----NTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred HHHHHhcCcccc-----CCCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999876322 2478999999999999999999999999999999999999864
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=187.60 Aligned_cols=119 Identities=34% Similarity=0.487 Sum_probs=112.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..|.++..+|+..||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 3799999999999999999999999999999999999999875 69999999999999999999999974
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||+||++.+.++..++++.||-|||.|||++++|...|++.++.+
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999999999998753
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-17 Score=151.93 Aligned_cols=111 Identities=34% Similarity=0.551 Sum_probs=104.6
Q ss_pred EEEecCcHHHHHHHHHHHhhcCC-eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGA-TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
||||||++..+..+...|+..|+ .|.++.++.+|++.+.. +.||+||+|+.||+++|.+++++||+..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~~~~~i~~~~---------- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-HPPDLIIIDLELPDGDGLELLEQIRQIN---------- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-STESEEEEESSSSSSBHHHHHHHHHHHT----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-cCceEEEEEeeecccccccccccccccc----------
Confidence 79999999999999999999999 99999999999999976 5699999999999999999999999742
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 995 (1006)
+++|||++|+..+.....+++++|+++||.||++.++|.++|+
T Consensus 70 ------------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 ------------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ------------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ------------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 3789999999999999999999999999999999999999874
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=186.12 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHH
Q 001846 395 TPMNGILGMLALLL--DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472 (1006)
Q Consensus 395 TPLn~I~g~~elL~--~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a 472 (1006)
.+|..+...+..+. ....++..++.+..+....+.+...+.++|...+. ...+.++.+.+++++..|....
T Consensus 375 ~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~ 447 (569)
T PRK10600 375 QSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF 447 (569)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh
Confidence 34455444444342 23345677788999999999999999999987653 2345788999999988887554
Q ss_pred HhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCcccccCC
Q 001846 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552 (1006)
Q Consensus 473 ~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1006)
++.+.+......+.....++..+.||+.|+++||+||++.+.|.|++...
T Consensus 448 ---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~--------------------------- 497 (569)
T PRK10600 448 ---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN--------------------------- 497 (569)
T ss_pred ---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---------------------------
Confidence 44444443321111112244569999999999999999888877766321
Q ss_pred CCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCC
Q 001846 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632 (1006)
Q Consensus 553 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~ 632 (1006)
...+.++|.|+|+|||++.
T Consensus 498 ------------------------------------------------~~~~~l~V~D~G~Gi~~~~------------- 516 (569)
T PRK10600 498 ------------------------------------------------QNQVKLSVQDNGCGVPENA------------- 516 (569)
T ss_pred ------------------------------------------------CCEEEEEEEECCCCCCccc-------------
Confidence 1247899999999999752
Q ss_pred CCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 633 s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
..|+|+||+||+++++.|||+|.+.|.+++||+|++++|..
T Consensus 517 -----~~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 517 -----ERSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred -----cCCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 13689999999999999999999999999999999999874
|
|
| >COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-17 Score=177.04 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=110.7
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
..+||+|||.+.++..++..|+..||.+..|.||++|++.... +.+|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-cCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 4589999999999999999999999999999999999998876 45999999999999999999999998533
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...++|||.+||.++.++..+|+.+|+++||.||+++.+|...+...++
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999988865554
|
|
| >COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=151.47 Aligned_cols=120 Identities=35% Similarity=0.515 Sum_probs=106.7
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHH-HHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAK-AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~-eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+.+||+|||++.++..+..+|...|+.+.++.+|. +|++.++....||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~-------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR-------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhC--------
Confidence 46899999999999999999999999999999996 999999863249999999999999999999999973
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHH-HHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN-LYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~-L~~~l~~~l~~ 1000 (1006)
...+|+|++|++.......+++++|+++|+.||+...+ |..++.+++..
T Consensus 77 --------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 --------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred --------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23578999999999988888999999999999977666 78888877654
|
|
| >COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=182.20 Aligned_cols=116 Identities=27% Similarity=0.410 Sum_probs=106.3
Q ss_pred eEEEecCcHHHHHHHHHHHh--hcCCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 861 KILVVDDNGVNRMVAAGALK--KFGATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~--~~G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+||||||.+..|+-++.++. ++|+++ ..|.||++|++.++. ..||+||+||.||+|||+++++.||+..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike~~------- 74 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQS------- 74 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhC-------
Confidence 79999999999999999986 678875 589999999999987 5799999999999999999999999743
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
+.+-+|++|++.+-+...+++++|+.|||.||++.++|.++|.++..
T Consensus 75 ---------------p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 75 ---------------PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred ---------------CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999998764
|
|
| >COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=173.08 Aligned_cols=124 Identities=31% Similarity=0.457 Sum_probs=114.7
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
..++||||||+..++..+..+|...|+.|..+.+|++|+..+.+. .||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~-~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL-PPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC-CCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 457999999999999999999999999999999999999999874 7999999999999999999999998543
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccCC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~~ 1002 (1006)
...+|||.+|+..+.+...++++.|++|||+||++..+|...+.+.++...
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 347999999999999999999999999999999999999999988887543
|
|
| >COG4566 TtrR Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=152.32 Aligned_cols=118 Identities=26% Similarity=0.392 Sum_probs=108.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.-|-|||||...|+.+..+|...||+|.|..|+.+.+..... ..+.++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~-~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL-DRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC-CCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 468999999999999999999999999999999999998543 568999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|++.+.....+++++||-|||.|||+.+.|..+|++.+..
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 2368999999999999999999999999999999999999999998763
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=155.13 Aligned_cols=117 Identities=24% Similarity=0.400 Sum_probs=106.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++....+-+.++++. ||+ |-+|.++++|..++.. ..|||||+|+-||+.+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-hCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999976 777 4589999999999986 568999999999999999999999973
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
+.++-||++||-.+.++..+++.+|+-|||.|||..+.|.++|.+|.+.
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~ 120 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQK 120 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHH
Confidence 2356699999999999999999999999999999999999999998764
|
|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-14 Score=171.24 Aligned_cols=146 Identities=17% Similarity=0.279 Sum_probs=110.9
Q ss_pred ecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHhccCC-------------CCeE
Q 001846 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI---ITNLVGNSVKFTE-------------RGHI 518 (1006)
Q Consensus 455 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QI---l~NLl~NAiKfT~-------------~G~I 518 (1006)
+.+..+++..-.+.+..++..|.++.+.+... .+..|+..+.++ |.||+.||++|.- .|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34667777777777777776666665555433 256799999999 6799999999962 2555
Q ss_pred EEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCC
Q 001846 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598 (1006)
Q Consensus 519 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1006)
.|++..
T Consensus 420 ~l~a~~-------------------------------------------------------------------------- 425 (670)
T PRK10547 420 ILSAEH-------------------------------------------------------------------------- 425 (670)
T ss_pred EEEEEE--------------------------------------------------------------------------
Confidence 555431
Q ss_pred CCceEEEEEEEecCCCCChhHH---------------------hhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCC
Q 001846 599 SEDVTLMVCVEDTGIGIPLSAQ---------------------ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657 (1006)
Q Consensus 599 ~~~~~l~i~V~DtG~GI~~e~~---------------------~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG 657 (1006)
....+.|+|+|+|.||+++.+ +.||+|||..... .+...|+|+||+|||++++.|||
T Consensus 426 -~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG 503 (670)
T PRK10547 426 -QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGG 503 (670)
T ss_pred -cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCC
Confidence 113578999999999998654 3699997644322 22346999999999999999999
Q ss_pred EEEEEeeCCCceEEEEEEEccc
Q 001846 658 QISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 658 ~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+|.+.|.+|+||+|++++|+..
T Consensus 504 ~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 504 HVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred EEEEEecCCCcEEEEEEEechh
Confidence 9999999999999999999864
|
|
| >COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-15 Score=155.41 Aligned_cols=118 Identities=28% Similarity=0.351 Sum_probs=106.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcC-CeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFG-ATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G-~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+.-++.+|+..+ ++|. .+.||.+|++.+.. ..||+|+||+.||+|||++++++||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-LKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-cCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 69999999999999999998776 7754 67789999999765 669999999999999999999999953
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.++++|+++|++.+.+...+++++|+++|+.|..++++|.++|+..+...
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 34679999999999999999999999999999999999999999987654
|
|
| >PLN03029 type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=155.76 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=105.6
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCC-------------------CCCcEEEEeCCCCCCCH
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-------------------HCFDACFMDIQMPEMDG 919 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~-------------------~~~DlIlmDi~MP~mdG 919 (1006)
..+||||||+..++..+..+|+..|+.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999988531 13689999999999999
Q ss_pred HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 920 ~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
++++++||+... ...+|||++|+....+...+|+++|+++||.||++..+|...+..++
T Consensus 88 ~e~l~~ir~~~~--------------------~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 88 YDLLKKIKESSS--------------------LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred HHHHHHHHhccc--------------------cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 999999996321 23689999999999999999999999999999999999977766554
|
|
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=151.31 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=104.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||||||++..+..+...|... |+. |..+.++.+|++.+.. ..||+|++|+.||++||+++++.||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-~~pdlvllD~~mp~~~gle~~~~l~~~~------- 76 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQAH------- 76 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhcC-------
Confidence 48999999999999999999864 784 6789999999999876 5699999999999999999999999632
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
.++|||++|+....+...+++++|+++|+.||++.++|..+|+++.
T Consensus 77 ---------------~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 77 ---------------YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred ---------------CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 2478999999999999999999999999999999999999998864
|
|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-14 Score=163.74 Aligned_cols=106 Identities=21% Similarity=0.282 Sum_probs=77.3
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCC--CCCCCCccccHHHHHHHHHHhCCE-EEEEeeCCCce-EEEEEEEcc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSST--SRHYGGTGIGLSISKCLVELMRGQ-ISFVSRPQVGS-TFSFTAVFG 678 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--s~~~gGtGLGLsI~k~Lv~lmgG~-I~v~S~~g~Gs-tF~f~lp~~ 678 (1006)
.+.|+|+|||+||+++.++++|++|++.+... ....||+||||++|+.++++|+|. |++.|.++.|+ .|+|++++.
T Consensus 74 ~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id 153 (535)
T PRK04184 74 HYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKID 153 (535)
T ss_pred EEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEec
Confidence 46799999999999999999999997654322 234578999999999999999997 99999999998 899998876
Q ss_pred ccccchhhhccccCCCCCCCCCCCCeEEEEcCc
Q 001846 679 KCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711 (1006)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~g~r~lvvd~~ 711 (1006)
....... ..... .......+|.++.+..+.
T Consensus 154 ~~kn~g~-i~~~~--~~~~~~~~GT~V~V~l~~ 183 (535)
T PRK04184 154 TKKNEPI-ILERE--EVDWDRWHGTRVELEIEG 183 (535)
T ss_pred ccccCCe-ecccc--ccCCCCCCCEEEEEEECC
Confidence 4321110 00000 001234578888875443
|
|
| >PRK10529 DNA-binding transcriptional activator KdpE; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=147.58 Aligned_cols=116 Identities=27% Similarity=0.377 Sum_probs=107.0
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+++|++++++||+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 79999999999999999999999999999999999988765 569999999999999999999999852
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+....+...+++++|+++|+.||++.++|...+..+++.
T Consensus 71 ------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 ------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887754
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=152.09 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=102.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+|+||||+...-..+..+|++.|..+-.|+...+|++.+.. +.||+||+|+.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-cCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 79999999999999999999999999999999999999986 67999999999999999999999998754
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+|||++|++..-.. ..+..-.+|||.||++++.|.++|.+..+.
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 589999999865443 344445589999999999999999998754
|
|
| >PRK11173 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=149.09 Aligned_cols=117 Identities=22% Similarity=0.326 Sum_probs=107.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 479999999999999999999999999999999999998876 469999999999999999999999852
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+....+....++++|+++|+.||++.++|...+..+++.
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999888887754
|
|
| >PRK10816 DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=145.49 Aligned_cols=117 Identities=33% Similarity=0.501 Sum_probs=108.2
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.|..+.++.+|+..+.. +.||+|++|+.||+++|++++++||+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-HLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999998875 569999999999999999999999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+..+.+....++++|+++|+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2368999999999999999999999999999999999999999988764
|
|
| >PRK09836 DNA-binding transcriptional activator CusR; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=145.13 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=107.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|+..|+.|.++.++.+|++.+.. ..||+|++|+.||+++|+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999988765 469999999999999999999999963
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 1368999999999999999999999999999999999999999988753
|
|
| >PRK10766 DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=143.72 Aligned_cols=117 Identities=30% Similarity=0.390 Sum_probs=107.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
++||+|||++..+..+...|...|+.|..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 479999999999999999999999999999999999998875 469999999999999999999999852
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+..+.....+++++|++||+.||++.++|...+..++..
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999998877643
|
|
| >PRK09468 ompR osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=144.92 Aligned_cols=118 Identities=30% Similarity=0.407 Sum_probs=108.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+|||+||++..+..+...|+..|+.+..+.++.+|++.+.. +.||+|++|+.||.++|+++++.||+.
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 74 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQ---------- 74 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 589999999999999999999999999999999999998875 569999999999999999999999962
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+..++..
T Consensus 75 ------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 ------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred ------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 1368999999999999999999999999999999999999999988764
|
|
| >PRK10161 transcriptional regulator PhoB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=143.43 Aligned_cols=120 Identities=22% Similarity=0.349 Sum_probs=108.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 479999999999999999999999999999999999998875 5699999999999999999999998631
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
....+|||++|+..+.+...+++++|+++|+.||++.++|...+..+++.
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 12368999999999999999999999999999999999999999887754
|
|
| >PRK10701 DNA-binding transcriptional regulator RstA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-13 Score=144.81 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=106.8
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-EQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998876 569999999999999999999999861
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+........+++++|+++|+.||++..+|...+...++.
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 147999999999998899999999999999999999999999887754
|
|
| >PRK13856 two-component response regulator VirG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=145.35 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=104.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+.++.++.+|++.+.. ..||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-ETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998875 569999999999999999999999851
Q ss_pred CCCcCCCcccCCCCCcEEEEecCC-CHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADV-IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~-~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.++|||++|+.. ......+++++|+++|+.||++.++|...++..++.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999854 666778999999999999999999999999887764
|
|
| >PRK10643 DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=141.97 Aligned_cols=117 Identities=31% Similarity=0.464 Sum_probs=107.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|...|+.+.++.++.++++.+.. ..||+|++|+.||+++|+++++.||..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-GHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999998875 569999999999999999999999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+..+...
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 2368999999999999999999999999999999999999999887653
|
|
| >PRK10430 DNA-binding transcriptional activator DcuR; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=145.39 Aligned_cols=115 Identities=18% Similarity=0.341 Sum_probs=101.8
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcC-CCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+||||||++..+..+..+|... |+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.||+.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 7999999999999999999864 6764 478999999988752 3459999999999999999999999863
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.++
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2368999999999999999999999999999999999999999864
|
|
| >TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=141.12 Aligned_cols=120 Identities=28% Similarity=0.428 Sum_probs=108.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+.. +.||+|++|+.||+++|+++++.||...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-cCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 479999999999999999999999999999999999998875 5699999999999999999999998632
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
....+|||++|+........+++++|+++|+.||++.++|...+..++..
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12368999999999999999999999999999999999999999988754
|
PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. |
| >PRK10955 DNA-binding transcriptional regulator CpxR; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-13 Score=141.55 Aligned_cols=115 Identities=28% Similarity=0.447 Sum_probs=105.5
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|+..|+.+.++.++.+|++.+.. .||+|++|+.||+++|+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc--CCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998753 59999999999999999999999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
. .+|||++|+.........++++|+++|+.||++.++|...+..++..
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 1 38999999999999999999999999999999999999999987754
|
|
| >TIGR02875 spore_0_A sporulation transcription factor Spo0A | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=145.51 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=105.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+|||||||+..+..+...|... ++.+ .++.+|.+|++.+.. ..||+|++|+.||+|||++++++||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-QQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 48999999999999999999864 5554 479999999999876 56999999999999999999999996321
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|+........+++++|+++|+.||++.++|...|.+++..
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 1247999999999999999999999999999999999999999988653
|
Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species. |
| >TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=141.25 Aligned_cols=118 Identities=27% Similarity=0.393 Sum_probs=107.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC--CCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE--MDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
++||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||+ ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-RLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-CCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 379999999999999999999999999999999999998876 46999999999998 5899999999863
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+..+++.
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 120 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRR 120 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 1258999999999999999999999999999999999999999887754
|
This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. |
| >PRK10336 DNA-binding transcriptional regulator QseB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-13 Score=139.44 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=106.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|+..|+.+.++.++.+++..+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999998865 569999999999999999999999863
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+.+|||++|+....+....++++|+++|+.||++.++|...+..++.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999999988765
|
|
| >PRK11517 transcriptional regulatory protein YedW; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=138.68 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=106.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+.++.++.+|+..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-DDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 69999999999999999999999999999999999998865 569999999999999999999999852
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 157999999999999999999999999999999999999999987754
|
|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=120.22 Aligned_cols=109 Identities=47% Similarity=0.769 Sum_probs=92.5
Q ss_pred ecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcc
Q 001846 493 GDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571 (1006)
Q Consensus 493 gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 571 (1006)
+|+..|.+++.|++.||+++... +.|.|.+...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~---------------------------------------------- 34 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD---------------------------------------------- 34 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------------
Confidence 58899999999999999999976 6666665421
Q ss_pred cccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHH
Q 001846 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651 (1006)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~L 651 (1006)
...+.+.|.|+|.|++++..+++|.+++.... .....++.|+||++|+.+
T Consensus 35 -----------------------------~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~ 84 (111)
T smart00387 35 -----------------------------GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKL 84 (111)
T ss_pred -----------------------------CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHH
Confidence 12467999999999999999999999987653 233456899999999999
Q ss_pred HHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 652 VELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 652 v~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
++.|+|++.+.+.++.|++|+|.+|+
T Consensus 85 ~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 85 VELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred HHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 99999999999998999999999986
|
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
| >PRK11083 DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=137.07 Aligned_cols=118 Identities=29% Similarity=0.415 Sum_probs=107.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 379999999999999999999999999999999999998865 569999999999999999999999963
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|+.........++++|+++|+.||++.++|...+...+..
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 1368999999999888889999999999999999999999999887654
|
|
| >TIGR01387 cztR_silR_copR heavy metal response regulator | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=136.19 Aligned_cols=116 Identities=26% Similarity=0.413 Sum_probs=106.4
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCC
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~ 941 (1006)
||++||++..+..+...|...|+.+..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-DDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 5899999999999999999999999999999999998876 569999999999999999999999863
Q ss_pred CCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 942 ~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+...+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999887754
|
Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. |
| >PRK10840 transcriptional regulator RcsB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=137.33 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=105.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCC-e-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC---CCHHHHHHHHHhhhchhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGA-T-VECAASAKAALDKLQSPHCFDACFMDIQMPE---MDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~---mdG~e~~~~IR~~e~~~~ 934 (1006)
.+||||||++..+..+..+|+..++ . +..+.++.++++.+.. ..||+||+|+.||+ ++|++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-CCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4799999999999999999988765 3 6789999999998875 46999999999999 5999999999863
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||++|+.........++++|+++|+.||++.++|..+|..+....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 23689999999999999999999999999999999999999999876543
|
|
| >PRK14084 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=139.41 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=99.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhcC-C-eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFG-A-TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G-~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+..+..+|+..+ + .+..+.++++|+..+.. +.||+||+|+.||+|+|+++++.||+..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-~~~dlv~lDi~m~~~~G~~~~~~i~~~~-------- 72 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-NQYDIIFLDINLMDESGIELAAKIQKMK-------- 72 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 69999999999999999999876 3 57789999999998875 5699999999999999999999999632
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...|||++|++.. ...++++.|+++|+.||++.++|.+++.++..
T Consensus 73 --------------~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 73 --------------EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred --------------CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2468999998753 45689999999999999999999999998864
|
|
| >CHL00148 orf27 Ycf27; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-12 Score=137.02 Aligned_cols=117 Identities=30% Similarity=0.438 Sum_probs=107.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||++||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-EQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 489999999999999999999999999999999999998865 569999999999999999999999851
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.++|||++|+....+....++++|+++|+.||++.++|...+..++..
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887653
|
|
| >PRK09958 DNA-binding transcriptional activator EvgA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-12 Score=133.03 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=106.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
+||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 69999999998875 569999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+..|||++|+.........++++|+++|+.||++.++|...+..++..
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2257899999999999999999999999999999999999999988754
|
|
| >COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=123.35 Aligned_cols=115 Identities=23% Similarity=0.313 Sum_probs=106.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
+..||||||....+.+...+++.||.|.+|.+.+||+..++. ..|.-.+.|+.|-+-+|+++++.||+..
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~~--------- 79 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERR--------- 79 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-CCCceEEEEeeecCCCchHHHHHHHhcC---------
Confidence 368999999999999999999999999999999999999986 5689999999999999999999999742
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
....||++|++.+..+..++.+.|+++||.||-+.+.+..++.+-
T Consensus 80 -------------~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 80 -------------ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred -------------CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 357799999999999999999999999999999999999888764
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=152.10 Aligned_cols=118 Identities=34% Similarity=0.510 Sum_probs=108.6
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
..+||||||++..+..+...|+..|+.|.++.++.+|+..+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 3589999999999999999999999999999999999998876 569999999999999999999999863
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 236899999999999999999999999999999999999999988765
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=152.45 Aligned_cols=117 Identities=28% Similarity=0.376 Sum_probs=108.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+..+|+..|+.|.++.++.+|+..+.. ..||+||+|+.||++||++++++||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 479999999999999999999999999999999999999876 569999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999999987764
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=151.77 Aligned_cols=118 Identities=24% Similarity=0.363 Sum_probs=108.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++.++..+...|+..|+.|.++.++.+|+..+.. ..||+||+|+.||+|||++++++|++.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-EKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 589999999999999999999999999999999999998876 569999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|.+.+..
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 2368999999999999999999999999999999999999999987753
|
|
| >PRK10360 DNA-binding transcriptional activator UhpA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=130.33 Aligned_cols=114 Identities=21% Similarity=0.337 Sum_probs=102.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+..+...|+.. |+. +..+.++.+++..+.. +.||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-RGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999754 565 5688999999998875 56999999999999999999998863
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+|||++|.....+....|+++|+++|+.||++.++|..+|.+++..
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999998764
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=150.78 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=103.3
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC-----CCHHHHHHHHHhhhchhhhh
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE-----MDGFEATRRIRQMESKANEQ 936 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-----mdG~e~~~~IR~~e~~~~~~ 936 (1006)
||||||++..+..+...| .||.|.++.++.+|++.+.. ..||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-HEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999988 79999999999999999976 46999999999996 9999999999863
Q ss_pred hccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+++|||++|+..+.+...+++++|++|||.||++.++|...|++.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 236899999999999999999999999999999999999999887664
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=151.32 Aligned_cols=117 Identities=33% Similarity=0.499 Sum_probs=107.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+.. ..||+||+|+.||+++|++++++||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 589999999999999999999999999999999999998875 569999999999999999999999963
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..++|||++|++...+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999999987764
|
|
| >PRK11697 putative two-component response-regulatory protein YehT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.3e-12 Score=135.56 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=97.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCC-e-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGA-T-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+|||+||++..+..+..+|+..|. . +..+.++.+|++.+.. ..||++|+|+.||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-LKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 4578999999998875 469999999999999999999998631
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+||++|++. +...++++.|+++||.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688999875 456789999999999999999999999998864
|
|
| >PRK09935 transcriptional regulator FimZ; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=129.52 Aligned_cols=119 Identities=20% Similarity=0.383 Sum_probs=105.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.||..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-RPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 68899999988865 569999999999999999999999862
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+.+|||++|+....+....++++|+++|+.||++.++|..+|..++...
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 22589999999999899999999999999999999999999998877643
|
|
| >PRK09483 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=131.11 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=106.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+|||+||++..+..+..+|+.. |+.+. .+.++.+++..+.. ..||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 88876 78999999998876 569999999999999999999999863
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||++|..........++..|+++|+.||++.++|..++.+++...
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 23689999999999999999999999999999999999999999887643
|
|
| >PRK12555 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-12 Score=142.76 Aligned_cols=115 Identities=27% Similarity=0.330 Sum_probs=98.4
Q ss_pred eEEEecCcHHHHHHHHHHH-hhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGAL-KKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L-~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+..+..+| +..|+.+. .+.++++|++.+.. ..||+|+||+.||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-QPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-cCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999 46688876 78999999999876 569999999999999999999999862
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCC---------CHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPF---------EEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~---------~~~~L~~~l~~~l~ 999 (1006)
.++|||++|+... .+...+|+++|+++|+.||+ ..++|.+.|+++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 1489999998754 45567899999999999999 56777777776653
|
|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-12 Score=155.06 Aligned_cols=400 Identities=21% Similarity=0.217 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL-LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL-~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~ 447 (1006)
...++++..+..+...++..++|..|+|++++++.+.++ .+..+...+.-.+++...++..+..+++.-.|.++...|.
T Consensus 373 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt 452 (786)
T KOG0519|consen 373 LRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGT 452 (786)
T ss_pred HhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCC
Confidence 344445555666777888888899999999999998855 4455666666677788888888999999999999988887
Q ss_pred ccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhc--cCCCCe-EEEEEEE
Q 001846 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK--FTERGH-IFVKVHL 524 (1006)
Q Consensus 448 ~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiK--fT~~G~-I~v~v~~ 524 (1006)
-..+...+.|..++...+.........+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+ ....+..
T Consensus 453 ~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 532 (786)
T KOG0519|consen 453 GLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLA 532 (786)
T ss_pred cccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEe
Confidence 7888889999999999999998888888888888888888888999999999999999999999 887774 1223322
Q ss_pred eeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEE
Q 001846 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604 (1006)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 604 (1006)
..-. ...+...+. .+.-+. .........+
T Consensus 533 ~~~~-------------------------~~vd~~~~~-------~~~~~~-------------------~~~~~~~~~~ 561 (786)
T KOG0519|consen 533 ELLG-------------------------ISVDVSLSL-------SLAFWF-------------------LDLSLSDLEV 561 (786)
T ss_pred cccC-------------------------ccccccccc-------hhhhhh-------------------cccccccchh
Confidence 1000 000000000 000000 0001111357
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccch
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~ 684 (1006)
.+.+++++.|+....+...|.-|.+....+++..++.+++++.|.+..+.++|.+++.-.. .|..-.-.+-+..+....
T Consensus 562 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~ 640 (786)
T KOG0519|consen 562 CKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSS-DGLPKSPSLCLEACLRVE 640 (786)
T ss_pred eEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhccccccccc-ccCCccHHHHHHhhcccc
Confidence 7899999999999999999998888877777656788999999999999999999875211 111111111111110000
Q ss_pred hhh--cc-cc----CC-CCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCc
Q 001846 685 FED--IK-QS----KS-EDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756 (1006)
Q Consensus 685 ~~~--~~-~~----~~-~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~ 756 (1006)
... .+ .. .. ......++|.++|+||++++.+.+....|+.+|..+..+.+..+|+..++ ....||
T Consensus 641 ~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-------~~~~y~ 713 (786)
T KOG0519|consen 641 LNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-------PPHSYD 713 (786)
T ss_pred ccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-------CCCccc
Confidence 000 00 00 00 11233467999999999999999999999999999999999999998877 246899
Q ss_pred EEEEccCccccCCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 757 ~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++++|..++ ..|+...... ++.... ..++++.++.+..++...++...|+ |.++.||+....+..++++.+
T Consensus 714 ~ifmD~qMP--~mDG~e~~~~--irk~~~--~~~pIvAlTa~~~~~~~~~c~~~Gm-d~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 714 VIFMDLQMP--EMDGYEATRE--IRKKER--WHLPIVALTADADPSTEEECLEVGM-DGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEEcCCc--ccchHHHHHH--HHHhhc--CCCCEEEEecCCcHHHHHHHHHhCC-ceEEcccccHHHHHHHHHHHh
Confidence 999998764 4444322222 222111 3344555666677777777777776 789999999999999988765
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-12 Score=149.33 Aligned_cols=115 Identities=27% Similarity=0.364 Sum_probs=106.0
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCC
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~ 941 (1006)
||||||++..+..+...|+..|+.|..+.++.+|+..+.. ..||+|++|+.||++||++++++||+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-GQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 6899999999999999999999999999999999998875 569999999999999999999999863
Q ss_pred CCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 942 ~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+|||++|+........+++++|+++|+.||++.++|...+.+++.
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999999988764
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PRK10710 DNA-binding transcriptional regulator BaeR; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=130.98 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=106.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||+|||++..+..+...|...|+.+..+.++.+|+..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-TPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 389999999999999999999999999999999999998875 569999999999999999999999851
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||+++..........++++|+++|+.||++.++|...+..++..
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 258999999999888899999999999999999999999999887653
|
|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=143.58 Aligned_cols=73 Identities=25% Similarity=0.412 Sum_probs=60.2
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCC--CCCCCCccccHHHHHHHHHHhCCE-EEEEeeCCCceEEEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSST--SRHYGGTGIGLSISKCLVELMRGQ-ISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--s~~~gGtGLGLsI~k~Lv~lmgG~-I~v~S~~g~GstF~f~lp 676 (1006)
.+.|+|+|+|+||+++.++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..+ |+.|..++.
T Consensus 64 ~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~~~~~~ 139 (488)
T TIGR01052 64 HYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIYVYKMK 139 (488)
T ss_pred eEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceEEEEEE
Confidence 35699999999999999999999998776432 224579999999999999999998 99999886 776633333
|
This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase). |
| >PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-12 Score=108.93 Aligned_cols=66 Identities=41% Similarity=0.684 Sum_probs=62.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhc-CCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLD-TDLSSTQ-RDYAQTAQICGKALIALINEVLDRAKIEAR 446 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~-~~l~~~q-~~~l~~i~~s~~~L~~LIndlLd~skie~g 446 (1006)
+|++|++++||||||||++|.+++++|.+ ...++++ ++++..+..+.++|..+|+++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999998 8888888 999999999999999999999999999987
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A .... |
| >PRK15479 transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=127.48 Aligned_cols=116 Identities=34% Similarity=0.501 Sum_probs=105.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||++||++..+..+...|...|+.+.++.++.++++.+.. ..||+|++|+.||+++|+++++.||..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-EMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999988765 569999999999999999999999863
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..++|||++|.....+...+++++|+++|+.||++.++|...+..++.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 235899999999999999999999999999999999999999988765
|
|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=146.10 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=87.4
Q ss_pred HhcCCEEEEEeCCCCCc-eEEecHHHHHHHHHHHHHHHhccCCCCe----EEEEEEEeeccccccccccccccCCCCCcc
Q 001846 473 RNKGIELAVFVSDKVPE-FVLGDPGRFRQIITNLVGNSVKFTERGH----IFVKVHLAERTMVKTDAKDETLLNGGTEEG 547 (1006)
Q Consensus 473 ~~k~i~l~~~~~~~~p~-~v~gD~~rl~QIl~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (1006)
.++.+.+..++..+.+. .+-.|...|.+++.|||+||++|+..+. |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 45778888777655432 1223577899999999999999997653 4444421
Q ss_pred cccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhcccc
Q 001846 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPF 627 (1006)
Q Consensus 548 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 627 (1006)
....+.|.|+|||+||++++++++|++|
T Consensus 78 ----------------------------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf 105 (795)
T PRK14868 78 ----------------------------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKL 105 (795)
T ss_pred ----------------------------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhh
Confidence 1124679999999999999999999999
Q ss_pred ccCCCC----CCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCC-ceE--EEEEEE
Q 001846 628 MQADSS----TSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV-GST--FSFTAV 676 (1006)
Q Consensus 628 ~q~~~s----~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~-Gst--F~f~lp 676 (1006)
++.+.. .++...|.||||++|...+ .+||.|.+.|..+. +.. |.+.+-
T Consensus 106 ~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 106 LYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred cccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 865421 2233345555555555555 36888999999754 333 455443
|
|
| >PRK09390 fixJ response regulator FixJ; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=124.12 Aligned_cols=118 Identities=31% Similarity=0.420 Sum_probs=106.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+|||+||++..+..+...|...|+.+..+.++.++++.+.. +.||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-CCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 479999999999999999999999999999999999988875 569999999999999999999999862
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....+++.|+++|+.||++.++|...+...+..
T Consensus 73 ------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 73 ------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 2368999999999999999999999999999999999999888876653
|
|
| >PRK00742 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=136.60 Aligned_cols=115 Identities=25% Similarity=0.356 Sum_probs=96.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||||||++.++..+..+|... |+.+. .+.++++|++.+.. ..||+|++|+.||+|||++++++||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-LNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-hCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 88877 89999999998876 569999999999999999999999862
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCCCH---------HHHHHHHHHHh
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPFEE---------ENLYRELAKFF 998 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~---------~~L~~~l~~~l 998 (1006)
. .+|||++|+... .+...+++++|+++|+.||++. ++|...++...
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~ 131 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAA 131 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHh
Confidence 1 289999998643 4566789999999999999953 45555555543
|
|
| >PRK10100 DNA-binding transcriptional regulator CsgD; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=126.72 Aligned_cols=114 Identities=10% Similarity=0.113 Sum_probs=94.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHH-HHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT-RRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~-~~IR~~e~~~~~~~ 937 (1006)
.++++|||+|..+..++.+|+. ++. +..+.++.+|++.+. .||+||||+.||++||++++ +.||..
T Consensus 11 ~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~-------- 78 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK-------- 78 (216)
T ss_pred ceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh--------
Confidence 4799999999999999999984 454 557889999988643 38999999999999999997 567753
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHH--CCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK--CGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~--aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||++|+.... ...++. +|+++|+.|+.+.++|.++|+..+...
T Consensus 79 --------------~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 79 --------------NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred --------------CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 236899999998663 334555 599999999999999999999877654
|
|
| >PRK11475 DNA-binding transcriptional activator BglJ; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-11 Score=125.73 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=89.8
Q ss_pred HHHHHHHHhh---cCCeEEEeCCHHHHHHHhcCCCCCcEEE---EeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcC
Q 001846 872 RMVAAGALKK---FGATVECAASAKAALDKLQSPHCFDACF---MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945 (1006)
Q Consensus 872 ~~~l~~~L~~---~G~~v~~a~~g~eAl~~l~~~~~~DlIl---mDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~ 945 (1006)
|..+..+|+. .|+.|.++.+++++++.+.. ..||+++ +|+.||+|||++++++||+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-ISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-CCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 4567777864 57778899999999998875 4589998 78899999999999999863
Q ss_pred CCcccCCCCCcEEEEecCCCHHhHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 946 GTAKRDELHLPILAMTADVIHATFDECL-KCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 946 ~~~~~~~~~~PIIalTa~~~~~~~~~~~-~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+.+|||++|+.........++ ++|+++||.||++.++|.++|+..+...
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 2368999999987776565655 7999999999999999999999987654
|
|
| >PRK09581 pleD response regulator PleD; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=139.56 Aligned_cols=118 Identities=29% Similarity=0.397 Sum_probs=107.4
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|...|+.+.++.++.+|+..+.. ..||+|++|+.||+++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-EQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 79999999999999999999899999999999999999876 5699999999999999999999998631
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
....+|||++|+....+...+++++|+++|+.||++.++|...+.+...
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 1236899999999999999999999999999999999999998887654
|
|
| >COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=133.73 Aligned_cols=103 Identities=30% Similarity=0.448 Sum_probs=90.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcC--CeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.|||||||.+..|++++.+|...| ..|.++.||.+|+++++. ..||+|.||+.||.|||++++++|-+.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~im~~-------- 72 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKIMRL-------- 72 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-cCCCEEEEecccccccHHHHHHHHhcC--------
Confidence 389999999999999999999998 457799999999999987 679999999999999999999999752
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCCC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPFE 986 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~ 986 (1006)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 ---------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 ---------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ---------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3689999987544 455668999999999999974
|
|
| >PRK13435 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=114.94 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=99.7
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCC-CCCHHHHHHHHHhhhchhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMP-EMDGFEATRRIRQMESKANEQ 936 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~e~~~~~~ 936 (1006)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+.. ..||+|++|+.|+ .++|+++.+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-RQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-cCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999976 78999999988765 4699999999998 59999999998751
Q ss_pred hccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.++|||+++.... ...++.+|+++|+.||++.++|.+.|.+++..+
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 2589999997643 356788999999999999999999999887643
|
|
| >PRK10610 chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=106.63 Aligned_cols=120 Identities=37% Similarity=0.517 Sum_probs=105.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
.+||++||++.....+...|...|+. +.++.++.+++..+.. ..||++++|..+|.++|+++.+.+++..
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-cCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 58999999999999999999999984 7889999999988765 5699999999999999999999998632
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...++|+++++..........+++.|+++|+.||++.++|...+.++++.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 12357999999988888888999999999999999999999999887753
|
|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-11 Score=141.77 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=64.5
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCC--CCCCCCccccHHHHHHHHHHh-CCEEEEEeeCCCceEEEEEEEccc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSST--SRHYGGTGIGLSISKCLVELM-RGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--s~~~gGtGLGLsI~k~Lv~lm-gG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+.|+|.|||+|||++.++++|++|+..+.-. ....|+.|+||+++..+++++ ||.+.+.|.++.|++|++.+|+..
T Consensus 72 ~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 72 HYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred EEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEe
Confidence 46799999999999999999999998644321 134578999999999999886 556999999999999999998854
|
|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=106.25 Aligned_cols=71 Identities=51% Similarity=0.715 Sum_probs=59.6
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~l 675 (1006)
.+.|.|.|+|.|+++..+++.|.+|.. .......++.|+||++|+++++.|||++++.+..+.|++|++++
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 477999999999999999999998821 12223345899999999999999999999999988999998763
|
|
| >COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-11 Score=119.11 Aligned_cols=112 Identities=29% Similarity=0.391 Sum_probs=95.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
.++|++||++.++..+...|...||. |.++.++.++.+.... +.||+||||+.||.-|-.+..... +
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-~~pDvVildie~p~rd~~e~~~~~-~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-LQPDVVILDIEMPRRDIIEALLLA-S---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-cCCCEEEEecCCCCccHHHHHHHh-h----------
Confidence 48999999999999999999999997 5689999999988775 779999999999999933333222 1
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 995 (1006)
.....|||++|++.+++..+.+.++|+.+||.||+++..|+..|.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 123579999999999999999999999999999999999876664
|
|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=145.40 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=102.3
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++.++..+..+|...|+.|..+.++.+|+..+.. ..||+||+|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-GEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-cCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 489999999999999999999999999999999999998875 569999999999999999999999862
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHH--HHHHHHHHHh
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE--NLYRELAKFF 998 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~--~L~~~l~~~l 998 (1006)
.+.+|||++|+..+.+...+++++|+++|+.||.+.. .+...+.+.+
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 2368999999999999999999999999999997643 5556555544
|
|
| >PRK15369 two component system sensor kinase SsrB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=117.01 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=103.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||++||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||.++|+++++.+|+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~~~~~~~~l~~~~------- 75 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-LEPDIVILDLGLPGMNGLDVIPQLHQRW------- 75 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHC-------
Confidence 57999999999999999999876 4664 478999999988765 5699999999999999999999998632
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|+|++|+.........++++|+++|+.||++.++|...+..++..
T Consensus 76 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 76 ---------------PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 257999999999999999999999999999999999999999887654
|
|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=114.04 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=52.3
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~l 675 (1006)
.+.++|.|+|.||| ..+++|+||+..+. ..+|+|+||++++++ .+++.+.+.++.|++|+++.
T Consensus 74 ~~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 74 EVYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTKIIMKK 136 (137)
T ss_pred EEEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeEEEEEe
Confidence 47899999999998 36789999996543 235899999998874 57999999999999999863
|
This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA. |
| >PRK10651 transcriptional regulator NarL; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=118.10 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=104.3
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||+++|+++++.++...
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~l~~~~~~~~~~~l~~~~------- 78 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKS------- 78 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHHhC-------
Confidence 48999999999999999999865 5654 468999999998875 4699999999999999999999998632
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+.|+|++++....+....++++|+++|+.||++.++|...+.+++..
T Consensus 79 ---------------~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 79 ---------------LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 257999999999999999999999999999999999999999988764
|
|
| >PRK10403 transcriptional regulator NarP; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-10 Score=117.43 Aligned_cols=117 Identities=23% Similarity=0.284 Sum_probs=102.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhh-cCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKK-FGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~-~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577765 68999999988765 569999999999999999999999863
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..+.|++++|..........++++|+++|+.||++.++|...+.....
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 225789999998888888899999999999999999999999987654
|
|
| >PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=117.03 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCC---eEEEeCCHHHHHHHhcCCCCCcEEEEeCC--CCCCCHHHHHHHHHhhhchhhh
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGA---TVECAASAKAALDKLQSPHCFDACFMDIQ--MPEMDGFEATRRIRQMESKANE 935 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~---~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~e~~~~IR~~e~~~~~ 935 (1006)
.||||||++..+..++.+|...++ .+..+.++.+++..+.. ..||+||||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-LRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-cCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 45678999999998865 45999999966 8989999999999863
Q ss_pred hhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCE-EEeCCCCHHHHHHHHHHHhccC
Q 001846 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-YVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~-yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+.+|||++|+........ .+..|.+. |+.|+.++++|.++|+......
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 2357999999987765543 55556665 8999999999999999987654
|
|
| >PRK09191 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=119.62 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=98.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCC-CCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPE-MDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||++||++..+..+...|+..|+.+. .+.++.++++.+.. +.||+|++|+.||+ ++|+++++.+++.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-cCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 4799999999999999999999999987 78999999998876 56999999999995 8999999999852
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
. ++|||++|+...... .+...|+++|+.||++.++|...|.++...
T Consensus 209 --------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 1 689999999765443 344567899999999999999999987654
|
|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.5e-10 Score=110.07 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=55.4
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+.++|.|+|.||++ ..++|+||++.+.. .+++|+||+|+++ +.+++.+++.++.|++|+++.++.+
T Consensus 74 ~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 74 ELEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKK 140 (146)
T ss_pred EEEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecc
Confidence 478999999999986 66899999864432 2478999999875 4568999999999999999998765
|
|
| >COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-08 Score=103.91 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=129.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHH-HHHHHHHHhhccccCCCCCC
Q 001846 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNH-VHALTILVSTFHYFKNPSAL 112 (1006)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~v 112 (1006)
..|+|.++.+-|+....+.+|... ..+.+ |-+.....++.-.++.|++.++|. ++.+-.|.+ +.+..++.
T Consensus 16 s~~LPali~~~i~vv~sv~~~~~~--~~~~q----e~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~---~~e~~P~~ 86 (297)
T COG3452 16 SNYLPALIGAVILVVVSVHAWLQL--RRVSQ----ERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGK---HWETEPDM 86 (297)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---heecCCCc
Confidence 357777775554434444444332 22222 223333456677777777776665 566655555 45667789
Q ss_pred CHHHHHHHHHHhhhhCCCceeeeeccccChhhHHHHHHHhCcccccccCCCCCCCCcceeeEeeecCCCcccccccCCch
Q 001846 113 DQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGE 192 (1006)
Q Consensus 113 ~~~~f~~~~~~~~~~~p~i~~~~~~~~v~~~~r~~fe~~~~~~i~~~~~~p~~~~~~y~pv~~~~~~~~~~~~~D~~s~~ 192 (1006)
.|+.|+.-+......+.+.+.++=+|.. .+ --.|..+..+.++|+||..+|
T Consensus 87 ~Q~qw~~lA~a~~e~~~~lr~I~vaP~~--------------VV---------------~~~yPl~~neaa~gLDYrk~p 137 (297)
T COG3452 87 PQQQWELLARAVFEDYDGLRNIAVAPSL--------------VV---------------ARVYPLPGNEAAIGLDYRKNP 137 (297)
T ss_pred hHHHhHHHHHHHhhccccceeeccCccc--------------EE---------------EEEeecCCChhhcCcchhcCH
Confidence 9999999888777777888877733321 11 112344555667899999999
Q ss_pred hhHHHHHHHHhcCCceeeeceeecCCcccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHHHHHHH
Q 001846 193 EDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLL 265 (1006)
Q Consensus 193 ~~r~~i~~Ar~tg~~~lt~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll 265 (1006)
.-|.++.+||+.++.++|+|+.|+|+++ |++.++|++-.. |.+ ..++|+|.++||++.|.+...
T Consensus 138 qQ~~s~~~A~~~k~tvvsGpVDL~QGgR-gfi~rvPlf~gp-~~~-------dRFwGvVs~V~dvDqL~~s~~ 201 (297)
T COG3452 138 QQRQSTSRARRQKETVVSGPVDLVQGGR-GFIGRVPLFMGP-PGG-------DRFWGVVSGVFDVDQLYESVS 201 (297)
T ss_pred HHHHHHHHHHhhcceEEecceeeccCCc-eEEEEEeeeeCC-CCC-------CccceEEEEEEEHHHHHHHhc
Confidence 9999999999999999999999999876 999999999753 221 346899999999999988873
|
|
| >PRK10693 response regulator of RpoS; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-10 Score=123.32 Aligned_cols=89 Identities=25% Similarity=0.348 Sum_probs=79.4
Q ss_pred EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHH
Q 001846 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967 (1006)
Q Consensus 888 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~ 967 (1006)
.+.++.+|++.+.. ..||+|++|+.||+|||++++++||+. ...+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~~-~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLGG-FTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 57899999999876 569999999999999999999999863 2358999999999999
Q ss_pred hHHHHHHCCCCEEEeCCC-CHHHHHHHHHHHhc
Q 001846 968 TFDECLKCGMDGYVSKPF-EEENLYRELAKFFK 999 (1006)
Q Consensus 968 ~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~l~ 999 (1006)
...+++++|++||+.||+ +.++|.+.+.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999988887664
|
|
| >cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-09 Score=94.64 Aligned_cols=112 Identities=37% Similarity=0.501 Sum_probs=99.9
Q ss_pred EEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCC
Q 001846 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942 (1006)
Q Consensus 863 LvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~ 942 (1006)
|++|+++..+..+...|...|+.+.++.++.+++..+.. +.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-CCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 578999999999999999999999999999999998875 569999999999999999999999863
Q ss_pred CcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 943 ~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
...+|+++++..........++..|+++|+.||++.++|.+.+.++
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2257999999887788888999999999999999999999988764
|
|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-08 Score=123.13 Aligned_cols=76 Identities=28% Similarity=0.478 Sum_probs=63.5
Q ss_pred eEEEEEEEecCCCCChhH------------------------Hhhhccccc-cCCCCCCCCCCCccccHHHHHHHHHHhC
Q 001846 602 VTLMVCVEDTGIGIPLSA------------------------QERVFMPFM-QADSSTSRHYGGTGIGLSISKCLVELMR 656 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~------------------------~~~iF~pF~-q~~~s~s~~~gGtGLGLsI~k~Lv~lmg 656 (1006)
..+.|+|+|.|.||+.+. ..-||.|-| .++.- ..-.|-|.||=+||+-|+.+|
T Consensus 475 n~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~V--tdvSGRGVGMDVVk~~I~~Lg 552 (716)
T COG0643 475 NNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQV--TDVSGRGVGMDVVKTNIEQLG 552 (716)
T ss_pred CeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhh--hcccCCccCHHHHHHHHHHcC
Confidence 468899999999999654 456899955 33322 245699999999999999999
Q ss_pred CEEEEEeeCCCceEEEEEEEccc
Q 001846 657 GQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 657 G~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|+|.++|++|+||+|++.||++.
T Consensus 553 G~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 553 GSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred CEEEEEecCCCCeEEEEecCcHH
Confidence 99999999999999999999864
|
|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-07 Score=105.43 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+.+.+..........-++..........+..-..-..-+-+|+.-.++||+||+..-++.|++...
T Consensus 242 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~-------------- 307 (365)
T COG4585 242 LVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT-------------- 307 (365)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc--------------
Confidence 344444444444455566665554421111112346789999999999999999988888877532
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
+..+.++|.|+|+|.+++.
T Consensus 308 -------------------------------------------------------------~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 308 -------------------------------------------------------------DDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred -------------------------------------------------------------CCEEEEEEEECCcCCCccc
Confidence 1248899999999998543
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
. +.|+||.=-|+=|+.+||++.+.|.+|+||++++++|+
T Consensus 327 ~-------------------~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 327 E-------------------GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred c-------------------CCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 1 26799999999999999999999999999999999984
|
|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-07 Score=98.61 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=131.3
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
.|..++.-+.|-++|=|+.|..++.+-.....++ ..+++...+.-... +.++-+.|..+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4567888899999999999999988776544443 22333322222222 23344444332 1345678888
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHhccC----CCCeEEEEEEEeeccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD-PGRFRQIITNLVGNSVKFT----ERGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD-~~rl~QIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
++.+...+.+....+.+.+.....+.+ .+--| ..-|--|+.-|++||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 888887777655556677776655432 12222 3458889999999999996 35777776654211
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
.....+.|+|+|.|+
T Consensus 157 -----------------------------------------------------------------~~~~~l~v~deg~G~ 171 (221)
T COG3920 157 -----------------------------------------------------------------GGRFLLTVWDEGGGP 171 (221)
T ss_pred -----------------------------------------------------------------CCeEEEEEEECCCCC
Confidence 003568899999999
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHH-HHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV-ELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv-~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|.+. ++ ...|+|+.+++.+| ++.||.+...+.. |++|++++|...
T Consensus 172 ~~~~------~~-----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 172 PVEA------PL-----------SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred CCCC------CC-----------CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 8642 00 24689999999999 8999999988754 999999998754
|
|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-06 Score=95.67 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=131.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll 461 (1006)
+.+...-+=.||-.-+++|.--..+++.-..++..+...+.|+.-+-++-.-+..+|..-|- -......+.+.+
T Consensus 303 Rk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~qai 376 (497)
T COG3851 303 RKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQAI 376 (497)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC------cccccccHHHHH
Confidence 34444455567788889998877777665555555556666666555555555555543321 112345677888
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHHhccCCCCeEEEEEEEeecccccccccccc
Q 001846 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP---GRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538 (1006)
Q Consensus 462 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~---~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~ 538 (1006)
..++..+. ..++||...++...+. ..-|+ .-+.++...+++|-+|+.+...|.+..+..
T Consensus 377 ~~l~~Em~--~~ergihcq~~~~~n~---~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~------------- 438 (497)
T COG3851 377 RSLLREME--LEERGIHCQLDWRINE---TALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQ------------- 438 (497)
T ss_pred HHHHHHhh--hhhcCeEEEeccccCc---ccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeC-------------
Confidence 88888765 4577887766543211 11122 347889999999999999998888877642
Q ss_pred ccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChh
Q 001846 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618 (1006)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 618 (1006)
+..+.++|+|+|+|+|+.
T Consensus 439 --------------------------------------------------------------~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 439 --------------------------------------------------------------DERLMLEIEDDGSGLPPG 456 (497)
T ss_pred --------------------------------------------------------------CcEEEEEEecCCcCCCCC
Confidence 224789999999999853
Q ss_pred HHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 619 AQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 619 ~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
. +-+|.||.=.++=|..+||+++++| ..||...+++|
T Consensus 457 ~-------------------~v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 457 S-------------------GVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred C-------------------CccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 1 3578999999999999999999999 67999999987
|
|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-07 Score=101.57 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=126.8
Q ss_pred HHhHhhhhhhHHHHHHHHHH----Hh---cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 387 ATVSHEIRTPMNGILGMLAL----LL---DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 387 a~vSHELRTPLn~I~g~~el----L~---~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
++|+.||---|.=.+.++.+ |. ..+..++.++.+..++...+.--.-+.++|.--|+ ....-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 45666776666666655543 32 22333444555555555555444555666654443 233447888
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHHhccCCCCeEEEEEEEeecccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP---GRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKD 536 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~---~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 536 (1006)
-++++++.|+. +-|+.+.++.. .|... -|+ ..+-||+.-=++||+||+..-+|.|+++...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 88888887764 45677666543 33221 233 4577999999999999999888888876321
Q ss_pred ccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCC
Q 001846 537 ETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIP 616 (1006)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~ 616 (1006)
..+.+.|+|+|+|||
T Consensus 511 -----------------------------------------------------------------g~~~~~VeDnG~Gi~ 525 (574)
T COG3850 511 -----------------------------------------------------------------GQVTLTVEDNGVGID 525 (574)
T ss_pred -----------------------------------------------------------------CeEEEEEeeCCcCCC
Confidence 246799999999999
Q ss_pred hhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 617 ~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+.. +.+| --||.|.+.=++.+||.+.|++.+|+||++.+++|
T Consensus 526 ~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 526 EAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred Ccc-----------------CCCC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 641 1124 57999999999999999999999999999999986
|
|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-08 Score=98.67 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=54.9
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+.|.|+|+|+||+++.....|.||+...+... ..+.|+||.++++|++. +.+.+ ..|++|+++-.+..
T Consensus 77 ~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~--~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~~ 145 (161)
T PRK04069 77 RLEIVVADNGVSFDYETLKSKLGPYDISKPIED--LREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYINR 145 (161)
T ss_pred EEEEEEEECCcCCChHHhccccCCCCCCCcccc--cCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcCc
Confidence 588999999999999999999999886554332 23679999999999986 66665 46899998876644
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=121.32 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=85.1
Q ss_pred eEEEecCcHH--------HHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHH----HHHHHHHh
Q 001846 861 KILVVDDNGV--------NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF----EATRRIRQ 928 (1006)
Q Consensus 861 ~ILvVDDn~~--------n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~----e~~~~IR~ 928 (1006)
+||||||+.. .++.+...|+..||+|..+.|+++|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 68999999999999999999999999999653469999999999999998 89999996
Q ss_pred hhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCCCHHH
Q 001846 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPFEEEN 989 (1006)
Q Consensus 929 ~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~~~ 989 (1006)
. ...+|||++|+... ...-.+.++ -+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 2 23699999999886 333333332 35777777655444
|
|
| >COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-08 Score=105.37 Aligned_cols=113 Identities=30% Similarity=0.394 Sum_probs=94.2
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+|+++||++..+..+..++... +++ +..+.++.++++.++.. .+|++|+|++||+|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL-RPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc-CCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 6999999999999999999832 222 33689999999999874 799999999999999999999999742
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
+..+|+++|++... ...+++..+-|||.||++.+.|...+.+..
T Consensus 74 --------------~~~~Ivfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~ 117 (244)
T COG3279 74 --------------PRPAIVFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLR 117 (244)
T ss_pred --------------CCCeEEEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHH
Confidence 24689999997544 445667788999999999999999998643
|
|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-05 Score=95.76 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=55.1
Q ss_pred eEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCC-ccccHHHHHHHHHHhCCE--EEEEeeCCCceEEEEEEEcc
Q 001846 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGG-TGIGLSISKCLVELMRGQ--ISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gG-tGLGLsI~k~Lv~lmgG~--I~v~S~~g~GstF~f~lp~~ 678 (1006)
..+.++|.|||+||+++....+.+.- ++ .|+||+=+++.++++-|. +.++|++++|++.++.+|..
T Consensus 385 ~~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 385 DVIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred CEEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 36889999999999998877664431 12 599999999999999988 58999999999999998854
|
|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-05 Score=90.24 Aligned_cols=131 Identities=24% Similarity=0.349 Sum_probs=93.1
Q ss_pred eEeecHHHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccC-----CCCeEEEEEEE
Q 001846 452 AVLFNLRAILDDVLSLFSEKSRNK--GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-----ERGHIFVKVHL 524 (1006)
Q Consensus 452 ~~~~dL~~ll~~v~~~~~~~a~~k--~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT-----~~G~I~v~v~~ 524 (1006)
...++|.+-++.+-..++-+-..- .+++.+++++.+-. + .=|. -++.=|+.|||||. +.|.|.|+|..
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~-~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-V-QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-c-cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 345788999988877765432222 24444444433211 0 1122 25667899999996 34788888754
Q ss_pred eeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEE
Q 001846 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604 (1006)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 604 (1006)
.+ ..+
T Consensus 489 ~d---------------------------------------------------------------------------~~l 493 (557)
T COG3275 489 ED---------------------------------------------------------------------------ADL 493 (557)
T ss_pred eC---------------------------------------------------------------------------CeE
Confidence 22 247
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCC---EEEEEeeCCCceEEEEEEEcccc
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG---QISFVSRPQVGSTFSFTAVFGKC 680 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG---~I~v~S~~g~GstF~f~lp~~~~ 680 (1006)
++.|+|||-||+++ ...|+|+||+.+++=++++=| -+.+.|.+..||+++|.+|+...
T Consensus 494 ~i~VeDng~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~ 554 (557)
T COG3275 494 RIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRT 554 (557)
T ss_pred EEEEecCCCCcCCC------------------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCccc
Confidence 89999999999886 124899999999999888888 78999999999999999998653
|
|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.6e-07 Score=90.74 Aligned_cols=68 Identities=18% Similarity=0.351 Sum_probs=52.5
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
.+.+.|+|+|.|++++.....|.|+...++.. ...+.|+||.|+++|++ ++.+.+ +.|++++++..+.
T Consensus 77 ~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~~ 144 (159)
T TIGR01924 77 RLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYLN 144 (159)
T ss_pred EEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEEc
Confidence 47899999999999999888898876544332 23466999999999998 677776 4578888775544
|
This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV. |
| >smart00388 HisKA His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=76.91 Aligned_cols=64 Identities=50% Similarity=0.767 Sum_probs=57.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~ 445 (1006)
+.+|++.++|||||||++|.++++.+.+...++....+++.+..+.+.+..++++++++++.++
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999999999999999887666666688999999999999999999999999775
|
Dimerisation and phosphoacceptor domain of histidine kinases. |
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00012 Score=79.16 Aligned_cols=184 Identities=17% Similarity=0.223 Sum_probs=120.7
Q ss_pred hhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeE---eecHHHHHHHHHHHHH
Q 001846 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV---LFNLRAILDDVLSLFS 469 (1006)
Q Consensus 393 LRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~---~~dL~~ll~~v~~~~~ 469 (1006)
|..-|-++.-.++++...-.++.+ -....+..+..+|..-|+++-.+|. . |.+. ..-|..-++-+++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH----~--LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH----D--LRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc----c--cChhhhhhhhHHHHHHHHHHHhh
Confidence 444556666677776543222222 2225567777888888888866653 1 2221 1223444555555554
Q ss_pred HHHHhcCCEEEEEeCCCCCceEE-ecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCccc
Q 001846 470 EKSRNKGIELAVFVSDKVPEFVL-GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548 (1006)
Q Consensus 470 ~~a~~k~i~l~~~~~~~~p~~v~-gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (1006)
++.|+++.+..+. .|..+. --...|.+|...-++|-=|++..-.|.|....
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~------------------------ 386 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQ------------------------ 386 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecc------------------------
Confidence 6789998887643 233222 22457889999999998888855445444321
Q ss_pred ccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccc
Q 001846 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628 (1006)
Q Consensus 549 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 628 (1006)
....+.+.|.|+|+|++.+...
T Consensus 387 ---------------------------------------------------~~d~vql~vrDnG~GF~~~~~~------- 408 (459)
T COG4564 387 ---------------------------------------------------MGDMVQLMVRDNGVGFSVKEAL------- 408 (459)
T ss_pred ---------------------------------------------------CCcceEEEEecCCCCccchhhc-------
Confidence 1235789999999999865321
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 629 q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
..-.||||-=.++=+...||++.++|.|. ||..++.+|...
T Consensus 409 ---------~~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~ 449 (459)
T COG4564 409 ---------QKRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDA 449 (459)
T ss_pred ---------cCccccccccHHHHHHHhCceEEEEecCC-CcEEEEEecchh
Confidence 11269999999999999999999999987 999999998753
|
|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-05 Score=86.18 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------ceeEeecHHHHHHHHHHHHHHHHHhcCC---EEEEEeCCCC
Q 001846 417 RDYAQTAQICGKALIALINEVLDRAKIEARKLE------LEAVLFNLRAILDDVLSLFSEKSRNKGI---ELAVFVSDKV 487 (1006)
Q Consensus 417 ~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~------l~~~~~dL~~ll~~v~~~~~~~a~~k~i---~l~~~~~~~~ 487 (1006)
+.+++....+--.+.-|+|+=+-+-- +|+-+ .-...+++.+++.++.+..+..+..+=+ ++.+.-+...
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 44556555554444456666443332 34332 1123578999999998877766665432 3333322222
Q ss_pred CceEEecHHHHHHHHHHHHHHHhccCC-----CCe----EEEEEEEeeccccccccccccccCCCCCcccccCCCCcccc
Q 001846 488 PEFVLGDPGRFRQIITNLVGNSVKFTE-----RGH----IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNT 558 (1006)
Q Consensus 488 p~~v~gD~~rl~QIl~NLl~NAiKfT~-----~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1006)
... ..=|..|..++.-|+.||+++|- +|. |.|.|-.
T Consensus 252 ~~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~---------------------------------- 296 (414)
T KOG0787|consen 252 SFT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK---------------------------------- 296 (414)
T ss_pred cCc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec----------------------------------
Confidence 211 13488999999999999999982 232 4443321
Q ss_pred ccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCC----
Q 001846 559 LSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSST---- 634 (1006)
Q Consensus 559 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~---- 634 (1006)
++..+.|.|+|-|=||+.+..+++|.--|...+..
T Consensus 297 -----------------------------------------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~ 335 (414)
T KOG0787|consen 297 -----------------------------------------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN 335 (414)
T ss_pred -----------------------------------------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC
Confidence 11236688999999999999999998655332211
Q ss_pred --CCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 635 --SRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 635 --s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
...-.|.|-||.|||-..+..||.+.+.|-.|-||-..+.+-
T Consensus 336 ~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk 379 (414)
T KOG0787|consen 336 NRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLK 379 (414)
T ss_pred CCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEec
Confidence 223359999999999999999999999999999999998874
|
|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.6e-06 Score=76.24 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=43.7
Q ss_pred eEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
..+.|.|+++-.+ +. ++++ +++...++.|+||.+++++++.++|.+.++++.+ .|++++.+
T Consensus 39 ~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f~~~i~i 99 (100)
T PF14501_consen 39 GFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IFTVKIVI 99 (100)
T ss_pred CEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EEEEEEEE
Confidence 3577888888544 11 2222 2233456899999999999999999999987754 77777654
|
|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-06 Score=106.20 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=99.4
Q ss_pred ccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhh
Q 001846 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE 935 (1006)
Q Consensus 856 ~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~ 935 (1006)
.+.+++||++||++.++..+..+|...|+.+..+.++.+ +.. ..||++++|+.||.+++.+.+........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~-~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE-AHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc-CCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 456789999999999999999999999999999999998 233 46999999999999888776655554211
Q ss_pred hhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
....|+|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888999999999999999999999999999999999987654
|
|
| >COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-06 Score=98.19 Aligned_cols=92 Identities=29% Similarity=0.406 Sum_probs=81.1
Q ss_pred CeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecC
Q 001846 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963 (1006)
Q Consensus 884 ~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~ 963 (1006)
++|..+..|.+|+..+.. +.+|.+++|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~~-~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILLD-HKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHhc-CCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 466679999999999876 7799999999999999999999998732 238999999
Q ss_pred CCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 964 ~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+...+.+++|++++++||++...+......+...
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 9999999999999999999999999999887776543
|
|
| >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=66.17 Aligned_cols=62 Identities=44% Similarity=0.674 Sum_probs=53.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDL-SSTQRDYAQTAQICGKALIALINEVLDRAK 442 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~sk 442 (1006)
.+.++++.++|||||||++|.++++.+.+... .+....++..+..+.+++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999999876432 456678889999999999999999998874
|
They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes. |
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.2e-05 Score=85.64 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=46.6
Q ss_pred EEEEEEecCCCCChhHHhhhccccccCCCCC------CCCCCCccccHHHHHHHHHHhCCEEEEEeeC--CCceEEEEE
Q 001846 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSST------SRHYGGTGIGLSISKCLVELMRGQISFVSRP--QVGSTFSFT 674 (1006)
Q Consensus 604 l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~--g~GstF~f~ 674 (1006)
..|+|.|+|.||++++++++|++|+..+... ...+|--|.||+-...+ +++.+.|.. +.+..+.+.
T Consensus 52 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 52 KLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred EEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 3589999999999999999999999765432 12345567888644333 378999985 444444443
|
All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=79.74 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=75.1
Q ss_pred eEEEEEEEecCCCCChhHHhhhccccccCCCC-C-CCCCCCccccHHHHHHHHHHhCCE-EEEEeeCCC-ceEEEEEEEc
Q 001846 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSS-T-SRHYGGTGIGLSISKCLVELMRGQ-ISFVSRPQV-GSTFSFTAVF 677 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s-~-s~~~gGtGLGLsI~k~Lv~lmgG~-I~v~S~~g~-GstF~f~lp~ 677 (1006)
.+..+.|+|||+|||+++..++|-.+.-.+.- . ...-|--|||.+-|--..++.-|+ +.|.|..+. ++...+.+-.
T Consensus 71 d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~i 150 (538)
T COG1389 71 DHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKI 150 (538)
T ss_pred ceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEe
Confidence 35779999999999999999999886543322 1 112245789999999999999886 777776654 6766666654
Q ss_pred cccccchhhhccccCCCCCCCCCCCCeEEE-EcCchhHH--HHHHHHHHHc
Q 001846 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVV-VDEKPVRA--AVTQYHLNRL 725 (1006)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~g~r~lv-vd~~~~~~--~~~~~~l~~~ 725 (1006)
....... .+.......-+...+|.++-+ ++++..++ .-...+|++.
T Consensus 151 d~~kNEp--~Iv~r~~~~~~~~~hGT~Vel~~~~~~~~~~~qgi~eYlkrt 199 (538)
T COG1389 151 DVQKNEP--EIVERGEVENPGGWHGTRVELELKGVWYRAKRQGIYEYLKRT 199 (538)
T ss_pred cCCCCcc--hhhhcccccCCCCCCceEEEEEecccchhhcccCHHHHHHHH
Confidence 4322211 111112223344568888755 45543332 2134455543
|
|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0005 Score=66.50 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=42.1
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~ 674 (1006)
.+.|+|.|+|.|+++.....--..=. ......|+||.|++++++.+ .+ + .+.|++++++
T Consensus 66 ~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 66 RLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred EEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 58899999999998875443221100 12346799999999999875 45 3 7789998874
|
|
| >smart00448 REC cheY-homologous receiver domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0046 Score=47.20 Aligned_cols=54 Identities=35% Similarity=0.485 Sum_probs=48.4
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP 915 (1006)
++++++|++..+..+...+...|+.+..+.++.++...+.. +.||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-EKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-cCCCEEEEeccCC
Confidence 68999999999999999999999999999999999988765 4699999998765
|
CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. |
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=54.13 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=80.9
Q ss_pred EEEEcCchhHHHHHHHHHHHcCC-EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGI-MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~-~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
++++|+++..+...+..++..|+ .+..+++..++...+.. ..||++++|..... .....+...+ +..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--------~~~d~iiid~~~~~-~~~~~~~~~i---~~~ 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--------HPPDLIIIDLELPD-GDGLELLEQI---RQI 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--------STESEEEEESSSSS-SBHHHHHHHH---HHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--------cCceEEEEEeeecc-cccccccccc---ccc
Confidence 58999999999999999999999 99999999999988765 46999999976543 1122222222 222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHH
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l 830 (1006)
. ..+++++++..............|. +.++.||+....+.+.+
T Consensus 69 ~---~~~~ii~~t~~~~~~~~~~~~~~g~-~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 69 N---PSIPIIVVTDEDDSDEVQEALRAGA-DDYLSKPFSPEELRAAI 111 (112)
T ss_dssp T---TTSEEEEEESSTSHHHHHHHHHTTE-SEEEESSSSHHHHHHHH
T ss_pred c---ccccEEEecCCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHhh
Confidence 2 3456666666666666666666654 57999999999887765
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=58.14 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=63.5
Q ss_pred ecHHHHHHHHHHHHHHHhccCCC-----CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccC
Q 001846 493 GDPGRFRQIITNLVGNSVKFTER-----GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADG 567 (1006)
Q Consensus 493 gD~~rl~QIl~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 567 (1006)
-|-.+++-++.-++.||++|..+ |.|.|.++..+
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~----------------------------------------- 74 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD----------------------------------------- 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC-----------------------------------------
Confidence 36789999999999999999866 77877775422
Q ss_pred CCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHH
Q 001846 568 RNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647 (1006)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI 647 (1006)
..+.+.|.|.|+||. ..++.+.|-+.. ...-..-|+||.+
T Consensus 75 ----------------------------------~~~~i~i~D~G~~~~--~~~~~~~~~~~~----~~~~~~~G~Gl~l 114 (146)
T COG2172 75 ----------------------------------GKLEIRIWDQGPGIE--DLEESLGPGDTT----AEGLQEGGLGLFL 114 (146)
T ss_pred ----------------------------------CeEEEEEEeCCCCCC--CHHHhcCCCCCC----CcccccccccHHH
Confidence 247899999998875 445566665211 1111133899999
Q ss_pred HHHHHHHhCCEEEEEeeCCC
Q 001846 648 SKCLVELMRGQISFVSRPQV 667 (1006)
Q Consensus 648 ~k~Lv~lmgG~I~v~S~~g~ 667 (1006)
.++++ .++.+.+.++.
T Consensus 115 ~~~~~----D~~~~~~~~~~ 130 (146)
T COG2172 115 AKRLM----DEFSYERSEDG 130 (146)
T ss_pred Hhhhh----eeEEEEeccCC
Confidence 99977 46788855555
|
|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0091 Score=73.63 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=38.9
Q ss_pred EEEEEEecCCCCChhHHhhhccccccCCCCCC------CCCCCccccHHHHHHHHHHhCCEEEEEeeC
Q 001846 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTS------RHYGGTGIGLSISKCLVELMRGQISFVSRP 665 (1006)
Q Consensus 604 l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s------~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~ 665 (1006)
..|+|.|+|.||++++++.+|.++....-.+. ..+|=-|.||+-...+ +++.+.|..
T Consensus 52 ~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 52 KLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 45999999999999999999999875543221 1234356666544443 367777765
|
|
| >COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.036 Score=59.79 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=81.9
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
+++++||+++........+|+..|+.|..+.+..++...... . ||++++|-.++ +.++- .....++.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--------~-~dlviLD~~lP--~~dG~--~~~~~iR~ 67 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--------Q-PDLVLLDLMLP--DLDGL--ELCRRLRA 67 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------C-CCEEEEECCCC--CCCHH--HHHHHHHh
Confidence 478999999999999999999999999999999998877543 4 99999987654 22221 12223332
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~ 837 (1006)
. .. ..+++++++...+..+.-..-..| +|.++.||+....|.+.++..+...
T Consensus 68 ~-~~-~~~PIi~Lta~~~~~d~v~gl~~G-ADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 68 K-KG-SGPPIIVLTARDDEEDRVLGLEAG-ADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred h-cC-CCCcEEEEECCCcHHHHHHHHhCc-CCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 2 11 234444444433333333333333 4889999999999999998887543
|
|
| >PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=54.01 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=73.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEE-EEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC-FMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlI-lmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
||||||||..-+.-+..+|+=.|.++..+.+.+-. ..... ..++.+ ++...++ ...+.++.+-+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~-~~~~~~~v~~g~~~--~~~~~l~~l~~----------- 65 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWS-SPWEACAVILGSCS--KLAELLKELLK----------- 65 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-Hhhhh-cCCcEEEEEecCch--hHHHHHHHHHh-----------
Confidence 69999999999999999999999999988876542 22222 234544 4444444 33444555543
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
..+++|++.+......... ..+-+-|..|++..+|.++|.++
T Consensus 66 -----------~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 66 -----------WAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred -----------hCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 2458999999876655111 11556689999999999999875
|
g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO). |
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.23 Score=64.52 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..++++|+||+++..+......|+.+|+.+..+.+..+|...+.. ..||++++|..++. .++.. ....
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--------~~~dlil~D~~mp~--~~G~~--~~~~ 755 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--------HRFDLVLMDIRMPG--LDGLE--TTQL 755 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCHHH--HHHH
Confidence 456799999999999999999999999999999999999887643 46899999976542 22211 1222
Q ss_pred cCCCC--CcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNG--HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~--~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
++... .....| +++++..............|. +.++.||+....|..++.....
T Consensus 756 ir~~~~~~~~~~p-ii~lt~~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 756 WRDDPNNLDPDCM-IVALTANAAPEEIHRCKKAGM-NHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred HHhchhhcCCCCc-EEEEeCCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHh
Confidence 22211 112233 445555555555555555554 5799999999999988876653
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=60.34 Aligned_cols=180 Identities=21% Similarity=0.275 Sum_probs=110.0
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.++|+|||++..+......|+..|+.|..+.+..+|...+... .+|+++.|..+ ++.+.-. .+..++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--------~~~lvl~Di~m--p~~~Gl~--ll~~i~~ 72 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--------PFDLVLLDIRM--PGMDGLE--LLKEIKS 72 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--------CCCEEEEecCC--CCCchHH--HHHHHHh
Confidence 4699999999999999999999999999999999999887652 58999987654 4443321 2222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCC-CC---------CCC-CC
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR-GV---------PNG-SS 851 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~-~~---------~~~-~~ 851 (1006)
.. ..+|.+++... -+-.....+...|.. .++.||+....+...+.+++.......... .. ..+ +.
T Consensus 73 ~~--~~~pVI~~Tg~-g~i~~AV~A~k~GA~-Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~ 148 (464)
T COG2204 73 RD--PDLPVIVMTGH-GDIDTAVEALRLGAF-DFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESP 148 (464)
T ss_pred hC--CCCCEEEEeCC-CCHHHHHHHHhcCcc-eeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCH
Confidence 21 34566554443 333333333333332 589999999999999888875422111100 00 000 00
Q ss_pred cccc--------ccccceEEEecCcHHHHHHHHHHHhhcCC-------eEEEeCCHHHHHHH
Q 001846 852 FHQG--------LLRGKKILVVDDNGVNRMVAAGALKKFGA-------TVECAASAKAALDK 898 (1006)
Q Consensus 852 ~~~~--------~~~~~~ILvVDDn~~n~~~l~~~L~~~G~-------~v~~a~~g~eAl~~ 898 (1006)
..+. ....-.|||.-..-.=.+++..++.+.+- .+-|+.=..+.++.
T Consensus 149 am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 149 AMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 0000 01223578887777777777777776542 35566655665553
|
|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.27 Score=62.89 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++|+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..++ +.++.. ....
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--------~~~Dlvl~D~~mp--~~~G~e--~~~~ 590 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--------DEYDLVLLDIQLP--DMTGLD--IARE 590 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--------CCCCEEEEcCCCC--CCCHHH--HHHH
Confidence 356789999999999999999999999999999999999887642 4689999987653 222211 1222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++........|++++++.+... ........|. +.++.||+....+..++.+.+..
T Consensus 591 ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 591 LRERYPREDLPPLVALTANVLK-DKKEYLDAGM-DDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHhccccCCCCcEEEEECCchH-hHHHHHHCCC-CEEEECCCCHHHHHHHHHHHhcc
Confidence 2222222233445555544332 2333444454 57999999999999999887743
|
|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0066 Score=60.00 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=40.9
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCCC--CCCCCCCcccc--HHHHHHHHHHhCCEEEEEeeCCC-ceEEEEEE
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADSS--TSRHYGGTGIG--LSISKCLVELMRGQISFVSRPQV-GSTFSFTA 675 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s--~s~~~gGtGLG--LsI~k~Lv~lmgG~I~v~S~~g~-GstF~f~l 675 (1006)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|.... ..+++|..
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEE
Confidence 48999999999999999988665433221 12245667888 4433 36788999998653 33444443
|
... |
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.033 Score=68.63 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=33.9
Q ss_pred EEEEecCCCCChhHHhh--------hccccccCCC---CCCCCCCC-ccccHHHHHHHHHH
Q 001846 606 VCVEDTGIGIPLSAQER--------VFMPFMQADS---STSRHYGG-TGIGLSISKCLVEL 654 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~--------iF~pF~q~~~---s~s~~~gG-tGLGLsI~k~Lv~l 654 (1006)
|+|.|+|.|||.+..+. +|....-... ..-+..+| .|.||+.+..+.+.
T Consensus 71 I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 71 VSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred EEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 89999999999999888 8877432211 11112233 79999988888543
|
|
| >COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.61 Score=44.49 Aligned_cols=120 Identities=29% Similarity=0.449 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHH-HHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK-DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~-~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~ 778 (1006)
..+.+++++|+++..+......|+.+|..+..+.+.. ++........ .+|++++|..+. +.+ +. ....
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-------~~dlii~D~~mp--~~~-G~-~~~~ 71 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-------QPDLILLDINMP--GMD-GI-ELLR 71 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-------CCCEEEEeCCCC--CCC-HH-HHHH
Confidence 3567899999999999999999999999999999995 8888766521 589999998775 222 11 1122
Q ss_pred hcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHH-HHHHHHHhh
Q 001846 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM-IAACLQQVL 834 (1006)
Q Consensus 779 ~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~-l~~~l~~~l 834 (1006)
.++.. ....| ++++...............| .+.++.||+.... +...+.+.+
T Consensus 72 ~l~~~--~~~~p-vv~~t~~~~~~~~~~~~~~g-~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 72 RLRAR--GPNIP-VILLTAYADEADRERALAAG-ADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred HHHhC--CCCCC-EEEEEcCcCHHHHHHHHHcC-CCeEEcCCCCcHHHHHHHHHHHH
Confidence 22222 23456 45555554444333334444 3569999976555 555555433
|
|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.31 Score=63.76 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=86.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+.++++||+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..++. .++.. ....+
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--------~~~dlvl~D~~mp~--~~g~~--~~~~i 768 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--------HAFDLALLDINLPD--GDGVT--LLQQL 768 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--------CCCCEEEECCCCCC--CCHHH--HHHHH
Confidence 44689999999999999999999999999999999999988754 46899999876532 22211 11222
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+.........++++++..............|+ +.++.||+....|...+...+.
T Consensus 769 r~~~~~~~~~pii~lta~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 769 RAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGF-DGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred HhCccccCCCeEEEEECCCCHHHHHHHHHCCC-CEEEeCCCCHHHHHHHHHHHhc
Confidence 22211111134555555555555555555564 5799999999999999988764
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). |
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.3 Score=43.73 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=85.7
Q ss_pred cceEEEe----cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCC--HHHHHHHHHhh
Q 001846 859 GKKILVV----DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMD--GFEATRRIRQM 929 (1006)
Q Consensus 859 ~~~ILvV----DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~ 929 (1006)
+++||+. |.+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|+... --++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4578888 888888999999999999999864 456777777765 5699999998887432 23344444432
Q ss_pred hchhhhhhccCCCCcCCCcccCCCCCcEEEEecCC------CHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV------IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 930 e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
. ..+++|++ -+.. ..++..++.+.|++......-+.++....|++.++.
T Consensus 82 ~---------------------~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 82 G---------------------LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred C---------------------CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhcc
Confidence 1 11344443 3322 355667899999999999889999999999888754
|
|
| >PLN03029 type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.67 Score=49.67 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCC------------CCCCCCCCcEEEEccCccccC
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLT------------SSEDKFQPDIILVEKDCWISG 768 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~------------~~~~~~~~~~ilid~~~~~~~ 768 (1006)
...++|+||+++.........|+.+|+.+..+.+..++...+..... .......+|++++|..+..
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~-- 84 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG-- 84 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC--
Confidence 45789999999999999999999999999999999999887643211 1123446889999876542
Q ss_pred CCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHh
Q 001846 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833 (1006)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~ 833 (1006)
.+. ...+..++........|.+ ++...............| .+.++.||+....|.......
T Consensus 85 ~~G--~e~l~~ir~~~~~~~ipvI-ils~~~~~~~~~~al~~G-a~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 85 MTG--YDLLKKIKESSSLRNIPVV-IMSSENVPSRITRCLEEG-AEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred CCH--HHHHHHHHhccccCCCcEE-EEeCCCCHHHHHHHHHhC-chheEECCCCHHHHHHHHHHH
Confidence 221 1122223322222234544 444444444444444445 357999999988876655443
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.3 Score=42.80 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=71.7
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCH--HHHHHHHHhhhchhhhhhccC
Q 001846 866 DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDG--FEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
|.+..=...+..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|+..-. -++++++|+..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~---------- 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELG---------- 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcC----------
Confidence 556666677888999999998864 346677777765 56999999887753322 22233333310
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHH
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l 994 (1006)
...+ .|++-+....+..++..++|+|+|+..=-+.++....|
T Consensus 79 -----------~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 -----------AGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred -----------CCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 1133 45555556677788899999999999877777766554
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PRK00742 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=5 Score=46.15 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcc
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~ 765 (1006)
..+++++|+++..+......|+.. |+.+. .+.+..++...... ..+|++++|..+.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--------~~~DlVllD~~mp 60 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--------LNPDVITLDVEMP 60 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--------hCCCEEEEeCCCC
Confidence 368999999999999999999886 78776 78888888876532 4689999987654
|
|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.61 Score=60.67 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.++++||+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..++. .+.-.. ...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--------~~~DlVl~D~~mP~--mdG~el--~~~ 866 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--------NHIDIVLTDVNMPN--MDGYRL--TQR 866 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--------CCCCEEEEcCCCCC--CCHHHH--HHH
Confidence 356799999999999999999999999999999999999987654 46999999987643 222111 111
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++... ...| ++.++......+.......|. +.++.||+....+...+....
T Consensus 867 ir~~~--~~~p-II~lTa~~~~~~~~~~~~aG~-d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 867 LRQLG--LTLP-VIGVTANALAEEKQRCLEAGM-DSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred HHhcC--CCCC-EEEEECCCCHHHHHHHHHCCC-CEEEeCCCCHHHHHHHHHHHH
Confidence 22211 1344 444444444455555555564 579999999999998887654
|
|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.089 Score=64.78 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=32.5
Q ss_pred EEEEecCCCCChhH--------Hhhhc-cccccC--CCCCCCCCCC-ccccHHHHHHHHHH
Q 001846 606 VCVEDTGIGIPLSA--------QERVF-MPFMQA--DSSTSRHYGG-TGIGLSISKCLVEL 654 (1006)
Q Consensus 606 i~V~DtG~GI~~e~--------~~~iF-~pF~q~--~~s~s~~~gG-tGLGLsI~k~Lv~l 654 (1006)
|+|.|+|.|||.+. .+-+| ...... +....+..+| .|.||+.+..+.+.
T Consensus 64 I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 64 IEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred EEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 89999999999988 67677 332111 1111112233 79999999988874
|
This protein is active as an alpha(2)beta(2) heterotetramer. |
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.67 Score=60.34 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++|+++.........|+.+|+.+..+.+..++...+.. ..+||++++|..++. .++.. ....
T Consensus 679 ~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-------~~~~Dlvl~D~~mp~--~~G~~--~~~~ 747 (914)
T PRK11466 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-------SEPFAAALVDFDLPD--YDGIT--LARQ 747 (914)
T ss_pred cCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-------CCCCCEEEEeCCCCC--CCHHH--HHHH
Confidence 456789999999999999999999999999999999999876542 246899999886543 22211 1112
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
++.. ....| +++++..............|. +.++.||+....+...+.+.+.
T Consensus 748 lr~~--~~~~~-ii~~t~~~~~~~~~~~~~~g~-~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 748 LAQQ--YPSLV-LIGFSAHVIDETLRQRTSSLF-RGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred HHhh--CCCCC-EEEEeCCCchhhHHHHHhcCc-CCEEeCCCCHHHHHHHHHHHhh
Confidence 2221 11334 344444444444444444454 4589999999999999988774
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.2 Score=50.92 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=108.7
Q ss_pred EEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 784 (1006)
++++|+++..+......++..|+.+..+.+..++...+.. ..||++++|..+.. .+. + ..+..++...
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--------~~~DlVllD~~~p~--~~g-~-~ll~~l~~~~ 68 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--------GQPDLLITDVRMPG--EDG-L-DLLPQIKKRH 68 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEEcCCCCC--CCH-H-HHHHHHHHhC
Confidence 4789999999999999999999999999999988876542 36899999876532 211 1 1111222111
Q ss_pred CcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCccccccccceEEE
Q 001846 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILV 864 (1006)
Q Consensus 785 ~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ILv 864 (1006)
.. .+++++...............| .+.++.||+....+...+...+.......... ... ...+....+
T Consensus 69 --~~-~~vIvlt~~~~~~~~~~a~~~G-a~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~-~~~-------~~~~~~~~l 136 (463)
T TIGR01818 69 --PQ-LPVIVMTAHSDLDTAVAAYQRG-AFEYLPKPFDLDEAVTLVERALAHAQEQVALP-ADA-------GEAEDSAEL 136 (463)
T ss_pred --CC-CeEEEEeCCCCHHHHHHHHHcC-cceeecCCCCHHHHHHHHHHHHHHHHHHHhhh-hhh-------hccccccce
Confidence 12 3444555444443344444444 35789999999999888877654322111100 000 001112458
Q ss_pred ecCcHHHHHHHHHHHhhcCCe--EEE---eCCHHHHHHHh----cCCCCCcEEEEeCCC
Q 001846 865 VDDNGVNRMVAAGALKKFGAT--VEC---AASAKAALDKL----QSPHCFDACFMDIQM 914 (1006)
Q Consensus 865 VDDn~~n~~~l~~~L~~~G~~--v~~---a~~g~eAl~~l----~~~~~~DlIlmDi~M 914 (1006)
+.+++.++.++..+.+..+.. +.. ...|++.+... .....--++..||..
T Consensus 137 ig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~ 195 (463)
T TIGR01818 137 IGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAA 195 (463)
T ss_pred eecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCC
Confidence 899999998888776544333 222 34566655432 111223566667654
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
Probab=92.83 E-value=2 Score=44.89 Aligned_cols=119 Identities=21% Similarity=0.294 Sum_probs=77.9
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........|+..|+.+..+.+..++...... ..||++++|..... .+ + ......++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~d~vi~d~~~~~--~~-g-~~~~~~l~~ 70 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--------RGPDLILLDWMLPG--TS-G-IELCRRLRR 70 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--------cCCCEEEEECCCCC--Cc-H-HHHHHHHHc
Confidence 578999999999999999999999999888898888876543 46899999876532 11 1 112222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.......| ++++...............| .+.++.||.....+...+...+.
T Consensus 71 ~~~~~~~~-ii~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 71 RPETRAIP-IIMLTARGEEEDRVRGLETG-ADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred cccCCCCC-EEEEecCCCHHHHHHHHhcC-cceEEeCCCCHHHHHHHHHHHhc
Confidence 21112334 44444443333333344444 45789999999998888877664
|
PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. |
| >PRK10161 transcriptional regulator PhoB; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=2 Score=45.40 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........|+..|+.+..+.+..++...... ..||++++|..... .+. ......++.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~g--~~~~~~l~~ 70 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--------PWPDLILLDWMLPG--GSG--IQFIKHLKR 70 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------cCCCEEEEeCCCCC--CCH--HHHHHHHHh
Confidence 578999999999999999999999999999998888876532 46899999876532 111 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.......|.+ +++..............| .+.++.||.....+...+...+.
T Consensus 71 ~~~~~~~pvi-~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 71 ESMTRDIPVV-MLTARGEEEDRVRGLETG-ADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred ccccCCCCEE-EEECCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHh
Confidence 2111234444 444443433333444444 45799999999999888877654
|
|
| >PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.57 Score=44.79 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC--CCHHHHHHHHHhhhchhhhhhccCCCCcCCCccc
Q 001846 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE--MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950 (1006)
Q Consensus 873 ~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~ 950 (1006)
..+...|++.|++|..+.+.++|+..++.....+.|++|+. ++ ....+++++||..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45667788899999999999999999988777899999985 11 1235677777763
Q ss_pred CCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHH
Q 001846 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990 (1006)
Q Consensus 951 ~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L 990 (1006)
...+||.+++.....+..-...-.-.++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 237999999987655555556666789999887655444
|
Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D. |
| >PRK12555 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=8.3 Score=44.03 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=44.0
Q ss_pred CeEEEEcCchhHHHHHHHHH-HHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcc
Q 001846 703 LKAVVVDEKPVRAAVTQYHL-NRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l-~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~ 765 (1006)
++++++|+++..+......| +..|+.+. .+++..++...+.. ..||++++|.++.
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--------~~pDlVllD~~mp 57 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--------QPPDVILMDLEMP 57 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--------cCCCEEEEcCCCC
Confidence 37899999999999988888 57788875 67888888876543 4689999987653
|
|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.22 Score=61.58 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=24.6
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHhccCCCC---eEEEEE
Q 001846 488 PEFVLG--DPGRFRQIITNLVGNSVKFTERG---HIFVKV 522 (1006)
Q Consensus 488 p~~v~g--D~~rl~QIl~NLl~NAiKfT~~G---~I~v~v 522 (1006)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i 65 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTI 65 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEE
Confidence 444544 56779999999999999844345 566655
|
|
| >PRK10643 DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=2.9 Score=43.58 Aligned_cols=117 Identities=17% Similarity=0.321 Sum_probs=77.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++|+++.........|+..|+.+..+.+..++...... ..||++++|.+... .+ +. ..+..++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~d~illd~~~~~--~~-g~-~~~~~l~~ 68 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--------GHYSLVVLDLGLPD--ED-GL-HLLRRWRQ 68 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--------CCCCEEEEECCCCC--CC-HH-HHHHHHHh
Confidence 368999999999999999999999999988898888776543 36899999876532 11 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| ++++....+..........| .+.++.||.....+.+.+...+.
T Consensus 69 ~~--~~~p-ii~ls~~~~~~~~~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 69 KK--YTLP-VLILTARDTLEDRVAGLDVG-ADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred cC--CCCc-EEEEECCCCHHHHHHHHhcC-CCeEEeCCCCHHHHHHHHHHHHh
Confidence 11 1234 34444444444433444444 35789999999998888877664
|
|
| >PRK09836 DNA-binding transcriptional activator CusR; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.9 Score=44.09 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=77.2
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++++++.........|+..|+.+..+.+..++...... ..||++++|..... .+. ......++.
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~~~~--~~g--~~~~~~lr~ 68 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--------GDYDLIILDIMLPD--VNG--WDIVRMLRS 68 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--------CCCCEEEEECCCCC--CCH--HHHHHHHHh
Confidence 368999999999999999999999999999998888765432 46899999876432 111 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| ++++...............| .+.++.||.....+...+...+.
T Consensus 69 ~~--~~~p-ii~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 69 AN--KGMP-ILLLTALGTIEHRVKGLELG-ADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred cC--CCCC-EEEEEcCCCHHHHHHHHhCC-CCEEEeCCCCHHHHHHHHHHHHh
Confidence 11 1334 34444444444433444444 45799999999999888877664
|
|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.21 Score=62.13 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=23.7
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHhccCCCC---eEEEEE
Q 001846 488 PEFVLG--DPGRFRQIITNLVGNSVKFTERG---HIFVKV 522 (1006)
Q Consensus 488 p~~v~g--D~~rl~QIl~NLl~NAiKfT~~G---~I~v~v 522 (1006)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 19 P~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 19 PGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 444444 45679999999999999833334 555555
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB. |
| >PRK09468 ompR osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.8 Score=44.65 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=78.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..+++++++++.........++..|+.+..+.+..++...... ..||++++|..... .+ + ......++
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~-g-~~~~~~lr 72 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--------ESFHLMVLDLMLPG--ED-G-LSICRRLR 72 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-H-HHHHHHHH
Confidence 4679999999999999999999999999999999888766532 46899999876432 11 1 11122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
... ...| ++++....+..........| .+.++.||+....+.+.+...+..
T Consensus 73 ~~~--~~~p-ii~ls~~~~~~~~~~~l~~G-a~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 73 SQN--NPTP-IIMLTAKGEEVDRIVGLEIG-ADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred hcC--CCCC-EEEEECCCcHHHHHHHHhcC-CCeEEECCCCHHHHHHHHHHHhcc
Confidence 211 1234 44444444433333333344 467999999999999888877643
|
|
| >PRK11173 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.1 Score=44.30 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=77.8
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++++++.........|+..|+.+..+.+..++...+.. ..||++++|..... .+ +. .....++.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~-g~-~~~~~lr~ 71 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--------NDINLVIMDINLPG--KN-GL-LLARELRE 71 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--------CCCCEEEEcCCCCC--CC-HH-HHHHHHhc
Confidence 478999999999999999999999999999999988876543 46899999876532 11 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...|. ++++..............| .+.++.||.....+...+...+.
T Consensus 72 ~---~~~pi-i~lt~~~~~~~~~~~~~~g-a~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 72 Q---ANVAL-MFLTGRDNEVDKILGLEIG-ADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred C---CCCCE-EEEECCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHh
Confidence 2 13444 4444444433333333444 56799999999988877776654
|
|
| >PRK10336 DNA-binding transcriptional regulator QseB; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.9 Score=43.55 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++|+++.........|+..|+.+..+.+..++...... ..||++++|...... ....... .++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~~-~g~~~~~---~i~~ 68 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--------APYDAVILDLTLPGM-DGRDILR---EWRE 68 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--------CCCCEEEEECCCCCC-CHHHHHH---HHHh
Confidence 368999999999999999999999999888888888765432 468999998765321 1111122 2221
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| +++++..............| .+.++.||.....+...+...+.
T Consensus 69 ~~--~~~~-ii~lt~~~~~~~~~~~~~~g-a~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 69 KG--QREP-VLILTARDALAERVEGLRLG-ADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cC--CCCc-EEEEECCCCHHHHHHHHhCC-CCeEEECCCCHHHHHHHHHHHHh
Confidence 11 1233 44444444433333333444 45789999999998888876654
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.3 Score=44.71 Aligned_cols=115 Identities=15% Similarity=0.326 Sum_probs=72.7
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
+++|+|||++..+++-+.+++.+ |+++ -.+.+.++|...+.. ..||+|++|--++. +.+..+... +
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--------~~pDLILLDiYmPd-~~Gi~lL~~---i 68 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--------FKPDLILLDIYMPD-GNGIELLPE---L 68 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--------hCCCEEEEeeccCC-CccHHHHHH---H
Confidence 36899999999999998888874 5554 467889998887765 46799999854432 222223222 2
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHh
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~ 833 (1006)
+... -...+++++..-...-....-..|.. .++.||+....+..+|.+.
T Consensus 69 r~~~---~~~DVI~iTAA~d~~tI~~alr~Gv~-DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 69 RSQH---YPVDVIVITAASDMETIKEALRYGVV-DYLIKPFTFERLQQALTRY 117 (224)
T ss_pred HhcC---CCCCEEEEeccchHHHHHHHHhcCch-hheecceeHHHHHHHHHHH
Confidence 2211 12233444333333333444445554 4899999999998888654
|
|
| >TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator | Back alignment and domain information |
|---|
Probab=91.79 E-value=3 Score=43.94 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.5
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcccc-CCCcchhHhhhhcCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS-GEDSGFNAQLLDWKP 782 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~-~~~~~~~~~~~~~~~ 782 (1006)
+++++|+++.........|+..|+.+..+.+..++...+.. ..||++++|...... .....+.. .++.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~~~~~g~~~~~---~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--------RLPDLAIIDIGLGEEIDGGFMLCQ---DLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--------CCCCEEEEECCCCCCCCCHHHHHH---HHHh
Confidence 58999999999999999999999999888888888776543 468999998765321 01112222 2222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|. ++++..............| .+.++.||.....+.+.+...+.
T Consensus 71 ~~--~~~pi-i~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 71 LS--ATLPI-IFLTARDSDFDTVSGLRLG-ADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred cC--CCCCE-EEEECCCCHHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHH
Confidence 11 13443 4444444433333344444 46799999999998888877664
|
This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. |
| >PRK10816 DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.9 Score=43.94 Aligned_cols=117 Identities=24% Similarity=0.388 Sum_probs=77.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++++++.........|+..|+.+..+.+..++...+.. ..||++++|..... .+ +. .....++.
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--------~~~dlvild~~l~~--~~-g~-~l~~~lr~ 68 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--------HLPDIAIVDLGLPD--ED-GL-SLIRRWRS 68 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--------CCCCEEEEECCCCC--CC-HH-HHHHHHHh
Confidence 368999999999999999999999999999999998776532 46899999865432 11 11 11122222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|.+ ++....+..........| .+.++.||.....+...+...+.
T Consensus 69 ~~--~~~pii-~ls~~~~~~~~~~~l~~G-a~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 69 ND--VSLPIL-VLTARESWQDKVEVLSAG-ADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred cC--CCCCEE-EEEcCCCHHHHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHh
Confidence 11 134444 444444433333344444 45799999999999888877664
|
|
| >PRK10840 transcriptional regulator RcsB; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=2.8 Score=44.24 Aligned_cols=119 Identities=8% Similarity=0.092 Sum_probs=76.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCC-E-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcccc--CCCcchhHhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGI-M-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS--GEDSGFNAQL 777 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~-~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~--~~~~~~~~~~ 777 (1006)
+++++++|+++.........|+..+. . +..+.+..++...+.. ..||++++|...... .....+...+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--------~~~DlvllD~~l~~~~~~~g~~~~~~l 74 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--------LDAHVLITDLSMPGDKYGDGITLIKYI 74 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--------CCCCEEEEeCcCCCCCCCCHHHHHHHH
Confidence 36899999999999999999988765 2 6667888888776543 468999998765321 1122222222
Q ss_pred hhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 778 ~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.... ...++++++...+..........| .+.++.||.....+..++..+..
T Consensus 75 ~~~~------~~~~iIvls~~~~~~~~~~a~~~G-a~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 75 KRHF------PSLSIIVLTMNNNPAILSAVLDLD-IEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHC------CCCcEEEEEecCCHHHHHHHHHCC-CeEEEECCCCHHHHHHHHHHHHC
Confidence 2211 123455555544444444444444 35789999999999888877653
|
|
| >PRK10955 DNA-binding transcriptional regulator CpxR; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=3.4 Score=43.55 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=75.9
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++|+++.........|+..|+.+..+.+..++..... ..||++++|..... .+. ......++..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---------~~~d~vl~d~~~~~--~~g--~~~~~~l~~~ 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---------DSIDLLLLDVMMPK--KNG--IDTLKELRQT 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---------cCCCEEEEeCCCCC--CcH--HHHHHHHHhc
Confidence 6899999999999999999999999998888888876532 25899999876532 111 1122222222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ..| +++++..............| .+.++.||.....+...+...+.
T Consensus 70 ~---~~~-ii~lt~~~~~~~~~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 H---QTP-VIMLTARGSELDRVLGLELG-ADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred C---CCc-EEEEECCCCHHHHHHHHHcC-CCEEEcCCCCHHHHHHHHHHHHh
Confidence 2 134 44444433433333344444 45799999999999888877664
|
|
| >COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=91.27 E-value=3.5 Score=40.96 Aligned_cols=115 Identities=20% Similarity=0.187 Sum_probs=76.7
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
..++|||+......+...+++-|+.|..+.+..+++...+. .+|...++|...-. +.+......+.+.+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--------~~PayAvvDlkL~~-gsGL~~i~~lr~~~-- 79 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--------APPAYAVVDLKLGD-GSGLAVIEALRERR-- 79 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--------CCCceEEEEeeecC-CCchHHHHHHHhcC--
Confidence 57899999999999999999999999999999999988765 46777777765432 22222222222222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
..-.+++++..-+-.........| .+.++.||.....+..++.+..
T Consensus 80 ----~d~rivvLTGy~sIATAV~AvKlG-A~~YLaKPAdaDdi~aAl~~~~ 125 (182)
T COG4567 80 ----ADMRIVVLTGYASIATAVEAVKLG-ACDYLAKPADADDILAALLRRE 125 (182)
T ss_pred ----CcceEEEEecchHHHHHHHHHHhh-hhhhcCCCCChHHHHHHHhhcC
Confidence 223455555443333322222223 3468999999999888886653
|
|
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
Probab=91.01 E-value=4 Score=43.54 Aligned_cols=117 Identities=13% Similarity=0.233 Sum_probs=76.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CC-EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GI-MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~-~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+++++|+++..+......++.. |+ .+..+.+..++...... ..||++++|..+.. .+. + ..+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--------~~pdlvllD~~mp~--~~g-l-e~~~~ 71 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--------FKPGLILLDNYLPD--GRG-I-NLLHE 71 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--------cCCCEEEEeCCCCC--CcH-H-HHHHH
Confidence 468999999999999999899864 77 46788899888877643 46899999876532 221 1 11112
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++... ... ++++++..............| .+.++.||.....+..++....
T Consensus 72 l~~~~--~~~-~iivls~~~~~~~~~~al~~G-a~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 72 LVQAH--YPG-DVVFTTAASDMETVSEAVRCG-VFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred HHhcC--CCC-CEEEEEcCCCHHHHHHHHHcC-ccEEEECCcCHHHHHHHHHHHH
Confidence 22111 112 345555444444444444444 4579999999999988887654
|
|
| >PRK10529 DNA-binding transcriptional activator KdpE; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=4.6 Score=42.39 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=76.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........|+..|+.+..+.+..++...... ..||++++|..... .+. . .....++.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~g-~-~~~~~lr~ 69 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--------RKPDLIILDLGLPD--GDG-I-EFIRDLRQ 69 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCH-H-HHHHHHHc
Confidence 368999999999999999999999999988888888765432 46899999876532 111 1 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...|.++ +...............| .+.++.||+....+.+.+...+.
T Consensus 70 ~---~~~pvi~-lt~~~~~~~~~~~~~~g-a~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 70 W---SAIPVIV-LSARSEESDKIAALDAG-ADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred C---CCCCEEE-EECCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHh
Confidence 1 1345444 44333333333333344 45799999999999888877664
|
|
| >PRK13856 two-component response regulator VirG; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=4.2 Score=43.54 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=76.1
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++++++.........|+..|+.+..+.+..++...... ..||++++|..... .+ +. ..+..++..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvi~d~~l~~--~~-g~-~l~~~i~~~ 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--------ETVDVVVVDLNLGR--ED-GL-EIVRSLATK 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--------CCCCEEEEeCCCCC--CC-HH-HHHHHHHhc
Confidence 68999999999999999999999999999998888766533 46899999876532 11 11 112222221
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...|.+++................| .+.++.||.....+.+.+...+.
T Consensus 71 ---~~~pii~lt~~~~~~~~~~~~l~~G-a~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ---SDVPIIIISGDRLEEADKVVALELG-ATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ---CCCcEEEEECCCCcHHHHHHHHhcC-cCeEEeCCCCHHHHHHHHHHHHh
Confidence 1345444332222333333333334 46799999999998888876664
|
|
| >PRK13435 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.5 Score=41.31 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
..+++++++++.........+...|+.+. .+++..++...... ..||++++|...........+... .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~dliivd~~~~~~~~~~~~~~~---l 73 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--------RQPDVALVDVHLADGPTGVEVARR---L 73 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--------cCCCEEEEeeecCCCCcHHHHHHH---H
Confidence 46899999999999999999999999876 67888887765432 368999998754211111112122 1
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+.. ...| ++++..... . ......| .+.++.||+....+.+.+.+...
T Consensus 74 ~~~---~~~p-ii~ls~~~~--~-~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 74 SAD---GGVE-VVFMTGNPE--R-VPHDFAG-ALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred HhC---CCCC-EEEEeCCHH--H-HHHHhcC-cceeEeCCCCHHHHHHHHHHHHh
Confidence 111 1234 444443322 1 1222233 45789999999999998887763
|
|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=90.87 E-value=3.3 Score=39.53 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhhchhhhhhccC
Q 001846 866 DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEM--DGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
|.+..-..++..+|+..||+|... .+.++.++.+.+ ..||+|.+-..|... +..++++.+|+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~---------- 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEAG---------- 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHcC----------
Confidence 556667788999999999998653 345666777765 569999998875543 3344555555421
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeC
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
...++ |++-+.......+.+.+.|+|.|+..
T Consensus 79 -----------~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 79 -----------LDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred -----------CCCCe-EEEECCCCChhHHHHHHcCCeEEECC
Confidence 01344 45555555555567889999988763
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PRK10766 DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=4.7 Score=42.19 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=76.6
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++++++.........++..|+.+..+.+..++...... ..+|++++|..... .+. ......++.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~g--~~~~~~lr~ 70 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--------QHVDLILLDINLPG--EDG--LMLTRELRS 70 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCH--HHHHHHHHh
Confidence 578999999999999999999999999999999988766542 46899999875422 111 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...| +++++..............| .+.++.||+....+...+...+.
T Consensus 71 ~---~~~~-ii~l~~~~~~~~~~~~l~~G-a~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 71 R---STVG-IILVTGRTDSIDRIVGLEMG-ADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred C---CCCC-EEEEECCCcHHHHHHHHHcC-CCcEEeCCCCHHHHHHHHHHHHh
Confidence 2 1344 34444444443333333444 45799999999988887766553
|
|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.77 Score=56.73 Aligned_cols=58 Identities=16% Similarity=0.333 Sum_probs=37.8
Q ss_pred EEEEEecCCCCChhHHhhhccccccCC------------CCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQAD------------SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~------------~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g 666 (1006)
.|.|+|||+||+.+++...|...-... .+...-.|-.|+|+.= +=..+-++.|.|+..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCC
Confidence 389999999999999988764433211 0112234668899852 223356888988763
|
|
| >PRK11517 transcriptional regulatory protein YedW; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=5.2 Score=41.79 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=77.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++++++.........++..|+.+..+.+..++...... ..||++++|..... .+ +. .....++.
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--------~~~dlvi~d~~~~~--~~-g~-~~~~~l~~ 68 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--------DDYALIILDIMLPG--MD-GW-QILQTLRT 68 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEECCCCC--CC-HH-HHHHHHHc
Confidence 468999999999999999999999999999999888776532 46899999876432 11 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...|. +++...............| .+.++.||.....+...+...+.
T Consensus 69 ~---~~~~i-i~ls~~~~~~~~~~a~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 69 A---KQTPV-ICLTARDSVDDRVRGLDSG-ANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred C---CCCCE-EEEECCCCHHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHc
Confidence 1 12344 4444444444343444444 35799999999999888877664
|
|
| >CHL00148 orf27 Ycf27; Reviewed | Back alignment and domain information |
|---|
Probab=90.44 E-value=5 Score=42.50 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
.++++++|+++.........++..|+.+..+.+..++...... ..||++++|..... .+ +. ..+..++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--------~~~d~illd~~~~~--~~-g~-~~~~~l~ 73 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--------EQPDLVILDVMMPK--LD-GY-GVCQEIR 73 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCC--CC-HH-HHHHHHH
Confidence 4689999999999999999999999999888888888766532 46899999876532 11 11 1112222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|. ++++..............| .+.++.||.....+...+...+.
T Consensus 74 ~~---~~~~i-i~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 74 KE---SDVPI-IMLTALGDVSDRITGLELG-ADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred hc---CCCcE-EEEECCCCHHhHHHHHHCC-CCEEEeCCCCHHHHHHHHHHHHh
Confidence 21 13444 4444443333333333444 45789999999999888877654
|
|
| >PRK10701 DNA-binding transcriptional regulator RstA; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=4.6 Score=43.03 Aligned_cols=115 Identities=23% Similarity=0.211 Sum_probs=76.7
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++++++.........|+..|+.+..+.+..++...+.. ..||++++|..+.. .+. + .....++..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--------~~~dlvild~~l~~--~~g-~-~~~~~ir~~ 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--------EQPDLVLLDIMLPG--KDG-M-TICRDLRPK 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCC--CCH-H-HHHHHHHhc
Confidence 68999999999999999999999999999998888776543 46899999876532 111 1 111222221
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...|.+ ++...............| .+.++.||+....+...+...+.
T Consensus 71 ---~~~pii-~l~~~~~~~~~~~~~~~G-a~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 71 ---WQGPIV-LLTSLDSDMNHILALEMG-ACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ---CCCCEE-EEECCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHh
Confidence 123443 444444433333344444 45799999999998888876654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.37 E-value=1.5 Score=47.87 Aligned_cols=114 Identities=20% Similarity=0.309 Sum_probs=80.6
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
+++++||++......+...|++.|-.+..+++..+|+..+.+ ..||++++|-.+.. ..+..|..+..++.+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--------~kpDLifldI~mp~-~ngiefaeQvr~i~~ 71 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--------FKPDLIFLDIVMPY-MNGIEFAEQVRDIES 71 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--------cCCCEEEEEeecCC-ccHHHHHHHHHHhhc
Confidence 378999999999999999999999888889999999988776 68999999876532 123455556555542
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
..| ++++++. .+......+-+.+.++.||+.+..|..++....
T Consensus 72 -----~v~-iifIssh---~eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 72 -----AVP-IIFISSH---AEYADDSFGMNLDDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred -----cCc-EEEEecc---hhhhhhhcccchHhhccCCCCHHHHHHHHHHHh
Confidence 233 3333332 222222233345679999999999988887665
|
|
| >COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.7 Score=47.47 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
.....+++|||.+.....++..|+..|+.+..+.+.+.+...... .++|+++.|..++ +.+.. ..+..
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--------~~~dlvllD~~mp--~mdg~--ev~~~ 79 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--------EPPDLVLLDVRMP--EMDGA--EVLNK 79 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--------cCCceEEeeccCC--CccHH--HHHHH
Confidence 345789999999999999999999999999999999987766443 3599999987653 33322 22333
Q ss_pred cCC-CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHH
Q 001846 780 WKP-NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830 (1006)
Q Consensus 780 ~~~-~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l 830 (1006)
++. ++.....|.+++.+-. ..........+ -.+.++.||++...+....
T Consensus 80 lk~~~p~t~~ip~i~lT~~~-d~~~~~~~~~~-g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 80 LKAMSPSTRRIPVILLTAYA-DSEDRQRALEA-GADDYLSKPISPKELVARV 129 (360)
T ss_pred HHhcCCcccccceEEEeecC-ChHHHHHHHHh-hHHHHhcCCCCHHHHHHHH
Confidence 333 3344455655444333 33333333443 4567999999977665544
|
|
| >PRK09958 DNA-binding transcriptional activator EvgA; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=5.1 Score=41.29 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
++++++|+++.........|+..|+.+. .+.+..++...... ..||++++|...... ....+...+....
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~g~~~~~~l~~~~ 71 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--------LKPDIVIIDVDIPGV-NGIQVLETLRKRQ 71 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--------cCCCEEEEeCCCCCC-CHHHHHHHHHhhC
Confidence 4689999999999999999999999986 57888888766543 468999998764321 1111222222111
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...| ++++...............| .+.++.||.....+...+...+.
T Consensus 72 -----~~~~-ii~ls~~~~~~~~~~~~~~g-a~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 72 -----YSGI-IIIVSAKNDHFYGKHCADAG-ANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred -----CCCe-EEEEeCCCCHHHHHHHHHCC-CCEEEecCCCHHHHHHHHHHHHc
Confidence 1223 44454443433333444444 46799999999999988887763
|
|
| >COG5381 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.82 Score=44.53 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEEEEee
Q 001846 498 FRQIITNLVGNSVKFTERGHIFVKVHLAE 526 (1006)
Q Consensus 498 l~QIl~NLl~NAiKfT~~G~I~v~v~~~~ 526 (1006)
+--+...|+.||+||...|.|.|..++..
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 33467789999999999999999988754
|
|
| >TIGR02875 spore_0_A sporulation transcription factor Spo0A | Back alignment and domain information |
|---|
Probab=90.08 E-value=4.5 Score=44.13 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=77.7
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+++++|+++.........++.. ++. +..+.+..++...+.. ..||++++|..+.. .++ . ..+..+
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--------~~~DlvllD~~mp~--~dG-~-~~l~~i 70 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--------QQPDVVVLDIIMPH--LDG-I-GVLEKL 70 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCC--CCH-H-HHHHHH
Confidence 57999999999999888888864 444 3467888888876643 46899999876532 221 1 111122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
+... ....|++++++..............|. +.++.||+....+...+.++...
T Consensus 71 ~~~~-~~~~~~iI~lt~~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 71 NEIE-LSARPRVIMLSAFGQEKITQRAVALGA-DYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred Hhhc-cccCCeEEEEeCCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHcc
Confidence 2211 112355666655444444444445554 46899999999999999887643
|
Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species. |
| >PRK11083 DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.5 Score=41.63 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=76.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........++..|+.+..+.+..++...... ..||++++|...... + + ...+..++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~~--~-g-~~~~~~l~~ 71 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--------QPPDLVILDVGLPDI--S-G-FELCRQLLA 71 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--------CCCCEEEEeCCCCCC--C-H-HHHHHHHHh
Confidence 478999999999998999999999999888888888765432 468999998765321 1 1 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
.. ...| ++++...............| .+.++.||.....+...+...+..
T Consensus 72 ~~--~~~~-ii~ls~~~~~~~~~~a~~~G-a~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 72 FH--PALP-VIFLTARSDEVDRLVGLEIG-ADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred hC--CCCC-EEEEEcCCcHHHHHHHhhcC-CCeEEECCCCHHHHHHHHHHHHCc
Confidence 11 1234 34444433333333333344 457999999999998888776643
|
|
| >COG4566 TtrR Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.72 E-value=4 Score=42.15 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=78.8
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcc-hhHhhhhcC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG-FNAQLLDWK 781 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~-~~~~~~~~~ 781 (1006)
.-+.+|||+...+......|+..|+.+.+.+|..+.+.... ...|-.++.|-. +++.++- +...+....
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--------~~~pGclllDvr--MPg~sGlelq~~L~~~~ 74 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--------LDRPGCLLLDVR--MPGMSGLELQDRLAERG 74 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--------CCCCCeEEEecC--CCCCchHHHHHHHHhcC
Confidence 34778999999999999999999999999999999886522 234556776654 4444432 333333322
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~ 837 (1006)
..+|.+++.. .-.-.-.-.....|-. .+|.||++.+.+.+++++.+...
T Consensus 75 -----~~~PVIfiTG-hgDIpmaV~AmK~GAv-DFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 75 -----IRLPVIFLTG-HGDIPMAVQAMKAGAV-DFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred -----CCCCEEEEeC-CCChHHHHHHHHcchh-hHHhCCCchHHHHHHHHHHHHHH
Confidence 3466655543 3333333333334443 48999999999999998887543
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=3.5 Score=48.97 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=79.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..++++||+++.........++..|+.+..+.+..++...+.. ..||++++|..+.. .+ ++. .+..++
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--------~~~dlvilD~~lp~--~~-g~~-ll~~l~ 72 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--------EKVDLVISDLRMDE--MD-GMQ-LFAEIQ 72 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--------CCCCEEEEcCCCCC--CC-HHH-HHHHHH
Confidence 4789999999999999999999999999999999999876543 46899999876532 21 111 111222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. .... ++++++...+..........|. ..++.||+....+...+...+.
T Consensus 73 ~~--~~~~-pvIvlt~~~~~~~~~~a~~~Ga-~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 73 KV--QPGM-PVIILTAHGSIPDAVAATQQGV-FSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred hc--CCCC-cEEEEECCCCHHHHHHHHhcCh-hhhccCCCCHHHHHHHHHHHHH
Confidence 21 1123 3445554444444444444443 4689999999999888877664
|
|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.35 Score=59.25 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=33.6
Q ss_pred EEEEEecCCCCChhHHhhhccccccCC-------CCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQAD-------SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~-------~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~ 665 (1006)
.++|+|||+||+.++..+.|--..... .......|..|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 489999999999999888763222110 01112346788887644333 2344555544
|
|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=3.4 Score=53.32 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++|+++.........|..+|+.+..+.+..++...+... ...+|+++++ ++..+.. .....
T Consensus 695 ~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~------~~~~DlVll~----~~~~~g~--~l~~~ 762 (828)
T PRK13837 695 GRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKG------PERFDLVLVD----DRLLDEE--QAAAA 762 (828)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC------CCCceEEEEC----CCCCCHH--HHHHH
Confidence 4577899999999999999999999999999999999999876432 2357999982 1222211 11111
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++.. ....| ++++...............| +.++.||+....+...+...+..
T Consensus 763 l~~~--~~~ip-IIvls~~~~~~~~~~~~~~G--~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 763 LHAA--APTLP-IILGGNSKTMALSPDLLASV--AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred HHhh--CCCCC-EEEEeCCCchhhhhhHhhcc--CcEEeCCCCHHHHHHHHHHHHcc
Confidence 2211 12334 44444444444444444445 67999999999999999887753
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=3.7 Score=48.59 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..+++++|+++.........++.+|+.+..+.+..++...+.. ..+|++++|..+.. .+ ++ .....++
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--------~~~DlvilD~~m~~--~~-G~-~~~~~ir 72 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--------QVFDLVLCDVRMAE--MD-GI-ATLKEIK 72 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-HH-HHHHHHH
Confidence 4689999999999999999999999999999999998876542 46899999876532 11 11 1111121
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ..+.+++++..............| ...++.||+....+..++...+.
T Consensus 73 ~~~---~~~~vi~lt~~~~~~~~~~a~~~g-a~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 73 ALN---PAIPVLIMTAYSSVETAVEALKTG-ALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred hhC---CCCeEEEEECCCCHHHHHHHHHhh-hHHHhcCCCCHHHHHHHHHHHHH
Confidence 111 123344444443333333333333 34688999999888888776553
|
|
| >PRK15426 putative diguanylate cyclase YedQ; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=43 Score=40.97 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHh----cCCceeeece-eecCCcccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHHHHHHH
Q 001846 192 EEDRENILRARA----TGKAVLTRPF-RLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLL 265 (1006)
Q Consensus 192 ~~~r~~i~~Ar~----tg~~~lt~p~-~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll 265 (1006)
|..|.....|.. .+...++.|+ .-..++.+.+.+..|||..+ .+.|+++..++++.+.+.+-
T Consensus 202 ~~~r~WY~~a~~~~~~~~~~~~~~~~~~d~~tg~~vit~s~pv~~~g------------~~~GVv~~di~l~~l~~~l~ 268 (570)
T PRK15426 202 YVTQPWFIGQSQRRNPGRGVRWFTSQPDDASNTEPQVTASVPVDAGN------------YWYGVLAMDIPVRSLQQFLR 268 (570)
T ss_pred cccChHHHhhhhhcCCCCCeeEecCCcccccCCCeEEEEEEEEccCC------------eEEEEEEEEecHHHHHHHHH
Confidence 444566666654 2344467675 43445566777888998632 23799999999987766544
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.9 Score=53.73 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=65.4
Q ss_pred eEEEecCcH-HH-----HHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhh
Q 001846 861 KILVVDDNG-VN-----RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 861 ~ILvVDDn~-~n-----~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~ 934 (1006)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++...+.....++|++|.+-. ..+++++||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 567776662 22 45566788889999999999999999887666788999995332 24578888763
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
...+||+++.............-.-.++|+.
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeee
Confidence 2369999987654333222222223455555
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=7 Score=46.76 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=77.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.++++||+++.........++..|+.+..+.+..++...+.. ..+|++++|..+.. .+. . ..+..++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--------~~~DlvllD~~lp~--~dg-l-~~l~~ir~ 71 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--------KTPDVLLSDIRMPG--MDG-L-ALLKQIKQ 71 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEECCCCCC--CCH-H-HHHHHHHh
Confidence 579999999999999999999999999999999998877643 46899999876532 221 1 11122221
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| +++++..............| ...++.||+....+...+...+.
T Consensus 72 ~~--~~~p-vIvlt~~~~~~~~~~a~~~G-a~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 72 RH--PMLP-VIIMTAHSDLDAAVSAYQQG-AFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred hC--CCCe-EEEEECCCCHHHHHHHHhcC-cceEEecCCcHHHHHHHHHHHHH
Confidence 11 1234 44444444433333333444 35799999999888887766553
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=87.62 E-value=13 Score=36.46 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=73.6
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCC
Q 001846 866 DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~ 942 (1006)
|-+..-..++..+|+..||+|... .+.++.++...+ +.+|+|.+--.|... .+.++.+.+.-.+.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~~~~--~~~~~~~~~~L~~~--------- 80 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLAGGH--LTLVPALRKELDKL--------- 80 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCchhhh--HHHHHHHHHHHHhc---------
Confidence 344445568889999999998853 467788888776 468999886655322 33344443321110
Q ss_pred CcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 943 ~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
...+++|+ +-+....++.++..++|+|+|+..=-+..+..+.+.+.+
T Consensus 81 --------g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 81 --------GRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred --------CCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 01134444 455556677888999999999987778888877777644
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK11697 putative two-component response-regulatory protein YehT; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=11 Score=40.14 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCC-E-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGI-M-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~-~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
++++++|+++.........++.+|. . +..+.+..++...... ..||++++|.++.. .++ .. ....+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--------~~~dlv~lDi~~~~--~~G-~~-~~~~l 69 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--------LKPDVVFLDIQMPR--ISG-LE-LVGML 69 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCC--CCH-HH-HHHHh
Confidence 4789999999999999999999883 3 3456788887766532 36899999987542 221 11 11112
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+.. ..|.+++++.. .. ........ ....++.||+....+..++..+..
T Consensus 70 ~~~----~~~~ii~vt~~-~~-~~~~a~~~-~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 70 DPE----HMPYIVFVTAF-DE-YAIKAFEE-HAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ccc----CCCEEEEEecc-HH-HHHHHHhc-CCcEEEECCCCHHHHHHHHHHHHH
Confidence 111 23455555433 22 12222222 235789999999999888877653
|
|
| >PRK09483 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=9.7 Score=39.58 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=75.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+++++|+++..+......|+.. |+.+. .+.+..++...... .+||++++|.+.... .+..+...+...
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~g~~~~~~l~~~ 72 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--------NAVDVVLMDMNMPGI-GGLEATRKILRY 72 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCCC-CHHHHHHHHHHH
Confidence 36899999999999999999875 77765 67888888766543 468999998765321 111121222111
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...+++++...............| .+.++.||.....+..++..++.
T Consensus 73 ~------~~~~ii~ls~~~~~~~~~~~~~~g-~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 73 T------PDVKIIMLTVHTENPLPAKVMQAG-AAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred C------CCCeEEEEeCCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHC
Confidence 1 123455555444444444444444 46799999999999988877664
|
|
| >PRK10610 chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=20 Score=32.48 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=72.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
+.++++++++++.........++..|.. +....+..++...... ..+|++++|..... .. + ......
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~di~l~d~~~~~--~~-~-~~~~~~ 71 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--------GGFGFVISDWNMPN--MD-G-LELLKT 71 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--------cCCCEEEEcCCCCC--CC-H-HHHHHH
Confidence 3468899999999999999999999984 6777788777665422 46899998754321 11 1 111222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++........| ++++...............| .+.++.||+....+...+...+
T Consensus 72 l~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~g-~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 72 IRADGAMSALP-VLMVTAEAKKENIIAAAQAG-ASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred HHhCCCcCCCc-EEEEECCCCHHHHHHHHHhC-CCeEEECCCCHHHHHHHHHHHH
Confidence 22222222334 34444433333333333334 3468899999988887776654
|
|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=5.3 Score=53.79 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=81.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
...++++||+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..+. +.+... .+..+
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--------~~~dlil~D~~mp--~~~g~~--~~~~i 1024 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--------QHYDLLITDVNMP--NMDGFE--LTRKL 1024 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--------CCCCEEEEeCCCC--CCCHHH--HHHHH
Confidence 35689999999999999999999999999999999999877643 4689999987653 222211 11122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+... ...| +++++..............|. +.++.||+....+...+.+...
T Consensus 1025 ~~~~--~~~p-ii~lt~~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1025 REQN--SSLP-IWGLTANAQANEREKGLSCGM-NLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred HhcC--CCCC-EEEEECCCCHHHHHHHHHCCC-CEEEeCCCCHHHHHHHHHHHhh
Confidence 2111 1234 444544444444444444453 5799999999999888877653
|
|
| >PRK15479 transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=11 Score=39.09 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=75.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++|+++.........++..|..+..+.+..++...... ..||++++|..... .+ +. .....++.
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~d~vild~~~~~--~~-~~-~~~~~i~~ 68 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--------EMYALAVLDINMPG--MD-GL-EVLQRLRK 68 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCC--Cc-HH-HHHHHHHh
Confidence 368899999999998899999999999888888887655432 46899999865432 11 11 11122222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|. +++...............| .+.++.||.....+.+.+...+.
T Consensus 69 ~~--~~~~i-i~lt~~~~~~~~~~~~~~g-~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 69 RG--QTLPV-LLLTARSAVADRVKGLNVG-ADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred cC--CCCCE-EEEECCCCHHHHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHh
Confidence 11 12343 4444444444433444444 45799999999998888876654
|
|
| >TIGR01387 cztR_silR_copR heavy metal response regulator | Back alignment and domain information |
|---|
Probab=86.49 E-value=12 Score=38.64 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=75.0
Q ss_pred EEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 784 (1006)
++++|+++.........++..|+.+..+.+..++...+.. ..||++++|..... .+. ...+..++...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~--~~g--~~~~~~l~~~~ 68 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--------DDYDLIILDVMLPG--MDG--WQILQTLRRSG 68 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCH--HHHHHHHHccC
Confidence 4688999999888888999999999989999888776532 46899999865432 111 11222222211
Q ss_pred CcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 785 ~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...| +++++..............| .+.++.||.....+...+...+.
T Consensus 69 --~~~~-iivls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 69 --KQTP-VLFLTARDSVADKVKGLDLG-ADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred --CCCc-EEEEEcCCCHHHHHHHHHcC-CCeEEECCCCHHHHHHHHHHHhc
Confidence 1234 44454444444444444444 45799999999998888877654
|
Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. |
| >PRK14084 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=86.34 E-value=11 Score=40.50 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=72.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcC-C-EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCc-chhHhhhh
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLG-I-MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G-~-~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~-~~~~~~~~ 779 (1006)
++++++|+++.........++.++ + .+..+.+..++...... ..||++++|.++. +.++ .....+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--------~~~dlv~lDi~m~--~~~G~~~~~~i~~ 70 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--------NQYDIIFLDINLM--DESGIELAAKIQK 70 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--------cCCCEEEEeCCCC--CCCHHHHHHHHHh
Confidence 468999999999999999999876 3 46677888888776543 3689999987754 2221 22222221
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
. . ..+.++.++.. ... .......+ ...++.||+....+.+++..+.
T Consensus 71 ~---~---~~~~iI~~t~~-~~~-~~~~~~~~-~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 71 M---K---EPPAIIFATAH-DQF-AVKAFELN-ATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred c---C---CCCEEEEEecC-hHH-HHHHHhcC-CcEEEECCCCHHHHHHHHHHHH
Confidence 1 1 23444444433 222 22222223 4579999999999998887765
|
|
| >PRK10710 DNA-binding transcriptional regulator BaeR; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=19 Score=37.99 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=76.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........++..|+.+..+.+..++...+.. ..||++++|...... + +. .....++.
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~~--~-g~-~~~~~l~~ 78 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--------TPPDLILLDLMLPGT--D-GL-TLCREIRR 78 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCCC--C-HH-HHHHHHHh
Confidence 379999999999999999999999999888898888776532 468999998764321 1 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...| ++++...............| .+.++.||.....+...+...+.
T Consensus 79 ~---~~~p-ii~l~~~~~~~~~~~~~~~g-a~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 79 F---SDIP-IVMVTAKIEEIDRLLGLEIG-ADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred c---CCCC-EEEEEcCCCHHHHHHHHhcC-CCeEEECCCCHHHHHHHHHHHHh
Confidence 1 1344 44444444433333334444 35789999999988887776654
|
|
| >COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=86.01 E-value=14 Score=39.20 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=77.1
Q ss_pred eEEEEcCchhHHHHHHHHHHHcC-CEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcc-hhHhhhhc
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLG-IMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG-FNAQLLDW 780 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G-~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~-~~~~~~~~ 780 (1006)
+++++||.+..+.-.+..|+..+ +.+. .+.+..++..... ..+||++++|..++ +.++- ....+.+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~--------~~~pdvvl~Dl~mP--~~~G~e~~~~l~~~ 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR--------ELKPDVVLLDLSMP--GMDGLEALKQLRAR 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh--------hcCCCEEEEcCCCC--CCChHHHHHHHHHH
Confidence 68999999999999999998877 6644 4455777776533 36899999996543 32222 12222211
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...++++++..............|. +.++.|......+..+++.+..
T Consensus 72 ~------p~~~vvvlt~~~~~~~v~~al~~Ga-~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 72 G------PDIKVVVLTAHDDPAYVIRALRAGA-DGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred C------CCCcEEEEeccCCHHHHHHHHHcCC-CEEEeCCCCHHHHHHHHHHHHC
Confidence 1 1125666666666666655555553 6889999999999999988764
|
|
| >PRK10430 DNA-binding transcriptional activator DcuR; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=14 Score=39.71 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
++++++|+++..+......|... |+.+ ..+++..++....... ...||++++|..+... .+......+..
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~DlvilD~~~p~~-~G~eli~~l~~- 73 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS------DTPIDLILLDIYMQQE-NGLDLLPVLHE- 73 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc------CCCCCEEEEecCCCCC-CcHHHHHHHHh-
Confidence 47899999999999888888864 6654 4667777777655321 2468999998765321 11122222221
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHh
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~ 833 (1006)
.. .. .++++++..............|. +.++.||.....+..++...
T Consensus 74 --~~--~~-~~vI~ls~~~~~~~~~~al~~Ga-~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 74 --AG--CK-SDVIVISSAADAATIKDSLHYGV-VDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred --hC--CC-CCEEEEECCCcHHHHHHHHHcCC-CEEEeCCCCHHHHHHHHHHH
Confidence 11 12 33455555444444444444553 57999999999988888654
|
|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=1 Score=56.43 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEEEEecCCCCChhHHhhhccc--------cc---cCCCCCCCCCCCccccHHHHHHHH
Q 001846 605 MVCVEDTGIGIPLSAQERVFMP--------FM---QADSSTSRHYGGTGIGLSISKCLV 652 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~~~s~s~~~gGtGLGLsI~k~Lv 652 (1006)
.++|+|||+||+.+++..-+-. |. +.......-.|-.|+|..=|-.+.
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 4789999999999886543311 21 111112234577899987664443
|
|
| >PRK09191 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=8.7 Score=41.60 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=72.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
.+++++|+++.........++..|+.+. .+.+..++...... ..+|++++|.+.... .+ +. ..+..++
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--------~~~dlvi~d~~~~~~-~~-g~-e~l~~l~ 206 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--------TRPGLILADIQLADG-SS-GI-DAVNDIL 206 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--------cCCCEEEEecCCCCC-CC-HH-HHHHHHH
Confidence 4689999999999999999999999887 67787877766532 468999999765311 11 11 1122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ..|.+ +++..... .. .....+ ...++.||+....+...+.+.+.
T Consensus 207 ~~~---~~pii-~ls~~~~~-~~-~~~~~~-~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 207 KTF---DVPVI-FITAFPER-LL-TGERPE-PAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred HhC---CCCEE-EEeCCCcH-HH-HHHhcc-cCceEECCCCHHHHHHHHHHHHh
Confidence 211 34443 44332222 11 112222 34679999999999998877653
|
|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
Probab=85.18 E-value=0.94 Score=55.78 Aligned_cols=48 Identities=29% Similarity=0.511 Sum_probs=28.6
Q ss_pred EEEEEecCCCCChhHHh--------hhccccccC---CCCCCC-CCCCccccHHHHHHHH
Q 001846 605 MVCVEDTGIGIPLSAQE--------RVFMPFMQA---DSSTSR-HYGGTGIGLSISKCLV 652 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~s~-~~gGtGLGLsI~k~Lv 652 (1006)
.|+|.|+|.|||.+..+ -+|...... +....+ ..|--|.||+.+..+.
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 38999999999976543 233333211 111111 2234699999888774
|
Eukaryotic DNA topoisomerase II, GyrB, ParE |
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=84.90 E-value=11 Score=44.99 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=77.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..+++++|+++.........++..|+.+..+.+..++...+.. ..+|++++|..+.. .+ ++ ..+..++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--------~~~dlillD~~~p~--~~-g~-~ll~~i~ 71 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--------IHPDVVLMDIRMPE--MD-GI-KALKEMR 71 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-HH-HHHHHHH
Confidence 3579999999999999999999999999999999998876543 46899999876532 11 11 1122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ...|. ++++..............| .+.++.||+....+...+...+.
T Consensus 72 ~~~--~~~pv-I~lt~~~~~~~~~~a~~~G-a~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 72 SHE--TRTPV-ILMTAYAEVETAVEALRCG-AFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred hcC--CCCCE-EEEeCCCCHHHHHHHHHCC-ccEEEecccCHHHHHHHHhhhcc
Confidence 211 13344 4444433333333344444 35689999999888887776553
|
|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.83 Score=56.80 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEEEecCCCCChhHHhhhc
Q 001846 605 MVCVEDTGIGIPLSAQERVF 624 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF 624 (1006)
.+.|.|||+||+++++.+-|
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866544
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=84.82 E-value=3.3 Score=51.71 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred eEEEecCc-HHH-----HHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhh
Q 001846 861 KILVVDDN-GVN-----RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 861 ~ILvVDDn-~~n-----~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~ 934 (1006)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++...+.....++|+.|.+- . ..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK--Y-NLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch--h-hHHHHHHHHHh-----
Confidence 45666555 222 4566778899999999999999999988766668899998522 1 24477777753
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCC
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADV 964 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~ 964 (1006)
...+||+++....
T Consensus 74 -----------------~~~~Pv~~~~~~~ 86 (714)
T PRK15400 74 -----------------NENLPLYAFANTY 86 (714)
T ss_pred -----------------CCCCCEEEEcccc
Confidence 2369999987654
|
|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.3 Score=54.92 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADS 632 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~ 632 (1006)
.|.|.|||+||++++++-.+.++...+-
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 3899999999999999999999976543
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=84.47 E-value=28 Score=34.29 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcCCeEEE---eCCHHHHHHHhcCCCCCcEEEEeCCCCCCC--HHHHHHHHHhhhchhhhhhccCCCC
Q 001846 869 GVNRMVAAGALKKFGATVEC---AASAKAALDKLQSPHCFDACFMDIQMPEMD--GFEATRRIRQMESKANEQMMNGGSS 943 (1006)
Q Consensus 869 ~~n~~~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~e~~~~~~~~~~~~~ 943 (1006)
..-..++..+|+..||+|.. ..+.++.++...+ +.+|+|-+-..|-..- --++.+++|+..
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~g------------- 80 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAG------------- 80 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCC-------------
Confidence 34456788899999999885 4677888888776 5699999887774221 122333444311
Q ss_pred cCCCcccCCCCCcEEEEecCC--CHHh----HHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 944 VDGTAKRDELHLPILAMTADV--IHAT----FDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 944 ~~~~~~~~~~~~PIIalTa~~--~~~~----~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+ .|++-+.. .+++ ..++.++|++......-.++++...|++.++
T Consensus 81 --------l~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 81 --------LEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred --------CCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1123 35555531 2222 3468999999999988889999988888764
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.44 E-value=6.4 Score=37.35 Aligned_cols=117 Identities=18% Similarity=0.288 Sum_probs=81.4
Q ss_pred ccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHH--HHHHhhhchh
Q 001846 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT--RRIRQMESKA 933 (1006)
Q Consensus 856 ~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~--~~IR~~e~~~ 933 (1006)
.+.|++++.||-|.........+|..-|.+|+.-..-.+ + ..+.||.+|+.+-.+--.-...- +-.|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----L-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----c-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 457899999999999999999999999999987554332 3 23559999999877654443321 111111
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHH-HHHHHhc
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR-ELAKFFK 999 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~-~l~~~l~ 999 (1006)
...+--|+++-. ......++..+-|+-+.|.||++...|.. .+..+-.
T Consensus 79 -----------------~mtd~vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~~ 127 (140)
T COG4999 79 -----------------SMTDFVILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFCH 127 (140)
T ss_pred -----------------hhhcceEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhhh
Confidence 011334666543 34556678889999999999999999988 5555544
|
|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=84.30 E-value=3.6 Score=46.68 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEec
Q 001846 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962 (1006)
Q Consensus 883 G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa 962 (1006)
|.++..+.+..++-..+.. -.+|++|..| +-..++... ..+..+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~-------~~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWAR---APLVLVDADM-------AEACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhcccc---CCeEEECchh-------hhHHHhccC---------------------CCCCCEEEEeC
Confidence 5667777777766444332 5789998744 112222211 11233555544
Q ss_pred -CCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 963 -DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 963 -~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
..+.+....++++|+.||+.+|++.++|.+.+.++.
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 556888999999999999999999999999998874
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >PRK10360 DNA-binding transcriptional activator UhpA; Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=13 Score=37.92 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=72.4
Q ss_pred eEEEEcCchhHHHHHHHHHHHc-CCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRL-GIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~-G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
+++++|+++.........+... ++. +..+++..++...... ..||++++|..... .+ +. ..+..++
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--------~~~dlvi~d~~~~~--~~-g~-~~~~~l~ 70 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--------RGVQVCICDISMPD--IS-GL-ELLSQLP 70 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-HH-HHHHHHc
Confidence 6899999999988888888754 554 4567888888766532 46899999875422 11 11 1122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+ .. ++++++..............| .+.++.||.....+..++..++.
T Consensus 71 ~-----~~-~vi~~s~~~~~~~~~~~~~~g-a~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 71 K-----GM-ATIMLSVHDSPALVEQALNAG-ARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred c-----CC-CEEEEECCCCHHHHHHHHHcC-CcEEEECCCCHHHHHHHHHHHHc
Confidence 1 22 344555444444444444444 46799999999999998887764
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=83.14 E-value=11 Score=44.79 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=72.5
Q ss_pred EEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCC-CcchhHhhhhcCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE-DSGFNAQLLDWKPN 783 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~-~~~~~~~~~~~~~~ 783 (1006)
++++|+++.........+ .|+.+..+.+..++...+.. ..||++++|..+..... .......+..++..
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--------~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~ 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--------HEPAVVTLDLGLPPDADGASEGLAALQQILAI 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh
Confidence 478899988888777777 78899999999999887643 46899999876542110 01111112222211
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
....| +++++...+..........| .+.++.||+....+...+...+.
T Consensus 71 --~~~~p-iI~lt~~~~~~~~~~a~~~G-a~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 --APDTK-VIVITGNDDRENAVKAIGLG-AYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred --CCCCC-EEEEecCCCHHHHHHHHHCC-ccEEEeCCCCHHHHHHHHhhhhh
Confidence 12344 44444444444444444455 35789999999998887766553
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=82.31 E-value=9.9 Score=41.06 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=66.4
Q ss_pred ecCcHHHHHHHHHHHhhcCCeEE--EeCCHHHHHHHhcCCCCCcEEEEeCCCC---------CC-CHHHHHHHHHhhhch
Q 001846 865 VDDNGVNRMVAAGALKKFGATVE--CAASAKAALDKLQSPHCFDACFMDIQMP---------EM-DGFEATRRIRQMESK 932 (1006)
Q Consensus 865 VDDn~~n~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~m-dG~e~~~~IR~~e~~ 932 (1006)
..|.....+..+.+. +.|+.|. |++|...|-....- .+++| || +. + .+.++.|++.
T Consensus 106 lpd~~~tv~aa~~L~-~~Gf~vlpyc~dd~~~ar~l~~~--G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~--- 173 (248)
T cd04728 106 LPDPIETLKAAEILV-KEGFTVLPYCTDDPVLAKRLEDA--GCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER--- 173 (248)
T ss_pred ccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHc--CCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---
Confidence 344444444444444 5599876 77777777655443 46777 77 22 3 6778888752
Q ss_pred hhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHHHHHHHH
Q 001846 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV-----SKPFEEENLYRELAK 996 (1006)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~ 996 (1006)
..+|||+=-.-...++..+|++.|+|+++ +|.-++...-++...
T Consensus 174 --------------------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 174 --------------------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred --------------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 25899988888899999999999999995 464445554444443
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.34 E-value=10 Score=45.03 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=76.3
Q ss_pred eEEEEcCchhHHHHHHHHHH--HcCCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 704 KAVVVDEKPVRAAVTQYHLN--RLGIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~--~~G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
+|++|||.+..++-++..+. .+|+.+ ..+++..+|++.... .+||+++.|-.++ +.++--. ...+
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--------~~pDiviTDI~MP--~mdGLdL--I~~i 70 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--------TQPDIVITDINMP--GMDGLDL--IKAI 70 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--------cCCCEEEEecCCC--CCcHHHH--HHHH
Confidence 68999999999988887765 466655 467888999888765 6899999987654 3333211 1122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
+.. ......|+++.--.-+-..++..-| ++.+|.||+....|..+|.++.+.
T Consensus 71 ke~---~p~~~~IILSGy~eFeYak~Am~lG-V~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 71 KEQ---SPDTEFIILSGYDEFEYAKKAMKLG-VKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred HHh---CCCceEEEEeccchhHHHHHHHhcC-chhheeCcCCHHHHHHHHHHHHHH
Confidence 221 1234555665433333333333333 457899999999999999887654
|
|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=81.04 E-value=17 Score=43.65 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++++++.........++.+|+.+..+.+..++...+.. ...||++++|...............+..
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~~d~vi~d~~~~~~~~~~~~~~~l~~ 485 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-------HPEVDLLFTDLIMPGGMNGVMLAREARR 485 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-------CCCceEEEEeccCCCCCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999888876532 1368999998765421111122222221
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. .. +++++++..............+ ...++.||+....+...+...+.
T Consensus 486 ~~-----~~-~~ii~~~~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 486 RQ-----PK-IKVLLTTGYAEASIERTDAGGS-EFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred hC-----CC-CcEEEEcCCCchhhhhhhcccc-CCceeeCCCCHHHHHHHHHHHhc
Confidence 11 12 2344444433333333333333 34689999999999988877654
|
|
| >cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins | Back alignment and domain information |
|---|
Probab=80.83 E-value=17 Score=38.24 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred ceEEEe----cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhh
Q 001846 860 KKILVV----DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEM--DGFEATRRIRQME 930 (1006)
Q Consensus 860 ~~ILvV----DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~e 930 (1006)
.+||+. |-+..=..++..+|+..||+|... ...++.++.+.. ..||+|-+-+.|+.. +-.++.+.+|+..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 478877 777777888999999999998753 356677777765 569999999877654 2234445555421
Q ss_pred chhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
...+++|++=-+-... +-+-+.|+|.|-.
T Consensus 162 --------------------~~~~~~i~vGG~~~~~---~~~~~~GaD~~~~ 190 (201)
T cd02070 162 --------------------LRDKVKVMVGGAPVNQ---EFADEIGADGYAE 190 (201)
T ss_pred --------------------CCcCCeEEEECCcCCH---HHHHHcCCcEEEC
Confidence 1124666655544443 2566779999875
|
A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases. |
| >PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional | Back alignment and domain information |
|---|
Probab=80.62 E-value=23 Score=37.41 Aligned_cols=120 Identities=10% Similarity=0.171 Sum_probs=69.9
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCC---EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGI---MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~---~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
+.++++|+++..+...+..|+..+. .+..+++..++...... ..||++++|.+.+++..+.. ..+..
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--------~~pDlvLlDl~~~l~~~~g~--~~i~~ 70 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--------LRPSVVFINEDCFIHDASNS--QRIKQ 70 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--------cCCCEEEEeCcccCCCCChH--HHHHH
Confidence 3579999999999999999987653 34567888888766532 46899999955222222221 12222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++...+ . .+++++............. .+-...++.|+.....+..++..+...
T Consensus 71 i~~~~p--~-~~iivlt~~~~~~~~~~~~-~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 71 IINQHP--N-TLFIVFMAIANIHFDEYLL-VRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred HHHHCC--C-CeEEEEECCCchhHHHHHH-HHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 222111 1 3445554433322111111 111112568999999999998887753
|
|
| >PRK09935 transcriptional regulator FimZ; Provisional | Back alignment and domain information |
|---|
Probab=80.62 E-value=33 Score=35.08 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+++++++++.........++.. ++.+. .+.+..++...... ..||++++|...... ....+...+.
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~dlvild~~l~~~-~g~~~~~~l~- 72 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--------RPVDLIIMDIDLPGT-DGFTFLKRIK- 72 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCCC-CHHHHHHHHH-
Confidence 357899999999998888888877 57664 56777777665432 468999998764321 1111222222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ...| ++++...............| .+.++.||.....+..++...+.
T Consensus 73 --~~~--~~~~-ii~ls~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 73 --QIQ--STVK-VLFLSSKSECFYAGRAIQAG-ANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred --HhC--CCCc-EEEEECCCcHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHc
Confidence 111 1233 44444443333333333444 45789999999999988877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1006 | ||||
| 3t4j_A | 270 | Arabidopsis Histidine Kinase 4 Sensor Domain In Com | 1e-127 | ||
| 4euk_A | 153 | Crystal Structure Length = 153 | 9e-17 | ||
| 3mm4_A | 206 | Crystal Structure Of The Receiver Domain Of The His | 2e-15 | ||
| 2ayx_A | 254 | Solution Structure Of The E.Coli Rcsc C-Terminus (R | 5e-11 | ||
| 1oxb_B | 134 | Complex Between Ypd1 And Sln1 Response Regulator Do | 1e-10 | ||
| 2r25_B | 133 | Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef | 1e-10 | ||
| 2ayz_A | 133 | Solution Structure Of The E.Coli Rcsc C-Terminus (R | 1e-10 | ||
| 1dcf_A | 136 | Crystal Structure Of The Receiver Domain Of The Eth | 7e-10 | ||
| 3m6m_D | 143 | Crystal Structure Of Rpff Complexed With Rec Domain | 7e-10 | ||
| 3c97_A | 140 | Crystal Structure Of The Response Regulator Receive | 7e-10 | ||
| 3dge_A | 258 | Structure Of A Histidine Kinase-response Regulator | 1e-09 | ||
| 2c2a_A | 258 | Structure Of The Entire Cytoplasmic Portion Of A Se | 1e-09 | ||
| 1ymv_A | 129 | Signal Transduction Protein Chey Mutant With Phe 14 | 7e-09 | ||
| 1ab5_A | 125 | Structure Of Chey Mutant F14n, V21t Length = 125 | 1e-08 | ||
| 1ab6_A | 125 | Structure Of Chey Mutant F14n, V86t Length = 125 | 2e-08 | ||
| 3sl2_A | 177 | Atp Forms A Stable Complex With The Essential Histi | 4e-08 | ||
| 3to5_A | 134 | High Resolution Structure Of Chey3 From Vibrio Chol | 1e-07 | ||
| 1ymu_A | 130 | Signal Transduction Protein Chey Mutant With Met 17 | 1e-07 | ||
| 3ffx_A | 128 | Crystal Structure Of Chey Triple Mutant F14e, N59r, | 2e-07 | ||
| 1cye_A | 129 | Three Dimensional Structure Of Chemotactic Che Y Pr | 2e-07 | ||
| 1mih_A | 129 | A Role For Chey Glu 89 In Chez-Mediated Dephosphory | 2e-07 | ||
| 3myy_A | 128 | Structure Of E. Coli Chey Mutant A113p Bound To Ber | 2e-07 | ||
| 1udr_A | 129 | Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Rep | 2e-07 | ||
| 3fft_A | 128 | Crystal Structure Of Chey Double Mutant F14e, E89r | 2e-07 | ||
| 3oo0_A | 129 | Structure Of Apo Chey A113p Length = 129 | 3e-07 | ||
| 1cey_A | 128 | Assignments, Secondary Structure, Global Fold, And | 3e-07 | ||
| 1djm_A | 129 | Solution Structure Of Bef3-Activated Chey From Esch | 3e-07 | ||
| 3ffw_A | 128 | Crystal Structure Of Chey Triple Mutant F14q, N59k, | 3e-07 | ||
| 1eay_A | 128 | Chey-Binding (P2) Domain Of Chea In Complex With Ch | 3e-07 | ||
| 2che_A | 128 | Structure Of The Mg2+-Bound Form Of Chey And Mechan | 3e-07 | ||
| 2fka_A | 129 | Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Che | 3e-07 | ||
| 1d4z_A | 128 | Crystal Structure Of Chey-95iv, A Hyperactive Chey | 3e-07 | ||
| 3fgz_A | 128 | Crystal Structure Of Chey Triple Mutant F14e, N59m, | 4e-07 | ||
| 1jbe_A | 128 | 1.08 A Structure Of Apo-Chey Reveals Meta-Active Co | 4e-07 | ||
| 3rvj_A | 132 | Structure Of The Chey-Bef3 Complex With Substitutio | 5e-07 | ||
| 2chy_A | 128 | Three-Dimensional Structure Of Chey, The Response R | 5e-07 | ||
| 3f7n_A | 128 | Crystal Structure Of Chey Triple Mutant F14e, N59m, | 5e-07 | ||
| 3olx_A | 129 | Structural And Functional Effects Of Substitution A | 6e-07 | ||
| 5chy_A | 128 | Structure Of Chemotaxis Protein Chey Length = 128 | 6e-07 | ||
| 3rvp_A | 132 | Structure Of The Chey-Bef3 Complex With Substitutio | 7e-07 | ||
| 3olw_A | 129 | Structural And Functional Effects Of Substitution A | 7e-07 | ||
| 3olv_A | 129 | Structural And Functional Effects Of Substitution A | 8e-07 | ||
| 3rvl_A | 132 | Structure Of The Chey-Bef3 Complex With Substitutio | 9e-07 | ||
| 1hey_A | 128 | Investigating The Structural Determinants Of The P2 | 9e-07 | ||
| 3oly_A | 129 | Structural And Functional Effects Of Substitution A | 1e-06 | ||
| 3rvn_A | 132 | Structure Of The Chey-Bef3 Complex With Substitutio | 1e-06 | ||
| 1vlz_A | 128 | Uncoupled Phosphorylation And Activation In Bacteri | 1e-06 | ||
| 1ehc_A | 128 | Structure Of Signal Transduction Protein Chey Lengt | 2e-06 | ||
| 1zdm_A | 129 | Crystal Structure Of Activated Chey Bound To Xe Len | 2e-06 | ||
| 3dge_C | 122 | Structure Of A Histidine Kinase-response Regulator | 2e-06 | ||
| 1c4w_A | 128 | 1.9 A Structure Of A-Thiophosphonate Modified Chey | 2e-06 | ||
| 1nxo_A | 120 | Micarec Ph7.0 Length = 120 | 2e-06 | ||
| 1e6k_A | 130 | Two-Component Signal Transduction System D12a Mutan | 2e-06 | ||
| 1e6m_A | 128 | Two-Component Signal Transduction System D57a Mutan | 2e-06 | ||
| 1e6l_A | 127 | Two-Component Signal Transduction System D13a Mutan | 2e-06 | ||
| 6chy_A | 128 | Structure Of Chemotaxis Protein Chey Length = 128 | 3e-06 | ||
| 4ew8_A | 268 | Crystal Structure Of A C-Terminal Part Of Tyrosine | 3e-06 | ||
| 3h5i_A | 140 | Crystal Structure Of The N-Terminal Domain Of A Res | 7e-06 | ||
| 2id7_A | 128 | 1.75 A Structure Of T87i Phosphono-Chey Length = 12 | 9e-06 | ||
| 1mvo_A | 136 | Crystal Structure Of The Phop Receiver Domain From | 1e-05 | ||
| 2pkx_A | 121 | E.Coli Response Regulator Phop Receiver Domain Leng | 1e-05 | ||
| 3gl9_A | 122 | The Structure Of A Histidine Kinase-Response Regula | 1e-05 | ||
| 1nxt_A | 120 | Micarec Ph 4.0 Length = 120 | 1e-05 | ||
| 1m5t_A | 124 | Crystal Structure Of The Response Regulator Divk Le | 2e-05 | ||
| 2id9_A | 128 | 1.85 A Structure Of T87iY106W PHOSPHONO-Chey Length | 2e-05 | ||
| 3h1g_A | 129 | Crystal Structure Of Chey Mutant T84a Of Helicobact | 3e-05 | ||
| 1r62_A | 160 | Crystal Structure Of The C-terminal Domain Of The T | 5e-05 | ||
| 3tmy_A | 120 | Chey From Thermotoga Maritima (Mn-Iii) Length = 120 | 5e-05 | ||
| 3gwg_A | 129 | Crystal Structure Of Chey Of Helicobacter Pylori Le | 9e-05 | ||
| 3f6p_A | 120 | Crystal Structure Of Unphosphorelated Receiver Doma | 9e-05 | ||
| 2zwm_A | 130 | Crystal Structure Of Yycf Receiver Domain From Baci | 9e-05 | ||
| 1u0s_Y | 118 | Chemotaxis Kinase Chea P2 Domain In Complex With Re | 1e-04 | ||
| 3a0r_A | 349 | Crystal Structure Of Histidine Kinase Thka (Tm1359) | 1e-04 | ||
| 1u8t_A | 128 | Crystal Structure Of Chey D13k Y106w Alone And In C | 2e-04 | ||
| 3eod_A | 130 | Crystal Structure Of N-Terminal Domain Of E. Coli R | 2e-04 | ||
| 3sy8_A | 400 | Crystal Structure Of The Response Regulator Rocr Le | 5e-04 | ||
| 3eq2_A | 394 | Structure Of Hexagonal Crystal Form Of Pseudomonas | 6e-04 | ||
| 3f7a_A | 394 | Structure Of Orthorhombic Crystal Form Of Pseudomon | 7e-04 | ||
| 3h1f_A | 129 | Crystal Structure Of Chey Mutant D53a Of Helicobact | 7e-04 |
| >pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex With N- Isopentenyl Adenine Length = 270 | Back alignment and structure |
|
| >pdb|4EUK|A Chain A, Crystal Structure Length = 153 | Back alignment and structure |
|
| >pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine Kinase Cki1 From Arabidopsis Thaliana Length = 206 | Back alignment and structure |
|
| >pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 | Back alignment and structure |
|
| >pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In Space Group P2(1)2(1)2(1) Length = 134 | Back alignment and structure |
|
| >pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3- Length = 133 | Back alignment and structure |
|
| >pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 | Back alignment and structure |
|
| >pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene Receptor Of Arabidopsis Thaliana Length = 136 | Back alignment and structure |
|
| >pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 143 | Back alignment and structure |
|
| >pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain Of A Signal Transduction Histidine Kinase From Aspergillus Oryzae Length = 140 | Back alignment and structure |
|
| >pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 | Back alignment and structure |
|
| >pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 | Back alignment and structure |
|
| >pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly Length = 129 | Back alignment and structure |
|
| >pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t Length = 125 | Back alignment and structure |
|
| >pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t Length = 125 | Back alignment and structure |
|
| >pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 | Back alignment and structure |
|
| >pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae Length = 134 | Back alignment and structure |
|
| >pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced By Gly (M17g) Length = 130 | Back alignment and structure |
|
| >pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
|
| >pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In Aqueous Solution By Nuclear Magnetic Resonance Methods Length = 129 | Back alignment and structure |
|
| >pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of The E. Coli Chemotaxis Response Regulator Chey Length = 129 | Back alignment and structure |
|
| >pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium Fluoride Length = 128 | Back alignment and structure |
|
| >pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu (Stabilizing Mutations In Helix 4) Length = 129 | Back alignment and structure |
|
| >pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
|
| >pdb|3OO0|A Chain A, Structure Of Apo Chey A113p Length = 129 | Back alignment and structure |
|
| >pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics Of Chemotaxis Y Protein Using Three-And Four-Dimensional Heteronuclear (13c,15n) Nmr Spectroscopy Length = 128 | Back alignment and structure |
|
| >pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia Coli Length = 129 | Back alignment and structure |
|
| >pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
|
| >pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From Escherichia Coli Length = 128 | Back alignment and structure |
|
| >pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of Phosphoryl Transfer In Bacterial Chemotaxis Length = 128 | Back alignment and structure |
|
| >pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In Complex With Chez(200-214) Solved From A F432 Crystal Grown In Caps (Ph 10.5) Length = 129 | Back alignment and structure |
|
| >pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant Length = 128 | Back alignment and structure |
|
| >pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
|
| >pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active Conformation Length = 128 | Back alignment and structure |
|
| >pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59 And 89: N59d And E89q Length = 132 | Back alignment and structure |
|
| >pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator Of Bacterial Chemotaxis Length = 128 | Back alignment and structure |
|
| >pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l Complexed With Bef3- And Mn2+ Length = 128 | Back alignment and structure |
|
| >pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At Position T+1 In Chey: Cheya88s-Bef3-Mn Complex Length = 129 | Back alignment and structure |
|
| >pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey Length = 128 | Back alignment and structure |
|
| >pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59 And 89: N59d And E89k Length = 132 | Back alignment and structure |
|
| >pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At Position T+1 In Chey: Cheya88t-Bef3-Mn Complex Length = 129 | Back alignment and structure |
|
| >pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At Position T+1 In Chey: Cheya88v-Bef3-Mg Complex Length = 129 | Back alignment and structure |
|
| >pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59 And 89: N59d And E89r Length = 132 | Back alignment and structure |
|
| >pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like Triphosphate And Mg2+ Binding Site Length = 128 | Back alignment and structure |
|
| >pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At Position T+1 In Chey: Cheya88m-Bef3-Mn Complex Length = 129 | Back alignment and structure |
|
| >pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59 And 89: N59d And E89y Length = 132 | Back alignment and structure |
|
| >pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To Isoleucine Mutant At Position 87 Of Chey Length = 128 | Back alignment and structure |
|
| >pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey Length = 128 | Back alignment and structure |
|
| >pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe Length = 129 | Back alignment and structure |
|
| >pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 122 | Back alignment and structure |
|
| >pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c Length = 128 | Back alignment and structure |
|
| >pdb|1NXO|A Chain A, Micarec Ph7.0 Length = 120 | Back alignment and structure |
|
| >pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey Length = 130 | Back alignment and structure |
|
| >pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey Length = 128 | Back alignment and structure |
|
| >pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey Length = 127 | Back alignment and structure |
|
| >pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey Length = 128 | Back alignment and structure |
|
| >pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 | Back alignment and structure |
|
| >pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response RegulatorSENSORY BOXGGDEF 3-Domain Protein From Carboxydothermus Hydrogenoformans Length = 140 | Back alignment and structure |
|
| >pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey Length = 128 | Back alignment and structure |
|
| >pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 | Back alignment and structure |
|
| >pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain Length = 121 | Back alignment and structure |
|
| >pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism Length = 122 | Back alignment and structure |
|
| >pdb|1NXT|A Chain A, Micarec Ph 4.0 Length = 120 | Back alignment and structure |
|
| >pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk Length = 124 | Back alignment and structure |
|
| >pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey Length = 128 | Back alignment and structure |
|
| >pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori Length = 129 | Back alignment and structure |
|
| >pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The Two-component System Transmitter Protein Nrii (ntrb) Length = 160 | Back alignment and structure |
|
| >pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii) Length = 120 | Back alignment and structure |
|
| >pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori Length = 129 | Back alignment and structure |
|
| >pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 | Back alignment and structure |
|
| >pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 | Back alignment and structure |
|
| >pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response Regulator Chey From The Thermophile Thermotoga Maritima Length = 118 | Back alignment and structure |
|
| >pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 | Back alignment and structure |
|
| >pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex With A Flim Peptide Length = 128 | Back alignment and structure |
|
| >pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb Length = 130 | Back alignment and structure |
|
| >pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr Length = 400 | Back alignment and structure |
|
| >pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 | Back alignment and structure |
|
| >pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 | Back alignment and structure |
|
| >pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori Length = 129 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A* Length = 270 | Back alignment and structure |
|---|
Score = 307 bits (786), Expect = 2e-97
Identities = 213/270 (78%), Positives = 240/270 (88%), Gaps = 1/270 (0%)
Query: 59 MDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFA 118
MD+ NKIRR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFA
Sbjct: 1 MDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFA 60
Query: 119 EYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS-EPSPIRDEYAPVMFYQ 177
EYT RTAFERPLLSGVAYA +VV+ +RE FERQH I TM EPSP+RDEYAPV+F Q
Sbjct: 61 EYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQ 120
Query: 178 EPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPR 237
+ +S+++SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP
Sbjct: 121 DSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPEN 180
Query: 238 STVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQD 297
TVEERI ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++
Sbjct: 181 PTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEE 240
Query: 298 GDMSLLHESELDFGDSFRKHKMICRYHQKA 327
D SL HES+LDFGD FRKHKMICRYHQKA
Sbjct: 241 ADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 5e-56
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 3/165 (1%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD-LSSTQRDYAQTAQIC 426
+ + A+ K F+ VS+E+RTP+ I+G LL D +S R++ +
Sbjct: 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAA 85
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L I++VLD A+I+A ++ LE + +L + + ++ G+ LAV +
Sbjct: 86 ATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEED 145
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMV 530
V + GD R Q + +LV N+++ T G + + A +
Sbjct: 146 VGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVR 189
|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 9e-23
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ + V DTG G+P Q +F F R GG G+GL++ K LVEL G +
Sbjct: 184 ALGEVRLDVSDTGRGVPFHVQAHIFDRF------VGRDRGGPGLGLALVKALVELHGGWV 237
Query: 660 SFVSRPQVGSTFSFT 674
+ S P GSTF+
Sbjct: 238 ALESEPGNGSTFTCH 252
|
| >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 5e-51
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
H G K+LV+D+NGV+RMV G L G V +S + L + FMD+
Sbjct: 1 HMSNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--HKVVFMDV 58
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
MP ++ ++ RI + +K Q ++A++ + +T ++C
Sbjct: 59 CMPGVENYQIALRIHEKFTKQRHQ-----------------RPLLVALSGNTDKSTKEKC 101
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
+ G+DG + KP +N+ L+ + + L
Sbjct: 102 MSFGLDGVLLKPVSLDNIRDVLSDLLEPRVLYEG 135
|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 1e-47
Identities = 36/154 (23%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT---DLSSTQRDYAQTAQICGKAL 430
R + D K++F+A +SHE+RTP+ I + ++ ST +++ + L
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHL 71
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
L+NE+LD +++E + L++ +L +++ ++ E + + + + + P
Sbjct: 72 ENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVE 131
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
DP R RQ++ NL+ N VK++++ V +
Sbjct: 132 AYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKV 165
|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 7e-28
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+D +++ VED GIGIP A++R+F F + DSS + GTG+GL+I+K +VEL G+I
Sbjct: 170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRI 229
Query: 660 SFVSRPQVGSTFSFT 674
S GS F
Sbjct: 230 WVESEVGKGSRFFVW 244
|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 2e-46
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 19/150 (12%)
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
H+ +R ++LV DD+ NRMV L+K G V C A+ LD + +DA +D+
Sbjct: 8 HRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-EDYDAVIVDL 66
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
MP M+G + +++R M++ + P++ ++ADV C
Sbjct: 67 HMPGMNGLDMLKQLRVMQASGMR------------------YTPVVVLSADVTPEAIRAC 108
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+ G +++KP L LA S
Sbjct: 109 EQAGARAFLAKPVVAAKLLDTLADLAVSTR 138
|
| >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-43
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 21/146 (14%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +L+ +DN + R+VAA AL+K + + AL Q+ FD MDIQMP
Sbjct: 8 IMPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPV 66
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG EA IR E N + I+A+TA D+
Sbjct: 67 MDGLEAVSEIRNYERTHNTK-----------------RASIIAITA---DTIDDDRPGAE 106
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+D YVSKP L +
Sbjct: 107 LDEYVSKPLNPNQLRDVVLTCHSEGA 132
|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-42
Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 40/165 (24%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQ------------SPH 903
LRGK++LVVDDN ++R VA G LKK G + VE S K AL +
Sbjct: 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKL 118
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
FD FMD QMPEMDG+EATR IR++E K + PI+A++
Sbjct: 119 PFDYIFMDCQMPEMDGYEATREIRKVE------------------KSYGVRTPIIAVSG- 159
Query: 964 VIHATFDE----CLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
H E ++ GMD ++ K + L + + + L
Sbjct: 160 --HDPGSEEARETIQAGMDAFLDKSLNQ--LANVIREIESKRHLE 200
|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 4e-42
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 21/143 (14%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KK+L+V+DN +N + L+ G +AL + + D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E T+ +++ + A H+P++A+TA + + + G +
Sbjct: 61 LEVTKWLKEDDDLA--------------------HIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 980 YVSKPFEEENLYRELAKFFKSKP 1002
Y+SKP + + + + +P
Sbjct: 101 YISKPISVVHFLETIKRLLERQP 123
|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 28/206 (13%)
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
++ +KA + P A L ++ E + +
Sbjct: 67 VVTFCRRHIGIPLEKAPGEWV--HSVAAPHELP---ALLARIYLIEMESDDPANALPSTD 121
Query: 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
ILVVDD+ +NR + A L G + A AL+ L + D D
Sbjct: 122 KAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLSD 180
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+ MP MDG+ T+RIRQ+ LP++ +TA+ +
Sbjct: 181 VNMPNMDGYRLTQRIRQLGL----------------------TLPVIGVTANALAEEKQR 218
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKF 997
CL+ GMD +SKP + + + L +
Sbjct: 219 CLESGMDSCLSKPVTLDVIKQTLTLY 244
|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 16/148 (10%)
Query: 604 LMVCVEDTGIGIPLSA-QERVFMPFMQADSSTSRHYGGTGIGLSISK----CLVELMRGQ 658
L ++ +GI + QE + D S+ + G + + L +
Sbjct: 27 LETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEW 86
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ V+ P + + + S + + + +VVD+ P+ +
Sbjct: 87 VHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDN-DDMMILVVDDHPINRRLL 145
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGL 746
L LG TA +G+
Sbjct: 146 ADQLGSLGYQC----------KTANDGV 163
|
| >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-41
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQ----SPHCFDACFMDIQ 913
KILVV+DN VN+ V L G +E A + A DK++ ++ FMD+Q
Sbjct: 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 61
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MP++DG +T+ IR+ PI+A+TA + ECL
Sbjct: 62 MPKVDGLLSTKMIRRDLGY---------------------TSPIVALTAFADDSNIKECL 100
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+ GM+G++SKP + L L +F +
Sbjct: 101 ESGMNGFLSKPIKRPKLKTILTEFCAAYQ 129
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} Length = 144 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-40
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 28/147 (19%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
LR K++LVV+DN + + L + +E + AL ++Q +D +DI +
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-AKYDLIILDIGL 61
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
P +GFE +R+ + H PI+ +T +V +C+
Sbjct: 62 PIANGFEVMSAVRKPGANQ--------------------HTPIVILTDNVSDDRAKQCMA 101
Query: 975 CGMDGYVSKPFE-----EENLYRELAK 996
G V K +Y +
Sbjct: 102 AGASSVVDKSSNNVTDFYGRIYAIFSY 128
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 7e-39
Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 777 LLDWK-PNGHVFKL--------PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
L+D P+ + +++L +IS+D+ + G D +MK R S
Sbjct: 53 LVDLTLPDAPSGEAVKVLLERGLPVVILTADISEDKREAWLEAGVLD-YVMKDSRHS--- 108
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
LQ + ++ + ++LVVDD+ +R L+K V
Sbjct: 109 --LQYAVGLVHRLYL--------------NQQIEVLVVDDSRTSRHRTMAQLRKQLLQVH 152
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A+ A+ AL L+ +D MPE+DG R +R+ SK
Sbjct: 153 EASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQ-------------- 198
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
L I+ ++ LK G + ++++PFE E L ++
Sbjct: 199 ------QLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSH 241
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-21
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 25/136 (18%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
+ +KIL+V+D+ R + A+ + A Q + +D+ +P
Sbjct: 1 MSLKQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGARHCQG-DEYVVALVDLTLP 59
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
+ EA + + + LP++ +TAD+ + L+
Sbjct: 60 DAPSGEAVKVLLER------------------------GLPVVILTADISEDKREAWLEA 95
Query: 976 GMDGYVSKPFEEENLY 991
G+ YV K Y
Sbjct: 96 GVLDYVMKDSRHSLQY 111
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-38
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 26/142 (18%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ ++ L+V+D L+ G + S AL + + +DA F+D+ +P+
Sbjct: 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-RGYDAVFIDLNLPD 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD--ECLK 974
G +++R + + +A++ A D +
Sbjct: 60 TSGLALVKQLRALPMEK--------------------TSKFVAVSG---FAKNDLGKEAC 96
Query: 975 CGMDGYVSKPFEEENLYRELAK 996
D Y+ KP + +L L
Sbjct: 97 ELFDFYLEKPIDIASLEPILQS 118
|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Length = 146 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-28
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 33/156 (21%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQ----SPHCFDACFMD 911
+ +L++DD+ + + ++ ++ S AA++KL + +D
Sbjct: 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICID 67
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIH 966
I MP ++G+E +Q + +++ D
Sbjct: 68 INMPGINGWELIDLFKQHFQPMKN------------------KSIVCLLSSSLDPRDQAK 109
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
A +D YVSKP L K
Sbjct: 110 A----EASDWVDYYVSKPLTANALNNLYNKVLNEGH 141
|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 7e-28
Identities = 38/325 (11%), Positives = 86/325 (26%), Gaps = 53/325 (16%)
Query: 357 HIVKVEDDF-HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGIL-----GMLALLLDT 410
I+ V + + Q+L D A + ++ ++ G+
Sbjct: 91 TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI 150
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
+ R + + L L + + + + + + I++ +
Sbjct: 151 EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR 210
Query: 471 KSRNK-GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
+K G V ++ V P I+ L+ N+++ T H+ ++ + +
Sbjct: 211 LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 270
Query: 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
+ + ++ + G G+ D D +A S
Sbjct: 271 TIANNDVDLIIR------ISDRG-------GGIAHKDLDRVMDYHFTTAEASTQDPRIS- 316
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+F S G G GL S+
Sbjct: 317 --------------------------------PLFGHLDMHSGGQSGPMHGFGFGLPTSR 344
Query: 650 CLVELMRGQISFVSRPQVGSTFSFT 674
E + G + S +G+
Sbjct: 345 AYAEYLGGSLQLQSLQGIGTDVYLR 369
|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-24
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
E+ L + V+D GIGIP E+VF F + D + +R GGTG+GL+I+K +V+ G
Sbjct: 73 EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGD 132
Query: 659 ISFVSRPQVGSTFSFT 674
I S G+T +FT
Sbjct: 133 IWADSIEGKGTTITFT 148
|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 14/73 (19%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-E 514
+ + ++ F E ++ + +E + D+ +V D + Q++ N++ N++K++ E
Sbjct: 4 QIVRFMSLIIDRF-EMTKEQHVEFIRNLPDRDL-YVEIDQDKITQVLDNIISNALKYSPE 61
Query: 515 RGHIFVKVHLAER 527
GH+ + + E
Sbjct: 62 GGHVTFSIDVNEE 74
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 4e-23
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE- 916
+ KKIL+V+D+ A L K+G TVE A + +AA++K+ D MDI++ E
Sbjct: 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEG 63
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I+Q LP++ +TA A ++
Sbjct: 64 MDGVQTALAIQQ-----------------------ISELPVVFLTAHTEPAVVEKIRSVT 100
Query: 977 MDGYVSKPFEEENLY 991
GYV K E+ L
Sbjct: 101 AYGYVMKSATEQVLI 115
|
| >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Length = 143 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 5e-23
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 37/145 (25%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQSPHCFDAC-----FM 910
IL ++D+ V+ K + +E A S ALD L + + +
Sbjct: 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILL 65
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVI 965
DI +P+M+G E + +R S + + +TA D +
Sbjct: 66 DINIPKMNGIEFLKELRDDSSFT--------------------DIEVFVLTAAYTSKDKL 105
Query: 966 HATFDECLKCGMDGYVSKPFEEENL 990
+ G++ KP +
Sbjct: 106 -----AFESLNIRGHLIKPLDYGEA 125
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 5e-23
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 28/137 (20%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+IL+ +D+ + L+K G + SA AL+++ + A +D+ +P+ DG
Sbjct: 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-YAAMTVDLNLPDQDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA--DVIHATFDECLKCGM 977
R +R+ L I+ ++A F +
Sbjct: 66 VSLIRALRRDSRTR--------------------DLAIVVVSANAREGELEF-NSQPLAV 104
Query: 978 DGYVSKPFEEENLYREL 994
++ KP +E L
Sbjct: 105 STWLEKPIDE----NLL 117
|
| >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Length = 128 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-22
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ K LVVDD R + LK+ G VE A AL+KLQ+ + D MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPN 61
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG E + IR + + LP+L +TA+ + G
Sbjct: 62 MDGLELLKTIRAXXAMS--------------------ALPVLMVTAEAKKENIIAAAQAG 101
Query: 977 MDGYVSKPFEEENLYRELAKFFK 999
GYV KPF L +L K F+
Sbjct: 102 ASGYVVKPFTAATLEEKLNKIFE 124
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} Length = 136 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 3e-22
Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 27/134 (20%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+LVVDDN VNR LK G A A+ A L D++M G
Sbjct: 8 PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESG 67
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
+ R IR + L I+ ++ + + + G
Sbjct: 68 LDLIRTIR---------------------ASERAALSIIVVSG---DTDVEEAVDVMHLG 103
Query: 977 MDGYVSKPFEEENL 990
+ ++ KP + L
Sbjct: 104 VVDFLLKPVDLGKL 117
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 1e-21
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 29/146 (19%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
KIL+V+D+ R + + V A + H D DI+MP++
Sbjct: 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-HAPDVIITDIRMPKLG 65
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKC 975
G E RI+ + ++ ++A + + ++
Sbjct: 66 GLEMLDRIKAGGA----------------------KPYVIVISA---FSEMKYFIKAIEL 100
Query: 976 GMDGYVSKPFEEENLYRELAKFFKSK 1001
G+ ++ KP E L L F K
Sbjct: 101 GVHLFLPKPIEPGRLMETLEDFRHIK 126
|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-21
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 358 IVKVED--DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL-DTDLSS 414
I+ ++D + +K +E + R E + + A V+HEIR P+ I G + + D
Sbjct: 107 IITIDDVTELYKYEEERKRRERLSIL-GEMTARVAHEIRNPITIIGGFIMRMKKHLDDPE 165
Query: 415 TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
T + Y L ++ E+L+ +K + LE NL ++ +V LF EK R
Sbjct: 166 TLKKYINIITNELSRLETIVKEILEYSKER-QVLEFTEF--NLNELIREVYVLFEEKIRK 222
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAE 526
I+ ++ V D R +Q++ NLV N+++ T E G I +
Sbjct: 223 MNIDFCFETDNEDLR-VEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY 274
|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM-RGQISFVSR 664
V V ++G IP +E++F PF + GTG+GLSI + ++E G+I +R
Sbjct: 279 VSVWNSGPPIPEELKEKIFSPFF------TTKTQGTGLGLSICRKIIEDEHGGKIWTENR 332
Query: 665 PQVGSTFSFT 674
G F F
Sbjct: 333 EN-GVVFIFE 341
|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 5e-21
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+KIL+VDD R++ K G AA+ ALD + D +D+++P MDG
Sbjct: 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-ERPDLVLLDMKIPGMDG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
E +R++ ++ ++ ++ MTA + D E + G
Sbjct: 63 IEILKRMKVIDE----------------------NIRVIIMTA---YGELDMIQESKELG 97
Query: 977 MDGYVSKPFEEENL 990
+ +KPF+ + +
Sbjct: 98 ALTHFAKPFDIDEI 111
|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 9e-21
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDD N + L V A AL D +D+ MP MDGF
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-DLPDIILLDVMMPGMDGF 61
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R+++ + H+P++ +TA + L+ G +
Sbjct: 62 TVCRKLKDDPTTR--------------------HIPVVLITALDGRGDRIQGLESGASDF 101
Query: 981 VSKPFEEENL 990
++KP ++ L
Sbjct: 102 LTKPIDDVML 111
|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 7e-18
Identities = 51/296 (17%), Positives = 93/296 (31%), Gaps = 49/296 (16%)
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
VVD+ + + L V + A + A + PDIIL++ +
Sbjct: 6 VVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA--------RDLPDIILLD---VM 54
Query: 767 SGEDSGFNA--QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
GF +L D H+ ++L+ + + + G A + KP+
Sbjct: 55 MPGMDGFTVCRKLKDDPTTRHIP----VVLITALDGRGDRIQGLESG-ASDFLTKPIDDV 109
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK--------KILVVDDNGVNRMVAA 876
M+ A ++ + + R + ++L+VDDN A
Sbjct: 110 MLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVA 169
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L V + KA + D ++ DG T +R E
Sbjct: 170 AELGVEHRPVIESDPEKAKISAGGPV---DLVIVNAAAKNFDGLRFTAALRSEERTR--- 223
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
LP+LAM + L+ G++ +S+P + + L
Sbjct: 224 -----------------QLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSA 262
|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Length = 129 | Back alignment and structure |
|---|
Score = 87.9 bits (219), Expect = 1e-20
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 31/142 (21%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQ 913
G L K+LVVDD+ R + L + G V A A +KL + D
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN 60
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHAT 968
MPEM+G + +++R +PI+ +TA +VI A
Sbjct: 61 MPEMNGLDLVKKVRSDSRFK--------------------EIPIIMITAEGGKAEVITA- 99
Query: 969 FDECLKCGMDGYVSKPFEEENL 990
LK G++ Y+ KPF + L
Sbjct: 100 ----LKAGVNNYIVKPFTPQVL 117
|
| >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 6e-20
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 32/137 (23%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+L+VDD +R++ AL++ G + A + + + + D MP+MD
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-NPHHLVISDFNMPKMD 65
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECL 973
G + +R + + +TA V A
Sbjct: 66 GLGLLQAVRANPATK--------------------KAAFIILTAQGDRALVQKA-----A 100
Query: 974 KCGMDGYVSKPFEEENL 990
G + ++KPF E +
Sbjct: 101 ALGANNVLAKPFTIEKM 117
|
| >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Length = 394 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 9e-20
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
+L++DD+ V R A L+ V A + L +S D D++MP++
Sbjct: 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ-PDLVICDLRMPQI 62
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG E RRIRQ S PI+ ++ + + E L+ G
Sbjct: 63 DGLELIRRIRQTAS----------------------ETPIIVLSGAGVMSDAVEALRLGA 100
Query: 978 DGYVSKPFEEENLYR 992
Y+ KP E+ +
Sbjct: 101 ADYLIKPLEDLAVLE 115
|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-19
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 44/158 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGAT--VECAASAKAALDKLQSPHCFDAC--------- 908
+ +LVV+D+ + L++ G + + ALD L +
Sbjct: 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVI 66
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----D 963
+D+ +P DG E + I+Q E +P++ MT D
Sbjct: 67 LLDLNLPGTDGREVLQEIKQDEVLK--------------------KIPVVIMTTSSNPKD 106
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLY---RELAKFF 998
+ C + Y+ KP E + L + K++
Sbjct: 107 IE-----ICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 6e-19
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 29/147 (19%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K++LVVDD + L++ G + A + + A K++ F +D+ MP+ DG
Sbjct: 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-LFFPVIVLDVWMPDGDG 59
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
I++ ++ +T H + D + +K G
Sbjct: 60 VNFIDFIKENSP----------------------DSVVIVITG---HGSVDTAVKAIKKG 94
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKPL 1003
++ KPF E + F+
Sbjct: 95 AYEFLEKPFSVERFLLTIKHAFEEYSK 121
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-19
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 26/134 (19%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQM-PEM 917
+L+V+D + L+ G + + + A+ D +DI + +
Sbjct: 10 PGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD-LRPDIALVDIMLCGAL 68
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG E R+ +LPI+ +T+ TF +
Sbjct: 69 DGVETAARLAA-----------------------GCNLPIIFITSSQDVETFQRAKRVNP 105
Query: 978 DGYVSKPFEEENLY 991
GY++KP + L+
Sbjct: 106 FGYLAKPVAADTLH 119
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-19
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 36/143 (25%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK+IL+V+D V R + GAT AA AL+ L D DI MP
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPR 63
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDE 971
M+G + IR P+L ++A D+ A
Sbjct: 64 MNGLKLLEHIRNRGD----------------------QTPVLVISATENMADIAKA---- 97
Query: 972 CLKCGMDGYVSKPFEEENLYREL 994
L+ G++ + KP ++ L
Sbjct: 98 -LRLGVEDVLLKPVKD---LNRL 116
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-18
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 30/134 (22%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++VVD++ + + AL+K G V A + + A L+ D F+D+ +
Sbjct: 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-EKIDLVFVDV-FEGEES 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
RRIR+ + ++A + D +K G
Sbjct: 63 LNLIRRIREEFP----------------------DTKVAVLSA---YVDKDLIINSVKAG 97
Query: 977 MDGYVSKPFEEENL 990
Y+ KPF + L
Sbjct: 98 AVDYILKPFRLDYL 111
|
| >3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Length = 358 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 22/131 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKK-FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+L+VDD + +L G + + A+ D+ MP +DG
Sbjct: 20 MVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK-PTVILQDLVMPGVDG 78
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
R + +PI+ ++ G +
Sbjct: 79 LTLLAAYRGNPATR--------------------DIPIIVLSTKEEPTVKSAAFAAGAND 118
Query: 980 YVSKPFEEENL 990
Y+ K + L
Sbjct: 119 YLVKLPDAIEL 129
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Length = 140 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-18
Identities = 23/133 (17%), Positives = 35/133 (26%), Gaps = 32/133 (24%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGA-TVECAASAKAALDKLQSPHCFDACFMDIQMP-EM 917
+L++D R G + K + MDI P E
Sbjct: 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEK 64
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDEC 972
+G E IR A + P++ T A
Sbjct: 65 EGLEVLSAIRNNSRTA--------------------NTPVIIATKSDNPGYRHAA----- 99
Query: 973 LKCGMDGYVSKPF 985
LK + Y+ KP+
Sbjct: 100 LKFKVSDYILKPY 112
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Length = 387 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 6e-18
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+LV++D+ V R + L G VE A K A L F+ +D+ +P+++G
Sbjct: 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-KHFNVVLLDLLLPDVNGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCGM 977
E + I++ ++ +T H T E +K G
Sbjct: 61 EILKWIKERSP----------------------ETEVIVITG---HGTIKTAVEAMKMGA 95
Query: 978 DGYVSKPFEEENLYRELAKFFKSKPL 1003
+++KP E + + K + + L
Sbjct: 96 YDFLTKPCMLEEIELTINKAIEHRKL 121
|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 7e-18
Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 29/134 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++L+V+D+ ++ +K + + + A+ ++ +D+++P+M G
Sbjct: 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-SKPQLIILDLKLPDMSG 63
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
+ I Q +++ ++ TA H + D ++ G
Sbjct: 64 EDVLDWINQ----------------------NDIPTSVIIATA---HGSVDLAVNLIQKG 98
Query: 977 MDGYVSKPFEEENL 990
+ ++ KP + L
Sbjct: 99 AEDFLEKPINADRL 112
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Length = 143 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-17
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 33/138 (23%)
Query: 860 KKILVVDDNGVNRMVAAGALKKF--GATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
IL+++D+ + L+ A ++ A + A D L + D +D+ M M
Sbjct: 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-VKPDVVMLDLMMVGM 67
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDEC 972
DGF RI K+ TA ++ ++AMT +V
Sbjct: 68 DGFSICHRI-----KSTPA----------TA-----NIIVIAMTGALTDDNVS-----RI 102
Query: 973 LKCGMDGYVSKPFEEENL 990
+ G + KP L
Sbjct: 103 VALGAETCFGKPLNFTLL 120
|
| >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-17
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 29/133 (21%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ VVDD+ R V AL G T + L L S D DI+MP MDG
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDGL 63
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCGM 977
++I+Q LP++ MTA H+ D + G
Sbjct: 64 ALLKQIKQRHP----------------------MLPVIIMTA---HSDLDAAVSAYQQGA 98
Query: 978 DGYVSKPFEEENL 990
Y+ KPF+ +
Sbjct: 99 FDYLPKPFDIDEA 111
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-17
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 29/135 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS-PHCFDACFMDIQMPEMD 918
KILV+DD L+ G V A+S+ L + D D++MP++
Sbjct: 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS 63
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKC 975
G + R I+++ H+ ++ +T H D +K
Sbjct: 64 GMDILREIKKITP----------------------HMAVIILTG---HGDLDNAILAMKE 98
Query: 976 GMDGYVSKPFEEENL 990
G Y+ KP ++L
Sbjct: 99 GAFEYLRKPVTAQDL 113
|
| >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} Length = 135 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ +VDD+ + + ++ VE A A L + D +D+ MP+MDG
Sbjct: 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVE-AFQHPRAFLTLSL-NKQDIIILDLMMPDMDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E R + + +S A+ ++ + +L + + +
Sbjct: 62 IEVIRHLAEHKSPASLILI--------SGYDSG----VLHSAETLALS-----CGLNVIN 104
Query: 980 YVSKPFEEENL 990
+KP E L
Sbjct: 105 TFTKPINTEVL 115
|
| >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Length = 138 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-17
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 35/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
ILVVDD+ + V L++ G A S + L+ L + D +DI M MDG
Sbjct: 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP-PDLVLLDIMMEPMDG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+E RI+ + +P+L +TA + +
Sbjct: 63 WETLERIKTDPATR--------------------DIPVLMLTAKPLTPEEANE-----YG 97
Query: 975 CGMDGYVSKPFEEENLYREL 994
++ Y+ KP +L
Sbjct: 98 SYIEDYILKPTTH----HQL 113
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Length = 154 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 4e-17
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 31/136 (22%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+IL+V+D+ L++ G E + + A+ L D D+ MPEMDG
Sbjct: 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP-DLIISDVLMPEMDG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ R ++ +P++ +T DV+ + L+
Sbjct: 67 YALCRWLKGQPDLR--------------------TIPVILLTILSDPRDVVRS-----LE 101
Query: 975 CGMDGYVSKPFEEENL 990
CG D +++KP ++ L
Sbjct: 102 CGADDFITKPCKDVVL 117
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Length = 147 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-17
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 35/142 (24%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
+ +I++VD + AL + G + +A A+ H + MP++
Sbjct: 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHP-HLIITEANMPKI 65
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDEC 972
G + +++ A +P++A++ +
Sbjct: 66 SGMDLFNSLKKNPQTA--------------------SIPVIALSGRATAKEEAQL----- 100
Query: 973 LKCGMDGYVSKPFEEENLYREL 994
L G +++KP L
Sbjct: 101 LDMGFIDFIAKPVNA----IRL 118
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} Length = 152 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 6e-17
Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 43/157 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQSPHCFDAC--------F 909
I++++D+ + + +++ + +AL+ L
Sbjct: 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVL 64
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DV 964
+D+ +P+M G + + +++ P++ +T ++
Sbjct: 65 LDLNLPDMTGIDILKLVKENPHTR--------------------RSPVVILTTTDDQREI 104
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLY---RELAKFF 998
C G + Y++KP EN R+L FF
Sbjct: 105 Q-----RCYDLGANVYITKPVNYENFANAIRQLGLFF 136
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Length = 146 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-17
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 33/153 (21%)
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP--HCFD 906
+ + QG++ ILV ++ A + G +AA ++ FD
Sbjct: 13 ENLYFQGMIN---ILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFD 69
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
+D + A ++ ++ L L +T
Sbjct: 70 ILMIDGAALDTAELAAIEKLSRLHP----------------------GLTCLLVTT---D 104
Query: 967 ATFD---ECLKCGMDGYVSKPFEEENLYRELAK 996
A+ + ++ G+ + P E L L +
Sbjct: 105 ASSQTLLDAMRAGVRDVLRWPLEPRALDDALKR 137
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Length = 154 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-16
Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+++VDD +K+ G + S AL+ L+ D++MPEM G
Sbjct: 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG-TSVQLVISDMRMPEMGG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
++ + + + ++ +A + + G
Sbjct: 67 EVFLEQVAKSYP----------------------DIERVVISG---YADAQATIDAVNRG 101
Query: 977 -MDGYVSKPFEEENLYRELAK 996
+ ++ KP+E+E++++ + K
Sbjct: 102 KISRFLLKPWEDEDVFKVVEK 122
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Length = 142 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-16
Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 35/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+++VDD+ R+ L G + A S +D L+ +DI MP MDG
Sbjct: 8 GDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF-SGVVLLDIMMPGMDG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
++ R I + + I+ +TA + L+
Sbjct: 67 WDTIRAILDNSLEQG--------------------IAIVMLTAKNAPDAKMIG-----LQ 101
Query: 975 CGMDGYVSKPFEEENLYREL 994
+ Y++KPF+ +L
Sbjct: 102 EYVVDYITKPFDN----EDL 117
|
| >3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} Length = 140 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-16
Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 36/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKIL++D +R+ L V + + K AL+++ H D +D+ + +
Sbjct: 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHH-PDLVILDMDIIGENS 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
++++ + ++P++ + + +++ L
Sbjct: 62 PNLCLKLKRSKGLK--------------------NVPLILLFSSEHKEAIVNG-----LH 96
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D Y++KPF +L
Sbjct: 97 SGADDYLTKPFNR----NDL 112
|
| >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-15
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 42/156 (26%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQSPHCFDAC------F 909
K IL+V+D+ + + LK + AA+ LQ ++
Sbjct: 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLIL 66
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DV 964
+D+ +P+ DG E I+Q +P++ +T DV
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLK--------------------RIPVVVLTTSHNEDDV 106
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
I + ++ Y++K ++L K +
Sbjct: 107 I-----ASYELHVNCYLTKSRN----LKDLFKMVQG 133
|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Length = 132 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-15
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 29/143 (20%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L IL+ DD + + L G V +S A++ L+S D DI+ +
Sbjct: 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQ 62
Query: 917 -MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
DG++ R R+++ ++PI+ ++ HA E
Sbjct: 63 PPDGWQVARVAREIDP----------------------NMPIVYISG---HAA-LEWASN 96
Query: 976 GMDG--YVSKPFEEENLYRELAK 996
G+ + KPF L +++
Sbjct: 97 GVPDSIILEKPFTSAQLITAVSQ 119
|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 1e-15
Identities = 31/310 (10%), Positives = 77/310 (24%), Gaps = 84/310 (27%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
+ ++ ++ FL R + ++ L+ D + + +
Sbjct: 121 VLEYKDTYGDDPVSNQNIQYFLDRFYLS-RISIRMLINQHTLIFDGSTNPAHPKHIGSID 179
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+ ++ + D AK+ K + + + I+ +
Sbjct: 180 PNCN-VSEVVKDAYDMAKLLCDKYYMASP--------------------DLEIQEINAAN 218
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
K P ++ P ++ L N+++ T H + + MV +D ++
Sbjct: 219 SKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSI----- 273
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+ G G+ + + + T
Sbjct: 274 --KMSDRG-------GGVPLRKIERLFSYMYS------------------TAPTPQPGTG 306
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
+ G G+P IS+ + +G + S
Sbjct: 307 GTPLAGFGYGLP------------------------------ISRLYAKYFQGDLQLFSM 336
Query: 665 PQVGSTFSFT 674
G+
Sbjct: 337 EGFGTDAVIY 346
|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 2e-15
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQA------DSSTSRHYGGTGIGLSISKCL 651
G ED++ + + D G G+PL +R+F + + + G G GL IS+
Sbjct: 290 GKEDLS--IKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLY 347
Query: 652 VELMRGQISFVSRPQVGSTFSFT 674
+G + S VG+
Sbjct: 348 ARYFQGDLKLYSMEGVGTDAVIY 370
|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Length = 135 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 26/133 (19%)
Query: 860 KKILVVDDN-GVNRMVAAGALKKF-GATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
K++ + + R VA L V + + +D+ ++
Sbjct: 15 KQVALFSSDPNFKRDVAT-RLDALAIYDVRVSETDDFLKGPPAD-TRPGIVILDLGGGDL 72
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
G R + + +P++A++ ++ ++
Sbjct: 73 LGKPGIVEARALWAT----------------------VPLIAVSDELTSEQTRVLVRMNA 110
Query: 978 DGYVSKPFEEENL 990
++ KP + + L
Sbjct: 111 SDWLHKPLDGKEL 123
|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Length = 132 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-15
Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 36/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+ILVVDD+ LK+ VE A + A KL + +D+ MP++DG
Sbjct: 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE-PAIMTLDLSMPKLDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ R +RQ + P + + + + A +
Sbjct: 66 LDVIRSLRQ---------------------NKVANQPKILVVSGLDKAKLQQA-----VT 99
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D Y+ KPF+ L
Sbjct: 100 EGADDYLEKPFD----NDAL 115
|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Length = 184 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 29/150 (19%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LV+DDN V A L++ G V A + AL + F+ + + + G
Sbjct: 8 KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA-EKFEFITVXLHLGNDSG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
+ ++ IL +T +A+ + +K G
Sbjct: 67 LSLIAPLCDLQP----------------------DARILVLTG---YASIATAVQAVKDG 101
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
D Y++KP E++ L A
Sbjct: 102 ADNYLAKPANVESILAALQTNASEVQAEEA 131
|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 21/143 (14%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA--LIALINEVLDRA 441
+F + +HE+R+P+ + + +D R A Q+ L++++L +
Sbjct: 4 RFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL-LQLHSGIDRATRLVDQLLTLS 62
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
++++ + L +L + ++ I++ + G P +
Sbjct: 63 RLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVR-LTLNAHSIKRTGQPLLLSLL 121
Query: 502 ITNLVGNSVKFT-ERGHIFVKVH 523
+ NL+ N+V+++ + + V ++
Sbjct: 122 VRNLLDNAVRYSPQGSVVDVTLN 144
|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 7e-14
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 597 GGSEDVTLM---VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVE 653
G DVTL V D G G+ A R+ F + T+ G+G+GLSI + + +
Sbjct: 136 GSVVDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQTA---TGSGLGLSIVQRIAK 192
Query: 654 LMRGQISFVSRPQVGSTFSFT 674
L + F + Q G +
Sbjct: 193 LHGMNVEFGNAEQGGFEAKVS 213
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Length = 119 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 3e-15
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 28/136 (20%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
IL++++ V L G V ALD+L M P+
Sbjct: 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ-PIVILMAWPPPDQS 59
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
+ +R+ ++ H P++ + D L
Sbjct: 60 CLLLLQHLREHQADP--------------------HPPLVLFLGEPPV---DPLLTAQAS 96
Query: 979 GYVSKPFEEENLYREL 994
+SKP + + L
Sbjct: 97 AILSKPLDP----QLL 108
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 3e-15
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPH-CFDACFMDIQMPEM 917
+L+VDD+ G ++ AA + A+ K ++ + D + I MP+M
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKM 96
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG I + + A ++ ++A +CL G
Sbjct: 97 DGITCLSNIMEFDKNA----------------------RVIMISALGKEQLVKDCLIKGA 134
Query: 978 DGYVSKPFEEENL 990
++ KP + +
Sbjct: 135 KTFIVKPLDRAKV 147
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-15
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 30/140 (21%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+IL+VD V L T+ A A AL L S D +P+MDG
Sbjct: 16 EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-REVDLVISAAHLPQMDGP 74
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG- 976
RI Q + +T + + G
Sbjct: 75 TLLARIHQQYP----------------------STTRILLTG---DPDLKLIAKAINEGE 109
Query: 977 MDGYVSKPFEEENLYRELAK 996
+ Y+SKP++++ L L +
Sbjct: 110 IYRYLSKPWDDQELLLALRQ 129
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Length = 140 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-15
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 34/139 (24%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE--- 916
I++VDDN LK + V +S + L+ + +D+
Sbjct: 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-ENPEVVLLDMNFTSGIN 62
Query: 917 --MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---E 971
+G I++ LP++ TA +A D
Sbjct: 63 NGNEGLFWLHEIKRQYR----------------------DLPVVLFTA---YADIDLAVR 97
Query: 972 CLKCGMDGYVSKPFEEENL 990
+K G +V KP++ + L
Sbjct: 98 GIKEGASDFVVKPWDNQKL 116
|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-15
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
S + + ++D G G+P ++ VF F + +++ G+G+GL++ +L G
Sbjct: 72 VSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASH---SGSGLGLALVAQQAQLHGG 128
Query: 658 QISFVSRPQVGSTFSFT 674
S + P G+
Sbjct: 129 TASLENSPLGGARLVLR 145
|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
+ V ++ +LD + + + L ++G P R + N +
Sbjct: 3 DDHVPV--DITDLLDRAAHDAARIYPDLDVSLVP----SPTCIIVGLPAGLRLAVDNAIA 56
Query: 508 NSVKFTERGHIFVKVHLAERTMV 530
N+VK + + + +
Sbjct: 57 NAVKHGGATLVQLSAVSSRAGVE 79
|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Length = 116 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 6e-15
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 31/136 (22%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+ILVVDD R + L++ G ++ A + + AL K S +D +DI+MP + G
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-GNYDLVILDIEMPGISG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-DVIHATFDECLKCGMD 978
E IR+ + I+ +TA + D
Sbjct: 61 LEVAGEIRKKKK----------------------DAKIILLTAYS---HYRSDMSSWAAD 95
Query: 979 GYVSKPFEEENLYREL 994
YV K F + EL
Sbjct: 96 EYVVKSFN----FDEL 107
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 6e-15
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATV--ECAASAKAALDKLQS--PHCFDACFMDIQM 914
GK++L+VDD RM+ + K G V E A + + A++K + P D MDI M
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGE-ATNGREAVEKYKELKP---DIVTMDITM 57
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PEM+G +A + I +++ A I+ +A A E +K
Sbjct: 58 PEMNGIDAIKEIMKIDPNA----------------------KIIVCSAMGQQAMVIEAIK 95
Query: 975 CGMDGYVSKPFEEENL 990
G ++ KPF+ +
Sbjct: 96 AGAKDFIVKPFQPSRV 111
|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 6e-15
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G+E VED G GI ++ +F PF++ DS +R GTG+GL+I + +V+ G
Sbjct: 72 GTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS--ARTISGTGLGLAIVQRIVDNHNG 129
Query: 658 QISFVSRPQVGSTFSFT 674
+ + + G +
Sbjct: 130 MLELGTSERGGLSIRAW 146
|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
E+ + +L A+L +V+ E+ + V P ++ + N+V N
Sbjct: 4 EMPMEMADLNAVLGEVI----AAESGYEREIETALYPG-SIEVKMHPLSIKRAVANMVVN 58
Query: 509 SVKFTERGHIFVKVHLAERTMV 530
+ ++ G I V
Sbjct: 59 AARYG-NGWIKVSSGTEPNRAW 79
|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Length = 136 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 7e-15
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KIL++D + N G L++ G +++ A + + A+ K+ S + +D F++I + + DG
Sbjct: 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDGDG 63
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ ++IR + ++ PI+ MT +++A L
Sbjct: 64 WTLCKKIRNV------------TTC-----------PIVYMTYINEDQSILNA-----LN 95
Query: 975 CGMDGYVSKPF 985
G D Y+ KP
Sbjct: 96 SGGDDYLIKPL 106
|
| >2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 7e-15
Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 37/146 (25%)
Query: 853 HQGLLRGKKILVVDDN-GVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
H ++ ++ +V+D ++ L + GA V S A D +
Sbjct: 9 HHHHMQPFRVTLVEDEPSHATLIQYH-LNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVS 67
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA---DVIHAT 968
Q+ ++ F +++ +L +T ++I
Sbjct: 68 DQLVDLSIFSLLDIVKEQTK----------------------QPSVLILTTGRHELIE-- 103
Query: 969 FDECLKCGMDGYVSKPFEEENLYREL 994
Y+ KPF EL
Sbjct: 104 ----SSEHNLSYLQKPFA----ISEL 121
|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 387 ATVSHEIRTPMNGILGMLALLL-DTDLSSTQRDYAQTAQICGKALIALINEVLDRAK--I 443
A++SHEIR P+ G + L+ + +R YA+ + E LDRA+ I
Sbjct: 19 ASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYAR-----------IAIEELDRAEAII 67
Query: 444 E-----ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
A+ N++ ++ V+ + + +++ + P V+G+ +F
Sbjct: 68 TDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDI---QATLAPFSVIGEREKF 124
Query: 499 RQIITNLVGNSVKFTER-GHIFVKVHLAERTMV 530
RQ + N++ N+++ G + V V + ++
Sbjct: 125 RQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVL 157
|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
++ + DTG+G+ ER+ P+ T++ GTG+G+ + ++E M G I S
Sbjct: 157 LIRIADTGVGMTKEQLERLGEPYF-----TTKGVKGTGLGMMVVYRIIESMNGTIRIESE 211
Query: 665 PQVGSTFS 672
G+T S
Sbjct: 212 IHKGTTVS 219
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-14
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 29/133 (21%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ ++DD+ R L+ G TV ASA AL L DI+MP MDG
Sbjct: 5 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGL 63
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCGM 977
R+I ++ LP++ +T H + ++ G
Sbjct: 64 ALFRKILALDP----------------------DLPMILVTG---HGDIPMAVQAIQDGA 98
Query: 978 DGYVSKPFEEENL 990
+++KPF + L
Sbjct: 99 YDFIAKPFAADRL 111
|
| >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Length = 133 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 33/136 (24%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+L+V+++ R L AA + L + + H D D+ M MDG
Sbjct: 5 PKVLIVENSWTMRETLRLLLSG-EFDCTTAADGASGLQQALA-HPPDVLISDVNMDGMDG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ R + H+P++ ++ + +
Sbjct: 63 YALCGHFRSEPTLK--------------------HIPVIFVSGYAPRTEG------PADQ 96
Query: 975 CGMDGYVSKPFEEENL 990
D Y+ KP + L
Sbjct: 97 PVPDAYLVKPVKPPVL 112
|
| >1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-14
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 25/133 (18%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+++L+ +D + RM A L++ G + A + A++ + H D MD++MP D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-HKPDLVIMDVKMPRRD 72
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G +A I + PI+ +TA + G
Sbjct: 73 GIDAASEI-----------------------ASKRIAPIVVLTAFSQRDLVERARDAGAM 109
Query: 979 GYVSKPFEEENLY 991
Y+ KPF +L
Sbjct: 110 AYLVKPFSISDLI 122
|
| >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Length = 286 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 30/134 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATV-ECAASAKAALDKLQSPHCFDACFMDIQMP-EMD 918
++L+++D V +++ G V + AA+ AL+ + DIQ+
Sbjct: 162 EVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-RTPGLVLADIQLADGSS 220
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA-TFDECLKCGM 977
G +A + I + +P++ +TA +
Sbjct: 221 GIDAVKDILG-----------------------RMDVPVIFITA---FPERLLTGERPEP 254
Query: 978 DGYVSKPFEEENLY 991
++KPF+ E +
Sbjct: 255 TFLITKPFQPETVK 268
|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 2e-14
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
D L + VED G GIPLS +E +F + D+ G G+GL++++ + E G+I
Sbjct: 71 TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRP----GQGVGLAVAREITEQYEGKI 126
Query: 660 SFVSRPQVGSTFSFT 674
G+
Sbjct: 127 VAGESMLGGARMEVI 141
|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 12/77 (15%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
L + +LD++ S ++ + KG+ +++ +S ++ +G+ F +++ N++ N+ K+
Sbjct: 3 LHPVAPLLDNLTSALNKVYQRKGVNISLDISPEIS--FVGEQNDFVEVMGNVLDNACKYC 60
Query: 514 ERGHIFVKVHLAERTMV 530
+ + + +
Sbjct: 61 -LEFVEISARQTDEHLY 76
|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 2e-14
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 1/140 (0%)
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+DA I + V V D GIGIP F + + +R
Sbjct: 44 LDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQ 103
Query: 638 YGGT-GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
G G+G+ + ++ + + + V S +T I + S +
Sbjct: 104 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVEN 163
Query: 697 PPGFKGLKAVVVDEKPVRAA 716
GF G + A
Sbjct: 164 TRGFHGTSVAISIPGDWPKA 183
|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 2e-14
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQA------DSSTSRHYGGTGIGLSISKCL 651
G ED+T + + D G G+PL +R+F D+S + G G GL IS+
Sbjct: 266 GKEDLT--IKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLY 323
Query: 652 VELMRGQISFVSRPQVGSTFSFT 674
+ +G ++ S G+
Sbjct: 324 AKYFQGDLNLYSLSGYGTDAIIY 346
|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} Length = 136 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 6e-14
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 35/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+L+VDD+ + L+ G V AAS + AL ++ DA D+ +P +DG
Sbjct: 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL-PDALICDVLLPGIDG 63
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ +R+RQ LPIL +TA I +
Sbjct: 64 YTLCKRVRQHPLTKT--------------------LPILMLTAQGDISAKIAG-----FE 98
Query: 975 CGMDGYVSKPFEEENLYREL 994
G + Y++KPFE +EL
Sbjct: 99 AGANDYLAKPFE----PQEL 114
|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 7e-14
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 38/140 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
I++V+D V + + G TV AS + +Q+ D +DI +P+ +G
Sbjct: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
TR +R+ S+V I+ +T D I L+
Sbjct: 62 LMLTRALRER------------STV-----------GIILVTGRSDRIDRIVG-----LE 93
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D YV+KP E REL
Sbjct: 94 MGADDYVTKPLE----LREL 109
|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-14
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 30/135 (22%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++IL+VDD+ L V S AL ++ F +D++MP M+G
Sbjct: 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEG 63
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
E ++ R + + L +T + E + G
Sbjct: 64 TEVIQKARLISP----------------------NSVYLMLTG---NQDLTTAMEAVNEG 98
Query: 977 M-DGYVSKPFEEENL 990
+++KP + ++
Sbjct: 99 QVFRFLNKPCQMSDI 113
|
| >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ VVDD+ R L+ G VE A L+ + P +D++MP M G E
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGIE 65
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA--DVIHATFDECLKCGMDG 979
++ + +PI+ +TA D+ +K G
Sbjct: 66 LQEQLTAISD----------------------GIPIVFITAHGDIPMTV--RAMKAGAIE 101
Query: 980 YVSKPFEEENL 990
++ KPFEE+ L
Sbjct: 102 FLPKPFEEQAL 112
|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 1e-13
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 574 FKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPF------ 627
+ ++ + I + + G + L V + D G G+PL +R+F
Sbjct: 256 MRATMEHHANRGVYPPIQVHVTLGNED---LTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 312
Query: 628 MQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ ++S + G G GL IS+ + +G + S G+
Sbjct: 313 PRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIY 359
|
| >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Length = 123 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 38/140 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
IL+V+D V R + G V A L + + MDI +P +G
Sbjct: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
R +R+ ++V ++ +T D I L+
Sbjct: 63 LLLARELREQ------------ANV-----------ALMFLTGRDNEVDKILG-----LE 94
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D Y++KPF REL
Sbjct: 95 IGADDYITKPFNP----REL 110
|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Length = 120 | Back alignment and structure |
|---|
Score = 67.4 bits (166), Expect = 1e-13
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 38/140 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKIL+VDD + + K G V A + + AL++ ++ D +D+ +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
E + IR+ SSV PIL ++A D + L+
Sbjct: 61 LEVAKTIRKT------------SSV-----------PILMLSAKDSEFDKVIG-----LE 92
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D YV+KPF REL
Sbjct: 93 LGADDYVTKPFS----NREL 108
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Length = 140 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 4e-13
Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 31/150 (20%)
Query: 860 KKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQSPHCFDAC------FMD 911
KKI +V+DN + + AL V A+ L+ + +
Sbjct: 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLX 62
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+ +P+ DG E I+ + +P++ ++ +
Sbjct: 63 LNLPKKDGREVLAEIKSDPTLK--------------------RIPVVVLSTSINEDDIFH 102
Query: 972 CLKCGMDGYVSKPFEEENLY---RELAKFF 998
++ Y++K L+ + + +F+
Sbjct: 103 SYDLHVNCYITKSANLSQLFQIVKGIEEFW 132
|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 4e-13
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM-RGQISFVSR 664
V V ++G IP +E++F PF + GTG+GLSI + ++E G+I +R
Sbjct: 82 VSVWNSGPPIPEELKEKIFSPFF------TTKTQGTGLGLSICRKIIEDEHGGKIWTENR 135
Query: 665 PQVGSTFSFT 674
G F F
Sbjct: 136 EN-GVVFIFE 144
|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-10
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
+E NL ++ +V LF EK R I+ ++ V D R +Q++ NLV
Sbjct: 1 MEFTEF--NLNELIREVYVLFEEKIRKMNIDFCFETDNEDLR-VEADRTRIKQVLINLVQ 57
Query: 508 NSVKFT-ERGHIFVKVHLAERTMV 530
N+++ T E G I + +
Sbjct: 58 NAIEATGENGKIKITSEDMYTKVR 81
|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Length = 127 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 5e-13
Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 35/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM-PEMD 918
KKIL+V+ + AL+ G TV+ K ++++++ D + + + +
Sbjct: 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR-PDLVVLAVDLSAGQN 64
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA----DVIHATFDECLK 974
G+ ++++ + N +PI+ + LK
Sbjct: 65 GYLICGKLKKDDDLKN--------------------VPIVIIGNPDGFAQHRK-----LK 99
Query: 975 CGMDGYVSKPFEEENLYREL 994
D YV+KP + +L
Sbjct: 100 AHADEYVAKPVDA----DQL 115
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Length = 120 | Back alignment and structure |
|---|
Score = 65.5 bits (161), Expect = 5e-13
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 38/140 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKILVVDD + L+K G V CA A++ ++ D +DI +P DG
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
E R +R+ + +PI+ +TA D + L+
Sbjct: 62 VEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIG-----LE 93
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D YV+KPF REL
Sbjct: 94 IGADDYVTKPFS----TREL 109
|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 6e-13
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+IL+VDD+ L+ G VE AA+A L K+++ F+ I++P+M+G
Sbjct: 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-EFFNLALFXIKLPDMEG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + ++ + + +T L G D
Sbjct: 63 TELLEKAHKLRP----------------------GMKKIMVTGYASLENSVFSLNAGADA 100
Query: 980 YVSKPFEEENL 990
Y+ KP +L
Sbjct: 101 YIMKPVNPRDL 111
|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 7e-13
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 2/128 (1%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY-GGTGIGLSIS 648
I + V V D GIGIP F + + +R G G+G+ +
Sbjct: 57 IKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAA 116
Query: 649 KCLVELMRGQ-ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
++ + + I + P + + +++ E+ A+
Sbjct: 117 VLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS 176
Query: 708 VDEKPVRA 715
+ +A
Sbjct: 177 IPGDWPKA 184
|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 7e-13
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G + + VED G GIP Q+ +F P + + R GGTG+GLSI++ L++
Sbjct: 84 HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV-----SGRE-GGTGLGLSIARNLIDQH 137
Query: 656 RGQISFVSRPQVGSTFS 672
G+I F S P + FS
Sbjct: 138 SGKIEFTSWPG-HTEFS 153
|
| >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 7e-13
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 37/140 (26%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKILVVDD + L++ G V A+ + AL K ++ D +D+ +P++DG
Sbjct: 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-EKPDLIVLDVMLPKLDG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
E +++RQ +L PIL +TA D + L+
Sbjct: 63 IEVCKQLRQ----------------------QKLMFPILMLTAKDEEFDKVLG-----LE 95
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D Y++KPF RE+
Sbjct: 96 LGADDYMTKPFS----PREV 111
|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Length = 121 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 1e-12
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 36/139 (25%)
Query: 861 KILVVDDNGVNRMVAAG---ALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
++LVV+DN ++ ++ G V+ A AK A L D +D+ +P+
Sbjct: 2 RVLVVEDN---ALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI-PDIAIVDLGLPDE 57
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-DVIHATFD--ECLK 974
DG RR R +++ LPIL +TA + D E L
Sbjct: 58 DGLSLIRRWR----------------------SNDVSLPILVLTARESWQ---DKVEVLS 92
Query: 975 CGMDGYVSKPFE-EENLYR 992
G D YV+KPF EE + R
Sbjct: 93 AGADDYVTKPFHIEEVMAR 111
|
| >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Length = 139 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-12
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 31/140 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
IL+VDD + AL+ V A A+AA+ L+ D +MP G
Sbjct: 3 AILLVDDEPHSLAAMKLALED-DFDVLTAQGAEAAIAILEE-EWVQVIICDQRMPGRTGV 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLK-CG 976
+ +R+ + +T + + G
Sbjct: 61 DFLTEVRERWP----------------------ETVRIIITG---YTDSASMMAAINDAG 95
Query: 977 MDGYVSKPFEEENLYRELAK 996
+ +++KP+ E L
Sbjct: 96 IHQFLTKPWHPEQLLSSARN 115
|
| >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Length = 230 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 38/140 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+L+V+D A L+K G AAL + D +D+ +P M G
Sbjct: 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG-ADIVLLDLMLPGMSG 63
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ +++R SSV P++ +TA D + L+
Sbjct: 64 TDVCKQLRAR------------SSV-----------PVIMVTARDSEIDKVVG-----LE 95
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D YV+KP+ REL
Sbjct: 96 LGADDYVTKPYS----AREL 111
|
| >2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Length = 127 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 3e-12
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 35/140 (25%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ILVV+D R + L++ G A +A+++L P D + +P G
Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW-PDLILLAWMLPGGSG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ + +R+ + +P++ +TA D + L+
Sbjct: 62 IQFIKHLRRESMTRD--------------------IPVVMLTARGEEEDRVRG-----LE 96
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D ++KPF +EL
Sbjct: 97 TGADDCITKPFS----PKEL 112
|
| >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Length = 196 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 4e-12
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 28/135 (20%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LR ++LV++ G L + G +V A D F I
Sbjct: 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----DVPVDVVFTSIFQNR 64
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
A ++A+ A + ++
Sbjct: 65 HHDEIAALLA-----------------------AGTPRTTLVALVEYESPAVLSQIIELE 101
Query: 977 MDGYVSKPFEEENLY 991
G +++P + +
Sbjct: 102 CHGVITQPLDAHRVL 116
|
| >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Length = 238 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 38/140 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ILVVDD+ + L+ G AL ++ D +D+ +P M+G
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-LRPDLVLLDLMLPGMNG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+ R +R S V PI+ +TA DV+ L+
Sbjct: 65 IDVCRVLRAD------------SGV-----------PIVMLTAKTDTVDVVLG-----LE 96
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D Y+ KPF+ +EL
Sbjct: 97 SGADDYIMKPFK----PKEL 112
|
| >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Length = 121 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 4e-12
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 40/141 (28%)
Query: 860 KKILVVDD-NGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+L+V+D + R + AL+ G V A + + L + + D +D+ +P+ D
Sbjct: 2 TNVLIVEDEQAIRRFLRT-ALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGD 59
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECL 973
G E R +RQ S+V P++ ++A D I A L
Sbjct: 60 GIEFIRDLRQW------------SAV-----------PVIVLSARSEESDKIAA-----L 91
Query: 974 KCGMDGYVSKPFEEENLYREL 994
G D Y+SKPF EL
Sbjct: 92 DAGADDYLSKPFG----IGEL 108
|
| >1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Length = 220 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 7e-12
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 36/131 (27%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KI VVDD+ + L++ G V+ + + L+ ++ H +D+ +P+ G
Sbjct: 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVV---VLDVMLPDYSG 58
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+E R I++ ++ +T V+ +
Sbjct: 59 YEICRMIKETRP----------------------ETWVILLTLLSDDESVLKG-----FE 91
Query: 975 CGMDGYVSKPF 985
G D YV+KPF
Sbjct: 92 AGADDYVTKPF 102
|
| >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Length = 233 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 36/139 (25%)
Query: 861 KILVV-DDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++LVV DD+ V + G L+ G V A AL DA +DI MP +DG
Sbjct: 9 RVLVVDDDSDVLASLERG-LRLSGFEVATAVDGAEALRSATENR-PDAIVLDINMPVLDG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+R M++ +P+ ++A D + L+
Sbjct: 67 VSVVTALRAMDN----------------------DVPVCVLSARSSVDDRVAG-----LE 99
Query: 975 CGMDGYVSKPFE-EENLYR 992
G D Y+ KPF E + R
Sbjct: 100 AGADDYLVKPFVLAELVAR 118
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-11
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 31/134 (23%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ +VDD R A L G V+ SA+A L D++MP+M G
Sbjct: 5 TVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-DVRNGVLVTDLRMPDMSGV 63
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG- 976
E R + ++ ++P + +T H E +K G
Sbjct: 64 ELLRNLGDLKI----------------------NIPSIVITG---HGDVPMAVEAMKAGA 98
Query: 977 MDGYVSKPFEEENL 990
+D ++ KPFE+ +
Sbjct: 99 VD-FIEKPFEDTVI 111
|
| >3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Length = 249 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 40/141 (28%)
Query: 860 KKILVVDDN-GVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++ILV++D+ + ++ L G V+ A SA L K + D +D+ +P+ D
Sbjct: 38 QRILVIEDDHDIANVLRMD-LTDAGYVVDHADSAMNGLIKARE-DHPDLILLDLGLPDFD 95
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECL 973
G + +R+R+ S++ PI+ +TA + + L
Sbjct: 96 GGDVVQRLRK------------NSAL-----------PIIVLTARDTVEEKVRL-----L 127
Query: 974 KCGMDGYVSKPFEEENLYREL 994
G D Y+ KPF EL
Sbjct: 128 GLGADDYLIKPFH----PDEL 144
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Length = 122 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 21/131 (16%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KK+L+VDD+ V R + + LKK G V A + + AL+KL D + I MP MDG
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT-PDLIVLXIMMPVMDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
F +++++ E +P++ +TA L G
Sbjct: 62 FTVLKKLQEKEEWKR--------------------IPVIVLTAKGGEEDESLALSLGARK 101
Query: 980 YVSKPFEEENL 990
+ KPF
Sbjct: 102 VMRKPFSPSQF 112
|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 9e-11
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+++V+D + + + + V L LQ + DA F+DI +P +D
Sbjct: 11 KVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-NKVDAIFLDINIPSLD 69
Query: 919 GFEATRRIRQMESK 932
G + I Q K
Sbjct: 70 GVLLAQNISQFAHK 83
|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQAD--SSTS 635
+DA I + G + VT+++ ED G GI +VF + +
Sbjct: 50 LDACEEAGILPDILVQVERTGPDYVTVII--EDNGPGIVREQIPKVFAKLLYGSRFHALK 107
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
+ G GIG+S + ++ G+ + + + +
Sbjct: 108 QSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAH 145
|
| >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Length = 225 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 2e-10
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 39/140 (27%)
Query: 861 KILVV-DDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++LVV D+ + ++ LKK TV+ + + + FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEA-LKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
+E + +R+ + P+L +TA + L
Sbjct: 62 WEILKSMRESGV----------------------NTPVLMLTALSDVEYRVKG-----LN 94
Query: 975 CGMDGYVSKPFEEENLYREL 994
G D Y+ KPF+ REL
Sbjct: 95 MGADDYLPKPFD----LREL 110
|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-10
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 42/134 (31%)
Query: 861 KILVVDD-----NGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
+L+VDD G + + GA G VE A + AL L++ + D +D+ +P
Sbjct: 5 VVLIVDDHHLIRAGA-KNLLEGAFS--GMRVEGAETVSDALAFLEADNTVDLILLDVNLP 61
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE---- 971
+ + + R+++ + + ++ +
Sbjct: 62 DAEAIDGLVRLKRFDP----------------------SNAVALIS------GETDHELI 93
Query: 972 --CLKCGMDGYVSK 983
L+ G DG++ K
Sbjct: 94 RAALEAGADGFIPK 107
|
| >3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Length = 250 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 7e-10
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDD-NGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
G + + + ++LVVDD + +++ LK G V A + ALD+ +
Sbjct: 6 KGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVS-LKFQGFEVYTATNGAQALDRAR 64
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
DA +D+ MP MDGF RR+R D + P L +
Sbjct: 65 ETR-PDAVILDVXMPGMDGFGVLRRLRA----------------------DGIDAPALFL 101
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
TA L G D YV+KPF E + L +
Sbjct: 102 TARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK 147
|
| >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Length = 145 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-10
Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 37/169 (21%)
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQSPHCFD 906
GS H +++VDD + R+ A +K V AA+ + ALDKL + D
Sbjct: 3 GSHHHHHHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVD 62
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL---AMTAD 963
+DI+MP MDG E R + + I ++
Sbjct: 63 LILLDIEMPVMDGMEFLRHAKL-----------------------KTRAKICMLSSVAVS 99
Query: 964 VIHATFDECLKCGMDGYVSKPFE------EENLYRELAKFFKSKPLSGA 1006
+ G DG V+KP EE ELA+ + L A
Sbjct: 100 GSPHAA-RARELGADGVVAKPSGTVSHDLEEKTGGELAR--TMRTLMAA 145
|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
ED + + V D G+GIP E P +T +G+G +I + + ++
Sbjct: 71 EDGVVHLTVRDEGVGIP--DIEEARQPL----FTTKPELERSGMGFTIMENFM----DEV 120
Query: 660 SFVSRPQVGSTFSFT 674
S G+T
Sbjct: 121 IVESEVNKGTTVYLK 135
|
| >3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Length = 400 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+LV++D R+VA ALKK + AA K A+ L+S D D+QM MDG
Sbjct: 5 NVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDG 64
Query: 920 FEATRRIRQMESKA 933
R
Sbjct: 65 LAFLRHASLSGKVH 78
|
| >3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-09
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 38/145 (26%)
Query: 861 KILVVDD-----NGVNRMVAAGALKKFGATVEC-AASAKAALDKLQSPHCFDACFMDIQM 914
+IL+VDD +G+ + K A A+ H + D++M
Sbjct: 4 RILIVDDEKLTRDGLIANIN---WKALSFDQIDQADDGINAIQIALK-HPPNVLLTDVRM 59
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---E 971
P MDG E I ++ ++ M+ ++ +
Sbjct: 60 PRMDGIELVDNILKL----------------------YPDCSVIFMSG---YSDKEYLKA 94
Query: 972 CLKCGMDGYVSKPFEEENLYRELAK 996
+K YV KP + + L +
Sbjct: 95 AIKFRAIRYVEKPIDPSEIMDALKQ 119
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 1e-08
Identities = 96/663 (14%), Positives = 190/663 (28%), Gaps = 232/663 (34%)
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALI--NEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
+D + Q Y + A + +V D K K E++ ++ + + L
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-MSKDAVSGTL 65
Query: 466 SLFS--EKSRNKGIELAVFVSDKVP---EFVLGDPGRFRQIITNLVGNSVKFTER----- 515
LF + + ++ FV + + +F L P + Q ++ + + E+
Sbjct: 66 RLFWTLLSKQEEMVQ--KFVEEVLRINYKF-LMSPIKTEQRQPSM--MTRMYIEQRDRLY 120
Query: 516 --GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC---RSGTGQFNTLSGLEAADGRNS 570
+F K ++ R + + LL + V G+G+ + + A D S
Sbjct: 121 NDNQVFAKYNV-SRLQPYLKLR-QALLELRPAKNVLIDGVLGSGK----TWV-ALDVCLS 173
Query: 571 WDKFKHLIDAEGF-------QSNASIINMMASNGGSEDVTLMVCVE-DTGIGIPL---SA 619
K + +D + F S +++ M+ + D I L S
Sbjct: 174 -YKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q + + Y CL+ L V + + F+
Sbjct: 231 QAELRRLLKS------KPY---------ENCLLVL-LN----VQNAKAWNAFNL-----S 265
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
CK + + K V D +A T H+ S+ S
Sbjct: 266 CKILL---TTRFKQ-------------VTD---FLSAATTTHI-----------SLDHHS 295
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
LT E K + LD +P LP+
Sbjct: 296 M----TLTPDEVK-------------------SLLLKYLDCRP----QDLPRE---VLTT 325
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST-ENKRQAGRGVPNGSSFHQGLLR 858
+ P R S+IA ++ L+T +N +
Sbjct: 326 N-------------------PRRLSIIAESIRDGLATWDNWKH----------------- 349
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP---HCFDACFM---DI 912
V+ + + ++ +++L+ L+ FD +
Sbjct: 350 ------VNCDKLTTII------------------ESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 913 QMP---------EMDGFEATRRIRQMESK--ANEQMMNGGSSV-----DGTAKRDE---L 953
+P ++ + + ++ +Q S+ + K + L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 954 HLPILAMTADVIHATFD--ECLKCGMDGYV----------SKPFEEENLYRELA---KFF 998
H I+ I TFD + + +D Y + E L+R + +F
Sbjct: 446 HRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 999 KSK 1001
+ K
Sbjct: 504 EQK 506
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 5e-08
Identities = 69/458 (15%), Positives = 133/458 (29%), Gaps = 153/458 (33%)
Query: 159 MKSEPSPIRDEYAPVMF-YQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG 217
M E + +Y ++ +++ V + D ++ ++IL ++ + G
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSG 63
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVEN---LLGQLAGNQAI 274
+ L F SK V++ F E L N L+ +
Sbjct: 64 TLRL-----FWTLLSK--QEEMVQK------------FVEEVLRINYKFLMSPIK----- 99
Query: 275 LVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTAL 334
+ S MY +Q + + F K+ + R P+ L
Sbjct: 100 ----TEQRQPSMMTRMYIEQ---------RDRLYNDNQVFAKYN-VSRLQ-----PYLKL 140
Query: 335 TTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKM-----QELKVRAEAADVAKSQ----- 384
A L + ++ G + + A DV S
Sbjct: 141 RQA--LLELRPAKNVLIDG--------------VLGSGKTWV-----ALDVCLSYKVQCK 179
Query: 385 -----FLATVSHEIRTPMNGILGML-ALLLDTDLSSTQR-DYAQTAQICGKALIALINEV 437
F + + +L ML LL D + T R D++ + I+ +
Sbjct: 180 MDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSN-------IKLRIHSI 230
Query: 438 LDRAK--IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
+ ++++ E +L +L +V +N F +
Sbjct: 231 QAELRRLLKSKPYE-NCLL-----VLLNV--------QNAKA-WNAF-----------NL 264
Query: 496 G-------RFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL------LNG 542
RF+Q+ L + HI + H T DE L+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTT-----HISLDHHSMTLT------PDEVKSLLLKYLDC 313
Query: 543 GTE---EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ V + + ++ DG +WD +KH+
Sbjct: 314 RPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHV 350
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Length = 134 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 2e-08
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 38/131 (29%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATV--ECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+++DD+ + L K + E +A+ ++++ D +D+ +P ++
Sbjct: 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAE-LTEGGSAVQRVET-LKPDIVIIDVDIPGVN 60
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD------EC 972
G + +R+ + I+ ++ + C
Sbjct: 61 GIQVLETLRKRQY----------------------SGIIIIVS------AKNDHFYGKHC 92
Query: 973 LKCGMDGYVSK 983
G +G+VSK
Sbjct: 93 ADAGANGFVSK 103
|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Length = 164 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQS--PHCFDACFMDIQMPE 916
++LVVDD+ RMV + V A A++K P D MDI+MP
Sbjct: 27 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKP---DVITMDIEMPN 83
Query: 917 MDGFEATRRIRQ 928
++G EA + I +
Sbjct: 84 LNGIEALKLIMK 95
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Length = 136 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-08
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 33/135 (24%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM--DG 919
I +VD R + L T++C ASA++ + + ++ + + G
Sbjct: 9 IYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-SDDAIGMIIEAHLEDKKDSG 67
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD---ECLKCG 976
E + + HLP + M + + ++
Sbjct: 68 IELLETL----------------------VKRGFHLPTIVMAS---SSDIPTAVRAMRAS 102
Query: 977 -MDGYVSKPFEEENL 990
D ++ KPF E L
Sbjct: 103 AAD-FIEKPFIEHVL 116
|
| >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Length = 130 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-08
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 50/145 (34%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVEC---------AASAKAALDKLQSPHCFDACFMD 911
K+ + DDN R + + + A + + L L+ D +D
Sbjct: 4 KVCIADDN---RELVSL----LDEYISSQPDMEVIGTAYNGQDCLQMLEE-KRPDILLLD 55
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD- 970
I MP +DG RIR + + ++ +T F
Sbjct: 56 IIMPHLDGLAVLERIR--------------AGFEHQPN-------VIMLT------AFGQ 88
Query: 971 -----ECLKCGMDGYVSKPFEEENL 990
+ ++ G ++ KPF+ ENL
Sbjct: 89 EDVTKKAVELGASYFILKPFDMENL 113
|
| >1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Length = 349 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 5e-08
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQS--PHCFDACFMDIQMPE 916
++L VDD+ + R + + V A A D ++ P D +D++MP
Sbjct: 5 RVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNP---DVLTLDVEMPR 61
Query: 917 MDGFEATRRIRQ 928
MDG + ++ +
Sbjct: 62 MDGLDFLEKLMR 73
|
| >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Length = 133 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGAT------VECAASAKAALDKLQSPHCFDACFMDIQM 914
+++ +D + R A+ + + + A+ ++ + + +DI+M
Sbjct: 5 SLIIAEDQNMLR----QAMVQLIKLHGDFEILADTDNGLDAMKLIEE-YNPNVVILDIEM 59
Query: 915 PEMDGFEATRRIRQ 928
P M G E IR+
Sbjct: 60 PGMTGLEVLAEIRK 73
|
| >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Length = 223 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 41/140 (29%)
Query: 861 KILVV-DDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++L++ ++ + + G L G + S + + +D + + + +
Sbjct: 2 RVLLIEKNSVLGGEIEKG-LNVKGFMADVTESLEDGEYLMDI-RNYDL----VMVSDKNA 55
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDECLK 974
RI++ S + +L + + +HA +
Sbjct: 56 LSFVSRIKEKHS----------------------SIVVLVSSDNPTSEEEVHA-----FE 88
Query: 975 CGMDGYVSKPFE--EENLYR 992
G D Y++KP+ + + R
Sbjct: 89 QGADDYIAKPYRSIKALVAR 108
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Length = 137 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-07
Identities = 18/142 (12%), Positives = 47/142 (33%), Gaps = 45/142 (31%)
Query: 861 KILVVDDNGVNRMVAAG---ALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
++L+++ N ++ L G + S + + + +D + + +
Sbjct: 20 RVLLIEKN---SVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN-YDL----VMVSDK 71
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA-----DVIHATFDEC 972
+ RI++ S + +L + + +HA
Sbjct: 72 NALSFVSRIKEKHSS----------------------IVVLVSSDNPTSEEEVHA----- 104
Query: 973 LKCGMDGYVSKPFE--EENLYR 992
+ G D Y++KP+ + + R
Sbjct: 105 FEQGADDYIAKPYRSIKALVAR 126
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Length = 150 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVEC---------AASAKAALDKLQSPHCFDACFMD 911
K+LV +D M+ + A + + A+ L+ D +D
Sbjct: 22 KVLVAEDQ---SMLRDA----MCQLLTLQPDVESVLQAKNGQEAIQLLEK-ESVDIAILD 73
Query: 912 IQMPEMDGFEATRRIRQ 928
++MP G E IR
Sbjct: 74 VEMPVKTGLEVLEWIRS 90
|
| >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Length = 225 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 4/71 (5%)
Query: 861 KILVVDDNGVNRMVAAGALKK---FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
+ ++ D + + AL+ + + +K +S +D
Sbjct: 9 NVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSI-QMLVIDYSRISD 67
Query: 918 DGFEATRRIRQ 928
D +
Sbjct: 68 DVLTDYSSFKH 78
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Length = 153 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 861 KILVVDD-----NGVNRMVAAGALKKFGATV--ECAASAKAALDKLQSPHCFDACFMDIQ 913
+I++VDD G R++ G V E AA A A + D MD+
Sbjct: 7 RIMLVDDHPIVREGYRRLIERRP----GYAVVAE-AADAGEAYRLYRE-TTPDIVVMDLT 60
Query: 914 MPEMDGFEATRRIRQ 928
+P G EATR IRQ
Sbjct: 61 LPGPGGIEATRHIRQ 75
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-06
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVEC---------AASAKAALDKLQSPHCFDACFMD 911
+++V DD+ + G + A AAL+ +++ H D +D
Sbjct: 17 RVVVGDDH---PLFREG----VVRALSLSGSVNVVGEADDGAAALELIKA-HLPDVALLD 68
Query: 912 IQMPEMDGFEATRRIRQ 928
+MP MDG + +R
Sbjct: 69 YRMPGMDGAQVAAAVRS 85
|
| >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Length = 215 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 861 KILVVDD-----NGVNRMVAAGALKKFGATV--ECAASAKAALDKLQSPHCFDACFMDIQ 913
IL++DD GV ++++ TV E A++ + ++ +S D +D+
Sbjct: 7 TILLIDDHPMLRTGVKQLISMAP----DITVVGE-ASNGEQGIELAES-LDPDLILLDLN 60
Query: 914 MPEMDGFEATRRIRQ 928
MP M+G E ++R+
Sbjct: 61 MPGMNGLETLDKLRE 75
|
| >3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Length = 225 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928
A S A+ ++ + D +D+++P+ +G E R +
Sbjct: 33 AGSVAEAMARVPA-ARPDVAVLDVRLPDGNGIELCRDLLS 71
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1006 | ||||
| d1dcfa_ | 134 | c.23.1.2 (A:) Receiver domain of the ethylene rece | 3e-28 | |
| d1dcfa_ | 134 | c.23.1.2 (A:) Receiver domain of the ethylene rece | 9e-08 | |
| d1peya_ | 119 | c.23.1.1 (A:) Sporulation response regulator Spo0F | 7e-24 | |
| d2r25b1 | 128 | c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba | 8e-24 | |
| d2c2aa2 | 161 | d.122.1.3 (A:321-481) Sensor histidine kinase TM08 | 9e-24 | |
| d2c2aa2 | 161 | d.122.1.3 (A:321-481) Sensor histidine kinase TM08 | 1e-14 | |
| d1u0sy_ | 118 | c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T | 2e-23 | |
| d1mb3a_ | 123 | c.23.1.1 (A:) Cell division response regulator Div | 6e-23 | |
| d1jbea_ | 128 | c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI | 2e-22 | |
| d1zesa1 | 121 | c.23.1.1 (A:3-123) PhoB receiver domain {Escherich | 2e-22 | |
| d1dz3a_ | 123 | c.23.1.1 (A:) Sporulation response regulator Spo0A | 6e-22 | |
| d1ysra1 | 148 | d.122.1.3 (A:299-446) Sensor-type histidine kinase | 6e-21 | |
| d1ysra1 | 148 | d.122.1.3 (A:299-446) Sensor-type histidine kinase | 5e-10 | |
| d1a2oa1 | 140 | c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal | 5e-20 | |
| d2b4aa1 | 118 | c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba | 8e-20 | |
| d1bxda_ | 161 | d.122.1.3 (A:) Histidine kinase domain of the osmo | 1e-19 | |
| d1bxda_ | 161 | d.122.1.3 (A:) Histidine kinase domain of the osmo | 3e-10 | |
| d2a9pa1 | 117 | c.23.1.1 (A:2-118) DNA-binding response regulator | 3e-19 | |
| d1p6qa_ | 129 | c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti | 4e-19 | |
| d1a04a2 | 138 | c.23.1.1 (A:5-142) Nitrate/nitrite response regula | 5e-19 | |
| d1jm6a2 | 190 | d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin | 5e-18 | |
| d2ayxa1 | 133 | c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C | 6e-18 | |
| d1k68a_ | 140 | c.23.1.1 (A:) Response regulator for cyanobacteria | 1e-17 | |
| d1i3ca_ | 144 | c.23.1.1 (A:) Response regulator for cyanobacteria | 1e-17 | |
| d1id0a_ | 146 | d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche | 3e-17 | |
| d1id0a_ | 146 | d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche | 2e-11 | |
| d1zgza1 | 120 | c.23.1.1 (A:2-121) TorCAD operon transcriptional r | 4e-17 | |
| d1s8na_ | 190 | c.23.1.1 (A:) Probable two-component system transc | 1e-16 | |
| d1krwa_ | 123 | c.23.1.1 (A:) NTRC receiver domain {Salmonella typ | 3e-16 | |
| d1ys7a2 | 121 | c.23.1.1 (A:7-127) Transcriptional regulatory prot | 4e-16 | |
| d1qkka_ | 140 | c.23.1.1 (A:) Transcriptional regulatory protein D | 6e-16 | |
| d1ny5a1 | 137 | c.23.1.1 (A:1-137) Transcriptional activator sigm5 | 7e-16 | |
| d1xhfa1 | 121 | c.23.1.1 (A:2-122) Aerobic respiration control pro | 1e-15 | |
| d1yioa2 | 128 | c.23.1.1 (A:3-130) Response regulatory protein Sty | 1e-15 | |
| d1dbwa_ | 123 | c.23.1.1 (A:) Transcriptional regulatory protein F | 2e-15 | |
| d1gkza2 | 193 | d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci | 3e-15 | |
| d1zh2a1 | 119 | c.23.1.1 (A:2-120) Transcriptional regulatory prot | 4e-15 | |
| d1kgsa2 | 122 | c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog | 5e-15 | |
| d1mvoa_ | 121 | c.23.1.1 (A:) PhoP receiver domain {Bacillus subti | 6e-15 | |
| d1k66a_ | 149 | c.23.1.1 (A:) Response regulator for cyanobacteria | 9e-15 | |
| d2pl1a1 | 119 | c.23.1.1 (A:1-119) PhoP receiver domain {Escherich | 1e-14 | |
| d1p2fa2 | 120 | c.23.1.1 (A:1-120) Response regulator DrrB {Thermo | 5e-14 | |
| d1w25a2 | 153 | c.23.1.1 (A:141-293) Response regulator PleD, rece | 9e-14 | |
| d1qo0d_ | 189 | c.23.1.3 (D:) Positive regulator of the amidase op | 1e-13 | |
| d1w25a1 | 139 | c.23.1.1 (A:2-140) Response regulator PleD, receiv | 4e-13 | |
| d2c2aa1 | 89 | a.30.2.1 (A:232-320) Sensor histidine kinase TM085 | 2e-09 | |
| d1r62a_ | 156 | d.122.1.3 (A:) Nitrogen regulation protein NtrB, C | 5e-09 | |
| d1r62a_ | 156 | d.122.1.3 (A:) Nitrogen regulation protein NtrB, C | 4e-07 | |
| d1i58a_ | 189 | d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m | 7e-09 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 1e-08 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 8e-04 | |
| d1joya_ | 67 | a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c | 2e-07 | |
| d1y8oa2 | 125 | d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas | 7e-04 | |
| d1ixma_ | 179 | d.123.1.1 (A:) Sporulation response regulatory pro | 0.001 | |
| d1th8a_ | 139 | d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus | 0.002 |
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 108 bits (271), Expect = 3e-28
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
G K+LV+D+NGV+RMV G L G V +S + L + H FMD+ MP
Sbjct: 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HEHKVVFMDVCMPG 62
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
++ ++ RI + +K Q ++A++ + +T ++C+ G
Sbjct: 63 VENYQIALRIHEKFTKQRHQ-----------------RPLLVALSGNTDKSTKEKCMSFG 105
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKPL 1003
+DG + KP +N+ L+ + + L
Sbjct: 106 LDGVLLKPVSLDNIRDVLSDLLEPRVL 132
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.0 bits (119), Expect = 9e-08
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI 757
F GLK +V+DE V VT+ L LG V SS ++ + + +
Sbjct: 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH---------EHKV 53
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVI 817
+ + D + G ++ A + K + P L+ L+ N K +K + G D V+
Sbjct: 54 VFM--DVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFG-LDGVL 110
Query: 818 MKPLRASMIAACLQQVL 834
+KP+ I L +L
Sbjct: 111 LKPVSLDNIRDVLSDLL 127
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Score = 95.4 bits (237), Expect = 7e-24
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+KIL+VDD R++ K G AA+ ALD + D +D+++P MDG
Sbjct: 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-ERPDLVLLDMKIPGMDG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E +R++ ++ ++ ++ MTA E + G
Sbjct: 61 IEILKRMKVIDE----------------------NIRVIIMTAYGELDMIQESKELGALT 98
Query: 980 YVSKPFEEENLYRELAKF 997
+ +KPF+ + + + K+
Sbjct: 99 HFAKPFDIDEIRDAVKKY 116
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.4 bits (237), Expect = 8e-24
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 26/142 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQ----SPHCFDACFMDIQMP 915
KILVV+DN VN+ V L G +E A + A DK++ ++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
++DG +T+ IR+ PI+A+TA + ECL+
Sbjct: 63 KVDGLLSTKMIRRDLGY---------------------TSPIVALTAFADDSNIKECLES 101
Query: 976 GMDGYVSKPFEEENLYRELAKF 997
GM+G++SKP + L L +F
Sbjct: 102 GMNGFLSKPIKRPKLKTILTEF 123
|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor histidine kinase TM0853 species: Thermotoga maritima [TaxId: 2336]
Score = 96.5 bits (240), Expect = 9e-24
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L + + + + +D +++ VED GIGIP A++R+F F + DSS +
Sbjct: 58 LNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTY 117
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
GTG+GL+I+K +VEL G+I S GS F
Sbjct: 118 EVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVW 155
|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor histidine kinase TM0853 species: Thermotoga maritima [TaxId: 2336]
Score = 70.3 bits (172), Expect = 1e-14
Identities = 13/70 (18%), Positives = 33/70 (47%)
Query: 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
++ +L +++ ++ E + + + + + P DP R RQ++ NL+ N
Sbjct: 1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60
Query: 509 SVKFTERGHI 518
VK++++
Sbjct: 61 GVKYSKKDAP 70
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Score = 93.8 bits (233), Expect = 2e-23
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
GK++L+VDD RM+ + K G A + + A++K + D MDI MPEM
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-DIVTMDITMPEM 59
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
+G +A + I +++ + I+ +A A E +K G
Sbjct: 60 NGIDAIKEIMKIDP----------------------NAKIIVCSAMGQQAMVIEAIKAGA 97
Query: 978 DGYVSKPFEEENLYRELAK 996
++ KPF+ + L K
Sbjct: 98 KDFIVKPFQPSRVVEALNK 116
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Score = 92.8 bits (230), Expect = 6e-23
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 21/143 (14%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KK+L+V+DN +N + L+ G +AL + + D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E T+ +++ + A H+P++A+TA + + + G +
Sbjct: 61 LEVTKWLKEDDDLA--------------------HIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 980 YVSKPFEEENLYRELAKFFKSKP 1002
Y+SKP + + + + +P
Sbjct: 101 YISKPISVVHFLETIKRLLERQP 123
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (226), Expect = 2e-22
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 21/140 (15%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ILVV+D R + L++ G A +A+++L D +D +P G
Sbjct: 1 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSG 59
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+ + +++ +P++ +TA L+ G D
Sbjct: 60 IQFIKHLKRESMTR--------------------DIPVVMLTARGEEEDRVRGLETGADD 99
Query: 980 YVSKPFEEENLYRELAKFFK 999
Y++KPF + L + +
Sbjct: 100 YITKPFSPKELVARIKAVMR 119
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Score = 89.9 bits (223), Expect = 6e-22
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+ + DDN + + + A + + L L+ D +DI MP +D
Sbjct: 3 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-KRPDILLLDIIMPHLD 61
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G RIR E ++ +TA + ++ G
Sbjct: 62 GLAVLERIR---------------------AGFEHQPNVIMLTAFGQEDVTKKAVELGAS 100
Query: 979 GYVSKPFEEENLYRELAK 996
++ KPF+ ENL + +
Sbjct: 101 YFILKPFDMENLAHHIRQ 118
|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor-type histidine kinase PrrB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 88.0 bits (218), Expect = 6e-21
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S + + ++D G G+P ++ VF F + + + G+G+GL++ +L G
Sbjct: 71 SSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST---ASHSGSGLGLALVAQQAQLHGGT 127
Query: 659 ISFVSRPQVGSTFSFT 674
S + P G+
Sbjct: 128 ASLENSPLGGARLVLR 143
|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor-type histidine kinase PrrB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 56.4 bits (136), Expect = 5e-10
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 451 EAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSV 510
+ V ++ +LD + + + L ++G P R + N + N+V
Sbjct: 2 DHVPVDITDLLDRAAHDAARIYPDLDVSLVP----SPTCIIVGLPAGLRLAVDNAIANAV 57
Query: 511 KFTERGHIFVKVHLAERTMV 530
K + + + +
Sbjct: 58 KHGGATLVQLSAVSSRAGVE 77
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.0 bits (210), Expect = 5e-20
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++L VDD+ + R + + V A A D ++ D +D++MP MD
Sbjct: 5 RVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-FNPDVLTLDVEMPRMD 63
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + ++ ++ R + + ++T T L+ G
Sbjct: 64 GLDFLEKLMRL--------------------RPMPVVMVSSLTGKGSEVTL-RALELGAI 102
Query: 979 GYVSKPFE 986
+V+KP
Sbjct: 103 DFVTKPQL 110
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Score = 83.8 bits (207), Expect = 8e-20
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 25/130 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++ +V+D + + L + GA V S A D + Q+ ++ F
Sbjct: 4 RVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIF 63
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+++ +L +T E + + Y
Sbjct: 64 SLLDIVKEQTK----------------------QPSVLILTTGRHEL--IESSEHNLS-Y 98
Query: 981 VSKPFEEENL 990
+ KPF L
Sbjct: 99 LQKPFAISEL 108
|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase domain of the osmosensor EnvZ species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (210), Expect = 1e-19
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E VED G GI ++ +F PF++ D ++R GTG+GL+I + +V+ G +
Sbjct: 74 EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGD--SARTISGTGLGLAIVQRIVDNHNGML 131
Query: 660 SFVSRPQVGSTFSFT 674
+ + G +
Sbjct: 132 ELGTSERGGLSIRAW 146
|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase domain of the osmosensor EnvZ species: Escherichia coli [TaxId: 562]
Score = 58.0 bits (140), Expect = 3e-10
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
+++ +E + +L A+L +V++ S R L V P ++ + N+
Sbjct: 3 QEMPME--MADLNAVLGEVIAAESGYEREIETAL-----YPGSIEVKMHPLSIKRAVANM 55
Query: 506 VGNSVKFTERGHIFVKVHLAERTMV 530
V N+ ++ G I V
Sbjct: 56 VVNAARYGN-GWIKVSSGTEPNRAW 79
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 82.0 bits (202), Expect = 3e-19
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 24/131 (18%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKIL+VDD + + K G V A + + AL++ ++ D +D+ +PE+DG
Sbjct: 1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDG 59
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR+ +PIL ++A L+ G D
Sbjct: 60 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 96
Query: 980 YVSKPFEEENL 990
YV+KPF L
Sbjct: 97 YVTKPFSNREL 107
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Score = 82.3 bits (203), Expect = 4e-19
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 22/141 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+L+VDD +R++ AL++ G + A + + + + D MP+MDG
Sbjct: 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-NPHHLVISDFNMPKMDG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+ +R + + +TA A + G +
Sbjct: 67 LGLLQAVRANPATK--------------------KAAFIILTAQGDRALVQKAAALGANN 106
Query: 980 YVSKPFEEENLYRELAKFFKS 1000
++KPF E + + F +
Sbjct: 107 VLAKPFTIEKMKAAIEAVFGA 127
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Score = 82.2 bits (203), Expect = 5e-19
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 25/138 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
IL++DD+ + R + V A++ + ++ +S D +D+ MP M+
Sbjct: 4 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMN 62
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G E ++R+ L I+ + LK G D
Sbjct: 63 GLETLDKLRE----------------------KSLSGRIVVFSVSNHEEDVVTALKRGAD 100
Query: 979 GYVSKPFEEENLYRELAK 996
GY+ K E E+L + L +
Sbjct: 101 GYLLKDMEPEDLLKALHQ 118
|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Pyruvate dehydrogenase kinase species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]
Score = 80.9 bits (199), Expect = 5e-18
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR-----HYGGTGIGLSISKCLVEL 654
+ L + + D G G+PL ER+F + G G GL IS+ +
Sbjct: 96 GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKY 155
Query: 655 MRGQISFVSRPQVGSTFSFT 674
+G + S G+
Sbjct: 156 FQGDLQLFSMEGFGTDAVIY 175
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 79.0 bits (194), Expect = 6e-18
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
ILVVDD+ +NR + A L G + A AL+ L H D+ MP MDG+
Sbjct: 10 MILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHID-IVLSDVNMPNMDGY 68
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
T+RIRQ+ LP++ +TA+ + CL+ GMD
Sbjct: 69 RLTQRIRQLGL----------------------TLPVIGVTANALAEEKQRCLESGMDSC 106
Query: 981 VSKPFEEENLYRELAKFFK 999
+SKP + + + L + +
Sbjct: 107 LSKPVTLDVIKQTLTLYAE 125
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Score = 78.2 bits (192), Expect = 1e-17
Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 31/151 (20%)
Query: 859 GKKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQ------SPHCFDACFM 910
KKI +V+DN + + AL V A+ L+ + D +
Sbjct: 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILL 61
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D+ +P+ DG E I+ + +P++ ++ +
Sbjct: 62 DLNLPKKDGREVLAEIKSDPTLK--------------------RIPVVVLSTSINEDDIF 101
Query: 971 ECLKCGMDGYVSKPFEEENLY---RELAKFF 998
++ Y++K L+ + + +F+
Sbjct: 102 HSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Score = 78.2 bits (192), Expect = 1e-17
Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 28/143 (19%)
Query: 860 KKILVVDDNGVNRMVAAGALKK--FGATVECAASAKAALDKLQS------PHCFDACFMD 911
K IL+V+D+ + + LK + AA+ LQ + +D
Sbjct: 4 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLD 63
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+ +P+ DG E I+Q D +P++ +T
Sbjct: 64 LNLPKKDGREVLAEIKQNP--------------------DLKRIPVVVLTTSHNEDDVIA 103
Query: 972 CLKCGMDGYVSKPFEEENLYREL 994
+ ++ Y++K ++L++ +
Sbjct: 104 SYELHVNCYLTKSRNLKDLFKMV 126
|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase PhoQ domain species: Escherichia coli [TaxId: 562]
Score = 77.6 bits (191), Expect = 3e-17
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + VED G GIPLS +E +F + D+ G G+GL++++ + E G+I
Sbjct: 75 LYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----PGQGVGLAVAREITEQYEGKIVAGE 130
Query: 664 RPQVGSTFSFT 674
G+
Sbjct: 131 SMLGGARMEVI 141
|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase PhoQ domain species: Escherichia coli [TaxId: 562]
Score = 60.6 bits (147), Expect = 2e-11
Identities = 12/77 (15%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
L + +LD++ S ++ + KG+ +++ +S ++ +G+ F +++ N++ N+ K+
Sbjct: 3 LHPVAPLLDNLTSALNKVYQRKGVNISLDISPEIS--FVGEQNDFVEVMGNVLDNACKYC 60
Query: 514 ERGHIFVKVHLAERTMV 530
+ + + +
Sbjct: 61 LEF-VEISARQTDEHLY 76
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (187), Expect = 4e-17
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 24/130 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
I++V+D V + + G TV AS + +Q+ D +DI +P+ +G
Sbjct: 3 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENGL 61
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
TR +R+ + I+ +T L+ G D Y
Sbjct: 62 MLTRALRERS-----------------------TVGIILVTGRSDRIDRIVGLEMGADDY 98
Query: 981 VSKPFEEENL 990
V+KP E L
Sbjct: 99 VTKPLELREL 108
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 76.8 bits (188), Expect = 1e-16
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 26/135 (19%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+++L+ +D + RM A L++ G V A + A++ + H D MD++MP D
Sbjct: 4 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRD 62
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G +A I PI+ +TA + G
Sbjct: 63 GIDAASEIASKR-----------------------IAPIVVLTAFSQRDLVERARDAGAM 99
Query: 979 GYVSKPFE-EENLYR 992
Y+ KPF + +
Sbjct: 100 AYLVKPFSISDLIPA 114
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Score = 73.6 bits (180), Expect = 3e-16
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 23/137 (16%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+ VVDD+ R V AL G T + L L S D DI+MP MDG
Sbjct: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
++I+Q LP++ MTA + G
Sbjct: 63 LALLKQIKQRHP----------------------MLPVIIMTAHSDLDAAVSAYQQGAFD 100
Query: 980 YVSKPFEEENLYRELAK 996
Y+ KPF+ + + +
Sbjct: 101 YLPKPFDIDEAVALVER 117
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 73.1 bits (179), Expect = 4e-16
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVVDD+ L+ G V A AL + DA +DI MP +DG
Sbjct: 3 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-NRPDAIVLDINMPVLDGV 61
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+R M++ +P+ ++A L+ G D Y
Sbjct: 62 SVVTALRAMDN----------------------DVPVCVLSARSSVDDRVAGLEAGADDY 99
Query: 981 VSKPFEEENLYRELAKFFKSK 1001
+ KPF L + + +
Sbjct: 100 LVKPFVLAELVARVKALLRRR 120
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Score = 73.5 bits (180), Expect = 6e-16
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ ++DD+ R L+ G TV ASA AL L DI+MP MDG
Sbjct: 2 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R+I ++ LP++ +T + ++ G +
Sbjct: 61 ALFRKILALDP----------------------DLPMILVTGHGDIPMAVQAIQDGAYDF 98
Query: 981 VSKPFEEENLYRELAK 996
++KPF + L + +
Sbjct: 99 IAKPFAADRLVQSARR 114
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 73.1 bits (179), Expect = 7e-16
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+LV++D+ V R + L G VE A K A L S F+ +D+ +P+++G
Sbjct: 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYK-LLSEKHFNVVLLDLLLPDVNGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E + I++ ++ +T T E +K G +
Sbjct: 61 EILKWIKERSP----------------------ETEVIVITGHGTIKTAVEAMKMGAYDF 98
Query: 981 VSKPFEEENLYRELAKFFKSKPL 1003
++KP E + + K + + L
Sbjct: 99 LTKPCMLEEIELTINKAIEHRKL 121
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 72.0 bits (176), Expect = 1e-15
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 24/130 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
IL+V+D V R + G V A L + + MDI +P +G
Sbjct: 4 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGL 62
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R +R+ ++ ++ +T L+ G D Y
Sbjct: 63 LLARELREQA-----------------------NVALMFLTGRDNEVDKILGLEIGADDY 99
Query: 981 VSKPFEEENL 990
++KPF L
Sbjct: 100 ITKPFNPREL 109
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Score = 72.0 bits (176), Expect = 1e-15
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 23/136 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ VVDD+ R L+ G VE A L+ + P +D++MP M G
Sbjct: 4 TVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGI 62
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E ++ + +PI+ +TA +K G +
Sbjct: 63 ELQEQLTAISD----------------------GIPIVFITAHGDIPMTVRAMKAGAIEF 100
Query: 981 VSKPFEEENLYRELAK 996
+ KPFEE+ L + +
Sbjct: 101 LPKPFEEQALLDAIEQ 116
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Score = 71.2 bits (174), Expect = 2e-15
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 23/137 (16%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+ +VDD R A L G V+ SA+A L D++MP+M G
Sbjct: 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD-VRNGVLVTDLRMPDMSG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E R + ++ ++P + +T E +K G
Sbjct: 63 VELLRNLGDLKI----------------------NIPSIVITGHGDVPMAVEAMKAGAVD 100
Query: 980 YVSKPFEEENLYRELAK 996
++ KPFE+ + + +
Sbjct: 101 FIEKPFEDTVIIEAIER 117
|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.0 bits (178), Expect = 3e-15
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 47/221 (21%)
Query: 455 FNLRAILDDVLSLFSEKSRNK-GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
+ + I++ + +K G V ++ V P I+ L+ N+++ T
Sbjct: 10 LSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRAT 69
Query: 514 ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDK 573
H+ ++ + + + + ++ + G G+ D D
Sbjct: 70 MESHLDTPYNVPDVVITIANNDVDLIIR------ISDRG-------GGIAHKDLDRVMDY 116
Query: 574 FKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSS 633
+A S +F
Sbjct: 117 HFTTAEASTQDPRIS---------------------------------PLFGHLDMHSGG 143
Query: 634 TSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
S G G GL S+ E + G + S +G+
Sbjct: 144 QSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLR 184
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 70.5 bits (172), Expect = 4e-15
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+L+V+D R AL+ G V A + + L + + D +D+ +P+ DG
Sbjct: 2 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGI 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E R +RQ +P++ ++A + L G D Y
Sbjct: 61 EFIRDLRQWS-----------------------AVPVIVLSARSEESDKIAALDAGADDY 97
Query: 981 VSKPFEEENL 990
+SKPF L
Sbjct: 98 LSKPFGIGEL 107
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Score = 70.5 bits (172), Expect = 5e-15
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 23/141 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVV+D + ALKK TV+ + + + FD +DI +P DG+
Sbjct: 3 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-EPFDVVILDIMLPVHDGW 61
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E + +R+ + P+L +TA + L G D Y
Sbjct: 62 EILKSMRESGV----------------------NTPVLMLTALSDVEYRVKGLNMGADDY 99
Query: 981 VSKPFEEENLYRELAKFFKSK 1001
+ KPF+ L + + K
Sbjct: 100 LPKPFDLRELIARVRALIRRK 120
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Score = 70.1 bits (171), Expect = 6e-15
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKILVVDD + L++ G V A+ + AL K ++ D +D+ +P++DG
Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP-DLIVLDVMLPKLDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E +++RQ + PIL +TA L+ G D
Sbjct: 62 IEVCKQLRQQKL----------------------MFPILMLTAKDEEFDKVLGLELGADD 99
Query: 980 YVSKPFEEENL 990
Y++KPF +
Sbjct: 100 YMTKPFSPREV 110
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Score = 70.6 bits (172), Expect = 9e-15
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 31/151 (20%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDK---------LQSPHCFDAC 908
+ +LVV+D+ + L++ G + + ALD
Sbjct: 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVI 66
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
+D+ +P DG E + I+Q E +P++ MT
Sbjct: 67 LLDLNLPGTDGREVLQEIKQDEVLK--------------------KIPVVIMTTSSNPKD 106
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ C + Y+ KP E + L + F K
Sbjct: 107 IEICYSYSISSYIVKPLEIDRLTETVQTFIK 137
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Score = 69.4 bits (169), Expect = 1e-14
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVV+DN + R ++ G V+ A AK A L D +D+ +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP-DIAIVDLGLPDEDGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
RR R + LPIL +TA E L G D Y
Sbjct: 61 SLIRRWRSNDV----------------------SLPILVLTARESWQDKVEVLSAGADDY 98
Query: 981 VSKPFEEENL 990
V+KPF E +
Sbjct: 99 VTKPFHIEEV 108
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Score = 67.4 bits (164), Expect = 5e-14
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 26/140 (18%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KI VVDD+ + L++ G V+ + + L+ ++ F +D+ +P+ G
Sbjct: 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEA---FHVVVLDVMLPDYSG 58
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+E R I++ ++ +T + + + G D
Sbjct: 59 YEICRMIKETRP----------------------ETWVILLTLLSDDESVLKGFEAGADD 96
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV+KPF E L + +F +
Sbjct: 97 YVTKPFNPEILLARVKRFLE 116
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Score = 67.4 bits (164), Expect = 9e-14
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 23/132 (17%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
G ++L+VDDN A L V + KA + D ++ D
Sbjct: 13 GGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPV---DLVIVNAAAKNFD 69
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G T +R E ++ AM + L+ G++
Sbjct: 70 GLRFTAALRSEERTRQLPVL--------------------AMVDPDDRGRMVKALEIGVN 109
Query: 979 GYVSKPFEEENL 990
+S+P + + L
Sbjct: 110 DILSRPIDPQEL 121
|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Positive regulator of the amidase operon AmiR domain: Positive regulator of the amidase operon AmiR species: Pseudomonas aeruginosa [TaxId: 287]
Score = 68.1 bits (165), Expect = 1e-13
Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 28/129 (21%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LR ++LV++ G L + G +V A D F I
Sbjct: 9 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEA-----FDVPVDVVFTSIFQNR 63
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
A ++A+ A + ++
Sbjct: 64 HHDEIAALLAAG-----------------------TPRTTLVALVEYESPAVLSQIIELE 100
Query: 977 MDGYVSKPF 985
G +++P
Sbjct: 101 CHGVITQPL 109
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Score = 65.3 bits (158), Expect = 4e-13
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 21/141 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDD N + L V A AL +D+ MP MDGF
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPD-IILLDVMMPGMDGF 61
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R+++ + H+P++ +TA + L+ G +
Sbjct: 62 TVCRKLKDDPTTR--------------------HIPVVLITALDGRGDRIQGLESGASDF 101
Query: 981 VSKPFEEENLYRELAKFFKSK 1001
++KP ++ L+ + + K
Sbjct: 102 LTKPIDDVMLFARVRSLTRFK 122
|
| >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ROP-like superfamily: Homodimeric domain of signal transducing histidine kinase family: Homodimeric domain of signal transducing histidine kinase domain: Sensor histidine kinase TM0853 species: Thermotoga maritima [TaxId: 2336]
Score = 53.2 bits (127), Expect = 2e-09
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC---GKAL 430
R + D K++F+A +SHE+RTP+ I + ++ + ++ L
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHL 71
Query: 431 IALINEVLDRAKIEARKL 448
L+NE+LD +++E + L
Sbjct: 72 ENLLNELLDFSRLERKSL 89
|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Nitrogen regulation protein NtrB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 54.1 bits (129), Expect = 5e-09
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ + VED G GIP Q+ +F P + GGTG+GLSI++ L++ G+I
Sbjct: 84 YRLAARIDVEDNGPGIPPHLQDTLFYPMVS------GREGGTGLGLSIARNLIDQHSGKI 137
Query: 660 SFVSRPQVGSTFSFT 674
F S P + FS
Sbjct: 138 EFTSWPG-HTEFSVY 151
|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Nitrogen regulation protein NtrB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 48.3 bits (114), Expect = 4e-07
Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V ++ + + V++L S + + L +PE + DP + Q++ N+V N+++
Sbjct: 2 VTESIHKVAERVVTLVSMELP-DNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQA 59
Query: 513 TERGHIFVKVHLAERTMVKTDAKDE 537
+ + + +
Sbjct: 60 LGPEGGEIILRTRTAFQLTLHGERY 84
|
| >d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase CheA species: Thermotoga maritima [TaxId: 2336]
Score = 54.4 bits (129), Expect = 7e-09
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
++ +F+P G G+G+ + K +VE + G IS S
Sbjct: 117 LIDESKAATLSDQEILNFLFVPGFSTKEKV-SEVSGRGVGMDVVKNVVESLNGSISIESE 175
Query: 665 PQVGSTFSFT 674
G+ +
Sbjct: 176 KDKGTKVTIR 185
|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: Topoisomerase VI-B subunit species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Score = 54.1 bits (129), Expect = 1e-08
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 8/153 (5%)
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR- 636
+DA I + V V D GIGIP F + + +R
Sbjct: 35 LDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQ 94
Query: 637 HYGGTGIGLSISKCLVELMRGQ-ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE- 694
G G+G+ + ++ + + I + P + + +++ E
Sbjct: 95 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVEN 154
Query: 695 -----DLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
+ + + + ++
Sbjct: 155 TRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYI 187
|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: Topoisomerase VI-B subunit species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Score = 39.8 bits (92), Expect = 8e-04
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTD 533
Q + L+ NS+ T+ I + + +
Sbjct: 18 NPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDAR 58
|
| >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ROP-like superfamily: Homodimeric domain of signal transducing histidine kinase family: Homodimeric domain of signal transducing histidine kinase domain: EnvZ histidine kinase species: Escherichia coli [TaxId: 562]
Score = 46.8 bits (111), Expect = 2e-07
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M + ++ +A VSH++RTP+ I ++ + D A++
Sbjct: 1 MAA---GVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQD-----GYLAESINKDI 52
Query: 428 KALIALINEVLDRAK 442
+ A+I + +D +
Sbjct: 53 EECNAIIEQFIDYLR 67
|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Pyruvate dehydrogenase kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 12/91 (13%), Positives = 29/91 (31%)
Query: 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLV 506
+ V+ + + + + +E + P V+ P ++ L
Sbjct: 14 TCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELF 73
Query: 507 GNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
NS++ T + K + T K++
Sbjct: 74 KNSMRATVELYEDRKEGYPAVKTLVTLGKED 104
|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Sporulation response regulatory protein Spo0B superfamily: Sporulation response regulatory protein Spo0B family: Sporulation response regulatory protein Spo0B domain: Sporulation response regulatory protein Spo0B species: Bacillus subtilis [TaxId: 1423]
Score = 38.6 bits (88), Expect = 0.001
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADS----STSRHYGGTGIGL 645
L++ ++ G SA + + + + H IGL
Sbjct: 134 LILYLDFHGAFADPSAFDDIRQNGYEDVDIMRFEITSHECLIEIGL 179
|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Anti-sigma factor spoIIab species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.5 bits (86), Expect = 0.002
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
ED + + V D G+GIP Q +T +G+G +I + + ++
Sbjct: 71 EDGVVHLTVRDEGVGIP------DIEEARQPLFTTKPELERSGMGFTIMENFM----DEV 120
Query: 660 SFVSRPQVGSTFSFT 674
S G+T
Sbjct: 121 IVESEVNKGTTVYLK 135
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d2df7a1 | 419 | Birnavirus VP2 {Infectious bursal disease virus [T | 100.0 | |
| d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (E | 100.0 | |
| d1om4a_ | 418 | Nitric oxide (NO) synthase oxygenase domain {Rat ( | 100.0 | |
| d2gp4a2 | 418 | 6-phosphogluconate dehydratase EDD {Shewanella one | 100.0 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2csga1 | 417 | Hypothetical protein YbiU {Salmonella typhimurium | 100.0 | |
| d3bona1 | 417 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 100.0 | |
| d1gff1_ | 417 | Microvirus capsid proteins {Bacteriophage G4 [TaxI | 100.0 | |
| d1ltka_ | 417 | Phosphoglycerate kinase {Malaria parasite (Plasmod | 100.0 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1w6ga1 | 417 | Copper amine oxidase, domain 3 {Arthrobacter globi | 100.0 | |
| d1q2oa_ | 416 | Nitric oxide (NO) synthase oxygenase domain {Cow ( | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d1d8wa_ | 416 | L-rhamnose isomerase {Escherichia coli [TaxId: 562 | 100.0 | |
| d2vnud4 | 416 | Exosome complex exonuclease RRP44 {Saccharomyces c | 100.0 | |
| d1pb1a_ | 416 | Isocitrate dehydrogenase, ICDH {Escherichia coli [ | 100.0 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1dnva_ | 415 | Densovirus capsid protein {Galleria mellonella den | 100.0 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 100.0 | |
| d1so2a_ | 415 | cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p | 100.0 | |
| d16pka_ | 415 | Phosphoglycerate kinase {Trypanosoma brucei [TaxId | 100.0 | |
| d1qpga_ | 415 | Phosphoglycerate kinase {Baker's yeast (Saccharomy | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d2qeec1 | 415 | Uncharacterized protein BH0493 {Bacillus haloduran | 100.0 | |
| d2b8na1 | 414 | Putative glycerate kinase (hypothetical protein TM | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1t0la_ | 414 | NADP-dependent isocitrate dehydrogenase {Human (Ho | 100.0 | |
| d1o20a_ | 414 | Gamma-glutamyl phosphate reductase {Thermotoga mar | 100.0 | |
| d1vh4a_ | 413 | Stabilizer of iron transporter SufD {Escherichia c | 100.0 | |
| d1hdia_ | 413 | Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: | 100.0 | |
| d1zjca1 | 413 | Aminopeptidase S, AMPS {Staphylococcus aureus [Tax | 100.0 | |
| d1lwda_ | 413 | NADP-dependent isocitrate dehydrogenase {Pig (Sus | 100.0 | |
| d2qgma1 | 413 | Succinoglycan biosynthesis protein BC3205 {Bacillu | 100.0 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 100.0 | |
| d1a0tp_ | 413 | Sucrose-specific porin {Enterobacterium (Salmonell | 100.0 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 100.0 | |
| d1yzya1 | 412 | Hypothetical protein HI1011 {Haemophilus influenza | 100.0 | |
| d1ocka_ | 412 | Malonamidase E2 {Bradyrhizobium japonicum [TaxId: | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1rxxa_ | 412 | Arginine deiminase {Pseudomonas aeruginosa [TaxId: | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 100.0 | |
| d1t3ca_ | 411 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d2afaa1 | 411 | Putative NAG isomerase YihS {Salmonella typhimuriu | 100.0 | |
| d1ux5a_ | 411 | Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1izoa_ | 411 | Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis | 100.0 | |
| d2ccaa1 | 410 | Catalase-peroxidase KatG {Mycobacterium tuberculos | 100.0 | |
| d1p1ja1 | 410 | Myo-inositol 1-phosphate synthase {Baker's yeast ( | 100.0 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 100.0 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 100.0 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 100.0 | |
| d2cmza1 | 409 | Spike glycoprotein {Vesicular stomatitis indiana v | 100.0 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 100.0 | |
| d2g0da1 | 409 | Nisin biosynthesis protein NisC {Lactococcus lacti | 100.0 | |
| d1s9ra_ | 409 | Arginine deiminase {Mycoplasma arginini [TaxId: 20 | 100.0 | |
| d1b25a1 | 409 | Formaldehyde ferredoxin oxidoreductase {Archaeon P | 100.0 | |
| d1dkla_ | 409 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 100.0 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1f1oa_ | 408 | Adenylosuccinate lyase {Bacillus subtilis [TaxId: | 100.0 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 100.0 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1eu8a_ | 407 | D-maltodextrin-binding protein, MBP {Archaeon Ther | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1itka1 | 406 | Catalase-peroxidase KatG {Archaeon Haloarcula mari | 100.0 | |
| d1mwva1 | 406 | Catalase-peroxidase KatG {Burkholderia pseudomalle | 100.0 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 100.0 | |
| d1ub2a1 | 406 | Catalase-peroxidase KatG {Synechococcus sp. pcc 79 | 100.0 | |
| d2ayia1 | 406 | Aminopeptidase T {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1ei6a_ | 406 | Phosphonoacetate hydrolase {Pseudomonas fluorescen | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d2nwwa1 | 405 | Proton glutamate symport protein {Pyrococcus horik | 100.0 | |
| d1h6za3 | 405 | Pyruvate phosphate dikinase, N-terminal domain {Tr | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 100.0 | |
| d1h12a_ | 404 | Endo-1,4-beta-xylanase {Pseudoalteromonas haloplan | 100.0 | |
| d1re9a_ | 404 | Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30 | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 100.0 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1gwia_ | 403 | Cyp154c1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1ueda_ | 403 | p450 monoxygenase OxyC {Amycolatopsis orientalis [ | 100.0 | |
| d1xksa_ | 403 | Nuclear pore complex protein Nup133 {Human (Homo s | 100.0 | |
| d3b55a1 | 403 | Succinoglycan biosynthesis protein BC3120 {Bacillu | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1dofa_ | 402 | Adenylosuccinate lyase {Archaeon Pyrobaculum aerop | 100.0 | |
| d2g5da1 | 402 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 100.0 | |
| d1fp3a_ | 402 | N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) | 100.0 | |
| g1w2w.1 | 402 | Putative methylthioribose-1-phosphate isomerase Yp | 100.0 | |
| d1z8oa1 | 402 | Cytochrome P450-ERYF {Saccharopolyspora erythraea | 100.0 | |
| d1odoa_ | 401 | Cyp154a1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 100.0 | |
| d1q5da_ | 401 | Cytochrome P450epok {Sorangium cellulosum [TaxId: | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 100.0 | |
| d1jdpa_ | 401 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 100.0 | |
| d2r7da2 | 401 | Ribonuclease II family protein DR0020 {Deinococcus | 100.0 | |
| d3ovwa_ | 400 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 100.0 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 100.0 | |
| d1inpa_ | 400 | Inositol polyphosphate 1-phosphatase {Cow (Bos tau | 100.0 | |
| d2olua2 | 400 | Penicillin-binding protein 2, PBP2 {Staphylococcus | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1ojja_ | 399 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 100.0 | |
| d1jfba_ | 399 | Cytochrome P450-NOR, nitric reductase {Fungus (Fus | 100.0 | |
| d1s1fa_ | 399 | Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | 100.0 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 100.0 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1vpea_ | 398 | Phosphoglycerate kinase {Thermotoga maritima [TaxI | 100.0 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 100.0 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1q1la_ | 397 | Chorismate synthase, AroC {Aquifex aeolicus [TaxId | 100.0 | |
| d1vkoa1 | 397 | Myo-inositol 1-phosphate synthase {Caenorhabditis | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| g1f8v.1 | 395 | Alphanodavirus capsid protein {Pariacoto virus [Ta | 100.0 | |
| d1io1a_ | 395 | Phase 1 flagellin {Salmonella typhimurium [TaxId: | 100.0 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1n40a_ | 395 | Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub | 100.0 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 100.0 | |
| d1aora1 | 395 | Aldehyde ferredoxin oxidoreductase {Archaeon Pyroc | 100.0 | |
| d1nw1a_ | 395 | Choline kinase {Caenorhabditis elegans [TaxId: 623 | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1w36b2 | 395 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 100.0 | |
| d1phpa_ | 394 | Phosphoglycerate kinase {Bacillus stearothermophil | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 100.0 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1lfka_ | 394 | p450 monoxygenase OxyB {Amycolatopsis orientalis [ | 100.0 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1ldja2 | 394 | Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1xlma_ | 393 | D-xylose isomerase {Arthrobacter, strain b3728 [Ta | 100.0 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1g8ma2 | 393 | AICAR transformylase domain of bifunctional purine | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d2d0ta1 | 392 | Indoleamine 2,3-dioxygenase {Human (Homo sapiens) | 100.0 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 100.0 | |
| d1xima_ | 392 | D-xylose isomerase {Actinoplanes missouriensis [Ta | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 100.0 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1nt4a_ | 391 | Glucose-1-phosphatase {Escherichia coli [TaxId: 56 | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 100.0 | |
| d1nsca_ | 390 | Influenza neuraminidase {Influenza B virus, differ | 100.0 | |
| d1v6sa_ | 390 | Phosphoglycerate kinase {Thermus thermophilus [Tax | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1oj7a_ | 390 | Hypothetical oxidoreductase yqhD {Escherichia coli | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 100.0 | |
| d1sg6a_ | 389 | Dehydroquinate synthase, DHQS {Aspergillus nidulan | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d2o3ia1 | 389 | Hypothetical protein CV3147 {Chromobacterium viola | 100.0 | |
| d1f8ea_ | 388 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1u7la_ | 388 | Vacuolar ATP synthase subunit C {Baker's yeast (Sa | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1qxoa_ | 388 | Chorismate synthase, AroC {Streptococcus pneumonia | 100.0 | |
| d2dcfa1 | 388 | 6-aminohexanoate-dimer hydrolase NylC {Flavobacter | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 100.0 | |
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d2ex0a1 | 387 | Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteur | 100.0 | |
| d2aepa1 | 387 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1zeea1 | 387 | Hypothetical protein SO4414 {Shewanella oneidensis | 100.0 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 100.0 | |
| d1zsqa2 | 387 | Myotubularin-related protein 2, C-terminal domain | 100.0 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1bxba_ | 387 | D-xylose isomerase {Thermus aquaticus, subsp. Ther | 100.0 | |
| d2qp8a1 | 387 | beta-secretase (memapsin) {Human (Homo sapiens) [T | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1muwa_ | 386 | D-xylose isomerase {Streptomyces olivochromogenes | 100.0 | |
| d3c10a1 | 386 | Histone deacetylase 7, HDAC7 {Human (Homo sapiens) | 100.0 | |
| d1v5da_ | 386 | Chitosanase {Bacillus sp., strain k17 [TaxId: 1409 | 100.0 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 100.0 | |
| d1ir6a_ | 385 | Exonuclease RecJ {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 100.0 | |
| d1xmxa_ | 385 | Hypothetical protein VC1899 {Vibrio cholerae [TaxI | 100.0 | |
| d1uhga_ | 385 | Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | 100.0 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1n97a_ | 385 | Cyp175a1 {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d2c5wb1 | 385 | Penicillin-binding protein 1a, transpeptidase doma | 100.0 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 100.0 | |
| d2ix0a4 | 385 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 100.0 | |
| d3c0na2 | 384 | (Pro)aerolysin, pore-forming lobe {Aeromonas hydro | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d1mtyb_ | 384 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1hn0a1 | 384 | Chondroitin ABC lyase I {Proteus vulgaris [TaxId: | 100.0 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1u7ga_ | 383 | Ammonium transporter AmtB {Escherichia coli [TaxId | 100.0 | |
| d1vz6a_ | 383 | Glutamate N-acetyltransferase 2 (ornithine acetylt | 100.0 | |
| d1mhyb_ | 383 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1bo1a_ | 383 | Phosphatidylinositol phosphate kinase IIbeta, PIPK | 100.0 | |
| d1imva_ | 383 | Pigment epithelium-derived factor, PEDF {Human (Ho | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1t1ua1 | 382 | Choline O-acetyltransferase {Rat (Rattus norvegicu | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1xl7a1 | 382 | Peroxisomal carnitine O-octanoyltransferase, COT { | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1t6ex_ | 381 | Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu | 100.0 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 100.0 | |
| d1odza_ | 381 | Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr | 100.0 | |
| d1by7a_ | 381 | Plasminogen activator inhibitor-2 {Human (Homo sap | 100.0 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d3bvua3 | 381 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1vbga3 | 380 | Pyruvate phosphate dikinase, N-terminal domain {Ma | 100.0 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1qyia_ | 380 | Hypothetical protein MW1667 (SA1546) {Staphylococc | 100.0 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 100.0 | |
| d1elja_ | 380 | D-maltodextrin-binding protein, MBP {Archaeon Pyro | 100.0 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 100.0 | |
| d1lj5a_ | 379 | Plasminogen activator inhibitor-1 {Human (Homo sap | 100.0 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 100.0 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 100.0 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 100.0 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 100.0 | |
| d1xqga_ | 378 | Maspin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d1a59a_ | 377 | Citrate synthase {Antarctic bacterium DS2-3R [TaxI | 100.0 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d2i71a1 | 377 | Hypothetical protein SSO1389 {Sulfolobus solfatari | 100.0 | |
| d2d5ja1 | 377 | Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 | 100.0 | |
| d1jmma_ | 377 | V-region of surface antigen I/II (SA I/II, PAC) {S | 100.0 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 100.0 | |
| d1ci9a_ | 377 | Esterase EstB {Burkholderia gladioli [TaxId: 28095 | 100.0 | |
| d1nm8a1 | 377 | Carnitine acetyltransferase {Human (Homo sapiens) | 100.0 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 100.0 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 100.0 | |
| d1k9oi_ | 376 | Alaserpin (serpin 1) {Tobacco hornworm (Manduca se | 100.0 | |
| d2v3qa1 | 376 | PstS-like phosphate-binding protein {Human (Homo s | 100.0 | |
| d1wu4a1 | 376 | Xylanase Y {Bacillus halodurans [TaxId: 86665]} | 100.0 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 100.0 | |
| d2fug41 | 375 | NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus | 100.0 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| g1hle.1 | 375 | Elastase inhibitor {Horse (Equus caballus) [TaxId: | 100.0 | |
| d1kbla3 | 375 | Pyruvate phosphate dikinase, N-terminal domain {Cl | 100.0 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1txka2 | 374 | Glucans biosynthesis protein G (MdoG, OpgG), N-ter | 100.0 | |
| d1ioma_ | 374 | Citrate synthase {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d2a0ua1 | 374 | Initiation factor 2b {Leishmania major [TaxId: 566 | 100.0 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 100.0 | |
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 100.0 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 100.0 | |
| d1rp4a_ | 374 | Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast | 100.0 | |
| d1so7a_ | 374 | Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2bvca2 | 374 | Glutamine synthetase, C-terminal domain {Mycobacte | 100.0 | |
| d1kfwa1 | 374 | Psychrophilic chitinase B {Arthrobacter sp., tad20 | 100.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 100.0 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 100.0 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 100.0 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 100.0 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 100.0 | |
| d1miqa_ | 373 | Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo | 100.0 | |
| d1m0wa2 | 373 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d1r5ya_ | 372 | Queosine tRNA-guanine transglycosylase {Zymomonas | 100.0 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 100.0 | |
| d1c3pa_ | 372 | HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1qlpa_ | 372 | Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1vkpa_ | 372 | Agmatine iminohydrolase {Thale-cress (Arabidopsis | 100.0 | |
| g1htr.1 | 372 | Pepsin(ogen) {Human (Homo sapiens), progastricsin | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| d1mkfa_ | 371 | Viral chemokine binding protein m3 {Murid herpesvi | 100.0 | |
| d1to6a_ | 371 | Glycerate kinase GlxK {Neisseria meningitidis, (se | 100.0 | |
| d1r53a_ | 371 | Chorismate synthase, AroC {Baker's yeast (Saccharo | 100.0 | |
| d1c8ba_ | 371 | Germination protease {Bacillus megaterium [TaxId: | 100.0 | |
| d1aj8a_ | 371 | Citrate synthase {Archaeon Pyrococcus furiosus [Ta | 100.0 | |
| d1n7oa1 | 371 | Hyaluronate lyase {Streptococcus pneumoniae [TaxId | 100.0 | |
| d1f1sa1 | 371 | Hyaluronate lyase {Streptococcus agalactiae [TaxId | 100.0 | |
| d1eg1a_ | 371 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1r85a_ | 371 | Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: | 100.0 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 100.0 | |
| d2dexx3 | 370 | Peptidylarginine deiminase Pad4, catalytic C-termi | 100.0 | |
| d2gx8a1 | 370 | Nif3-related protein BC4286 {Bacillus cereus [TaxI | 100.0 | |
| d2hgsa4 | 370 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 100.0 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 100.0 | |
| d3psga_ | 370 | Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | 100.0 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 100.0 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 100.0 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 100.0 | |
| d2ewoa1 | 369 | Agmatine iminohydrolase {Streptococcus mutans [Tax | 100.0 | |
| d1itua_ | 369 | Renal dipeptidase {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d1rwha1 | 369 | Chondroitinase AC {Arthrobacter aurescens [TaxId: | 100.0 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 100.0 | |
| d2heka1 | 369 | Hypothetical protein aq_1910 {Aquifex aeolicus [Ta | 100.0 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 100.0 | |
| g1as4.1 | 369 | Antichymotrypsin, alpha-1 {Human (Homo sapiens) [T | 100.0 | |
| d1laxa_ | 369 | D-maltodextrin-binding protein, MBP {Escherichia c | 100.0 | |
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1r8ga_ | 368 | Carboxylate-amine ligase YbdK {Escherichia coli [T | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 100.0 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1f52a2 | 368 | Glutamine synthetase, C-terminal domain {Salmonell | 100.0 | |
| d1pyya4 | 368 | Penicillin-binding protein 2x (pbp-2x), transpepti | 100.0 | |
| d1qw9a2 | 367 | Alpha-L-arabinofuranosidase, catalytic domain {Bac | 100.0 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 100.0 | |
| d1ursa_ | 367 | D-maltodextrin-binding protein, MBP {Alicyclobacil | 100.0 | |
| d1o7xa_ | 367 | Citrate synthase {Archaeon Sulfolobus solfataricus | 100.0 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 100.0 | |
| d1iuqa_ | 367 | Glycerol-3-phosphate (1)-acyltransferase {Cushaw s | 100.0 | |
| d1b65a_ | 367 | L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochr | 100.0 | |
| d1ue8a_ | 367 | Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 100.0 | |
| d1moqa_ | 366 | "Isomerase domain" of glucosamine 6-phosphate synt | 100.0 | |
| d1io7a_ | 366 | Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2 | 100.0 | |
| d1u5ua_ | 366 | Allene oxide synthase-lipoxygenase protein, N-term | 100.0 | |
| d1h6za1 | 366 | Pyruvate phosphate dikinase, C-terminal domain {Tr | 100.0 | |
| d2bvya2 | 366 | Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708] | 100.0 | |
| d1jq5a_ | 366 | Glycerol dehydrogenase {Bacillus stearothermophilu | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 100.0 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d1fn9a_ | 365 | Outer capsid protein sigma 3 {Reovirus [TaxId: 108 | 100.0 | |
| d1um0a_ | 365 | Chorismate synthase, AroC {Helicobacter pylori [Ta | 100.0 | |
| d2pnwa1 | 365 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 100.0 | |
| d3c8ya1 | 365 | Fe-only hydrogenase, catalytic domain {Clostridium | 100.0 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 100.0 | |
| d1t64a_ | 364 | Histone deacetylase 8, HDAC8 {Human (Homo sapiens) | 100.0 | |
| d2jera1 | 364 | Agmatine iminohydrolase {Enterococcus faecalis [Ta | 100.0 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1kq3a_ | 364 | Glycerol dehydrogenase {Thermotoga maritima [TaxId | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d1kbla1 | 364 | Pyruvate phosphate dikinase, C-terminal domain {Cl | 100.0 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 100.0 | |
| d1oc7a_ | 364 | Cellobiohydrolase II (Cel6) {Humicola insolens, Ce | 100.0 | |
| d1us3a2 | 364 | Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 100.0 | |
| d1m7va_ | 363 | Nitric oxide (NO) synthase oxygenase domain {Bacil | 100.0 | |
| d1khba1 | 363 | Cytosolic phosphoenolpyruvate carboxykinase (GTP-h | 100.0 | |
| d1zaia1 | 363 | Fructose-1,6-bisphosphate aldolase {Rabbit (Orycto | 100.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 100.0 | |
| d1cnza_ | 363 | 3-isopropylmalate dehydrogenase, IPMDH {Salmonella | 100.0 | |
| d1zq1a2 | 363 | Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1kwfa_ | 363 | CelA cellulase {Clostridium thermocellum [TaxId: 1 | 100.0 | |
| d2a1ha1 | 363 | Branched-chain aminoacid aminotransferase {Human ( | 100.0 | |
| d1nc5a_ | 363 | Hypothetical protein YteR {Bacillus subtilis [TaxI | 100.0 | |
| d1onha_ | 363 | AMPC beta-Lactamase, class C {Enterobacter cloacae | 100.0 | |
| d1gqea_ | 362 | Polypeptide chain release factor 2 (RF2) {Escheric | 100.0 | |
| d1umga_ | 362 | ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1nqka_ | 362 | Alkanesulfonate monooxygenase SsuD {Escherichia co | 100.0 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 100.0 | |
| d1vlca_ | 362 | 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga | 100.0 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 100.0 | |
| d3thia_ | 362 | Thiaminase I {Paenibacillus thiaminolyticus [TaxId | 100.0 | |
| d1qjwa_ | 362 | Cellobiohydrolase II (Cel6) {Trichoderma reesei, C | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d2drwa1 | 362 | D-Amino acid amidase DaaA {Ochrobactrum anthropi [ | 100.0 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 100.0 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 100.0 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1x1ia1 | 361 | Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | 100.0 | |
| d1dhsa_ | 361 | Deoxyhypusine synthase, DHS {Human (Homo sapiens) | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 100.0 | |
| d1lt7a_ | 361 | Betaine-homocysteine S-methyltransferase {Human (H | 100.0 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1qo5a_ | 360 | Fructose-1,6-bisphosphate aldolase {Human (Homo sa | 100.0 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 100.0 | |
| d1sq1a_ | 360 | Chorismate synthase, AroC {Campylobacter jejuni [T | 100.0 | |
| d1xfia_ | 360 | Hypothetical protein At2g17340 {Thale cress (Arabi | 100.0 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 100.0 | |
| d1jdwa_ | 360 | L-arginine: glycine amidinotransferase {Human (Hom | 100.0 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 100.0 | |
| d1oxwa_ | 360 | Patatin {Heartleaf nightshade (Solanum cardiophyll | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 100.0 | |
| d4bcla_ | 359 | Bacteriochlorophyll A protein {Prosthecochloris ae | 100.0 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1yvra1 | 359 | 60-kda SS-aARo ribonucleoprotein {African clawed f | 100.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 100.0 | |
| d2hrca1 | 359 | Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 100.0 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 100.0 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 100.0 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 100.0 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 100.0 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 100.0 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 100.0 | |
| g1lq8.1 | 358 | Protein C inhibitor {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2hdsa1 | 358 | AMPC beta-Lactamase, class C {Escherichia coli, ce | 100.0 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 100.0 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 100.0 | |
| d1edqa2 | 358 | Chitinase A, catalytic domain {Serratia marcescens | 100.0 | |
| d1taza_ | 357 | Catalytic domain of cyclic nucleotide phosphodiest | 100.0 | |
| d2qapa1 | 357 | Fructose-1,6-bisphosphate aldolase {Trypanosome (L | 100.0 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1a05a_ | 357 | 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 100.0 | |
| d1yyda1 | 357 | Fungal peroxidase (ligninase) {Basidomycetos fungu | 100.0 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 100.0 | |
| d1mppa_ | 357 | Pepsin {Mucor pusillus [TaxId: 4840]} | 100.0 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d16vpa_ | 356 | Conserved core of transcriptional regulatory prote | 100.0 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 100.0 | |
| d2ebsa2 | 356 | Oligoxyloglucan reducing end-specific cellobiohydr | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1lbqa_ | 356 | Ferrochelatase {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1v53a1 | 356 | 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c | 100.0 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 100.0 | |
| d1vbga1 | 356 | Pyruvate phosphate dikinase, C-terminal domain {Ma | 100.0 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 100.0 | |
| d1goia2 | 356 | Chitinase B, catalytic domain {Serratia marcescens | 100.0 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 100.0 | |
| d1luca_ | 355 | Bacterial luciferase alpha chain, LuxA {Vibrio har | 100.0 | |
| g1mtp.1 | 355 | Thermopin {Thermobifida fusca [TaxId: 2021]} | 100.0 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1fuia2 | 355 | L-fucose isomerase, N-terminal and second domains | 100.0 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 |
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=31716.24 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~w~~~~~~~~~~~~~viYe~~~~~f~~~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G 80 (420)
T d2bhua3 1 TFDWTDADWHGIKLADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYG 80 (420)
T ss_dssp SSCCCCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96899989798884224899996002188999999998679999769998995998768888998888566888685659
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~dlN~~np~v~~~~~~~~~~Wl~~~GVD 160 (420)
T d2bhua3 81 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFD 160 (420)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
T ss_conf 99999999999974054534465535667777633334443334554322345545368699999988764032014653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (420)
T d2bhua3 161 GLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYAGYR 240 (420)
T ss_dssp EEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTHHHHHHHHHHHCCCSGGGGGCC
T ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 78873333202122310079998888764687425620357753121001125422323210444301334445312330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~~~~k~a~~~ll 320 (420)
T d2bhua3 241 GGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLL 320 (420)
T ss_dssp CSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCHHHHHCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 26678999985144446520443153554126433455213034321566323553112356643565999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 t~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 400 (420)
T d2bhua3 321 TLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHART 400 (420)
T ss_dssp HSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHHHHHTTSCCSGGGGSHHHHHH
T ss_pred HCCCCCEEECCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHH
T ss_conf 48998798577511789986323456402203544466311367776665557886555544456678788623476899
Q ss_pred -------------------E
Q ss_conf -------------------9
Q 001846 864 -------------------V 864 (1006)
Q Consensus 864 -------------------V 864 (1006)
=
T Consensus 401 ~~~yr~Li~lRk~~p~l~~~ 420 (420)
T d2bhua3 401 LRLYRDLLRLRREDPVLHNR 420 (420)
T ss_dssp HHHHHHHHHHHHHCTTTTCC
T ss_pred HHHHHHHHHHHHCCHHHHCC
T ss_conf 99999999999568987575
|
| >d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Positive stranded ssRNA viruses family: Birnaviridae-like VP domain: Birnavirus VP2 species: Infectious bursal disease virus [TaxId: 10995]
Probab=100.00 E-value=0 Score=31656.42 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~ylksll~PetgpasIPDD~~~rH~l~~etstyNL~~~~sGsGllv~fp~~P~s~vGaHY~~~~~~~l~FDq~l~TsQ 80 (419)
T d2df7a1 1 IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQ 80 (419)
T ss_dssp CCHHHHHHHCGGGCCCCCCSSCCCCBEEEEEEEEEEEECCTTSCEEEEECTTCSSSEEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHH
T ss_conf 91465554285678878971788877542033045369726885699991799875210278972788576465556667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 dLkk~~nYgRliSr~~~i~SstLPaGvYAlnGT~Na~tf~GslSEv~~~sYn~lmS~ttN~~DKv~NvLV~~GVtVLsLP 160 (419)
T d2df7a1 81 NLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLP 160 (419)
T ss_dssp CGGGTEEEEEEEEEEEEEEECCCCTTCCBCCCEEEEEEESSCGGGCSCCSTTGGGGSCSCGGGEEEEEETTTCEEEECCC
T ss_pred HHHHHHCHHHHHCEEEEEEECCCCCEEEEECCEEEEEEEECCHHHHHCCCHHHHEECCCCHHHHHCCEEECCCEEEEECC
T ss_conf 66766333321002466651357743455246154589824667600246101002126802530789823864999757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 TgfD~pYVRLgDetP~~gl~p~~~a~ct~a~~PR~Y~I~~a~~yq~~sq~q~gGtt~Tlfs~NiDavtSlsVtGdivFq~ 240 (419)
T d2df7a1 161 TSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHT 240 (419)
T ss_dssp SCSSCCCEECCEECCCCCSCTTCCCEECCCSSCEEEEEEEEEEEEEEEECCTTCEEEEEEEEEEEESSCEEEEEEEEEEC
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 66788735647888765778765430365568733575367545547755678688898750001104267400699972
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~dati~~IG~DGt~vi~~avas~nGlt~G~dn~~pfnlviPT~eITqPITsIKLeivt~k~gg~ag~~~s~~~~ 320 (419)
T d2df7a1 241 SVHGLALDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSAS 320 (419)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEECCTTSCEEEEEEEEECGGGCCSCEEEEEEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 36651873799996326974788899706765356355443103236776775512789999952136754753222456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 gs~svT~~gGN~PGvLRPvTlVAYE~vapgsilTVaGVSNyELIPNPeL~KN~~t~yG~~dP~~l~y~K~iLs~Re~L~i 400 (419)
T d2df7a1 321 GSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGI 400 (419)
T ss_dssp EEEEEEETTTTSTTSSCCEEEEEEESCCTTCEEEEEEEEEEEEEECHHHHTTCCCBCCCCCTTHHHHHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHCCHHHHHHCCHHHCCC
T ss_conf 64699965887778768658999840257746999602451324897897406332356583434288777434311486
Q ss_pred ------------------E
Q ss_conf ------------------9
Q 001846 864 ------------------V 864 (1006)
Q Consensus 864 ------------------V 864 (1006)
|
T Consensus 401 rtvw~~~~Y~~~~~~f~e~ 419 (419)
T d2df7a1 401 KTVWPTREYTDFREYFMEV 419 (419)
T ss_dssp CSEEEHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHCC
T ss_conf 3660277878999887439
|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=31645.46 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 M~~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~~~~~I~~~~~~~~ 80 (419)
T d1ejda_ 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNF 80 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSSEEEECTTCCCC
T ss_pred CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCC
T ss_conf 98699948890477997888389999999999984998999259901999999999997799899898799989997777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g~l~g~~~~~~~ 160 (419)
T d1ejda_ 81 SAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDK 160 (419)
T ss_dssp EECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSSSCBCCEEECSS
T ss_pred CCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCEEECCC
T ss_conf 66554540354320024425665277524666643457774267889998536169962892445337886674674587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V~~D~ssAa~~~~ 240 (419)
T d1ejda_ 161 VSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV 240 (419)
T ss_dssp CCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEECCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 62567788984455237963542024441566677776522010011795499980542346774053570664311333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 aa~i~g~~i~i~~~~~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 320 (419)
T d1ejda_ 241 AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGT 320 (419)
T ss_dssp HHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSE
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCC
T ss_conf 22156865521677806778898876642313997377699997676544300256632234421145541222187361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiAMa~aia~l~~~g~~~I~~~~~i~~SyP 400 (419)
T d1ejda_ 321 GVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYE 400 (419)
T ss_dssp EEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSS
T ss_pred EEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCH
T ss_conf 67764023438789999996889799969999997999863761613838999999999981999499836137868734
Q ss_pred ------------------E
Q ss_conf ------------------9
Q 001846 864 ------------------V 864 (1006)
Q Consensus 864 ------------------V 864 (1006)
=
T Consensus 401 ~F~~~l~~LGa~I~~~~~~ 419 (419)
T d1ejda_ 401 RIEDKLRALGANIERVKGE 419 (419)
T ss_dssp SHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHCCCEEEEECCC
T ss_conf 0999999679899997179
|
| >d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=31579.26 Aligned_cols=1 Identities=0% Similarity=-1.589 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~p~~~~~~p~~~~~~e~ll~~A~~Fi~qyy~e~~~~~~~~~~ 80 (418)
T d1om4a_ 1 RFLKVKNWETDVVLTDTLHLKSTLETGCTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSSIKRFGSKAHM 80 (418)
T ss_dssp CCEEEEBTTTCCEEEECGGGGCCSCCSCCSSCBCTTCSCC-----------CHHHHHHHHHHHHHHHHHHTTCTTSHHHH
T ss_pred CCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 95245540478756320434167889987564366222453457888889987899999999999999863435868999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Rl~ev~~eI~~tGtY~~T~~EL~~GAk~AWRNs~RCIGRi~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~Ir~~ 160 (418)
T d1om4a_ 81 DRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSA 160 (418)
T ss_dssp HHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSCCCE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999997455620899999887899870454233500116571565678999899999999999997079987623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ITVFpp~~~~~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLviq~~g~~p~~feiP~ 240 (418)
T d1om4a_ 161 ITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQGWKAPRGRFDVLPLLLQANGNDPELFQIPP 240 (418)
T ss_dssp EEECCCCSSSSSCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEECTTCCCEEECCCG
T ss_pred EEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEECCH
T ss_conf 89737988899986565488886626568998764783137999999976898999987702089997899972574887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYN~L~~VA~~mGLDT 320 (418)
T d1om4a_ 241 ELVLEVPIRHPKFDWFKDLGLKWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDM 320 (418)
T ss_dssp GGCCEEECCCSSCTTGGGGCCEEESCCCBCSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHHTCCC
T ss_pred HHEEEECCCCCCCHHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78246435598975477559837625011365232088855346745341123365415667565664899999849788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~Sgs~tpvfH~~~~n~ 400 (418)
T d1om4a_ 321 RKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNY 400 (418)
T ss_dssp SCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGGGSGGGGBCCCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 99740577889999999999899887964805278999999999999981899998852777888653441677765353
Q ss_pred -----------------E
Q ss_conf -----------------9
Q 001846 864 -----------------V 864 (1006)
Q Consensus 864 -----------------V 864 (1006)
-
T Consensus 401 ~l~P~f~yq~~~w~th~w 418 (418)
T d1om4a_ 401 RLTPSFEYQPDPWNTHVW 418 (418)
T ss_dssp CCSSEEECCCCGGGTCCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 147886557986446789
|
| >d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IlvD/EDD N-terminal domain-like superfamily: IlvD/EDD N-terminal domain-like family: lvD/EDD N-terminal domain-like domain: 6-phosphogluconate dehydratase EDD species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=31571.17 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~i~~vt~rI~~RS~~~r~~Yl~~i~~~~~~~~~r~~l~c~nlAh~~aa~~~~dk~~l~d~~kP~IGIvns~~d~~pc 80 (418)
T d2gp4a2 1 MHSVVQSVTDRIIARSKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSA 80 (418)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97179999999999708779999999999875488711135521777887068302556763179969998352346464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 h~hl~~l~~~vK~gv~~~gg~~~~~~~~p~~cDGit~G~~GM~~SL~SRelIA~siE~~~~~~~~Dg~V~l~~CDK~vPG 160 (418)
T d2gp4a2 81 HQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPG 160 (418)
T ss_dssp ---------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH
T ss_conf 24299999999999997178663567645534651378653013130022789899998624765617997338998768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~lMaa~r~n~lPsI~v~gGpm~~G~~~~~~~~~~~~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~~l~EalGl~ 240 (418)
T d2gp4a2 161 LLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQ 240 (418)
T ss_dssp HHHHHHTTTTSCEEECCCCC-------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCS
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999843678779971577689746777725753032233569999999874668878663267798999999971567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 LPGsa~vpa~~~~r~~~a~~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA~eaGi~l~l 320 (418)
T d2gp4a2 241 LPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNW 320 (418)
T ss_dssp CTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCH
T ss_conf 52124788861899999998999999999851267897786199999711168760562675320629999654898989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~dfd~is~~~P~L~~l~P~G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~i~~~~~p~~ 400 (418)
T d2gp4a2 321 DDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTV 400 (418)
T ss_dssp HHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSS
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 99999857888544441598621889876069999999998788856999883886799997077766774000468777
Q ss_pred -----------------E
Q ss_conf -----------------9
Q 001846 864 -----------------V 864 (1006)
Q Consensus 864 -----------------V 864 (1006)
=
T Consensus 401 ~~d~~VIrp~~~P~~~~G 418 (418)
T d2gp4a2 401 SLDTEVLTSVATPFQNNG 418 (418)
T ss_dssp CSCTTTBCCSSSCSBSSC
T ss_pred CCCCCEECCCCCCCCCCC
T ss_conf 899887576555779999
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=31571.15 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~pRw~~i~r~yta~dv~~lrgs~~~~~~~a~~~a~~Lr~lL~~~~~v~~~Ga~d~~~A~~~ 80 (418)
T d1f61a_ 1 ASVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQ 80 (418)
T ss_dssp CCCTTCCCCHHHHHHHHHHCGGGTTCCCSSCHHHHHHTSTTCCCCCHHHHHHHHHHHHHHHHSSCEEEEBCCSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 98456504599999998629882778799899999986688775425789999999999836997884144778999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~~~~~~~PIIaDaDtGfG~ 160 (418)
T d1f61a_ 81 VRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGG 160 (418)
T ss_dssp HHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCSSCCEEEECTTCSSS
T ss_pred HHHCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 98199889854276523454556886665555167899999999988788999998740466433567768753333453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~nv~rtvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~s~ 240 (418)
T d1f61a_ 161 ALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSD 240 (418)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCC
T ss_conf 78999999999983786899734677776556667766688999999999998766437998489997160232355333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~~~~~~ee~~~f~~~v~~~~~~~~l~~~~sPsf~w 320 (418)
T d1f61a_ 241 VDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNW 320 (418)
T ss_dssp CSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHTTCTTCEEEEECCSSSCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf 43233444455457664001457789999999963543671885057899999999986248873332035676567770
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~~eL~~~Gy~~~~i~la~~~a~~~a~~~la~~~~~~Gm~ay~elQ~re~~~~~~Gy~~~khQ~~vG~~ 400 (418)
T d1f61a_ 321 KKHLDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGAG 400 (418)
T ss_dssp HHHSCHHHHHHHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCCTTSHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCC
T ss_conf 11467766543399999609629996138999999999999999986676277877658888874698556401330532
Q ss_pred -----------------E
Q ss_conf -----------------9
Q 001846 864 -----------------V 864 (1006)
Q Consensus 864 -----------------V 864 (1006)
+
T Consensus 401 y~D~~~~~~~~~~s~~a~ 418 (418)
T d1f61a_ 401 YFDRIATTVDPNSSTTAL 418 (418)
T ss_dssp HHHHHHHHHCTTSCCCCC
T ss_pred HHHHHHHHHCCCHHHHCC
T ss_conf 788889884787053139
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=0 Score=31564.79 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~ 80 (418)
T d2r5ea1 1 KFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYS 80 (418)
T ss_dssp CCCCCGGGTTCCCCHHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98643464179988999999986589988716889999889999999999983899667678998788999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (418)
T d2r5ea1 81 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLD 160 (418)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECC
T ss_pred HHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98599999641589917973321100222013333200122345004678987498699997214556663055666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~ 240 (418)
T d2r5ea1 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 88776654114441241786865443331888777753442178122102102120157876531003655543145665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d2r5ea1 241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57754268876445323431133444211222333345620210122233222334453256788888988764667766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~ 400 (418)
T d2r5ea1 321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKK 400 (418)
T ss_dssp HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 76428701379812499787223565111012034467899999999878999968256478877667899899995699
Q ss_pred -----------------E
Q ss_conf -----------------9
Q 001846 864 -----------------V 864 (1006)
Q Consensus 864 -----------------V 864 (1006)
-
T Consensus 401 ~e~l~~a~~rl~~~lg~~ 418 (418)
T d2r5ea1 401 DENLQKAAEILRKWKGSS 418 (418)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987359
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31562.56 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~r~~~~~~~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~ 80 (418)
T d1w7la_ 1 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL 80 (418)
T ss_dssp CCSCGGGTTCCCCTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97670002799899999999747899788889889998899999999999857974468899867899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d 160 (418)
T d1w7la_ 81 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 160 (418)
T ss_dssp HTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECC
T ss_pred HCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58998810115642585799999998622677615304556600689999749874014566542223443224575300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~ 240 (418)
T d1w7la_ 161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEC
T ss_conf 55430223566531112676776564333889999999998629871155666775158989989777165445552001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 241 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56764268877434322320255553023322322232025677887765222333344332223102333200012345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECC
T ss_conf 66438812379820499887710002320101345553589999999997999997454426787667779979999738
Q ss_pred -----------------E
Q ss_conf -----------------9
Q 001846 864 -----------------V 864 (1006)
Q Consensus 864 -----------------V 864 (1006)
=
T Consensus 401 ~~~~l~~a~~rl~~~~~~ 418 (418)
T d1w7la_ 401 DEATLQAMDEKLRKWKVE 418 (418)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998667
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31499.17 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 98665715899999999999999999999999999802999999999999999999999999999999817539999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999988763014678889999877650122233202211222344113456777788765403554455300012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T d1pv7a_ 161 MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33456653211003489999999999842332102322002320233222211001222222110246688999887641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T d1pv7a_ 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT 320 (417)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 22222222223333210000011222223322221024444200122210003657888886520113322111457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998798489999999999999999999999999999997989999999999999999999753
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
-
T Consensus 401 ~~~~~~~~~r~~~~e~a 417 (417)
T d1pv7a_ 401 SGPGPLSLLRRQVNEVA 417 (417)
T ss_dssp CCSSCTTHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHCCCC
T ss_conf 27785436675323379
|
| >d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: YbiU-like domain: Hypothetical protein YbiU species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31495.91 Aligned_cols=1 Identities=0% Similarity=0.603 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~~iIPeI~F~dI~~~~~~~~~~~~I 80 (417)
T d2csga1 1 TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEV 80 (417)
T ss_dssp CTTCCSSCCSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCHHHHHTTCCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf 99876678898389999999999965678999999999999999999999996199985065589952678998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 krrG~vVIRnV~p~e~a~~w~~~l~~Yle~n~~~~~~~~~~d~~f~~lp~~~pqiy~lyws~~q~~aR~~p~~~~~~~~l 160 (417)
T d2csga1 81 KRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQSFL 160 (417)
T ss_dssp HHHSEEEETTSSCHHHHHHHHHHHHHHHHHTTHHHHCCCCCCCTTTTSSSCCCSSCCCCCBHHHHHHHHCHHHHHHHHHH
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 86188998887899999999999999998286420036864310012355677744242689999874495899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~lw~~~~~~~~~~~~~~~l~y~DR~r~r~Pg~~~~~l~pH~D~Gs~erW~d~~y~~~y~~if~g~we~ydPw~~~~R~~ 240 (417)
T d2csga1 161 NRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFASVFNGNVEQYDPWNAAHRTD 240 (417)
T ss_dssp HTTSBCCSSSSCSSEEEEECCCCCCEECCCTTCCBCCEEEEECSCSTHHHHCHHHHHHTHHHHTSCGGGCCTTBCTTGGG
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 85202368866412577743045503137999876786755689850103563125688887558842279876423320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~l~~~~~~cs~FR~fQGwlaLs~~~p~dGtL~v~P~~~~~ay~llrpf~~d~~~~~~~g~~pg~~~~~~~~~h~~l~ 320 (417)
T d2csga1 241 VEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLM 320 (417)
T ss_dssp CCCCCCTTCCCCCSCCSEEEEEESSCBCTTSSCEEECCCGGGHHHHHHGGGSTTSCTTCCTTCCTTSCEECCTTTCHHHH
T ss_pred CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 00034478765414778887752366788887379963403577887240125556655677776655545633315650
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~v~ip~~~pGD~V~Wh~d~iH~v~~~~~g~~~s~V~Yi~~~P~~~~N~~yl~~qr~aF~~g~~ppdFp~~~~E~~~~g 400 (417)
T d2csga1 321 AALTSIPPLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFPREDYETTWEG 400 (417)
T ss_dssp TTCEECCCBCTTCEEEEETTCCEEECCBSSCSSCCCEEECCBCEESHHHHHHHHHHHHHHHHTCCCTTSCSCCGGGSCSS
T ss_pred CCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86155245688887887078753446678999865389842788846559999999999975999877789987543356
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
+
T Consensus 401 r~~~~~ls~~G~r~mGL 417 (417)
T d2csga1 401 RFTLRDLNIHGKRALGI 417 (417)
T ss_dssp BCCGGGCCHHHHHHTTC
T ss_pred CCCHHHCCHHHHHHCCC
T ss_conf 88946528999986289
|
| >d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]
Probab=100.00 E-value=0 Score=31495.91 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~nnnFNyndPVnn~~Ily~~~p~~~~~~~~KAF~I~~nIWIiPER~~~~~~~~~d~~~p~~~~~~~~~yYDpnyLsTD~ 80 (417)
T d3bona1 1 FVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDN 80 (417)
T ss_dssp CCSCCCCTTSCCCSSSEEEEECC--CCCCCEEEEEEETTEEEEEEECCSSCTTCCSCSCC----CCSSCCCCTTTTCSHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCH
T ss_conf 96677777898899718999567788776034477426768830343567888666689701025876412753245613
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 EKD~FLk~~IKLf~RINsn~~G~~LL~~I~~aiPflG~s~~~~~~~~~~~~svni~~~~g~~~~~~~NlvIfGPgpnI~e 160 (417)
T d3bona1 81 EKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQ 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCBCCSSTTEEBCCGGGEEEEECTTSCEEEEECSEEEEECCSSTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCC
T ss_conf 78899999999999854857899999999726877789988711256641157764489854554215899889863145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 n~~~~~~~~~~n~s~~GfGsi~~i~FsPe~~~~f~~~~~~~~~~~~~~~~F~~DPAl~L~heLIhsLh~LYGik~~~~~~ 240 (417)
T d3bona1 161 FECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRV 240 (417)
T ss_dssp CEEECCCCSSCCTTTSSCCCCEEEECCTTEEEEECSSHHHHTCTTSCCCCEECCHHHHHHHHHHHHHHHHTTCCCCTTCE
T ss_pred CCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 54323034457733047650589997764377604533455555545343542889999999999988760756788741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~i~~eEl~tFGG~D~~iI~~~~~~~~~~k~l~~yk~Ia~rl~kvn~~~~~~~~l~~yK~~F~~KY~ 320 (417)
T d3bona1 241 FKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYL 320 (417)
T ss_dssp EECCSCHHHHHTTCEEEHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHCCEESSSSSCHHHHHHHHHHHHT
T ss_pred EECCCCCHHHHCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 32121122343246645777765169781105846788899999999999999987525678885236999999988744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 l~~d~~g~~~vn~~kF~~~yk~L~~~fTe~~~a~~fkvk~Rk~Y~~~~~~~~~~nlldd~iYtI~eGFNi~~~nl~~~~~ 400 (417)
T d3bona1 321 LSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFN 400 (417)
T ss_dssp CEECTTCCEECCHHHHHHHHHHHHHTSCHHHHHHHHTCCCCSCSSSCCCEEEECCCSSTTTCBTTTBTSCTTSTTSSTTG
T ss_pred CCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 65278885895389999999999711588888766501434420000244100144676531314552146665345557
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
.
T Consensus 401 GQN~~iN~~~~~~~~~~ 417 (417)
T d3bona1 401 GQNTEINNMNFTKLKNF 417 (417)
T ss_dssp GGBTTTTGGGCEEEEEC
T ss_pred CCCHHHCHHHHHHHCCC
T ss_conf 76522153442442069
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31493.46 Aligned_cols=1 Identities=100% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~ 80 (417)
T d1q7ea_ 1 LSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK 80 (417)
T ss_dssp CCCTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 99898999899847704899999999983993999898999871210488898985188897089984999769398899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sisgfG~~GP~~~~~~~D~~~qA~sG~~~~~g~~~~~P 160 (417)
T d1q7ea_ 81 EVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP 160 (417)
T ss_dssp HHHHHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEESSCTTSTTTTSCCCHHHHHHHTTHHHHSSCTTSCC
T ss_pred HHHHHHHHCCCCCEECCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999984086407546887175528889999866878788763222454344565334543333223201126656798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~D~~~g~~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (417)
T d1q7ea_ 161 LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP 240 (417)
T ss_dssp CCCSSCTTTHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHTHHHHHHHHHHHHHSCCTTSTTTTTSCCCSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 52224431679999999999999999985499739997789999986689998554320002222244344655677788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 r~~~~~~~~~p~~~~~~~~~~t~dg~i~~~~~~~~~w~~l~~~lg~~dl~~d~~~~~~~~r~~~~~~l~~~i~~~~~~~t 320 (417)
T d1q7ea_ 241 RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTID 320 (417)
T ss_dssp CCTTCCSSSSCEEEEECTTTTTCTTCEEEEECCGGGHHHHHHHTTCGGGGTCTTTSSHHHHGGGHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66656888886430133015517983999732312556899985885101332000000122119999877765211333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~e~~~~l~~~~ip~~pV~~~~e~~~dpq~~~r~~~~~~~~p~~g~~~~~g~p~~~s~~~~~~~~aP~lGeht~eIL~el 400 (417)
T d1q7ea_ 321 KHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQEL 400 (417)
T ss_dssp HHHHHHHHGGGTCCEEECCCHHHHHHCHHHHHTTSEEEEEETTTEEEEEECCSSCCSSCCCCCCCCCCTTTTHHHHHHHT
T ss_pred CCHHEEEEECCCEEEEECCCHHHHHHCHHHHHCCCEEEEECCCCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 10110123237702674488999976989897299999666998823644788604899999999999984599999986
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
=
T Consensus 401 G~s~~~I~~L~~~gvI~ 417 (417)
T d1q7ea_ 401 GYSDDEIAAMKQNHAIE 417 (417)
T ss_dssp TCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCCC
T ss_conf 99999999999781939
|
| >d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Microviridae-like VP domain: Microvirus capsid proteins species: Bacteriophage G4 [TaxId: 10843]
Probab=100.00 E-value=0 Score=31491.04 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~DlsH~~~~t~~~G~L~PI~~~eVLPGDtf~l~~~~f~Rlat~~~pvmdn~~~d~ffFfVP~RlvW~dnWekF~g~~~ 80 (417)
T d1gff1_ 1 VPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYGQQWINFMKDGV 80 (417)
T ss_dssp CEECCCEEEEEEECSSBCEEEEEEEECTTCEEEEEEEEEEEECCBSSSCCSCEEEEEEEEEEESHHHHTHHHHHHHHHGG
T ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCEEEECHHHHHCCCCCCCHHHHHEEEEEEEEECCEEEEEHHHHHHHHCCCC
T ss_conf 98554500110455650678775142589755644123201266532211210667899852411354125899756878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 np~~vP~vt~~~g~~~~dYlG~P~~~~~~~~~l~~rAYn~I~NewfRd~nl~ds~~v~~~dgpdd~a~y~lr~~~~~dyf 160 (417)
T d1gff1_ 81 NASPLPPVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPSNMPSEDYKWGVRVANLKSIW 160 (417)
T ss_dssp GCCCCCCEECCSSTTSSGGGSSCCCTTSEECHHHHHHHHHHHHHHTSCTTSCCCCCSSGGGSCTTTTTTCCBCBCCCCST
T ss_pred CCCCCCCEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 98878706458874387618888888732102478999999997713734355335147778875102222201101310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Ts~LP~~~~~s~~~g~~~~s~d~~gL~~a~a~ti~~lr~a~flQr~~Ei~argG~r~~~~v~~~d~rlqr~eylggg~~~ 240 (417)
T d1gff1_ 161 TAPLPPDTRTSENMTTGTSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV 240 (417)
T ss_dssp TSCCCTTCCSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHTTTCCCCTTTTTCCEEEEEEEEEECCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 13589998877556888664470435666667899999999999999999734983554576827765214765366422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~Tdqt~lg~~sg~g~~~~~~~v~~~~~~EHG~I~~L~~vr~~~t~~q~~~~~~~~~d~~~p~fa~Dp~l~geqP~~n~e 320 (417)
T d1gff1_ 241 DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENLTYTDIACDPALMANLPPREVS 320 (417)
T ss_dssp ECCSTTTTTCEEEECEEEEEEEEEEEECCSSEEEEEEEEEECCCCBTTBCCHHHHSSSCCHHHHSCCHHHHTTSCCEEEE
T ss_pred CCCCCCCHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCCCCC
T ss_conf 46653112331032487215633553245541899999853786101045541562001452330680110347742323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 i~~~~~s~d~~v~Gy~~r~~~YR~~p~~V~g~f~sLd~W~~~~~~psl~~~~~v~v~~~~~D~~f~s~~~~q~~~~~~fn 400 (417)
T d1gff1_ 321 LKEFFHSSPDSAKFKIAEGQWYRTQPDRVAFPYNALDGFPFYSALPSTDLKDRVLVNTNNYDEIFQSMQLAHWNMQTKFN 400 (417)
T ss_dssp TTTTBSSCCTTCEEEECTTGGGSCCCCCCCTTTTTCTTCCSBCSCCCSSTGGGTBCCGGGGGGGBSSCSSCSEEEEEEEE
T ss_pred HHHHCCCCCCCEEECCHHHHHHHCCCHHCCCCCCCCCCCEEECCCCCCCHHHCEEECCCCCCHHHHCCCHHHHHEEEEEE
T ss_conf 54404778864014012045552472010200004564132114889984460152687503666137505500114775
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
-
T Consensus 401 ~~v~R~mPt~~~~i~~~ 417 (417)
T d1gff1_ 401 INVYRHMPTTRDSIMTS 417 (417)
T ss_dssp EEEECCCCCHHHHSCCC
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 67860489854332469
|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=0 Score=31490.65 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~n~~ti~d~~d~~gK~VllRvD~NvPi~~g~i~dd~RI~~~~pTI~~l~~~~a~kvil~sH~GRP~g~~~~~~SL~ 80 (417)
T d1ltka_ 1 HHHLGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLK 80 (417)
T ss_dssp CCCSSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
T ss_conf 97444675023111258998999943477654993896889999999999999879985999847999999889875879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~IlLLENvRF~~eE~~~~~~~~~~~~~~~~~n~~~f~k~LA~laD 160 (417)
T d1ltka_ 81 PVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLAD 160 (417)
T ss_dssp HHHHHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999868465556553202245430247865378740021021012356432221000122307999999860385
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 vyVNDAF~~aHR~haS~vgi~~~~~~aG~L~ekEl~~L~~~l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~ 240 (417)
T d1ltka_ 161 VFINDAFGTAHRAHSSMVGVKLNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGG 240 (417)
T ss_dssp EEEEECTTSCSSCCHHHHCCCCSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESS
T ss_pred EEEECCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEHH
T ss_conf 89963531231047632312120112368999999999999854566736998567744269999878865111663036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~ 320 (417)
T d1ltka_ 241 MAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPK 320 (417)
T ss_dssp HHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf 67889886148766753103567899999999998639961002322430234567643312333567753444411511
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~~~t~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~ 400 (417)
T d1ltka_ 321 SIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGAS 400 (417)
T ss_dssp HHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHH
T ss_conf 12679998646877999898344446624278999999999883179979995789999999639746880897578999
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
=
T Consensus 401 Le~L~G~~LPgieaL~~ 417 (417)
T d1ltka_ 401 LELLEGKELPGVLALSN 417 (417)
T ss_dssp HHHHTTCCCHHHHTSCC
T ss_pred HHHHCCCCCCCEECCCC
T ss_conf 99987999762001249
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31490.24 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~v~VmlPLd~v~~~~~~~~~~~~L~~LK~aGV~gV~vdVwWGivE~~~Pg~Ydws~yd~l~~mv~~~GL 80 (417)
T d1vema2 1 AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGM 80 (417)
T ss_dssp CGGGCCCCTTCEEEEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98887788995389986622245667889999999999983997899933424310589983570899999999998698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Ki~vvmsfH~cGgnvgd~~ti~lP~Wv~e~~~~pDi~~tDr~G~r~~E~LS~~~d~t~~~~y~~~~~sF~~~f~~~~~~I 160 (417)
T d1vema2 81 KMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVI 160 (417)
T ss_dssp EEEEEEECSCBSSSTTCCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHHHHTGGGGGGB
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 28999874235787788615688888870554888167768898883703766698701004167887999987740047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~ei~vglGp~GELRYPsyp~~~gW~~pg~GefqCYd~~~~~~fr~wl~~ky~al~aln~aWG~~~~~~~~~~~p~~~~ff 240 (417)
T d1vema2 161 AKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF 240 (417)
T ss_dssp CCEEECCSGGGBSSCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTCCCSSGGGCCSCSCHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99986057420003788810015657998866578999999999999860665632235228999754576778888766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~g~~s~YG~fFL~WYs~~L~~Hgdrvl~~A~~~F~~~~~v~l~~Kv~giHWwy~~~t~shaaElTAGydgY~~i~~~~ 320 (417)
T d1vema2 241 LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAF 320 (417)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTTCSSSTTTTHHHHTCSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 67983533335589999999999999999999985189877279999465033689999874154405855779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~r~~~~l~ftc~em~d~~~~~~~s~Pe~Lv~qv~~aa~~~gv~~~gENAl~~~d~~~~~~i~~~~~~~~~~~fTylRm~~ 400 (417)
T d1vema2 321 KSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQD 400 (417)
T ss_dssp HHHTCEEEESCCSCCCCCCTTTCCCHHHHHHHHHHHHHHHTCCEEEECSSCCCSHHHHHHHHHHHHHTTCSEEEESCHHH
T ss_pred HHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 86697598761244568899655797999999999999829936510053014867999999971127876157975656
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
|
T Consensus 401 ~l~~~~n~~~F~~fv~~ 417 (417)
T d1vema2 401 VMYNNSLMGKFKDLLGV 417 (417)
T ss_dssp HHTCHHHHHHHHHHTSC
T ss_pred HHCCCCCHHHHHHHHCC
T ss_conf 55796428889887439
|
| >d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Amine oxidase catalytic domain family: Amine oxidase catalytic domain domain: Copper amine oxidase, domain 3 species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31494.04 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 P~r~~~kp~~i~QP~G~~f~v~~g~~V~w~~W~f~~~f~~r~Gl~l~dv~~~~g~r~r~i~Y~lsl~E~~vpY~~~~p~~ 80 (417)
T d1w6ga1 1 PLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIR 80 (417)
T ss_dssp SCCCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEBCCCCTTT
T ss_pred CCCCCCCCCEEECCCCCCEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCHH
T ss_conf 98888998305689999879778988997687899970787661999999818984766899801236798788998356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~D~ge~G~G~~a~~L~~G~DCp~~a~y~D~~~~~~~g~p~~~~naiCifE~d~G~~~rh~~~~~~~~~~~r~~~L 160 (417)
T d1w6ga1 81 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRM 160 (417)
T ss_dssp TTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred HHCEEEECCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf 21016733452633412346558999866768237872688998861653788624788227888704781368750069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Vvr~i~TvgNYdYi~~~~F~~dGsIe~~v~aTG~l~~~~~~~~~~~~g~~v~~~~~g~~H~H~f~~RlD~dIdG~~Nsv~ 240 (417)
T d1w6ga1 161 VISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVE 240 (417)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEE
T ss_pred EEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf 99999973202089999994696799999988999871347888986437646756555321357774355479976699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~E~~a~~~~~~~~~r~~~vvN~~k~N~~G~~~gYkl~p~~~~~~l~~~~s~~~ 320 (417)
T d1w6ga1 241 EEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 320 (417)
T ss_dssp EEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHH
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
T ss_conf 99617842797665454789999988762563220266686489998799858899944599855887764579876011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~ra~fa~~~lwVT~y~d~E~~aag~y~nq~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~gf~L 400 (417)
T d1w6ga1 321 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKL 400 (417)
T ss_dssp HHTGGGGSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEE
T ss_pred HCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEE
T ss_conf 02322106378856877662677777447789998467510899423786799995784248985447997620577999
Q ss_pred ----------------E
Q ss_conf ----------------9
Q 001846 864 ----------------V 864 (1006)
Q Consensus 864 ----------------V 864 (1006)
-
T Consensus 401 ~P~nFF~~nPald~p~s 417 (417)
T d1w6ga1 401 RPEGFFDRSPVLDVPAN 417 (417)
T ss_dssp EESSCSSSCTTTTCCCC
T ss_pred ECCCCCCCCCCCCCCCC
T ss_conf 87877899986678999
|
| >d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=31425.15 Aligned_cols=1 Identities=0% Similarity=-2.320 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~p~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~~~~~~~~p~~~~~~~e~ll~eA~~Fi~q~y~e~~~~~~~ 80 (416)
T d1q2oa_ 1 GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQ 80 (416)
T ss_dssp CCSSCEEEBTTTCCEEECCGGGGCCBCCSCCSSCBCTTCSCC-----------CCHHHHHHHHHHHHHHHHHHTTCTTSH
T ss_pred CCCCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99745655404687563324442678899876733560025644466888999998999999999999999862756778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~R~~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGR~~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~I 160 (416)
T d1q2oa_ 81 AHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNL 160 (416)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999997464620899999887899870455222300216572665678999899999999999997079987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 r~~ITVFp~~~~g~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLViq~~g~~p~~fe 240 (416)
T d1q2oa_ 161 RSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFV 240 (416)
T ss_dssp CCEEEECCCCBTTBCCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHHTTCCCCCSSSCBCCEEEECTTSCCEEEC
T ss_pred CEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 63389737988999986675488786626578998764684216999999976888999987710289997899972673
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 iP~elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRnl~D~~RYN~L~~VA~~mG 320 (416)
T d1q2oa_ 241 LPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRDLCDPHRYNILEDVAVCMD 320 (416)
T ss_dssp CCGGGSCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHTT
T ss_pred CCHHHEEEECCCCCCCCHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 88778357346798983066638857605211255000077844245645330022355430455566666899999848
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 LDT~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~S~s~TpvfH~~~ 400 (416)
T d1q2oa_ 321 LDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEM 400 (416)
T ss_dssp CCTTCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCBCCHHHHSCSSSGGGSGGGGBCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 78889740467789999999999899877964704068899999999999983899998852777888754541676665
Q ss_pred ---------------E
Q ss_conf ---------------9
Q 001846 864 ---------------V 864 (1006)
Q Consensus 864 ---------------V 864 (1006)
-
T Consensus 401 ~n~~l~P~f~yq~~~w 416 (416)
T d1q2oa_ 401 VNYILSPAFRYQPDPW 416 (416)
T ss_dssp BBCBCSSEEECCCCCC
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 5034588865589999
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31420.24 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 l~~~~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r 80 (416)
T d1dfoa_ 1 LKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDR 80 (416)
T ss_dssp CCTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98658845519999999999999987690586476657899999855741475658899975447773099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~ 160 (416)
T d1dfoa_ 81 AKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQ 160 (416)
T ss_dssp HHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99983998205601557557999999863898866421465433335555544467237999646687667447899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~ 240 (416)
T d1dfoa_ 161 AKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 240 (416)
T ss_dssp HHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEE
T ss_pred HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCEECCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEE
T ss_conf 99836564873432255655879999998751715872212000003244347860000046521001046878638984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlv 320 (416)
T d1dfoa_ 241 KGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLV 320 (416)
T ss_dssp SSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 23117689998766086534685177898988779987097889999999999999999998389443369988753688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 dl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~~~~~~~~ 400 (416)
T d1dfoa_ 321 DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIER 400 (416)
T ss_dssp ECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 73045898999999999729688678588999988889821767789984899879999999999999972786799999
Q ss_pred ---------------E
Q ss_conf ---------------9
Q 001846 864 ---------------V 864 (1006)
Q Consensus 864 ---------------V 864 (1006)
-
T Consensus 401 ir~~V~~l~~~fPly~ 416 (416)
T d1dfoa_ 401 IKGKVLDICARYPVYA 416 (416)
T ss_dssp HHHHHHHHHHHSCSBC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999998089989
|
| >d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: L-rhamnose isomerase domain: L-rhamnose isomerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31417.90 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 s~i~~~ye~a~e~ya~~GID~e~al~~L~~~~Is~h~WqGddv~gFe~~~g~ltGGi~~tGnyPG~aR~~~E~~~D~~~~ 80 (416)
T d1d8wa_ 1 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA 80 (416)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCCEEEEGGGGTTTCCCCC--------------CSCCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 91679999999999983988999999985484443036678765534677767776021278899889989999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~Lipg~~~vnLH~~y~~~~~~vdrd~i~p~hf~~w~~wAk~~glglDfNpt~Fshp~~~~g~sLshpd~~iR~~wI~H~ 160 (416)
T d1d8wa_ 81 MRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHC 160 (416)
T ss_dssp HHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTTCEEEEECCCSSSGGGTTSCSTTCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98568998400033320258866412258574899999999749774757655578442257762588889999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~c~~I~~~~G~~~g~~~v~niWi~DG~k~~~~d~~~~R~Rl~eSLdeI~a~~~d~~~~ld~vE~K~Fg~g~esy~vgs~ 240 (416)
T d1d8wa_ 161 KASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSN 240 (416)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHHHHHHHTCSCCCTTTEEEEEECCSCBTTBCSEESSCH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEECCCH
T ss_conf 99999999986300776204776577676888683159999999999998715876650454230125565035763738
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 df~~~yal~~~a~~llD~GH~hPtenI~dkisalll~~~~~~lH~sr~~rwDsDhvvi~~del~~I~~ElVr~~~ld~v~ 320 (416)
T d1d8wa_ 241 EFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVH 320 (416)
T ss_dssp HHHHHHHHHHTCEEEEETTSSCTTCCHHHHHHHHTTTSSCEEEEECBCSSSSCCBCCCSSHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 88998763489679986798787665999999999727542576388856677612036489999999999645544422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~LD~fdasinrI~a~v~g~rn~qka~l~ALL~p~~~L~~~q~~gD~t~rla~~Ee~K~~P~~avW~~~c~r~~vp~~~~ 400 (416)
T d1d8wa_ 321 IGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSE 400 (416)
T ss_dssp EEECCCCCSSCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTTCHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCCSTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 30023422466199999999999999999976899999999986799999999999851981889999999739998768
Q ss_pred ---------------E
Q ss_conf ---------------9
Q 001846 864 ---------------V 864 (1006)
Q Consensus 864 ---------------V 864 (1006)
=
T Consensus 401 ~~~~v~~Ye~~v~~kR 416 (416)
T d1d8wa_ 401 WLESVRAYEKEILSRR 416 (416)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999885349
|
| >d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exosome complex exonuclease RRP44 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=100.00 E-value=0 Score=31414.26 Aligned_cols=1 Identities=0% Similarity=-0.062 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva 80 (416)
T d2vnud4 1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT 80 (416)
T ss_dssp CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHH
T ss_conf 98789964432368643764453122115752323771177898799769999546565899995899599999983578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY 160 (416)
T d2vnud4 81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 160 (416)
T ss_dssp HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred HHHCCCCHHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEHHHHCCCCCCCH
T ss_conf 86299998999999848037589971144788886545205698202467765540210144420332012033322321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~ev~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~s~~lVeE~Mi~A 240 (416)
T d2vnud4 161 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLA 240 (416)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 66788751354321000678999999999999998568754578742799423335565431122242014078776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 N~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 320 (416)
T d2vnud4 241 NISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMM 320 (416)
T ss_dssp HHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 08999999984788876400079997999999999997012676865225578999987475672699999999887788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~a~~~~~~~~s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~~~~e~l~~i~~~~~~~e~~a~~a 400 (416)
T d2vnud4 321 AAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFA 400 (416)
T ss_dssp CCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87763015579976273765722015168677637899999999999737999977443999999999999999999999
Q ss_pred ---------------E
Q ss_conf ---------------9
Q 001846 864 ---------------V 864 (1006)
Q Consensus 864 ---------------V 864 (1006)
=
T Consensus 401 er~~~~~~~~~~lk~~ 416 (416)
T d2vnud4 401 GRASIEYYVGQVMRNN 416 (416)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999997578
|
| >d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: Isocitrate dehydrogenase, ICDH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31413.64 Aligned_cols=1 Identities=0% Similarity=1.466 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~IavipGDGIGPEV~~ealkVL~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~ 80 (416)
T d1pb1a_ 1 MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQ 80 (416)
T ss_dssp CCCCCCCCSSCBCCEEETTEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCSHHHHHHHCT
T ss_pred CCCCCCCCCCCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
T ss_conf 99752279998679977998818999889998988624999999999999999874268985589998235799998499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~l~lR~~ldlyanvRP~r~~pg~~spl~~~~~iD~vIvREnteG~Y 160 (416)
T d1pb1a_ 81 DVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY 160 (416)
T ss_dssp TCSSCHHHHHHHHHHSEEEECCCCCCSSSCCCCHHHHHHHHTTCCEEEEEEECCTTCCCSSSCGGGCEEEEEEECSSGGG
T ss_pred CCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 77799999999985498952886699988876667889987486474132002678886434556446599861134422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~r~AF~~A~~~~r~~vt~v~Kanvl~~~~gl 240 (416)
T d1pb1a_ 161 AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240 (416)
T ss_dssp GCCEECTTCHHHHHHHHHHHHTSCCCCCSCCSSCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 45033456520688998766530530113653036765402122228999999999996699968999789765401678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 f~~~~~e~a~e~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl 320 (416)
T d1pb1a_ 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGI 320 (416)
T ss_dssp HHHHHHHHHHHHHCCEECTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 99999999987631223344431101046676334289999999999985210467789613578777777888862376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 Gl~pSanig~~~a~fEp~HGSAPdiaGk~iANP~a~Ils~amML~~lg~~~~A~~i~~Av~~~l~~g~~T~Dl~~~~~~g 400 (416)
T d1pb1a_ 321 GIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGA 400 (416)
T ss_dssp TTCCCEEECSSCEEEECCSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTEECHHHHTTSSSC
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 65445466877248877888615547999759299999999999987997899999999999997598124300046899
Q ss_pred ---------------E
Q ss_conf ---------------9
Q 001846 864 ---------------V 864 (1006)
Q Consensus 864 ---------------V 864 (1006)
+
T Consensus 401 g~~~T~e~~daI~~~l 416 (416)
T d1pb1a_ 401 KLLKCSEFGDAIIENM 416 (416)
T ss_dssp EECCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7727999999999659
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31411.57 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 k~~~~~v~~~~~~w~~pRw~~ikR~Yta~dV~~lRgs~~~~~~~a~~~A~kL~~lL~~~~~~~~v~~lGa~d~~~A~~~~ 80 (416)
T d1igwa_ 1 KTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQA 80 (416)
T ss_dssp CCHHHHHHHHHHHTTSGGGTTCCCSSCHHHHHHTTCSCCCCCHHHHHHHHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 96799999999986696515689998999999966985876837899999999998604445706547757799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~~~~d~~lPIIADaDtG 160 (416)
T d1igwa_ 81 KAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAG 160 (416)
T ss_dssp HHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCTTCCCCCCCEEEECTTC
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 80998899646100165555678877765462889999999999988889999875200235444444310157742245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 fG~~~nv~r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li 240 (416)
T d1igwa_ 161 FGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLI 240 (416)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf 67658999999999967871897226766430100148974678999999999999877427998279986230555444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~gADli~~Et~~~~~e~a~~fa~~v~~~~p~~~l~yn~SPs 320 (416)
T d1igwa_ 241 TSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPS 320 (416)
T ss_dssp SCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEECC--
T ss_pred HCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCC
T ss_conf 20131115672057647343522247859999999984322667753168998999999998607876567623478887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 fnw~~~~~~~~~~~~~~eL~~lGy~~~~~~la~~ha~~~a~~~l~~~~~~~~gm~ayv~~~Q~~E~~~~~~g~~~~~hQ~ 400 (416)
T d1igwa_ 321 FNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQ 400 (416)
T ss_dssp --------------HHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTHHHHHHHHTTTCCTTSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 67201235567999999999659888996768999999999999999863498899999875898887744863020886
Q ss_pred ---------------E
Q ss_conf ---------------9
Q 001846 864 ---------------V 864 (1006)
Q Consensus 864 ---------------V 864 (1006)
=
T Consensus 401 ~~G~~y~D~~~~~~~g 416 (416)
T d1igwa_ 401 EVGTGYFDKVTTIIQG 416 (416)
T ss_dssp HTTHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHCC
T ss_conf 7542489999987169
|
| >d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Densovirinae-like VP domain: Densovirus capsid protein species: Galleria mellonella densovirus [TaxId: 37138]
Probab=100.00 E-value=0 Score=31341.07 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~IpRPi~~~~~~~~tyrK~HkFltfGlA~kvi~~~~t~~t~~~~~lTTsLaeiPw~~p~~YMnpsEF~lLP~Gs~v~e 80 (415)
T d1dnva_ 1 VYIIPRPFSNFGKKLSTYTKSHKFMIFGLANNVIGPTGTGTTAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSRVVE 80 (415)
T ss_dssp CCCCCCCCCCCCCEECCEEEEEEEEEECCCSCCCEECSSTTTCSBEEEEEEEEECCTTBGGGTCCHHHHHTCCTTCBCCC
T ss_pred CEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCCEECCHHHHHHCCCCCEEEE
T ss_conf 93746676778886799965446776200121001456662023232210151160345525248878710689866889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~vkvv~rn~RiAFeTnSS~T~lATLNQnk~~~~A~GLN~~~~G~nr~~T~f~s~epMiPt~t~~~~y~~v~~~~~y~~~ 160 (415)
T d1dnva_ 81 CNVKVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGINRAFTAFQSDQPMIPTATTAPKYEPVTGDTGYRGM 160 (415)
T ss_dssp EEEEEEEEEEEECCCCSCTTSCCCCSCCCCEEEEESTHHHHTTCBCCCCCCCCSSSCCSCCCCCCCCSSEECSSSCEECH
T ss_pred EEEEEEEECCEEEEEECCCCCCCEECCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77899984670577755763101001022330110100302454213654556888745667786522355654689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 v~~~YG~~~~n~~~~~~~~~~P~hq~g~~~~L~nYfc~~~~~~~~tgGwpcl~~hi~e~da~~~~g~~vl~~~YkPk~g~ 240 (415)
T d1dnva_ 161 IADYYGADSTNDTAFGNAGNYPHHQVSSFTFLQNYYCMYQQTNQGTGGWPCLAEHLQQFDSKTVNNQCLIDVTYKPKMGL 240 (415)
T ss_dssp HHHHHCCCSSCTTSSSSSSSCCGGGGCCEEECCCEEEECCBSSSSCCCCCCGGGGSEECCTTTTTTSBCCCCEECCSSCB
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf 99974766678633457777875672772110002577652046889836789998750256678857888852776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ik~P~~~~i~g~p~~~g~~sv~~n~~~~~~a~~~~~~~at~n~s~s~~nl~~~fp~~~~~iyt~IEKsQ~~~~G~~g~~~ 320 (415)
T d1dnva_ 241 IKSPLNYKIIGQPTVKGTISVGDNLVNMRGAVVTNPPEATQNVAESTHNLTRNFPADLFNIYSDIEKSQVLHKGPWGHEN 320 (415)
T ss_dssp CSCCCCBCCCCCTTBTTBBSCCCCCCCSCCSCEECCCCCBCSSSCBCCCCCEECCCCCCCCCSSCTTSSBSCCTTTCCCT
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHEECCCCCCCC
T ss_conf 46743354336655332120010044225765478255443321200204315884103023422133402126766668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 p~iQPSlHIGv~pVPaLTTa~l~~~~~~~~n~TDt~~ywdV~~~~~V~~~~Pt~~P~~~~~nv~~~~~~y~~nl~~~~~t 400 (415)
T d1dnva_ 321 PQIQPSVHIGIQAVPALTTGALLINSSPLNSWTDSMGYIDVMSSCTVMEAQPTHFPFSTEANTNPGNTIYRINLTPNSLT 400 (415)
T ss_dssp TCCCCCCCCCCEEEEECCBCCCCSSCCSCCCBCCEEEEEEEEEEECCEECCCCCSTTCCSCCBCTTTCCCCCCCSSCSSC
T ss_pred CCCCCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 75376246332204400113223378776762202589999988999855886544556678883303230446765556
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
-
T Consensus 401 s~~~GlY~~~~~~~~ 415 (415)
T d1dnva_ 401 SAFNGLYGNGATLGN 415 (415)
T ss_dssp SSSCCSSSCCSSCCC
T ss_pred CCCCCEEECCHHCCC
T ss_conf 521212641110379
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31338.75 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~e~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~ 80 (415)
T d2ieaa2 1 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 80 (415)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99853688854368999889999999999999999999982678998898254679999999999985148987688887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~ 160 (415)
T d2ieaa2 81 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 160 (415)
T ss_dssp EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79835750299999999839875035777753135789898888777888776798202157899999999987876530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~ 240 (415)
T d2ieaa2 161 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG 240 (415)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 23578842899954320023899999988887288808999967863356671014311488999998648626874031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ 320 (415)
T d2ieaa2 241 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK 320 (415)
T ss_dssp GGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 02444320102434334121033431100002441566665303421046787663131455665315740446899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ak~~~d~P~vI~a~TiKGkGlp~A~e~~n~~H~~kkl~~Ee~~~~r~rl~~pl~d~~~e~~pf~~p~~~s~e~~~l~err 400 (415)
T d2ieaa2 321 AQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQR 400 (415)
T ss_dssp HHHCCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98658996289973523368874334621012788899999999999839999813443179778888889999999999
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
-
T Consensus 401 ~~Lgg~lP~r~~~~~ 415 (415)
T d2ieaa2 401 QKLHGYLPSRQPNFT 415 (415)
T ss_dssp HTTTSCSSCCCSSCC
T ss_pred HHHCCCCCCCCCCCC
T ss_conf 984898876787889
|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31338.64 Aligned_cols=1 Identities=100% Similarity=0.769 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~~~l~~l~~W~Fd~f~l~~~~~~~~~~~L~~~~~~lf~~~gl~~~f~i~~~~l~~Fl~~v~~~Y~~nPYHN 80 (415)
T d1so2a_ 1 LDLILVEEYDSLIEKMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHN 80 (415)
T ss_dssp CCSHHHHHHHHHHHHHTSTTCCHHHHHHHHGGGGGGHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHTTSCSCSSSS
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96110688999997224689882020155212334489999999999778377529899999999999998579998827
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~HA~dV~q~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lE~~alliAA 160 (415)
T d1so2a_ 81 RIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAA 160 (415)
T ss_dssp HHHHHHHHHHHHHHTTSCEETCCCCCCC---------------CCCCCCCCTTCCCSSTTEECGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999999956554422111222233221111222332100122222333322201565408999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~HDvdHpG~nN~Flv~t~~pLA~lYnd~SVLEnhH~a~a~~lll~~~~~nil~~l~~~e~~~~r~lii~~ILATDm~~H 240 (415)
T d1so2a_ 161 AMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKH 240 (415)
T ss_dssp HHTTTTCCSCCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTCGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 97226999966889987188789985898888999999999999648542143069999999999999999970464567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 f~~l~~f~~~~~~~~~~~~~~~~~~~r~lv~~~lik~ADIs~~~rp~~v~~~W~~~l~~EF~~QGd~E~~lglp~sp~~D 320 (415)
T d1so2a_ 241 FDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPFMD 320 (415)
T ss_dssp HHHHHHHHHHHTSSSCCCCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998740047767787888999999999998624744582889999999999999987799866999985668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 R~~~~~~k~QigFi~~iv~PLf~~l~~a~~~~~~~~~~~~~n~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (415)
T d1so2a_ 321 RSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIF 400 (415)
T ss_dssp TTSCCHHHHHHHHHHHTHHHHHHHHHHTTCSCCEECC-------------------------------------CCSSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 66564157899999998999999999983255999999998898778757664134400015554455776056677776
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
=
T Consensus 401 ~~~~~~l~en~~~w~ 415 (415)
T d1so2a_ 401 CQLMHHLTENHKIWK 415 (415)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 689999986255129
|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=31338.16 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~ktl~d~~~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTi~~ll~~~akvvl~SH~GRPkg~~~~~~~~~~~~~~~~ 80 (415)
T d16pka_ 1 EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP 80 (415)
T ss_dssp CBCBGGGSCCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99741013878998999934675555995897388999999999999788979999058998987555322222223312
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~sL~~~a~~L~~~l~~~V~f~~~~~~~~~~i~~l~~g~i~LLEN~Rf~~eE~~~~~~~~~~fak~LA~laDiyVN 160 (415)
T d16pka_ 81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS 160 (415)
T ss_dssp TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 36833473889999998758674234431024456650577416874200024532322122138999998722868994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 DAFg~sHR~haS~~Gi~~~lps~~gg~L~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~a 240 (415)
T d16pka_ 161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240 (415)
T ss_dssp ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred CCCCHHHCCCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHH
T ss_conf 56202204675122200014224678999999999999970977551899853653437999998885365565322188
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ntfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d16pka_ 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEK 320 (415)
T ss_dssp HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999809805544304443212666522321151678511203303101334443112222234543777787776667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~t~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~ 400 (415)
T d16pka_ 321 YVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLEL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHH
T ss_pred HHHHHHHHCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHH
T ss_conf 76766513569996653213155151799999999998413479989987789999999719735870798778999999
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
=
T Consensus 401 L~G~~LPgi~aL~~k 415 (415)
T d16pka_ 401 LEGKTLPGVTVLDDK 415 (415)
T ss_dssp HTTCCCHHHHTSCBC
T ss_pred HCCCCCCHHHHHHCC
T ss_conf 879996257785069
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31337.15 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~kltl~d~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~~ak~vIL~SH~GRP~g~~~~~~Sl~~va 80 (415)
T d1qpga_ 1 SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA 80 (415)
T ss_dssp CTTSBCBGGGCCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred CCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 98666850322757998999932467643997896789999999999999879988999624899999879776869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~~~~~~~~~~~~~~~n~~~fak~La~laDiyVN 160 (415)
T d1qpga_ 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN 160 (415)
T ss_dssp HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99985319846984577776311012334467579942111143310246543011100100269999987547848996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 DAFg~aHR~haS~~g~~~~~s~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mant 240 (415)
T d1qpga_ 161 DAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT 240 (415)
T ss_dssp CCGGGTTSCCHHHHCCCCSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECHHHHH
T ss_conf 55011100565423455785633288999999999996499998599995476442899998787535557751103577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 flk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d1qpga_ 241 FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKL 320 (415)
T ss_dssp HHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 88760377666531122211023689999876598675512278730245555531230013558765123466046789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L 400 (415)
T d1qpga_ 321 FAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHH
T ss_conf 99875368679997774152465240689999999997215798299957899999997598568806967789999998
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
=
T Consensus 401 ~G~~LPgi~aL~~~k 415 (415)
T d1qpga_ 401 EGKELPGVAFLSEKK 415 (415)
T ss_dssp TSCCCHHHHTSCBCC
T ss_pred CCCCCCHHHHHHHCC
T ss_conf 799970798885288
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=31334.66 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~iP~k~~~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~~~~V~~lDf~SLYPSii~~~Ni~ 80 (415)
T d1s5ja2 1 EISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFNITVLDFASLYPSIIRTWNLS 80 (415)
T ss_dssp CHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEEEEEEEETTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHCCC
T ss_conf 96489999999999977985789742245453201110034577387387079987657647878345339999996889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~R~~~~~~~~k~~~~~~~~~~~~d~~Q~A~Ki~~NS~ 160 (415)
T d1s5ja2 81 YETVDIQQCKKPYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINAT 160 (415)
T ss_dssp TTTBSCSCCSSCCEECCSSSCCCEEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30237534578765445799745786378887427899999999987420021123442268888788999999877777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 YG~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~~~~~g~~viygDTDSv~v~~~~~~~~e~~~~~i~~~~~~~le~e~~ 240 (415)
T d1s5ja2 161 YGVFGAETFPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNSLENIIKWVKTTFNLDLEVDKT 240 (415)
T ss_dssp HHHHHSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESCCHHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 77775466442328999899999999999888876605962466423314896288753999999987332212554425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~KKrY~g~~~dgkl~~kGie~vRrd~~~~~k~~~~~vl~~il~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~ 320 (415)
T d1s5ja2 241 YKFVAFSGLKKNYFGVYQDGKVDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKG 320 (415)
T ss_dssp EEEEEEC----CEEEECSSSCCCEESCCC--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTTC---
T ss_pred EEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 51664431033203220255400110000356537889999999999997169878888878899999999999986079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 i~~~dl~~~k~l~k~~~~Y~~~~p~hv~~A~~l~~~g~~~~~GdrI~YViv~~~~~~~p~~~~~~~~iD~~yYi~~l~~p 400 (415)
T d1s5ja2 321 YNLDELAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPRDIIYYVKVRSKDGVKPVQLAKVTEIDAEKYLEALRST 400 (415)
T ss_dssp -------------------------------------------------------------------CCSSTTHHHHHTT
T ss_pred CCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 78688202320146734311799389999999985599999989899999947999882220357998889999999999
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
+
T Consensus 401 l~~il~~~g~~~~el 415 (415)
T d1s5ja2 401 FEQILRAFGVSWDEI 415 (415)
T ss_dssp STTHHHHHSCCCCCC
T ss_pred HHHHHHHHCCCHHHC
T ss_conf 999998628994439
|
| >d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Uronate isomerase-like domain: Uncharacterized protein BH0493 species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=31332.78 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~s~~~ia~~L~~~i~~~PIID~H~HL~p~~~~~~~f~~~~~l~~~hyyk~r~mr~~gv~e~~itg~~~~~~~~~~~~~ 80 (415)
T d2qeec1 1 SINSREVLAEKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMSKREQADLIWEE 80 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHSCEEECSCSCCCGGGGGGSBCSHHHHHTSHHHHHHHHTTCCSCHHHHHHSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 97458999999999975898868888969778511677881888431799999998539998980789847889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~p~~~w~~~~l~~~~~l~~~~~~~~~~~i~~~~~~~~~e~~~r~ll~~~nVe~v~tTDdP~D~L~~H~~~~~~~~ 160 (415)
T d2qeec1 81 LFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERISWLEGKQP 160 (415)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHTCCHHHHHHHHHHHTTEEEEECCBCTTCHHHHHHHHTTCCC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 97428935899999888852567666767899999999762511179999998282035213797321899998604688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~v~ptfRpD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (415)
T d2qeec1 161 DSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIR 240 (415)
T ss_dssp CTTEECCEECHHHHHCHHHHHHHHHHTTCCCCSSCSHHHHHHHHHHHHHHHHHHCCSCEEEEECTTCCSSCSSHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75223002479886321007899999886145644576799999999999987325688885687788677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~~~~e~g~~mQlH~Ga~Rn~n~~~~~~g~~~g~~~~~~L~~ll~~~~~~k~il~~l~~~~~~e~a~lag~f~~v~l 320 (415)
T d2qeec1 241 DCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLREYPNNKFLVTMLSRENQHELVVLARKFSNLMI 320 (415)
T ss_dssp HTHHHHHHHHTCCEEEEECEETTSSGGGGGGGCEECCCCSHHHHHHHHHCTTSCEEEEECCGGGHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 99999987569817873376667773103478775767999999999848998879996896538999999853887067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 gg~WWf~d~~~gm~~~l~~~~e~~~~~fvg~~TDsRsf~~~~~rheyfRRil~~~L~~~v~d~v~~g~~~~~~~l~~~v~ 400 (415)
T d2qeec1 321 FGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVA 400 (415)
T ss_dssp BCCCGGGCSHHHHHHHHHHHHHHHTTCSBCCCCCCSBTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 77016636899999999999874400112254586644303378999999999999999999973689997999999999
Q ss_pred --------------E
Q ss_conf --------------9
Q 001846 864 --------------V 864 (1006)
Q Consensus 864 --------------V 864 (1006)
=
T Consensus 401 dI~y~Na~~yfg~~~ 415 (415)
T d2qeec1 401 DLFSRNFWRFVGRND 415 (415)
T ss_dssp HHHTHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999828899
|
| >d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: GckA/TtuD-like superfamily: GckA/TtuD-like family: GckA/TtuD-like domain: Putative glycerate kinase (hypothetical protein TM1585) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31267.92 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~lr~~~~~if~a~v~av~P~~~v~~~l~~~~~~~i~vvg~GKAa~~MA~~~~~~lg~~i~~g~vv~~~~~~~~~~~~i 80 (414)
T d2b8na1 1 PESLKKLAIEIVKKSIEAVFPDRAVKETLPKLNLDRVILVAVGKAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDF 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTSHHHHHHTTHHHHCCCSEEEEEESTTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE
T ss_conf 95689999999999998419789999847757999889999818999999999997276677059995898677888874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~~a~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL~dk~~~~~~Ll~sGA~I~eiN~VRk 160 (414)
T d2b8na1 81 EIYEAGHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRK 160 (414)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89978999998779999999999996489887689985088540011488999999999999999858998799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~lS~iKGG~La~~a~pa~v~sLilSDV~GDdl~~IaSGPTvpd~~t~~da~~il~~y~l~~p~~v~~~l~~~~~~~~~~v 240 (414)
T d2b8na1 161 HLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGIETSESVKRAILQETPKHLSNV 240 (414)
T ss_dssp TTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCCCCHHHHHHHTSCCCSCCSSE
T ss_pred HHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCHHEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98753662799971558568999805889981312048867899888999999998398777689986513578433454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~ii~~n~~al~aa~~~a~~~G~~~~~~~~~l~Gea~~va~~~a~~~~~~~~~~~~~~~p~~li~GGEtTV~v~g~G~G 320 (414)
T d2b8na1 241 EIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKGNGIG 320 (414)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHHCCSSCSSEEEEEEECCBCCCCSCCCC
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCC
T ss_conf 13895689999999999998749943995342457689999999999999985278888974899756568870689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 GRNqElaL~~a~~l~~~~~~~~ls~gTDG~DGptdaAGAivd~~t~~~~~~~gld~~~~L~~~DS~~f~~~~~~li~TGp 400 (414)
T d2b8na1 321 GRNQELALSAAIALEGIEGVILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP 400 (414)
T ss_dssp CHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSSSSCCEEEEETTHHHHHHHTTCCHHHHHHTTCHHHHHHHTTCEECCCC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCEECCCC
T ss_conf 64399999999983699996999975478878988775887662799999869999999987786999997699786199
Q ss_pred -------------E
Q ss_conf -------------9
Q 001846 864 -------------V 864 (1006)
Q Consensus 864 -------------V 864 (1006)
+
T Consensus 401 TgTNV~Dl~i~li~ 414 (414)
T d2b8na1 401 TGTNVNDLIIGLIV 414 (414)
T ss_dssp CSCCCCEEEEEEEC
T ss_pred CCCCHHHHEEEEEC
T ss_conf 99656350777969
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31265.39 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~i 80 (414)
T d1kbia1 1 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKV 80 (414)
T ss_dssp CTTCCHHHHHHHHHHHHTCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSC
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCC
T ss_conf 99885444556777631599812167999999999986888888887146665099999999997360665335787678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Dlst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~ 160 (414)
T d1kbia1 81 DISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNS 160 (414)
T ss_dssp BCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCS
T ss_pred CCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 88534898417888788745640456822367887764777641365322322346568899872177541011021124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~ 240 (414)
T d1kbia1 161 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE 240 (414)
T ss_dssp SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 58889999999987188510123344324651787872556654331444203554553277899985066899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~D 320 (414)
T d1kbia1 241 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD 320 (414)
T ss_dssp HHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 86157752775200006777788743886245223211111112200000024666664111488513885388676789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 VaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p~~~~~~ 400 (414)
T d1kbia1 321 VLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVPNDVLYN 400 (414)
T ss_dssp HHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCCCCHHHH
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHC
T ss_conf 99999758998877689999998446999999999999999999998589997891998834232243367899512210
Q ss_pred -------------E
Q ss_conf -------------9
Q 001846 864 -------------V 864 (1006)
Q Consensus 864 -------------V 864 (1006)
-
T Consensus 401 ~~~~~~~~~~~~~~ 414 (414)
T d1kbia1 401 EVYEGPTLTEFEDA 414 (414)
T ss_dssp HHCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 35678775333679
|
| >d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31261.47 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~iV~l~GDE~tr~i~~~i~~~~~~~~~di~~~~~d~G~e~~~~tg~~l~~daieaik~~~v~lkG~~~tP~~ 80 (414)
T d1t0la_ 1 MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDE 80 (414)
T ss_dssp CCCCEEEEEEEEEECCHHHHHHHHHHHHHTTTTTEEEEEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 98643368779956718999999999999707897752799826789998629967799999998669886678679873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~s~n~~lR~~~~~~~~~rp~~~~~~~~~~~~~~~d~vvvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (414)
T d1t0la_ 81 KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSD 160 (414)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf 33330012211010028889862765231126864899876787674367404554425436899779860689985046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~a~~~a~~~r~~v~~~~K~nv~~~t~glfr~~~~eva~~yp~~~~~ 240 (414)
T d1t0la_ 161 GTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240 (414)
T ss_dssp CSCCEEEEEEEECSCCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 65310000123467784268776205566788889999998469735875035614445288999999999876330134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~v~~~~~~~Da~~~~~~~~p~fdVivt~NLfGDILSDl~a~l~GglGl~pSanig~~~~~~~fe~~hg~aP~hGsapd 320 (414)
T d1t0la_ 241 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQ 320 (414)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
T ss_conf 32025666677789874148988728997674530566566562577431210115764334412355555543221001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 iAGk~iANP~A~ILS~amML~~lg~~d~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~lsT~ef~da 400 (414)
T d1t0la_ 321 KGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDK 400 (414)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHSCGGGCCGGGCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 37766539099999999999985265643689999999999999999679988231877666665556676589999999
Q ss_pred -------------E
Q ss_conf -------------9
Q 001846 864 -------------V 864 (1006)
Q Consensus 864 -------------V 864 (1006)
+
T Consensus 401 vi~~L~~~l~~~~~ 414 (414)
T d1t0la_ 401 LGENLKIKLAQAKL 414 (414)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999998865659
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31260.23 Aligned_cols=1 Identities=0% Similarity=-1.955 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ee~~~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~ 80 (414)
T d1o20a_ 1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKA 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 97999999999999998629999999999999999997699999999999865886041177787874249999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~p~n~p~~~~~~~~~~alaaGN~vvlKps~~tp~~~~~~~~l~ 160 (414)
T d1o20a_ 81 CETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAI 160 (414)
T ss_dssp HHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCHHEECCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf 99999865511233443344332101211221232012315717776514101001365201045600011002034677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~le~gGgn~~viv~~dAd~~~A~ 240 (414)
T d1o20a_ 161 REALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAV 240 (414)
T ss_dssp HHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCHHHHH
T ss_conf 76543212432124555543103444123334358699746079999876540344021046987871053335434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~gq~C~a~~r~~V~~~i~d~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~FgPvl~v~~~ 320 (414)
T d1o20a_ 241 PVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV 320 (414)
T ss_dssp HHHHHHHHSCTTSTTSEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEEEEEEEEEE
T ss_conf 68875441378643355522010889999999986899976986555465542110000002456770220037999994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~dEAI~~aN~~~yGLsa~I~T~d~~~a~~~~~~i~~G~V~IN~~~~~~~~~~~g~g~~~G~~~~~~~~~G~~gl~~~t 400 (414)
T d1o20a_ 321 KNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELT 400 (414)
T ss_dssp SSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGGGE
T ss_pred CCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHC
T ss_conf 99999999985589998179995899999999983981499991898688888879978156249989987456799849
Q ss_pred -------------E
Q ss_conf -------------9
Q 001846 864 -------------V 864 (1006)
Q Consensus 864 -------------V 864 (1006)
=
T Consensus 401 ~~K~vv~~~~~~~~ 414 (414)
T d1o20a_ 401 TYKFVVLGEYHVRE 414 (414)
T ss_dssp EEEEEEECSSCCCC
T ss_pred EEEEEEECCCCCCC
T ss_conf 57799987875378
|
| >d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Stabilizer of iron transporter SufD family: Stabilizer of iron transporter SufD domain: Stabilizer of iron transporter SufD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31186.98 Aligned_cols=1 Identities=0% Similarity=-2.088 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf 80 (413)
T d1vh4a_ 1 NALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVF 80 (413)
T ss_dssp CHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
T ss_conf 97899999998628846299999999999729889987281479879974357765677668002000234568548999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 vnG~~~~~ls~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~~~~~~ 160 (413)
T d1vh4a_ 81 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNT 160 (413)
T ss_dssp ETTEECGGGSCCCTTSSCEEEEESCCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEE
T ss_pred ECCEECHHCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEECCCCCCCCCC
T ss_conf 89998210056755577288515755404110110012332321025432674125357604541467503644344333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 240 (413)
T d1vh4a_ 161 AHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLL 240 (413)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCC
T ss_conf 11145653055202211121145544100002205899526642430334442233421220112003454146532000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~A~~t~a 320 (413)
T d1vh4a_ 241 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDG 320 (413)
T ss_dssp CCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEE
T ss_pred CCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHH
T ss_conf 21100110000112000110011023466422433222320155542041343124666640488653035655225665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~~~~~~~~~~~~~~ 400 (413)
T d1vh4a_ 321 QMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQ 400 (413)
T ss_dssp EEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 77665301567744875522899639816994000467898999999976999999999999998999998698299999
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
=
T Consensus 401 ~~~~~i~~~l~~~ 413 (413)
T d1vh4a_ 401 QVLARIGQRLPGG 413 (413)
T ss_dssp HHHHHHHTTSTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999872489
|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31186.54 Aligned_cols=1 Identities=100% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~ltl~d~d~~gK~VllRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~Vvl~SH~GRP~~~~~~d~~SL~pva~~ 80 (413)
T d1hdia_ 1 NKLTLDKLNVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAAE 80 (413)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHHH
T ss_pred CCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98754102868998999931587744990897489999999999999879998999537889999977854587999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~geilLLENvRF~~~E~~~~~~~~~~~~~~e~~n~~~f~~~La~l~DvyVND 160 (413)
T d1hdia_ 81 LKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVND 160 (413)
T ss_dssp HHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99986886066056513556554320234317980221104211134432011000110243699999876328889953
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 AF~~aHR~haS~~gi~~~~~~~G~LmekEi~~L~~~l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantf 240 (413)
T d1hdia_ 161 AFGTAHRAHSSMVGVNLPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTF 240 (413)
T ss_dssp CGGGTTCCCHHHHCCCCSCEEECHHHHHHHHHHHHHHTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHH
T ss_pred CHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEECCHHHHHH
T ss_conf 42111125762220135642116899999999876540788761699842554338999998875310154035468999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 L~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~ 320 (413)
T d1hdia_ 241 LKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320 (413)
T ss_dssp HHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 99715974563340322004677777789871984344541354124566555455442113588764431530236788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L~ 400 (413)
T d1hdia_ 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLE 400 (413)
T ss_dssp HHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHT
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHC
T ss_conf 88761587799988834566761538999999999985148998999377999999974986798479278799999987
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
|
T Consensus 401 G~~LPgi~aL~~~ 413 (413)
T d1hdia_ 401 GKVLPGVDALSNV 413 (413)
T ss_dssp TCCCHHHHTSCBC
T ss_pred CCCCCHHHHHHCC
T ss_conf 9996246352049
|
| >d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase S, AMPS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=31182.49 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~f~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~lvral~~~a~~aGA~pV~v~~~d~~i~r~~~~~~~~e~l~~~e~ 80 (413)
T d1zjca1 1 NYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEI 80 (413)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHHHHSCHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHCCCCC
T ss_conf 97899999999999983068999989999567439999999999998699648995087899999871899668353202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~a~i~i~~~~p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~a~A~~a~~~l 160 (413)
T d1zjca1 81 KSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPEL 160 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCCTTTTTTSCHHHHHHHHHHHHHHTHHHHHHHHTTCSCEEEEECCCHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC
T ss_conf 56679999999865884899726895242037989999999999999899999986476566999568767776645899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~e~~~~~~d~if~a~~lD~~dpv~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~gTDLt~~l~~~~~~~~~~~~~~~~~ 240 (413)
T d1zjca1 161 SVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKE 240 (413)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEEECTTBCCBCSEEEGGGTS
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf 87999999999999750788051799999999999999999854072479943898407999358737716875236777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~NlP~gEvft~P~~~~~~G~i~~~~~~~~~G~~~~~i~l~f~~G~vv~~~~~~~~~~l~~~l~~d~~a~~~gE~~i 320 (413)
T d1zjca1 241 QAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVAL 320 (413)
T ss_dssp SEEESBSSCCCEEECEEEEEEEEEEECSSCEEETTEEEEEEEEEEETTEEEEEEEEESHHHHHHHHTSSGGGGSEEEEEE
T ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEECEECCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 76648899800686131586137999782526298832481899989999999747659999876404866536767753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 g~n~~~~~~~~~~~~~~L~DEkgt~H~a~G~~Y~~~~~~~~~~~~~~~~~~G~n~s~~H~D~~i~~~~~~i~gv~~dG~~ 400 (413)
T d1zjca1 321 VPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSK 400 (413)
T ss_dssp CCSSSTTGGGCCCCSSHHHHTTTSCEEEEECCCGGGBTTGGGCCHHHHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCE
T ss_conf 16886543435442451587489744667756421113665578145401798676457876347871568999818978
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
.
T Consensus 401 ~~I~~~G~f~~~~ 413 (413)
T d1zjca1 401 ELVFENGNWASTF 413 (413)
T ss_dssp EEEEETTEECTTC
T ss_pred EEEEECCEECCCC
T ss_conf 8999899976769
|
| >d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31180.85 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~ 80 (413)
T d1lwda_ 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD 80 (413)
T ss_dssp CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC
T ss_conf 99750305777995486379999999999970678886279970788999874996769999999975977788867997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~ 160 (413)
T d1lwda_ 81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK 160 (413)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCCCEEEEECC
T ss_conf 32235444432210001568976387458721002578876788887727752254443503423226766320577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~ 240 (413)
T d1lwda_ 161 DGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 240 (413)
T ss_dssp TCCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 66542233200256652000001332025678999999997159605775046356600479999999999874003564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~ 320 (413)
T d1lwda_ 241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ 320 (413)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred CCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
T ss_conf 23799861455555565228988739997563405676677874389777764324787554333346566000000121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 iagk~iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~d 400 (413)
T d1lwda_ 321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 17765659599999999999973454444579999999999999999779988465887666655555677638999999
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
=
T Consensus 401 aV~~~L~~~l~~~ 413 (413)
T d1lwda_ 401 TIKSNLDRALGRQ 413 (413)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987529
|
| >d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3205 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31180.83 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~i~~~a~pl~~~d~~~~~~DL~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~vA~E 80 (413)
T d2qgma1 1 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAME 80 (413)
T ss_dssp CCSSHHHHHHHHHHHHCEECCCCCTTSCCGGGHHHHHHHTTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98427789999999846558778989876789999986479749998468667079999999999999997599789992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~d~~~~~~vn~yV~~g~g~~~~~~~~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~~s~~~v~~yl~~~~p 160 (413)
T d2qgma1 81 EDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRP 160 (413)
T ss_dssp EEHHHHHHHHHHHHHCCSCGGGTSCTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 69588999999986388787887787525177999999999970458978842699744465535469999999986196
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~ 240 (413)
T d2qgma1 161 DLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEIIPSEYIWAKATASAIEKFTTMLLP 240 (413)
T ss_dssp TSHHHHHHHHHTGGGSCSCHHHHTTSCHHHHHHHHHHHHHHHHHTSCC-----------CHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999999974603123478999775176788899999999999997676505432344899999999999999999706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~RD~~Maenl~~~~~~~~~KiivwAHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~ 320 (413)
T d2qgma1 241 NDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYS 320 (413)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHCSCEEEECCHHHHCSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCC
T ss_conf 87401377899999999999974789978999554110757565433666589999998488469999873466041257
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~~~p~~~~s~e~~l~~~~~~~~~ld~r~~~~~~~~~l~~~r~~r~iG~~y~P~~~~y~~~~~~~~fDa 400 (413)
T d2qgma1 321 EYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDI 400 (413)
T ss_dssp CC-----CCCEEEECCCCTTSHHHHHHHSSCSEEEEEGGGCCHHHHHHHHSEEEEECCCSCC-----CEEEEEHHHHCSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCHHHHCCE
T ss_conf 77875566303678999952699997135877467552004535678883711211310244588764446895997978
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
=
T Consensus 401 li~i~~ttPa~~~ 413 (413)
T d2qgma1 401 IFHIRKTSPSHIK 413 (413)
T ss_dssp EEEEEEECBCCBC
T ss_pred EEEECCCCCCCCC
T ss_conf 9997146703129
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=100.00 E-value=0 Score=31187.53 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 1 EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp CCCCCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 98427705889999888999999999865998589967787489999999999739998999489999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vIVv~~~a~~~~l~~p~~~~~~~l~l 160 (413)
T d1t5la1 81 PHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSL 160 (413)
T ss_dssp TTSEEEEECCGGGTCCCSEEETTTTEEECCCSCCCHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCCCCHHHHHHTSEEE
T ss_pred CCCCEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHEEEEE
T ss_conf 87745432421211442014743443322345677788888766655203567714653000253257857843105898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~G~~i~~~~l~~~L~~~GY~r~~~V~~~GeFsvRG~IiDIfp~~~~e~PvRIEffgDeIesIr~Fd~~tQrs~~~~~~v 240 (413)
T d1t5la1 161 RVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHV 240 (413)
T ss_dssp ETTCSCCHHHHHHHHHHTTCEECSSSCCTTEEEECSSEEEECCTTCSSEEEEEEESSSSEEEEEEEETTTCCBCCCCSEE
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCCCCCCCCEEEECCHHEEEECCCCCCCCCCCCCCEE
T ss_conf 66862528899999998435103100000205775351642478533564030650301103551135457211243179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~I~Pa~e~i~~~~~~~~a~~~i~~el~~~~~~~~~~~~~~ea~rl~~~~~~d~e~l~e~~~~~gie~y~~~~~~r~~~~~ 320 (413)
T d1t5la1 241 AIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGST 320 (413)
T ss_dssp EECCSSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTCC
T ss_pred EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 96346036269999999999999999999999987785889999998767579999852764444555443204666688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~tLlDY~~~d~l~~iDE~~~~~~q~~~~~~~~~~r~~~l~e~G~~LP~a~dn~pL~~ee~~~~~~~~i~vsatP~~~e~ 400 (413)
T d1t5la1 321 PYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYEL 400 (413)
T ss_dssp CCCHHHHSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHHTSSCGGGGGSSCCCHHHHHHHCSEEEEEESSCCHHHH
T ss_pred CCHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 73244104787089993626569999999988899899888651657556557976889999864987999579970557
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
=
T Consensus 401 ~~~~~~v~q~irp 413 (413)
T d1t5la1 401 EHSPGVVEQIIRP 413 (413)
T ss_dssp HHSSSCEEECCCT
T ss_pred HHCCCEEEEEECC
T ss_conf 7468846886286
|
| >d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Maltoporin-like domain: Sucrose-specific porin species: Enterobacterium (Salmonella typhimurium) [TaxId: 90371]
Probab=100.00 E-value=0 Score=31177.69 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~GfeFhGY~RsG~g~s~~g~~~~~~~~~~~~~~~~g~~gRLGNE~d~y~El~l~~~~~~~~g~~~~~~~~~a~~~~~~~d 80 (413)
T d1a0tp_ 1 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYND 80 (413)
T ss_dssp CCEEEEEEEEEECCEETTSSCCCCCTTCSGGGGGTCCCCCTTCCCSEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCSS
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 95168527785734847898654563216565666565424664351798883457781599599999997115655578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~q~yve~~nl~~f~~~~~~a~~WaGkR~y~r~~dIhi~D~~y~~~sG~GaGieni~lG~g~~~~~~~~~~ 160 (413)
T d1a0tp_ 81 WTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGR 160 (413)
T ss_dssp CCGGGCCCEEEEEEEEEESCTTCCGGGTTCEEEEEEEECTTCEEEGGGTEEEEBCEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCCCHHEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCEECEEEEECCCCCEEEEEEEEC
T ss_conf 75666530110303464586434677998639744420366567542310468658857564721037884688999942
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~G~~~G~nk~~ 240 (413)
T d1a0tp_ 161 NFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTA 240 (413)
T ss_dssp EEECTTCGGGEEEEEEEEEEEEETTEEEEEEEEECTTGGGCBCSSSSBSCSSCCSEEEEEEEEEEEEESTTSSEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCEEEEH
T ss_conf 56776667875111687531157379999964303773443215654346764465308999996142000358635151
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 lQyg~G~~a~~~~~~~~~~~~~~~~s~Rl~~~G~~~~~~~~~~~~~~~y~~~~d~~~~~~~~~~~s~gvRP~y~~~~~~~ 320 (413)
T d1a0tp_ 241 LLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFA 320 (413)
T ss_dssp EEEEEETTCSCSBTTCCTTCCTTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSSTTCEEEEEEEEEEEEEESSSSEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCEE
T ss_conf 62375715577565787862799508999986644135876776668999851667789970799999888589668689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~TlA~~~~~g~~~~fwsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~ 400 (413)
T d1a0tp_ 321 LAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSG 400 (413)
T ss_dssp EEEEEEEEEEEEECTTGGGCCCEEEEEEEEEEEEEEESSCTTCTTCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSS
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 99998886640344675366666783589999763132897876779789999999805412200224565454677888
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
-
T Consensus 401 ~~~~fGvQ~E~Ww 413 (413)
T d1a0tp_ 401 GEWSFGVQMETWF 413 (413)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
T ss_conf 8789999998769
|
| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Glucodextranase, domain A species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31176.96 Aligned_cols=1 Identities=0% Similarity=-1.855 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~S~l~lk~~~~~~~~GaiiAapt~~~pe~~~~~~n~d~Yry~W~RDaa~~~~al~~~G~~~~a~~~ 80 (413)
T d1ulva1 1 PATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARG 80 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98657889999999999999973468999848875888887666775689871166180599999999986998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~~~i~~a~~~l~~~~~~~~~~lWEe~~ 160 (413)
T d1ulva1 81 VEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETG 160 (413)
T ss_dssp HHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999985079996056546687767776763038999999999853001678999999999999738898745454678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~~T~~~~~~aL~~aa~la~~~gd~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~y~~r~~~~~~~~~~~~~~~~~ 240 (413)
T d1ulva1 161 GYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGN 240 (413)
T ss_dssp BEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSCTTSCCEEECST
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 85431189999999999999998398167889999999999999996018655623321011036666654320000123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~vDas~l~~~~~g~~~~~d~r~~~t~~~i~~~L~~~~~~g~~~~Ry~~D~y~~~~~g~~~~~~~i~t~W~~ 320 (413)
T d1ulva1 241 GAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPL 320 (413)
T ss_dssp TCCEEEGGGCCBGGGGHHHHTTSSCTTCHHHHHHHHHHHHHHEEEETTEEEECSBTTCCCSCCTTSCCCSSCCCCCBCTH
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45666677765788763112178798887899999999998546778777420024667657788887633112789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~a~~~~g~~~~A~~ll~~l~~~~~~~G~LpEqv~~~~~~~~~~~~~~~~~~sa~PlaWS~A~~i~l~~~l~~g~~~ 400 (413)
T d1ulva1 321 LSGERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPV 400 (413)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHTSCTTCCCCSCBBCCSSCCSSCCCBTSBCSSCBSCHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998648788999999999976687886563016788830025778999888776374789999999998669976
Q ss_pred ------------E
Q ss_conf ------------9
Q 001846 864 ------------V 864 (1006)
Q Consensus 864 ------------V 864 (1006)
=
T Consensus 401 ~~~~~~~~~~~~~ 413 (413)
T d1ulva1 401 ETPQNVAARYAAG 413 (413)
T ss_dssp SSCHHHHHHHTSS
T ss_pred CCCHHHHHHHHCC
T ss_conf 6762899874149
|
| >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YgbK-like superfamily: YgbK-like family: YgbK-like domain: Hypothetical protein HI1011 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=31109.03 Aligned_cols=1 Identities=100% Similarity=1.931 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 i~iIADDlTGA~dt~~~~~~~G~~t~~~~~~~~~~~~~~~dvv~i~t~SR~l~~~eA~~~v~~~~~~l~~~~~~~~~~Kv 80 (412)
T d1yzya1 1 LGVIADDFTGASDIASFLVENGLSTVQMNGVPTQSLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCTQFYFKY 80 (412)
T ss_dssp CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCSSCCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 96895273528999999998799099971788500057899899985778999999999999999999863897158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~s~~DStlRGnig~Ei~a~~~~~~~~~~~v~PA~P~~gR~t~~G~~~v~g~pl~~t~~a~dP~tP~~~s~l~~ll~~qs~ 160 (412)
T d1yzya1 81 CSTFDSTAKGNIGPVTDALLDELNEDFTVITPALPVNGRTIFNGYLFVGDVLLSESGMKNHPITPMVDANLMRLMDAQAK 160 (412)
T ss_dssp CTTCCCCTTCTHHHHHHHHHHHHTCCCEEECCCBGGGTEEEETTEEEETTEEGGGSGGGGCSSSCCCCCBHHHHHHHHCS
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 73133777678589999999763997699946756577699998999898875676100288989775027777555237
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~v~~i~~~~v~~~~~~~~~~l~~~~~~~~~~vv~Da~t~~dL~~ia~a~~~~~~~~GsaGla~~l~~~~~~~~~~~~~~ 240 (412)
T d1yzya1 161 GKTGLVAYADVIKGASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKLVTGGSGLGAYMAARLSGGKKGTNAF 240 (412)
T ss_dssp SCEEEECHHHHTTCHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHTTTCSEEEESHHHHHHHHHHHHTSCCGGGCC
T ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf 85354219988645067999999876179866998369889999999973288079954407778887512466654345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~Lvv~GS~s~~T~~Ql~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1yzya1 241 TPTKGKTVVLSGSCSVMTNKQVEKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQ 320 (412)
T ss_dssp CCCSCCEEEEECCCSHHHHHHHHHHTTTSCEEECCHHHHHHCTTHHHHHHHHHHTTTTSSSCCEEECCCCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 78888679998267488999999998509859963899617817999999999998736997588843764555566543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~lv~tGGdTa~av~~~Lg~~~l~~~~ei~pGvp~~~~~~~gl~ivtK~G~fG~ 400 (412)
T d1yzya1 321 FGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPGVPWLKAVEEDIFLALKSGNFGK 400 (412)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHHHHHTCCEEEEEEEEETTEEEEEESSSSCEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCC
T ss_conf 01677999999999999999875587869992639999999975998666757426982079766998079997898898
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
+
T Consensus 401 ~D~~~~a~~~~~ 412 (412)
T d1yzya1 401 EDFFEYAQGMFL 412 (412)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHHHC
T ss_conf 569999999759
|
| >d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Malonamidase E2 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=0 Score=31107.16 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 80 (412)
T d1ocka_ 1 MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYR 80 (412)
T ss_dssp CCCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCCCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGT
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 98789999999869998999999999999976961598174439860766798688879987661778974166486661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~PA 160 (412)
T d1ocka_ 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160 (412)
T ss_dssp TCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSCCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHH
T ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 78875301477652012433000001666502566543334466666777678761111034566557654023441015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 240 (412)
T d1ocka_ 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAE 240 (412)
T ss_dssp HHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGGCCCCHHHH
T ss_pred HHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 55302101344100123344443201111223445188999999864288721244776444334432323345106777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (412)
T d1ocka_ 241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARR 320 (412)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 78888888888764023223453102333455541125789887777640242321245544333210122210001124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL 400 (412)
T d1ocka_ 321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHAL 400 (412)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCCCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 67899999999982799999689988776300045687577599999789849983668999607688889999899999
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
=
T Consensus 401 ~~A~~~E~alg~ 412 (412)
T d1ocka_ 401 ATAWFLEDALAK 412 (412)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998583
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=0 Score=31104.23 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ 80 (412)
T d1yaaa_ 1 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp CTTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 94734458747998699999998467898968830677748889988868999999999728654777899877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~ 160 (412)
T d1yaaa_ 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 99999723447665666526871442046799999987503899877246435740679999859910105633334344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1yaaa_ 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 21101000124578751799944899985445899999999866114887974520010000588656524432223212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 320 (412)
T d1yaaa_ 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46887599982577645676760799975056666788888888889999987736797688999999706847789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l 400 (412)
T d1yaaa_ 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHH
T ss_conf 89999999999999999999997289888753689952798229699999999996788878988798515988889999
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
-
T Consensus 401 ~~ai~~v~k~~~ 412 (412)
T d1yaaa_ 401 AKAIDEVVRFYA 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998509
|
| >d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=31103.14 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~v~sE~g~Lk~Viv~~Pg~e~~~l~p~~~~~~lf~~~~~~~~a~~eh~~f~~~L~~~Gv~V~~l~~~l~e~~~~~~~ 80 (412)
T d1rxxa_ 1 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEA 80 (412)
T ss_dssp CCSEECCSSSCEEEEEECCCCHHHHTCCTTTTGGGTCSCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHTTSHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHH
T ss_conf 97753777100007896698388773690015664367788999999999999999997798899705768877349588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plpn~~F~R 160 (412)
T d1rxxa_ 81 LKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTR 160 (412)
T ss_dssp HHHHHHHHSCHHHHCTTTHHHHHHHHHTSCHHHHHHHHHHCEEGGGSCSCHHHHHHHHHHHHSCCCCEEECCCGGGGCTT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHEECC
T ss_conf 99999875032334655899999998708989999998626421003444332112211000356533578862121315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 D~~~~i~~gvii~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~EGGDvl~~g~~~l~~g~s~RTn 240 (412)
T d1rxxa_ 161 DTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSS 240 (412)
T ss_dssp TTEEECSSEEEECCCSSGGGHHHHHHHHHHHHHCHHHHTSCCEEEECCTTSCCTTCCCCGGGEEEEETTEEEEEESSSSC
T ss_pred CCCCEECCCEEECCCCCHHHCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 77534669789668997365436799999998580220576310147655547766042560899679689999431050
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~gi~~L~~~l~~~~~~~~v~~~~~p~~~~~~HLDt~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1rxxa_ 241 RQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTF 320 (412)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEECCC--CCCCHHHHEEEEETTEEEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEHHHCCCCCCEEEECCCCCCCCCEEECCCCCH
T ss_conf 99999999986642806775502678765420025427751798599831242754430442156655551010254317
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~l~~~l~~~~~~~i~~~~d~~~~~~e~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gi~vi~v~~~el~~~gGg~h 400 (412)
T d1rxxa_ 321 LEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGH 400 (412)
T ss_dssp HHHHHHHTTCSCCEEEECCCSCC--CCSSCCCCCCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCTTTTSSSCCTT
T ss_pred HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCE
T ss_conf 89999971898707955798525555666406520899679989984889999999997899899966567413798867
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
=
T Consensus 401 C~T~pl~Re~i~ 412 (412)
T d1rxxa_ 401 CMTCPIVRDPID 412 (412)
T ss_dssp TTCEEEEECCCC
T ss_pred ECCCCCCCCCCC
T ss_conf 887034627999
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=0 Score=31102.40 Aligned_cols=1 Identities=0% Similarity=-0.193 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LRea 80 (412)
T d1bw0a_ 1 WDVSMSNHAGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREA 80 (412)
T ss_dssp CCCCCCHHHHTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 98781234568852899999856777799984788697899999852129999999998628777788998688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 160 (412)
T d1bw0a_ 81 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 160 (412)
T ss_dssp HHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999975475435687888886999446222025666543114432046411330144455405864222332223333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1bw0a_ 161 EADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 240 (412)
T ss_dssp EECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12467887653111222222334333332201443023211222377666520217875447888764100001223433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 320 (412)
T d1bw0a_ 241 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM 320 (412)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11311555755756877743201240433003555554034553347750343202222333222333322110278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal 400 (412)
T d1bw0a_ 321 YLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAV 400 (412)
T ss_dssp HHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 99999987349254378971499995782343788899999999998699999966214899939999738999999999
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
-
T Consensus 401 ~Rl~~~l~~~~~ 412 (412)
T d1bw0a_ 401 ERIKAFCQRHAA 412 (412)
T ss_dssp HHHHHHHHHHBC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986179
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=0 Score=31101.99 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lr 80 (412)
T d1ajsa_ 1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFR 80 (412)
T ss_dssp CCCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99584440876899769999999836899996884178875888999886899999999973787688889977789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~ 160 (412)
T d1ajsa_ 81 TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 99999985157843245662230365305678899999988764047998989994786331689999859927874223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 240 (412)
T d1ajsa_ 161 WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI 240 (412)
T ss_dssp EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHH
T ss_conf 36233554378999999725677389995589998687899999999999986389789830765654059865651566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1ajsa_ 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT 320 (412)
T ss_dssp HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 65444124321234663223577777345445616788999999999998631535641689999999853888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~ 400 (412)
T d1ajsa_ 321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHH
T ss_conf 99999999999999999999998489887036658975798459899999999985999981898688336988889999
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
=
T Consensus 401 a~aI~~av~~~~ 412 (412)
T d1ajsa_ 401 ATSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999639
|
| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Hypothetical protein TT1467, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=31105.16 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~lalvlH~HqP~vr~~~~~~~~e~w~~~a~~e~YlPll~~~~~l~~~~~~~k~t~~lsP~LleqL~D~~l~~~f~~~l 80 (412)
T d1ufaa2 1 MARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYA 80 (412)
T ss_dssp CEEEEEEEEECCCCCTTSCSTTTSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCHHHHHHHHHHH
T ss_conf 96379998257876568987874245999999998888999999998428983399997789999850878888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~ 160 (412)
T d1ufaa2 81 KDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWA 160 (412)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHH
T ss_conf 99998750556532340667888888999999999999965458999999997598688835412333321796799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Qi~~~~~~~~~~fG~~P~G~W~~E~a~s~~~l~~~~~~g~~~~~~~gl~~iL~~~Gi~y~~~d~~~l~~~~~~~~~~~~~ 240 (412)
T d1ufaa2 161 QIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPYGEAA 240 (412)
T ss_dssp HHHHHHHHHHHHHSSCCCBEECGGGCBCCSEEECCSSSSSCCEEECCHHHHHHHTTCCEEEECHHHHHCSCCCCC-----
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCCC
T ss_conf 99999999999759998867674222044113433321442102452889999739978997749985078766555556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~y~~~~~~~~v~~ffRD~~lSd~I~~~~~Gf~~~~~~~e~a~~d~~~~l~~~r~t~~~~~~~~~~~~Dgen 320 (412)
T d1ufaa2 241 LGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEA 320 (412)
T ss_dssp ---CCCCGGGGSCEECTTSCEEEEBCHHHHHHHHCTTTSGGGSTTSBCSSCCCTTTCCCCEECCCSSCCGGGCEECCHHH
T ss_pred CCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 67533345650330489738999668777546332326988765356665221334489987113467855361068899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 awe~~~~~a~~Fl~~l~~~~~~~~~~ivv~~~D~ElFGhww~eg~~fL~~l~~~l~~~~~i~~tT~se~l~~p~~~v~lp 400 (412)
T d1ufaa2 321 AFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALP 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHTCSSEEECCHHHHTCSCCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCEEECC
T ss_conf 99998977999999999875058887589445588604024310999999999863189839976999982889714258
Q ss_pred -----------E
Q ss_conf -----------9
Q 001846 864 -----------V 864 (1006)
Q Consensus 864 -----------V 864 (1006)
|
T Consensus 401 ~sSWg~gg~~~v 412 (412)
T d1ufaa2 401 EGSWGRGGDHRV 412 (412)
T ss_dssp SBCSSGGGSSTT
T ss_pred CCCCCCCCCCCC
T ss_conf 988767898889
|
| >d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum, serotype E [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype E [TaxId: 1491]
Probab=100.00 E-value=0 Score=31032.56 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~InnFNyndPVnn~~I~~~r~~~~~~~~KAFkI~~nIWViPER~~~~t~p~d~~pp~~~~~~d~~yYDpnyLsTD~EKD 80 (411)
T d1t3ca_ 1 PKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSYYDPNYLQSDEEKD 80 (411)
T ss_dssp CCCCCCCTTSCCCSSSEEEEECTTCSSCEEEEEEETTEEEEEEECCTTCCGGGGSCSCSTTTTSSCCBCTTTTCSHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
T ss_conf 97666667898899728999448899712435620776875111247778212489732346887513753145621788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~FLk~iIKLf~RINs~~~G~~LL~~Is~aiPf~G~~~t~~~ef~~~~~~~~n~~~s~~~~~~~~~NlvIfGPg~nI~en~ 160 (411)
T d1t3ca_ 81 RFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTPDNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETN 160 (411)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHTCCCCSCCTTSCTTSCCCCTTTCEEEECTTSCEEEECCSEEEEECCSBTTCCE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCC
T ss_conf 99999999999863745799999999736875789999853311355430356336885201310269987885425665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~n~~~s~nGfGt~~~i~F~P~~t~~f~~~~~~~F~~DPAl~L~heLIhsLh~LYGIk~i~~~~~i~~~~~~~~ 240 (411)
T d1t3ca_ 161 SSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFNDNSMNEFIQDPALTLMHQLIHSLHGLYGAKGITTKYTITQKQNPLI 240 (411)
T ss_dssp EEECCCGGGCCGGGTTSCCCEEEECCTTEEEEEECTTSCEEECCHHHHHHHHHHHHHHHHTTCCTTTTTCEECTTTTTCC
T ss_pred CEEEEECCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 03787405776322476504799976634786136777714248899999999999987618667887642101000556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~v~~eelltfGG~D~~~I~t~~~~~~~~~~l~~f~~ia~~l~~i~~~n~~~n~yK~~~~~Ky~~~~d~~g~~~vN~ 320 (411)
T d1t3ca_ 241 TNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNI 320 (411)
T ss_dssp SCTTCEEHHHHHHHCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTSCCSCGGGHHHHHHHHHHTTEEECTTSCEEECH
T ss_pred HCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEH
T ss_conf 41477554000300687800048711677999999999999999888627884178999999998577657887288548
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~kF~~~y~~l~~fTE~~~~~~f~v~~r~~Y~~~y~~~~~~nlldd~iYti~eGFNi~nl~~n~~GQN~~~N~~~~~~i~~ 400 (411)
T d1t3ca_ 321 NKFNDIFKKLYSFTEFDLATKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITG 400 (411)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCCCSCSCSCCCEEEESCTTCTTTCBTTTBTCCGGGGGGGGGGBTTTSGGGEECCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 99999999986223344668886887776886357632255467653221467433432001367653238465346785
Q ss_pred ----------E
Q ss_conf ----------9
Q 001846 864 ----------V 864 (1006)
Q Consensus 864 ----------V 864 (1006)
.
T Consensus 401 ~glv~~~~~~C 411 (411)
T d1t3ca_ 401 RGLVKKIIRFC 411 (411)
T ss_dssp TTHHHHHSSCC
T ss_pred CHHHHHHHHCC
T ss_conf 20588776339
|
| >d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: Putative NAG isomerase YihS species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31029.94 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~r~wL~~~~~~l~~~~~~~~~~gGF~~l~~dG~~~~~~~k~~~~~aR~~~~fs~a~~~g~~~~~~~A~~g~~f 80 (411)
T d2afaa1 1 KWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKA 80 (411)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHGGGEETTEECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 97687777899999999999864617789972346899897888772147768999999999975897799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 L~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~~g~~~~~~~a~~~~~~l~~~~~~~~~G~~~~~~~~~ 160 (411)
T d2afaa1 81 MNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEA 160 (411)
T ss_dssp TTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf 99856767998489862699986532104889999999999988588889999999999999996075689743220555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~n~~mhl~eA~~~l~~at~d~~~~~~a~~~~~~~~~~~~~~~~~~l~E~f~~dw~~~~~~~~~~~~~~~~~ 240 (411)
T d2afaa1 161 FSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRA 240 (411)
T ss_dssp SCCBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEECTTCCBCTTTTTTCTTCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 67754424467448999999999884288999999999999888765156678411112666541443301264324564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~pGH~iE~aWlll~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~d~d~~gg~~~~~~~~g~~~~~~k~~W~qaEa 320 (411)
T d2afaa1 241 YGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEA 320 (411)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSSCCEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 33474138899999999999973134567299999999999999985726578980584015899967777455599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 i~a~l~ly~~tgd~~yl~~a~~~~~~~~~~f~D~~~G~W~~~l~~~g~p~~~~~~g~~~~yH~~~a~~~~~~~~~~~~~~ 400 (411)
T d2afaa1 321 MGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAP 400 (411)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCSEECTTSCBCC----CCCCCTTTHHHHTGGGSCSSSCHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999866989999999999999998687999983464589997998888999987206999998615889974218
Q ss_pred ----------E
Q ss_conf ----------9
Q 001846 864 ----------V 864 (1006)
Q Consensus 864 ----------V 864 (1006)
-
T Consensus 401 ~~~~~~~~~~~ 411 (411)
T d2afaa1 401 AVAAGLLDINA 411 (411)
T ss_dssp HHHTTCTTTTC
T ss_pred HHHCCCCCCCC
T ss_conf 88701346689
|
| >d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Formin homology 2 domain (FH2 domain) superfamily: Formin homology 2 domain (FH2 domain) family: Formin homology 2 domain (FH2 domain) domain: Bni1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31026.78 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~PkP~~klK~l~W~ki~~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~~~~~~~~~lLd~kr~qni 80 (411)
T d1ux5a_ 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF 80 (411)
T ss_dssp CCCCCSSCBCCCCCCCCSSCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHHHHTTTSBCCSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 96989999989776159998988200204410036788663099999986447777776666666662001767899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~~L~~ 160 (411)
T d1ux5a_ 81 GINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQR 160 (411)
T ss_dssp HHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCSTTBCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCH
T ss_conf 89998706999999999998368542487899999830210134799999817993789999999851445478454387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~A~GF 240 (411)
T d1ux5a_ 161 ADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQAQGF 240 (411)
T ss_dssp HHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999862334499999999999999999999999999999999999957679999999999860625899871235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 kL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~ 320 (411)
T d1ux5a_ 241 KLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLS 320 (411)
T ss_dssp CGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred EHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 23898876521179998018999999999869075332877888998861899999999999999999999999862025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~ 400 (411)
T d1ux5a_ 321 DSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLA 400 (411)
T ss_dssp CTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40002511169999999999999999999999999999999999983899888789999999999999999999999999
Q ss_pred ----------E
Q ss_conf ----------9
Q 001846 864 ----------V 864 (1006)
Q Consensus 864 ----------V 864 (1006)
=
T Consensus 401 ~~e~e~~~~k~ 411 (411)
T d1ux5a_ 401 AEEEERLYIKH 411 (411)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987209
|
| >d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome p450 152a1 (Bs-beta) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=31020.76 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 p~~~~~~~~l~~~~~~~~f~~~~~~kyg~~if~~~~~g~~~vvv~~pe~i~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (411)
T d1izoa_ 1 PHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQ 80 (411)
T ss_dssp CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTTCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCC
T ss_conf 98997014999997799999999999799769999889528999799999999769997113777287777644899645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~dg~~h~~~R~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~l~~~v~~~~~g~~~~~~~~~~~~~~ 160 (411)
T d1izoa_ 81 GMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVKERADD 160 (411)
T ss_dssp GCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 77808999999999873199999999999999999999985425751299999999998888874887647999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~k~~~a~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ag~~ 240 (411)
T d1izoa_ 161 FIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIV 240 (411)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999876321310399999999999999999998621224586322899999986751775311013456665320332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 tts~~l~~~l~~L~~~P~vq~kl~~e~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ipkgt~V~~~~~~~~~dp 320 (411)
T d1izoa_ 241 AISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDP 320 (411)
T ss_dssp THHHHHHHHHHHHHHSTHHHHHHHTCCHHHHHHHHHHHHHHSCCCCEEEEEECSCEEETTEEECTTCEEEEEHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 30288999999987310123221001330499999999986503322344333334431043464221101355530442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~p~~F~PeR~~~~~~~~~~~~pFg~G~~~~~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~ 400 (411)
T d1izoa_ 321 RLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLARMPSLPE 400 (411)
T ss_dssp TTSSSTTSCCGGGGTTCCCCSSSCCTTCSSCTTSSSCCTTHHHHHHHHHHHHHHHHHTEEEECCSCCCCCCSSSSSCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCC
T ss_conf 00899562186535899999776479899899988088439999999999999999826898179986887255377568
Q ss_pred ----------E
Q ss_conf ----------9
Q 001846 864 ----------V 864 (1006)
Q Consensus 864 ----------V 864 (1006)
=
T Consensus 401 ~~~~~~~~~Rr 411 (411)
T d1izoa_ 401 SGFVMSGIRRK 411 (411)
T ss_dssp TCCEEEEEEEC
T ss_pred CCCEEEEEECC
T ss_conf 99079988693
|
| >d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=30957.10 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~d~~~l~~~s~~wwpaD~G~ygP~lVRl 80 (410)
T d2ccaa1 1 MKYPVEGGGNQDWWPNRLNLKVLHQNPAVADPMGAAFDYAAEVATIDVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRM 80 (410)
T ss_dssp CCCGGGTCCGGGTSTTCCCGGGGSCSCGGGCTTCTTCCHHHHHTTCCHHHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 98987899766628644587555148877899999862899986269999999999998544335765456633001100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 AWHsAGTYR~~DgRGGanGg~iRfaPe~sWp~N~~LdkAr~LL~piK~ky~~~iS~ADLi~LAG~vAiE~mGg~~i~f~~ 160 (410)
T d2ccaa1 81 AWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGF 160 (410)
T ss_dssp HHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHTTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCB
T ss_pred HHHHHCEEECCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEECCEECCCCCCCCC
T ss_conf 22331301212677899877466541115312231899999988888760546567660336350210141255112455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 GR~D~~~~~~~~~g~~~~~~~~~R~~~~~el~d~l~~~~m~li~~np~g~~g~pd~~~~a~~lRd~f~rMglnD~E~VAL 240 (410)
T d2ccaa1 161 GRVDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRETFRRMAMNDVETAAL 240 (410)
T ss_dssp CCCCCSSCCCCCCCSCSSTTCCCCEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 54435544200378866377899857632456754444458767787534689871017999999998706871766533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 iaGgHtlGk~Hg~~~~~~~g~~p~~a~~~~~G~g~~~~~~~~~~~~~~~sG~eg~WT~~P~~~dN~yF~~Ll~~~we~~k 320 (410)
T d2ccaa1 241 IVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEILYGYEWELTK 320 (410)
T ss_dssp HHHHHTSCCCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCCCCSCTTSCSSHHHHHHHHSCEEEEE
T ss_pred HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECC
T ss_conf 12421113346788734257784658702157755688787778555367865547668514535777541356515214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 sp~g~~qw~~~d~~~~~~~pda~~~~~~~~~ml~tDlaL~~Dp~~r~iae~ya~d~d~F~~dFa~AW~KL~hrDmgp~~r 400 (410)
T d2ccaa1 321 SPAGAWQYTAKDGAGAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVAR 400 (410)
T ss_dssp CTTSCEEEEEGGGTTTTCBCCTTSCCCBCCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGG
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 45655310355777777777776776678764226677520987899999997099999999999999986125796342
Q ss_pred ---------E
Q ss_conf ---------9
Q 001846 864 ---------V 864 (1006)
Q Consensus 864 ---------V 864 (1006)
-
T Consensus 401 ~~g~~~p~e~ 410 (410)
T d2ccaa1 401 YLGPLVPKQT 410 (410)
T ss_dssp CBSTTCCSCC
T ss_pred CCCCCCCCCC
T ss_conf 0689999889
|
| >d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30956.67 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~v~s~~~~y~~~~i~~~y~y~~t~v~~~~~g~~~v~p~~~~~~f~t~~~~p~klGVmlVG~GGnngTT~~aGv~An 80 (410)
T d1p1ja1 1 ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLAN 80 (410)
T ss_dssp CCEEEECCTTEEEETTEEEEEEEEEEEEEEECTTSEEEEEEEEEEEEEEEECCCCSSEEEEEETTTSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCEEECCCEEEEEEEECCEEEEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 96569828980773411799988510389976897089987567789994256786478998417852899999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 k~gl~w~tk~G~~~pny~GSltq~stirlG~~~~g~~~~~p~kd~lPl~~p~DiVfGGWDI~~~nl~eAa~rA~VLd~~l 160 (410)
T d1p1ja1 81 KHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDL 160 (410)
T ss_dssp HTTCCEEETTEEECCCCTTCHHHHCEEEEEECTTSCEEEEEGGGSSCCCCGGGEEEEEECSSCCCHHHHHHHHTCSCHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHH
T ss_conf 62786333556546763230210031431455788845663776188898412789245699988999998769999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~ql~~~L~~i~P~psV~~~dfiaanq~~ra~nvi~~d~~~~~~~~sk~e~ve~Ir~DIr~Fk~~n~lDrVVVlWtASTE 240 (410)
T d1p1ja1 161 QQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 240 (410)
T ss_dssp HHHHHHHHTTCCCBCBCCCGGGSCGGGGGGCCCBSCBCTTSCBCSCCHHHHHHHHHHHHHHHHHHTTCSCEEEEECSCCC
T ss_pred HHHHHHHHHCCCCCCCEECCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999998638634320060555212112102322456545546655899999999999999987389748999458887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 r~~~~~p~v~~t~e~l~~ai~~n~~eIsPS~lYA~AAI~eG~pyvNgsPq~t~vPal~eLA~~~gv~iaG~DfKdslLA~ 320 (410)
T d1p1ja1 241 RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKDSLLAT 320 (410)
T ss_dssp CCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 68888832124399999887559987787999999999739984468864456579999984279458715124322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 pli~dL~vl~e~~trI~~~~dg~vl~d~~~f~~~~~Vls~Lsyl~KAPl~p~g~~vvnal~~Qr~~len~~ra~~Gl~p~ 400 (410)
T d1p1ja1 321 PLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQ 400 (410)
T ss_dssp HHHHHHHHHHHHHHTEEEEECBTTBTTCSCCBCCCSBCGGGGGGBSSCCCCTTCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999887650368621765457622162153089898887538989999965016888999999999997289986
Q ss_pred ---------E
Q ss_conf ---------9
Q 001846 864 ---------V 864 (1006)
Q Consensus 864 ---------V 864 (1006)
+
T Consensus 401 ~~m~le~~l~ 410 (410)
T d1p1ja1 401 NELRFEERLL 410 (410)
T ss_dssp CCCCHHHHCC
T ss_pred CCCEEEEECC
T ss_conf 6651146329
|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30951.64 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~Lf~~lgl~~ 80 (410)
T d1kfsa2 1 HKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKP 80 (410)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99689999999988999999999739898899999999999999999999999995990899999999999997429998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~t~~g~~~t~~~~L~~~~~~~~~~~~l~~~r~~~k~~~~~~~~~~~~~~~~~gri~~~~~~~gt~TGR~s~s~pnlQn 160 (410)
T d1kfsa2 81 LKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQN 160 (410)
T ss_dssp CCCCC----TTTCCHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSSBCCEEESSCCSSSCCEEESSCGGG
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCCCCC
T ss_conf 76478898554055410112223899999999999999887652433125778995412575124200232136863035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~P~~~~~~~~iR~~fia~~G~~lv~~D~sqiE~Rv~A~ls~D~~l~~~~~~g~D~h~~~A~~~~~~~~~~~~~~~R~~aK 240 (410)
T d1kfsa2 161 IPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAK 240 (410)
T ss_dssp SCSSSHHHHHHHTTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHTTCCTTTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHEEECCCCCEEEEECHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCHHHHHH
T ss_conf 78887423255632736999779985545384443444676224788885265067641999819973210220043320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~g~~YG~G~~~la~~l~~s~~eA~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~v~t~~Grr~~~~~~~~~~~~~r~~ 320 (410)
T d1kfsa2 241 AINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAA 320 (410)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHH
T ss_pred HEEEEHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 31230141356778998809899999999999988787846899999999997595530368503699754405878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~r~a~N~~iQg~aadi~k~a~~~i~~~l~~~~~~~~~v~~VHDEiv~ev~~~~~~~~~~~i~~~M~~~~~~~vPl~~e~ 400 (410)
T d1kfsa2 321 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEV 400 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 88888652013389999999999999999852899889998453258998389999999999999846456898468320
Q ss_pred ---------E
Q ss_conf ---------9
Q 001846 864 ---------V 864 (1006)
Q Consensus 864 ---------V 864 (1006)
-
T Consensus 401 ~~g~~w~e~h 410 (410)
T d1kfsa2 401 GSGENWDQAH 410 (410)
T ss_dssp EEESBHHHHC
T ss_pred CCCCCHHHHC
T ss_conf 5628868829
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=100.00 E-value=0 Score=30949.60 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T d1uuqa_ 1 EHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNG 80 (410)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSS
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99879989999999989999999317765566567879999999999999977995999687366545555568776554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1uuqa_ 81 FGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQE 160 (410)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBSSSTTCHHHHHHHHHHTCCCCCHHHHCCHHHHHHHHHGGGGCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 33245889999999999999739856874034556657754465312477767655555553335665300368999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~l~NE~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~dp~~~v~~~~~~~~~~ 240 (410)
T d1uuqa_ 161 YRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGS 240 (410)
T ss_dssp HHHHHHHHHTCBCTTTCCBGGGCTTEEEEESCBSCCSCSTTCCHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 99999999986546666765577067666533665776676543320346677777775455408995576424566666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~D~~s~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~E~G~~~~~~~~~ 320 (410)
T d1uuqa_ 241 VNDMQVFIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSAWEKAQNYMRAHIDVAKQLNKPLVLEEFGLDRDMGSYA 320 (410)
T ss_dssp TTCHHHHHHHHCSTTCCSEEEEECTTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCGGGCCC
T ss_pred CCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 44321013440477655688612754446555433322222015666778888888876249976650255656788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~d~~~~~~ 400 (410)
T d1uuqa_ 321 MDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYGRTTRANYWWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAI 400 (410)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCEEETCCCCCTTCCCCTTSCCCSSCTTSCTTSSCEETTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
T ss_conf 76468999999999999999999828998999995416878888887778779987798985347348998899748899
Q ss_pred ---------E
Q ss_conf ---------9
Q 001846 864 ---------V 864 (1006)
Q Consensus 864 ---------V 864 (1006)
=
T Consensus 401 ~~~~~~~~~~ 410 (410)
T d1uuqa_ 401 MKEFNARFQP 410 (410)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHCCC
T ss_conf 9999974197
|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=30948.54 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~ll~~~Y~~~~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~~~~~~~~~~~~~~~~~~e~v~k 80 (410)
T d1s5ja1 1 EWLEEAQENKIYFLLQVDYDGKKGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRDPSFDHIETVSK 80 (410)
T ss_dssp CCSCBCCTTCEEEEEEEEEETTTTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHHHHTTCHHHHTCTTEEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 97655456875899986886329989999974269938999968896530899888216899998764236561799997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~ki~~~~p~~v~~~r~~~~~~~EadI~~~~RfliD~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1s5ja1 81 IDPYTWNKFKLTKIVVRDPLAVRRLRNDVPKAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKA 160 (410)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHTTSSSCEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHH
T ss_pred EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 71237853069999982899999999874654013668421179994886635899558743334555672011010133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~~~~~~~ 240 (410)
T d1s5ja1 161 FADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSV 240 (410)
T ss_dssp TTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCE
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 34443000000011354333689984199999997878889897953367549999998165878999981677766544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~v~~~~sE~eLL~~F~~~i~dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (410)
T d1s5ja1 241 KLDGISVERFNTEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKF 320 (410)
T ss_dssp EETTEEEEEESSHHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEECCE
T ss_conf 67980999978999999998754316666898435688689999999995996321531104741016855458976062
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~d~~~~~~~~~~l~sy~Ld~Va~~~Lg~~K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~~~~l~~~~~~s~i~ 400 (410)
T d1s5ja1 321 FFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRIS 400 (410)
T ss_dssp HTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62148998752358788987999999869695567776565897999886099999999998652588899999999985
Q ss_pred ---------E
Q ss_conf ---------9
Q 001846 864 ---------V 864 (1006)
Q Consensus 864 ---------V 864 (1006)
-
T Consensus 401 ~~plddv~r~ 410 (410)
T d1s5ja1 401 RLGIEELTRT 410 (410)
T ss_dssp CCCHHHHTTS
T ss_pred CCCHHHCCCC
T ss_conf 9798980479
|
| >d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Viral glycoprotein ectodomain-like superfamily: Viral glycoprotein ectodomain-like family: Spike glycoprotein-like domain: Spike glycoprotein species: Vesicular stomatitis indiana virus [TaxId: 11277]
Probab=100.00 E-value=0 Score=30879.74 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~iv~p~~~~~~W~~v~~~~l~CP~~~~~~~~~~~~~~~~~~~~p~~~t~~kv~G~~Chk~~w~ttC~~~wyg~~~it~ 80 (409)
T d2cmza1 1 KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ 80 (409)
T ss_dssp CEEEEEECSCCCCCEECCTTCCCCGGGGCTTTCCSCEEEEEEEEEECCCSCCEECEEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEEEEEEEEEEEEEEEECCEEEEE
T ss_conf 97689168888888237711244999745467786245558998103566336552798655899998746307558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~i~~~~pt~~~C~~ai~~~~~G~~~~p~fPp~~C~w~tv~t~e~~~i~i~ph~V~lDpY~~~~~D~~F~gGkCs~~~C~T 160 (409)
T d2cmza1 81 SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT 160 (409)
T ss_dssp EEEEECCCHHHHHHHHHHHHTTCCCCCCSCCCCCCTTSEEEEEEEEEEEEECCEEEETTTTEEECTTBGGGEECSSEEEB
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf 99974499899999998876587258989985515631211037999996455325377882746757999668970677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~h~~tiWi~d~~~~~~C~~~~~~~~i~~~~~~gk~~s~g~~~~g~~~~~~~~~~~~gACkl~fCG~~GIRl~~GeWv~i~ 240 (409)
T d2cmza1 161 VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 240 (409)
T ss_dssp SSSSCEEEESSCHHHHHGGGEEEEEEEEEESSCCGGGTTCSSCEEEETTEEEEECTTCEEEEETTEEEEECTTSBEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCEEEEE
T ss_conf 67861661577666501355301211684255600014653038983785545778831254348754687798589986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~p~C~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~Cl~tl~ki~~~~~iS~~dLSyL~p~~PG~G~AY~i~n 320 (409)
T d2cmza1 241 DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN 320 (409)
T ss_dssp CHHHHHHTTCCBCCTTCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTTSCCSSEEEEEEEEET
T ss_pred CCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 66641002577799998655036775166778999877879998999999974798775555420567999864379989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 gtL~~~~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~G~NG~~~~~~~~~~p~~~~~~~~~d~~l~~~~ 400 (409)
T d2cmza1 321 GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS 400 (409)
T ss_dssp TEEEEEEEEEEEEEESSSEESSSEEEETTSCCEEECCCCCEEETTEEECGGGCEEETTEEECCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEEECCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 94897668999998226653332564477774542244646868844466526985994895656711520034444440
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
-
T Consensus 401 ~~~~~~HPh 409 (409)
T d2cmza1 401 KAQVFEHPH 409 (409)
T ss_dssp CCEECCCCC
T ss_pred CCCCCCCCC
T ss_conf 267678999
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=100.00 E-value=0 Score=30877.25 Aligned_cols=1 Identities=0% Similarity=0.004 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~y~~~~~~~l~~l~pe~ah~~~~~~l~~~~~~~~~~~~~~~L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~ 80 (409)
T d1tv5a1 1 FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSI 80 (409)
T ss_dssp CCTTSTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTTTTTCSSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHH
T ss_conf 98778326789999999852599899999999999735777534677744466788764489687560668788999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~ 160 (409)
T d1tv5a1 81 LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKD 160 (409)
T ss_dssp HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTT
T ss_pred HHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 86688769951023035647897322345433321024677763589999987777654430566654300231454420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409)
T d1tv5a1 161 TVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN 240 (409)
T ss_dssp CSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 15788877999998850143100010265433442456889999999999999875301222221111111001111000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS 320 (409)
T d1tv5a1 241 NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS 320 (409)
T ss_dssp ----------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11222222110000000110123567865998589987024688999988606541011322225555334234677643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 G~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~~~ 400 (409)
T d1tv5a1 321 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN 400 (409)
T ss_dssp EHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 10178899999999999708996099989979999999999849978763067871192899999999999999829998
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
-
T Consensus 401 i~e~iG~~h 409 (409)
T d1tv5a1 401 LKEAIGRKH 409 (409)
T ss_dssp SGGGTTTTC
T ss_pred HHHHCCCCC
T ss_conf 999539889
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=30875.16 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~S~~ql~~~L~~~l~l~~ 80 (409)
T d1qtma2 1 EERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPA 80 (409)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 90789999999968999999999729284899999999999999999999999995991899999999999999739997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~grih~~~~~~gt~TGR~ss~~pnlq 160 (409)
T d1qtma2 81 IGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQ 160 (409)
T ss_dssp CCBCTTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSEECCEEESSCCSSSCCEEESSCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHH
T ss_conf 66656678755323368887421168999999889988888878778775038899163144556666665466650120
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~p~~~~~~~~~R~~f~a~~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~g~D~~~~~a~~~~~~~~~~v~~~~R~~a 240 (409)
T d1qtma2 161 NIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAA 240 (409)
T ss_dssp SCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCEEECHHHHHHH
T ss_conf 25410014454100555789968998530236324688860674411110157620101012212764223140676667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 K~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~ 320 (409)
T d1qtma2 241 KTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRE 320 (409)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSCHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 76410123576334566665442778999999998864235677788999887627233235653332100001254432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~N~~iQg~aAdi~k~a~~~~~~~l~~~~~~iv~~VHDEiv~ev~~~~a~~~~~~i~~~M~~~~~l~vPl~~e~~ 400 (409)
T d1qtma2 321 AAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVG 400 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEETTTHHHHHHHHHHHHHTSSCCSSCCCEEEE
T ss_pred HHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 20200121320399999999999999999886699899974413499987789999999999998603268997786621
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
=
T Consensus 401 ig~~W~e~k 409 (409)
T d1qtma2 401 IGEDWLSAK 409 (409)
T ss_dssp EESBHHHHC
T ss_pred ECCCHHHCC
T ss_conf 558967749
|
| >d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: LanC-like family: LanC-like domain: Nisin biosynthesis protein NisC species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30874.11 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~g 80 (409)
T d2g0da1 1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGS 80 (409)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-----CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95188999999985566530365569989983238779999999999886498789999999999999998607998863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 lf~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~~~~~ 160 (409)
T d2g0da1 81 LYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKI 160 (409)
T ss_dssp TTTSHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGHHHHH
T ss_pred EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 00787999999999986050356899999999999999999874402367766212226188999999833222407899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (409)
T d2g0da1 161 LIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYE 240 (409)
T ss_dssp HHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999997413554333454445552200036778776426550799999999998843788218999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
T d2g0da1 241 KFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDS 320 (409)
T ss_dssp HHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98642335688987676531123334456766655437884679999999998719889999999999999983548998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L 400 (409)
T d2g0da1 321 YMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALL 400 (409)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHHSCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 93568689999999999988488799999999999888743467899997244169999999998268999987112110
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
=
T Consensus 401 ~~~~~~~~~ 409 (409)
T d2g0da1 401 LFDDFLKGG 409 (409)
T ss_dssp CCTTTTTCC
T ss_pred CCCCCCCCC
T ss_conf 456234488
|
| >d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Mycoplasma arginini [TaxId: 2094]
Probab=100.00 E-value=0 Score=30873.84 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~v~SE~g~Lk~V~vhrPg~e~~~l~P~~~~~~lfd~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~~ll~e 80 (409)
T d1s9ra_ 1 SVFDSKFKGIHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAE 80 (409)
T ss_dssp CCSCTTCCSCBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf 93113778641577700131799769848987269311577514777799999999999999999789889983786876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g~~~~e~~~~~~~~~~~~plpn~~F~RD 160 (409)
T d1s9ra_ 81 TYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRD 160 (409)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHHHHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTS
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 55407999999999863101134454768888999986048889999988524515442555676334678755200057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~gvil~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~EGGD~l~~g~~~~~iG~s~RTn~~gie~L 240 (409)
T d1s9ra_ 161 PFASVGNGVTIHYMRYKVRQRETLFSRFVFSNHPKLINTPWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLL 240 (409)
T ss_dssp SEEEEBTEEEECCCSSHHHHTTHHHHHHHHHHCTTTTTCCEEECGGGCSCCCGGGEEECSSSEEEEEESSSCCHHHHHHH
T ss_pred CEEEECCCEEECCCCCHHHCCCHHHHHHHHHHCHHHCCCCEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
T ss_conf 43687486897899984665477999999984844349855972687664556747998996799997876798999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~L~~~~~~~~~~v~~~~~p~~~~~mHLDt~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (409)
T d1s9ra_ 241 AKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKDKFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQS 320 (409)
T ss_dssp HHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSSEEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99863447712689875047886552233560243279849982543564220012203676654101210338999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gievi~i~~~el~~~gGg~hCmT~ 400 (409)
T d1s9ra_ 321 IINKKPVLIPIAGEGASQMEIERETHFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSM 400 (409)
T ss_dssp HHSSCCEEEETTCTTCCHHHHHHHHHTTTTCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCHHHHTTSCCTTTTCE
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCEECCC
T ss_conf 74799808984688764566655540574049997799899858869999999978899999673785327998777870
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
.
T Consensus 401 pl~Re~v~~ 409 (409)
T d1s9ra_ 401 PLSRKDVKW 409 (409)
T ss_dssp EEEECCCCC
T ss_pred CCEECCCCC
T ss_conf 345279899
|
| >d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Formaldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=30873.20 Aligned_cols=1 Identities=0% Similarity=-1.955 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 D~e~~~~~~~~~~~~i~~~~~~~~~~~~GT~~~~~~~~~~g~lP~rNf~~g~~~~a~~isge~~~~~~~~~~~C~~Cpi~ 80 (409)
T d1b25a1 1 DKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMP 80 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTHHHHHHHGGGGHHHHHHHTTCSCBTTTTBSCCTTGGGGSHHHHHHHEEEEECCTTCSSC
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 98999999999999987194176788368599999998759968177878878873445899998775127888999678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 C~~~~~~~~g~~~gpEYEt~~~~Gs~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~Gd~e~~ 160 (409)
T d1b25a1 81 CGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGA 160 (409)
T ss_dssp CEEEEECTTSCEEEECHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCTTCHHHH
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 88358728987078536479887660289999999999999998687456450599999999977999866667886999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~ll~~Ia~r~GeiG~~La~G~~~aae~~G~~~~a~~vKG~e~p~~dpR~~~g~~l~yats~rGa~H~~~~~~~~~~~~~ 240 (409)
T d1b25a1 161 KQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTA 240 (409)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCHHHHHHHHTCGGGCCEETTEECCSCCCTTCHHHHHHHHHCTTSSCSTTCCCHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
T ss_conf 99999998667857899973399999994982321020777666527763024666551246787045533220331357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dslg~C~F~~~~~~~~~e~~~~~l~avTG~~~t~eel~~~GeRi~ 320 (409)
T d1b25a1 241 PIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVY 320 (409)
T ss_dssp TTC--------CCCCCCTHHHHHHHHHHHHHTTHHHHHTCCSHHHHHHCCCTTHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 41110123312345678078999999999999999860404552214577899999999984388999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~L~R~fN~r~G~~~~~~~dD~lP~r~~~ep~~~Gp~~G~~~d~~~~e~~l~~YY~~rGWde~G~Pt~e~L~~LgL~~v~~ 400 (409)
T d1b25a1 321 SLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIP 400 (409)
T ss_dssp HHHHHHHHHHTTTCCCGGGGCCCTHHHHCCCSSSTTTTCCCCHHHHHHHHHHHHHHHTBCTTSCBCHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHH
T ss_conf 99999998606679983427797154118887787578868999999999999997399988846999999879966899
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
-
T Consensus 401 ~l~~~~~~~ 409 (409)
T d1b25a1 401 ELEKVTNLE 409 (409)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHCCC
T ss_conf 999986169
|
| >d1dkla_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30872.78 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~p~~~L~~V~il~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~G~LT~~G~~q~~~lG~~lr~~Y~~~~~~~~~~~~~~~ 80 (409)
T d1dkla_ 1 SEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSG 80 (409)
T ss_dssp CCSCEEEEEEEEEEECCCBCCCCCCHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTT
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99888898999997188899999866557688433557999930526999999999999999998774367887778712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~i~vrSt~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1dkla_ 81 QVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQT 160 (409)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHHSTTCCCCEECCSCTTSCCGGGCTTTTTSSCCCHHHHHHHHHHHTTSSHHHHHHTTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 06987279729999999999852788676655445556667566777577667536777789987745647778899889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~ 240 (409)
T d1dkla_ 161 AFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSH 240 (409)
T ss_dssp HHHHHHHHHTGGGSHHHHTC-----CCCHHHHSCCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCSSGGGGTCCSHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
T ss_conf 99999999721121037877510037889999899988640477767726667659999999998599972110357799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~k~~l~s~HD~ti~~ll~aLgl~~~~~ 320 (409)
T d1dkla_ 241 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLP 320 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHSCCCCEECGGGCEESCSEEEEEECHHHHHHHHHHHTCCCCBT
T ss_pred HHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998650005887899873668999999999876404555678888638999568414999999819853456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~p~as~~~~El~~~~~~~~~~vrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~~~C~l~~F~~~~~ 400 (409)
T d1dkla_ 321 GQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVN 400 (409)
T ss_dssp TBSCSSCTTCEEEEEEEEETTTTEEEEEEEEEECCHHHHHTTCCCCSSSCCEEEECCCTTCCCBCTTSCEEHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66899997663899999846999725999995376201245665201025775046479998889999368999999999
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
+
T Consensus 401 ~~~~p~c~~ 409 (409)
T d1dkla_ 401 EARIPACSL 409 (409)
T ss_dssp HHSCGGGCC
T ss_pred HHHHHHCCC
T ss_conf 775021279
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=0 Score=30869.51 Aligned_cols=1 Identities=0% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~ 80 (409)
T d1wzaa2 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGT 80 (409)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCC
T ss_pred CCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98761799996412137999987489999975533210022277616866799798887989888684567875834599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1wzaa2 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY 160 (409)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999866988998213344445673123331146553345322356444567654579853322346664466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (409)
T d1wzaa2 161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISET 240 (409)
T ss_dssp SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77887620325689999999999999982987212253532166032020068999999740037880799986037521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~r~~~~~~~~~~~~~~ 320 (409)
T d1wzaa2 241 VAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARV 320 (409)
T ss_dssp HGGGGTTTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 13444202232012468999988774167521678877777766543002456556312455567310002786678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~l 400 (409)
T d1wzaa2 321 AASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHF 400 (409)
T ss_dssp HHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCHHHHTTCTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999838998799558653766899986546788777788888776775555655468998863748999999999999
Q ss_pred --------E
Q ss_conf --------9
Q 001846 864 --------V 864 (1006)
Q Consensus 864 --------V 864 (1006)
-
T Consensus 401 Rk~~pal~s 409 (409)
T d1wzaa2 401 RNENPVFYT 409 (409)
T ss_dssp HHHCTHHHH
T ss_pred HHHCCHHCC
T ss_conf 960813039
|
| >d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30800.72 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 em~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~a~~~~L~e~~g~~~~~v 80 (408)
T d1f1oa_ 1 EMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWV 80 (408)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 94787790799999999999999999877999999999999847677999998874538858999999998738646341
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 H~G~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL 160 (408)
T d1f1oa_ 81 HYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERF 160 (408)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67887899998999999998488888899999999999999828860146675177777408899999999999879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~ 240 (408)
T d1f1oa_ 161 KQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSET 240 (408)
T ss_pred HHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99987650124460431346788558999999846767872278887788999987999999999987789998871344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~ 320 (408)
T d1f1oa_ 241 REVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFS 320 (408)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 61440366789875200035564079999987601111378998726431200304567776214009999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~~~~i~~~Ls~eel 400 (408)
T d1f1oa_ 321 NIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEAEEKITSRLSPEKI 400 (408)
T ss_pred HHHHCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHH
T ss_conf 87637865799999999730472689999999998299989999999999999999798899998706786668999999
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
-
T Consensus 401 ~~~lDp~~ 408 (408)
T d1f1oa_ 401 ADCFDYNY 408 (408)
T ss_pred HHHCCCCC
T ss_conf 98659998
|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Family 10 polysaccharide lyase family: Family 10 polysaccharide lyase domain: Polygalacturonic acid lyase (pectate lyase) species: Azospirillum irakense [TaxId: 34011]
Probab=100.00 E-value=0 Score=30800.77 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~a~~~t~ar~~~~p~~~~aAw~~y~a~s~~~~~a~~~~~~a~~~~g~~~p~~p~~~~~~~~~~l~~~~~wy~s 80 (408)
T d1r76a_ 1 AVIGMNEAASALTPSRVSSLPDTQRAAWQEYLARSEAQLSRDKASLAAELAPGQPLPPPPAEGKGADTMPLDKPAAWYTS 80 (408)
T ss_dssp CCCEECCCCCCCCHHHHSSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCSCCGGGSCSSSCGGGGGS
T ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 95554541011687776369878888986436665556766776666653248878999986643033671467444577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~ 160 (408)
T d1r76a_ 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79999999999853447998776653200110102232210134455300144555542246788686248999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r 240 (408)
T d1r76a_ 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99973763214699999999999997317799964437887552343112755899799999999973465344787889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av 320 (408)
T d1r76a_ 241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999987610488867486525835567344336677264003189999999717777755999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~lwaRfyel~tn~P~f~~Rd~~~~~~~~ei~~err~gy~w~~~~~~~~~~~ 400 (408)
T d1r76a_ 321 AWLNTSVIRDRAWVKSDQGYQLVTEQGAKPLWSRFYSLDGNKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKALSA 400 (408)
T ss_dssp HHHHHSCCCC---------------CCSSCCEESEECSSSCCBCEECTTSEEESCGGGSCHHHHSSSCCEESTTHHHHHH
T ss_pred HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCEEEECCCCCEECCHHHCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 99986646785355348884242089998533256775899624657998653477662097628702427776999998
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
-
T Consensus 401 y~~w~~~~ 408 (408)
T d1r76a_ 401 FTKWEKRS 408 (408)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHCC
T ss_conf 89987449
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30796.77 Aligned_cols=1 Identities=100% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~ 80 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 80 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
T ss_conf 98699999884899999999787899988999988999999868899999999885998877999899999999869977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~ 160 (408)
T d1n11a_ 81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160 (408)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99999874100123211122024555430332222222211001001456464289999875989999999976998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~ 240 (408)
T d1n11a_ 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 240 (408)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78767409999998599999999986588400457789971024320210455555432001221247789999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g 320 (408)
T d1n11a_ 241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320 (408)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCC
T ss_conf 08676754420022111112478997334543028489999999779965621023445302210058621355301333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~ 400 (408)
T d1n11a_ 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400 (408)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 32234689999999999986889999999987889988799998999999983999999999998736564560003668
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
=
T Consensus 401 ~~~~~~~~ 408 (408)
T d1n11a_ 401 SFPETVDE 408 (408)
T ss_dssp CCCCCCCC
T ss_pred CCCHHCCC
T ss_conf 76410149
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30795.10 Aligned_cols=1 Identities=0% Similarity=-0.727 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~rGvNlGgWlv~E~wi~p~~f~~~~~~~~~~~~~~~de~~~~~~~G~~~~~~~~~~h~~~~ite~D~~ 80 (408)
T d1h4pa_ 1 YYDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFA 80 (408)
T ss_dssp CCCTTSCTTSSCEEEEECTTSSSCCTTTSHHHHHTTCCCTTCCTTCCSSHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 96666787798325886515540466667315554256666555542209999998687889999999885328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~i~~~G~N~VRiPi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH~~pG~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T d1h4pa_ 81 NIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSN 160 (408)
T ss_dssp HHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSHHH
T ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99977998799854499934778887758158999999999999889989998378998776778877656645578168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~ia~r~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~~iR~~~~~~~~iv~~d~~~~~~~w~~~ 240 (408)
T d1h4pa_ 161 LAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDF 240 (408)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTTCCTTGGGGS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 99999999999999631345664234412567665666557789999999999998634668569980687770145554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~~~~~~p~~vGEws~a~td~~~~~n~~g~~~~~~ge~~ 320 (408)
T d1h4pa_ 241 MTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTDCIKWLNSVGFGARYDGSWV 320 (408)
T ss_dssp SCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHHTTCSSEEEEEEECSCSSSCSTTTTCTTCCCTTBTCCC
T ss_pred CCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCC
T ss_conf 26677786367610223541377556775543311433344543156885243112331104441256554430104413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~~~GW~fWt~K~e~~~~W~~~~~~~~g~iP~~~~~~~~~ 400 (408)
T d1h4pa_ 321 NGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEMRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYP 400 (408)
T ss_dssp BTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTTTTEEEESCSCCSSCSTTCHHHHHHTTSSCSSTTCCSST
T ss_pred CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 67767655565446677001778899999999999999984589777852137999878889999787808896124687
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
-
T Consensus 401 ~~cg~~~~ 408 (408)
T d1h4pa_ 401 NQCGTISN 408 (408)
T ss_dssp TGGGSCCC
T ss_pred CCCCCCCC
T ss_conf 75567889
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=0 Score=30795.01 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~a~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg 80 (408)
T d1t3ia_ 1 PSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 80 (408)
T ss_dssp CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96278998758256666589986983185115799999999999998668987731519999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf 89821377505307898888764100226899889850354411211344433026825765420123320077764224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~ 240 (408)
T d1t3ia_ 161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 240 (408)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 89966999965554443358089876565214730453130104643224334678648861432357887411121033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~ 320 (408)
T d1t3ia_ 241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ 320 (408)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 45308965069854344455555557733543478578999999999999999708799999999877677665225764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L 400 (408)
T d1t3ia_ 321 LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSL 400 (408)
T ss_dssp EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 23468884446754189999589899999999966996996574225587886069960999799999999999999999
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
-
T Consensus 401 ~~~~~~f~ 408 (408)
T d1t3ia_ 401 QATIRFFS 408 (408)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHC
T ss_conf 99999759
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30799.89 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~~~~A~~l~~dL~~~l~~~ 80 (408)
T d1c4oa1 1 TFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN 80 (408)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 96214899998779999999999866997379856888789999999999859999999189999999999999864766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~G 160 (408)
T d1c4oa1 81 AVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERG 160 (408)
T ss_dssp EEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC----
T ss_pred CEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEECC
T ss_conf 45567753422575456845554444421034677764446555320467659995112321678818876114885179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~l~~~L~~~gY~r~~~V~~~GefsvRG~IlDIfp~~~~~P~RIeffgDeIdsIr~Fd~~tQrs~~~~~~~~i~P 240 (408)
T d1c4oa1 161 KPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFP 240 (408)
T ss_dssp --------------------------------------------------------------------------CCCBCC
T ss_pred CEEEHHHHHHHHHHHHCEECCEEECCCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
T ss_conf 89508999999997522214305336605730671276002457637899946733268997278896567655456522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~Gie~yl~~f~~~~~~e~~~tL~ 320 (408)
T d1c4oa1 241 ATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLL 320 (408)
T ss_dssp SCSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTSCCCCGG
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH
T ss_conf 41110135578888876566899999998737416777799999988877875188765777799865778899852466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 DYlp~~~lv~~De~~~~~~~~~~~~~e~~e~~~~lle~g~~lP~~~d~~~L~~ee~~~~~~q~i~~S~~p~~~e~~~~~~ 400 (408)
T d1c4oa1 321 DYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR 400 (408)
T ss_dssp GGSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHHCSE
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCCC
T ss_conf 51687508999582877999999998899999868757867885434798899999985598899808998422306885
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
=
T Consensus 401 ive~~~Rp 408 (408)
T d1c4oa1 401 VVEQIIRP 408 (408)
T ss_dssp EEEECSCT
T ss_pred EEEEEECC
T ss_conf 47996088
|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Probab=100.00 E-value=0 Score=30798.36 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~e~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S~~ql~~~Lf~~L~l~~~~ 80 (408)
T d2hhva2 1 EQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLK 80 (408)
T ss_dssp TCHHHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 97689999988899999999984969789999999999999999999999999699679999999999999855999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~r~~~k~~~~~~~~~~~~~~~~~gRih~~~~~~gt~TGR~s~~~Pnlqn~p~ 160 (408)
T d2hhva2 81 KTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPI 160 (408)
T ss_dssp BCSSSBCCCHHHHHHHGGGCHHHHHHHHHHHHHHHHHTTTHHHHHHSCTTTCEECCEEESSCCSSSCCEEESSCTTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEECCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 58788655335677750112579999999999888886533324305089985787200357654445557632146777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~r~~~~~~~g~~lv~~DysqiElRvlA~ls~D~~l~~~~~~g~D~h~~~a~~~~~~~~~~~~~~~R~~aK~~ 240 (408)
T d2hhva2 161 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV 240 (408)
T ss_dssp SSHHHHGGGGGEECSSTTEEEEEEEESSHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf 64335023312113047845887220215199999994888899987744215665455404777888070677889987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~~~~~~grrr~~p~~~~~~~~~r~~~~ 320 (408)
T d2hhva2 241 NFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 320 (408)
T ss_dssp HHHHHHCCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSSHHHHHHHH
T ss_pred HHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHH
T ss_conf 61533245115546101222788999999998640116255789999999828875467984158865566676767888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~~~~~~lv~~VHDEiv~ev~~~~~~~~~~~~~~~M~~~~~l~vPl~~d~~i 400 (408)
T d2hhva2 321 RMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHY 400 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTSSCCSSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 87760011489999999999999999984489978999763105899778999999999999995476788807865044
Q ss_pred -------E
Q ss_conf -------9
Q 001846 864 -------V 864 (1006)
Q Consensus 864 -------V 864 (1006)
=
T Consensus 401 G~~W~e~k 408 (408)
T d2hhva2 401 GSTWYDAK 408 (408)
T ss_dssp ESSTTTCC
T ss_pred CCCHHHCC
T ss_conf 78967759
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30728.93 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~p~~~~~p~p~~rp~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vrvld~~g~~~~~~~~~l~~e~l~~~y 80 (407)
T d1qs0a_ 1 NEYAPLRLHVPEPTGRPGCQTDFSYLRLNDAGQARKPPVDVDAADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGM 80 (407)
T ss_dssp CCSCCCCCCCCCCSCCTTSCCCGGGSCCCCTTCSCCCCTTCCGGGGHHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99898545799999999988885445568876679995568911244245670899899998998778998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 r~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~ 160 (407)
T d1qs0a_ 81 RAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPL 160 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999669730668998849999999986797798982545799999987619999999862457877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eN 240 (407)
T d1qs0a_ 161 KGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVN 240 (407)
T ss_dssp TTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 78875443355323200025653346623356677776516760101245655433201888999873057626999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 N~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~Y 320 (407)
T d1qs0a_ 241 NQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY 320 (407)
T ss_dssp CSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred ECCCCCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 02301364111200100688888861865278625439999999998889985389746997741018988765554345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 R~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l 400 (407)
T d1qs0a_ 321 RPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHL 400 (407)
T ss_dssp SCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHH
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 89999998883897999999999879999999999999999999999999987221036899699999845225999889
Q ss_pred ------E
Q ss_conf ------9
Q 001846 864 ------V 864 (1006)
Q Consensus 864 ------V 864 (1006)
+
T Consensus 401 ~eQ~~el 407 (407)
T d1qs0a_ 401 RRQRQEL 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9999739
|
| >d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=30718.38 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~g~i~~~~~g~p~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~a~g~~PDi~~~~~~~~~~~~~~g 80 (407)
T d1eu8a_ 1 IEEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASG 80 (407)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC
T ss_conf 97426999978976699999999999998886918999973684599999999999828999879998948899999879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~yNkdl~~~~G~~~p~~T~de~~~~~~~l~~~~~ 160 (407)
T d1eu8a_ 81 WLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGER 160 (407)
T ss_dssp CBCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHCCHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 93338576553113255404889987513454230276301234554161255542157988899999999999873045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (407)
T d1eu8a_ 161 ETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEP 240 (407)
T ss_dssp TTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 76775221234555544302446789984488611024677521469999999999999999705657632000001577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fl~~l~s~e~ 320 (407)
T d1eu8a_ 241 VRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSV 320 (407)
T ss_dssp HHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998568745742572888765320145455534411125678654311304202676787549999999874002789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~eal~~~~~~ 400 (407)
T d1eu8a_ 321 QKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKE 400 (407)
T ss_dssp HHHHHHHTCCCBSBTTGGGSHHHHHHCTHHHHTHHHHHTCBCCCCCTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999851888662777739875611967999999997285278888789999999999999985999999999999999
Q ss_pred ------E
Q ss_conf ------9
Q 001846 864 ------V 864 (1006)
Q Consensus 864 ------V 864 (1006)
=
T Consensus 401 ~~~~l~~ 407 (407)
T d1eu8a_ 401 AEELVKQ 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999576
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=0 Score=30716.12 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~ 80 (407)
T d1qhoa4 1 SSSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (407)
T ss_dssp CTTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CCCHHHCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 97132057779996355506799877766555455577655667657848999998799999769988996965207765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (407)
T d1qhoa4 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF 160 (407)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSS
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67889988774012224777778998899999999866302113331201455677622222223676556676555555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~f~~~ 240 (407)
T d1qhoa4 161 DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKS 240 (407)
T ss_dssp SCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 65555422246777786645342234456776655700332025678999876777865315643101101251467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~i~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (407)
T d1qhoa4 241 LADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKEN 320 (407)
T ss_dssp HHHHHHHHCCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999742685345565588735667777631135665412102577888887640220146788999875201345202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~f~~nHD~~R~~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~~~~~~L~~lR~ 400 (407)
T d1qhoa4 321 LITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRR 400 (407)
T ss_dssp CEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHHHHHHHHHHHHH
T ss_pred HCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 12000368854401124899999999999997279868863874397899895410137866688599999999999985
Q ss_pred ------E
Q ss_conf ------9
Q 001846 864 ------V 864 (1006)
Q Consensus 864 ------V 864 (1006)
-
T Consensus 401 ~~paLr~ 407 (407)
T d1qhoa4 401 NNAAIQY 407 (407)
T ss_dssp HCHHHHH
T ss_pred HCHHHCC
T ss_conf 0984474
|
| >d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=0 Score=30646.28 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~~d~~~~~~di~~l~~~~~~~wpaD~g~~gP~lVRlAWHs 80 (406)
T d1itka1 1 KRPKSNQDWWPSKLNLEILDQNARDVGPVEDDFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHS 80 (406)
T ss_dssp CCCCCHHHHCTTSCCTHHHHTTSCCCSSCCTTCCHHHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99986566586444773245687667989988678999876449999999999974433357544466313676555553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 AgTYR~sD~RGGanGariRfaPe~sW~~N~~LdkAr~lLepIK~kyg~~IS~ADLivLAG~vAiE~~ggp~i~f~~GR~D 160 (406)
T d1itka1 81 AGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGRED 160 (406)
T ss_dssp HTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCBCCCC
T ss_pred HCCEECCCCCCCCCCCEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 10011257888998762575666266777422999999999998627355443042000155564426863224557765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~~~~d~~~g~~~e~~~d~~~~~~~~l~~pl~a~~~~liyv~Peg~~g~~d~~~~a~~lrd~f~rMgl~d~E~VALigG 240 (406)
T d1itka1 161 AFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAG 240 (406)
T ss_dssp CSSCCTTCCCCSCSSTTCCCSCSSTTCCCTTCSCSSTTCSSSCTTCGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 55655554557655656666677655555430013235555688665677884115899999999824881999998750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~htlG~~hg~~~~~~~~g~~Pe~~~~~~~g~g~~~~~~~g~g~~~~~sG~~G~wT~~p~~~~N~yF~~Ll~~~w~~~~s~ 320 (406)
T d1itka1 241 GHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYEWEPEKGP 320 (406)
T ss_dssp HTTSCEECBSSCHHHHBCCCGGGSCGGGTTCCCCBCC-------CBSSSCCEESSSSTTSCSSHHHHHHHHSCEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf 24246335788743357878655544346764457888775765545775544455434345612100135565410036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~g~~~~~~~~~~~~~~~pda~~~~~~~~~~ml~tDlaL~~Dp~~R~iaE~YA~d~e~F~~DFa~Aw~KL~~~D~gp~~ry 400 (406)
T d1itka1 321 GGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYREVMETFQENPMEFGMNFAKAWYKLTHRDMGPPERF 400 (406)
T ss_dssp TSCEEEEESSSTTTTCEECSSCTTCEECCCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77437526776544577756566775577503667876009878999999960999999999999999972678983345
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
=
T Consensus 401 ~gp~~p 406 (406)
T d1itka1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Burkholderia pseudomallei [TaxId: 28450]
Probab=100.00 E-value=0 Score=30646.27 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~wp~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~lD~~alk~di~~l~~~s~d~wpaD~G~ygp~lVRlAWHsA 80 (406)
T d1mwva1 1 NGTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSA 80 (406)
T ss_dssp CCCCHHHHCTTSCCGGGGSCSCGGGCCSCTTCCHHHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99886666831138741356876569898887789998750599999999999745321475534662168998888763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gTYR~~D~RGGanGg~iRfaPe~sW~~N~~Ldkar~lLepIK~ky~~~IS~ADLivLAG~vAiE~~Gg~~i~f~~GR~d~ 160 (406)
T d1mwva1 81 GTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADT 160 (406)
T ss_dssp TTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred CCCCCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf 24104579889987615775443578754679999999999997477754233256620788987369813777676664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Plaa~~~gliyvnpeg~~g~pd~~~~a~~lrd~f~rMglnd~E~vAL 240 (406)
T d1mwva1 161 WEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVAL 240 (406)
T ss_dssp SSCCCCCCCSCSSTTCCTTSTTCSEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 33223556644443454456544566753334764444456666687645688970235899999987606870889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~G~HtlG~~hg~~~~~~~g~~pe~~~~~~~g~gw~~~~~~g~~~~~~~sg~eG~wT~~P~~~dN~yF~~Ll~~~we~~~ 320 (406)
T d1mwva1 241 IAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTK 320 (406)
T ss_dssp HHHHTTSCBCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCBCCSCTTSCCSHHHHHHHHSCEEEEE
T ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEC
T ss_conf 86432211135788510047754567510025666666554577766778873676799761116888656447645520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 s~~g~~q~~~~~~~~~~pda~~~s~~~~~~ml~tDlal~~Dp~~R~iaE~YA~d~e~F~~dFa~AW~KLm~~Dmgp~~~y 400 (406)
T d1mwva1 321 SPAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARY 400 (406)
T ss_dssp CTTCCEEEEETTCCSCEECSSCTTCEECCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 45655245645755577766588777476402443333029888999999962999999999999999974688980202
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
=
T Consensus 401 ~g~~~p 406 (406)
T d1mwva1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 699999
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30645.94 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (406)
T d1u2za_ 1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDF 80 (406)
T ss_dssp CCBSSCTTSCEEECCSCCBCHHHHHHCCCCCCCCCCGGGCCC------------------EEEEECSSCTTCEEEEECCS
T ss_pred CCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
T ss_conf 97532587743465553020665310553379877772000477771443068876898605887324666103788850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~p~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~~~l~~~~ 160 (406)
T d1u2za_ 81 KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETID 160 (406)
T ss_dssp SSCCSSSCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56524569899999999999986488489999999999999998742799999999999999999866615988876267
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~ 240 (406)
T d1u2za_ 161 KIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC 240 (406)
T ss_dssp EEEHHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999998886446036886776266789977403478899999999838999998996789875999999997699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~ 320 (406)
T d1u2za_ 241 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320 (406)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 76999848999999999999987555555303566520334404221654224545643999733167367999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 r~LKPGGrIVs~~~~~~~~~~it~r~~~~~~~il~v~~~~~~~~sVSWt~~~v~yyl~tv~~~i~~~~f~~~~~~R~~r~ 400 (406)
T d1u2za_ 321 QTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRG 400 (406)
T ss_dssp TTCCTTCEEEESSCSSCTTCCCCSSSTTCGGGGEEEEEEECCTTCBTTBSSCCEEEEEEECSSCCGGGSCCC------C-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 72699828999114678740145520353000033132145336633466987653739998888721462113553347
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
-
T Consensus 401 ~P~kyt 406 (406)
T d1u2za_ 401 TPVKYT 406 (406)
T ss_dssp --CCBC
T ss_pred CCCCCC
T ss_conf 888889
|
| >d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Synechococcus sp. pcc 7942 [TaxId: 1140]
Probab=100.00 E-value=0 Score=30645.51 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~wp~~~~~~~l~q~~~~~~p~~~~~~y~~~~~~ld~a~k~Dl~~l~~~s~~~wpaD~G~ygP~lVRlAWhsAgTYR 80 (406)
T d1ub2a1 1 STAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYR 80 (406)
T ss_dssp CTTSSCTTSCCGGGGSCSCTTTCCSCTTCCHHHHHTTSCSTTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 97555887768521015887679899997889999999999999999997455234755457621377865554014321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~sD~RGGanGgriRfaP~~sW~~N~~LdkAr~lL~pIK~ky~~~IS~ADLivLAG~vAiE~agg~ti~f~~GR~Da~~~~ 160 (406)
T d1ub2a1 81 IADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGREDIWHPE 160 (406)
T ss_dssp TTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCSSCC
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 67898899877446822304566318899999998887642876531137776129999873498335677766666776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~dv~~g~~~e~l~~~~~~~~~~~~~~~l~~pl~a~~~~liyvnP~g~~g~pd~~~~a~~ir~~f~rM~mnd~E~vAL~aG 240 (406)
T d1ub2a1 161 KDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTAG 240 (406)
T ss_dssp TTCCCCSCSSSSCCSSSTTCSEETTTEECTTCCSSSTTCSSCCTTSBTTBCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 55455554455788767544467754322465420157311177534678974555788655677753788998642153
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~ht~Gk~hg~~~~~~~g~~p~g~~~e~~g~~~~n~~~~g~g~~t~tSg~eg~wt~~p~~~dn~yF~~ll~~~~W~~~ks~ 320 (406)
T d1ub2a1 241 GHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKNP 320 (406)
T ss_dssp HHTSCCBCBCSCSTTBCCCGGGSCGGGTTCCSCBCSSCCSGGGCBSSSCCBBSSSCTTSCSSTTTTTTTSSSCEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
T ss_conf 31002136777501237655565410067766777773646666688888777656443467412333205640102453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~ga~q~~~~~~~~~~~~~~~~d~s~~~~~~mt~tDLal~~Dp~~R~iaE~Ya~d~e~F~~dFa~AW~KL~~~Dmgp~~~~ 400 (406)
T d1ub2a1 321 AGAWQWEPINPREEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHRDMGPKARY 400 (406)
T ss_dssp TSCEEEEESSCCGGGSCBCSSCTTSBCCBCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 30114455675323477755477777577503567763108878999999971999999999999999971677976531
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
=
T Consensus 401 ~g~~~p 406 (406)
T d1ub2a1 401 IGPDVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase T species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30645.30 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~~~~a~~e~l~~~p~ 80 (406)
T d2ayia1 1 AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPA 80 (406)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCHHHHHHCCH
T ss_conf 96799999999999971268999989997166569999999999998699738996067699999996399988743624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~a~i~I~~~np~~l~~vdp~ki~~~~ka~~~~~~~~~~~~~~~~~~W~i~~~P~~~~A~~~~~~l~~ 160 (406)
T d2ayia1 81 WLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE 160 (406)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCBCBEECCCTTTHHHHCCCSCH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCH
T ss_conf 46889999997189289961698520126996899999998899879999998536566399975782177661789767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~e~~~~l~d~if~~~~ld~~dp~~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~GTDL~~~i~~~~~w~~~~~~~~~g~~~ 240 (406)
T d2ayia1 161 EEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLC 240 (406)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECCTTBCCEESSCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999976346651079999999999999999985165148996389369999945884015887642278767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~NlP~GEvftaP~e~svnG~i~~d~~~~~~g~l~~~i~l~f~~G~vv~~~~~~~~~~l~~~~~~d~~a~~lgE~~ig~n 320 (406)
T d2ayia1 241 NPNLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPA 320 (406)
T ss_dssp CSBSSCCCEEECCCTTCEEEEEECSSCEEETTEEEBSCEEEEETTEEEEEECSBCHHHHHHHTTSSSGGGSEEEEECCCT
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 68899832585020484211998045454433303473799948879997557649999987624867636788876047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~n~L~DE~gt~Hia~G~~Y~~~~~g~~~~~~~~~~g~n~s~~H~D~~~~~~~~~~dgv~~dG~~~~i~~ 400 (406)
T d2ayia1 321 DNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGRPSGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMR 400 (406)
T ss_dssp TSHHHHHTCCCCCHHHHHTTSCEEEEECCCGGGBCC---CCSHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEE
T ss_conf 88540345111330587478604766876411134788756763079806644786713887178999984891889988
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
|
T Consensus 401 ~G~f~i 406 (406)
T d2ayia1 401 RGRWVV 406 (406)
T ss_dssp TTEECC
T ss_pred CCEEEC
T ss_conf 989969
|
| >d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Phosphonoacetate hydrolase domain: Phosphonoacetate hydrolase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30644.50 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~vi~I~iD~l~~~~l~~~~~~~~TPnid~La~~G~~f~~~~~~~~~c~PsrasllTG~yp~~hG 80 (406)
T d1ei6a_ 1 TNLISVNSRSYRLSSAPTIVICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHG 80 (406)
T ss_dssp CCEEEETTEEEECCSSCEEEEECTTCCHHHHHHHHHTTSCHHHHHGGGTSEEEEEECCSSCCHHHHHHHHHHTSCHHHHC
T ss_pred CCEEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCC
T ss_conf 96484786104678998899997899978874005557991899999689348322049971589999999678988879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T d1ei6a_ 81 ICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENIL 160 (406)
T ss_dssp CCSSEEEETTTTEEEECCSGGGCCSCCHHHHHHHTTCCEEEEESSHHHHHHHTTTCCSEEEESTTCSSCCHHHHSCCCHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57775446554410100332123456544311123465302114565645555430321456567786523444543221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~i~~l~~~~~~~~~~~d 240 (406)
T d1ei6a_ 161 ARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQGAIVAITAD 240 (406)
T ss_dssp HHHTCCCCCSSSTHHHHHHHHHHHHHHHTTCCSEEEEECCCHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 10233222123332102444432220247884201123433334456899889999999999999999867966999934
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d1ei6a_ 241 HGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLT 320 (406)
T ss_dssp CCCEECBCTTSCBCEEEHHHHHHHHHCTTSEEEECTTSCTTCCBGGGCBSEEEEEECTTSCHHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 54345675223320232144201110110000245422210000122320234313327899999998752365223304
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~~igdii~~sd~g~~lg~~~~~~~~s~~~~~~~~hGg~~e~~VPlIi~~P~~~~~~~~~i~~~Di~d~ 400 (406)
T d1ei6a_ 321 RSQACQRFELPEDRIGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLDSPGRLRNFDIIDL 400 (406)
T ss_dssp HHHHHHHHTCCGGGSCSEEEEECTTCEEESCTTTCBGGGCCSCCEECCSGGGCEEEEEESSCBCCCC--CCCBGGGHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECHHHH
T ss_conf 98999973999787466999956996877455445433467767565651147308799558656777884325061887
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
-
T Consensus 401 ~~~~~~ 406 (406)
T d1ei6a_ 401 ALNHLA 406 (406)
T ss_dssp HHHCBC
T ss_pred HHHHCC
T ss_conf 763039
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=0 Score=30637.61 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~ 80 (406)
T d3bmva4 1 ASDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPV 80 (406)
T ss_dssp CCTTSTTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCE
T ss_pred CCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCC
T ss_conf 98766678888753708996123306899777878876577777657667858999987448888987597789979753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~ 160 (406)
T d3bmva4 81 ENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYD 160 (406)
T ss_dssp EECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEE
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCC
T ss_conf 56544567777789712127665235456844461899999999997436431365201566566522012034675356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~~giDGfR~D~~~~~~~~~~ 240 (406)
T d3bmva4 161 NGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQ 240 (406)
T ss_dssp TTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 87411466545566434556764445666311245554210226689999999887777530777532245444632568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d3bmva4 241 KNFMDSILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFIND 320 (406)
T ss_dssp HHHHHHHHHHSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99988888753212334333455100022110247776500122023788876405740267789987620013443344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~fl~nHD~~R~~~~~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~~~~~~~~~~~~Li~lRk~ 400 (406)
T d3bmva4 321 MVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKS 400 (406)
T ss_dssp CEECSCCSSSCCSCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHHHTTHHHH
T ss_pred HCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 32566677646660688799999999999971797777657653868998824440489877896999999999999863
Q ss_pred -----E
Q ss_conf -----9
Q 001846 864 -----V 864 (1006)
Q Consensus 864 -----V 864 (1006)
-
T Consensus 401 ~paLry 406 (406)
T d3bmva4 401 NPAIAY 406 (406)
T ss_dssp CHHHHH
T ss_pred CHHHCC
T ss_conf 944159
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=30573.74 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~ 80 (405)
T d1kl1a_ 1 MKYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQ 80 (405)
T ss_dssp CCHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 93155549999999999999997691586067767899999856752475768899964607762299999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~ 160 (405)
T d1kl1a_ 81 LFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR 160 (405)
T ss_dssp HHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred HHCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf 83999414414676588999999844899878873035566445676223364588877732313025313999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~ 240 (405)
T d1kl1a_ 161 LHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE 240 (405)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECH
T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECC
T ss_conf 62765377523146665586999998764198786035667665443126984652110323355334677773587500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCC
T ss_conf 35777776508653468415678899999998738388999999999888999998648943435887664563243446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~~~~~~~~~ir~~V 400 (405)
T d1kl1a_ 321 QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQRV 400 (405)
T ss_dssp TCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77499999999980959767869899999998872265688998589988999999999999996589679999999999
Q ss_pred ----E
Q ss_conf ----9
Q 001846 864 ----V 864 (1006)
Q Consensus 864 ----V 864 (1006)
=
T Consensus 401 ~~L~~ 405 (405)
T d1kl1a_ 401 AALTD 405 (405)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99639
|
| >d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Proton glutamate symport protein superfamily: Proton glutamate symport protein family: Proton glutamate symport protein domain: Proton glutamate symport protein species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=30570.80 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 l~~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 1 VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLL 80 (405)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
T ss_conf 98899999999999999972222127899999989999999999999999999999999745501002089999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~ 160 (405)
T d2nwwa1 81 TSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNS 160 (405)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999860133322000000014311001899999705587899964678630356788889999985022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~ 240 (405)
T d2nwwa1 161 ENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLL 240 (405)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00345667889999999999999999898887778889999998753334555567899999999999999888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g~ 320 (405)
T d2nwwa1 241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGS 320 (405)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 98289848884322310421200166556617899999975999352010236302100364124899999999987197
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a~i 400 (405)
T d2nwwa1 321 HLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAI 400 (405)
T ss_dssp CCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE
T ss_conf 99989999999999999986178616799999999998699886410565888887498550550898828776588841
Q ss_pred ----E
Q ss_conf ----9
Q 001846 864 ----V 864 (1006)
Q Consensus 864 ----V 864 (1006)
=
T Consensus 401 v~k~e 405 (405)
T d2nwwa1 401 VAKTE 405 (405)
T ss_dssp HHHHC
T ss_pred EECCC
T ss_conf 33579
|
| >d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=30569.99 Aligned_cols=1 Identities=0% Similarity=-0.062 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~ 80 (405)
T d1h6za3 1 VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM 80 (405)
T ss_dssp CCCCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99747997399865578455750568899899999786999998886299999999738976889999999997664776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 160 (405)
T d1h6za3 81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA 160 (405)
T ss_dssp CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 66523543115553023210122100455666665456689998742550566899999999763011246305678898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~~ 240 (405)
T d1h6za3 161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTA 240 (405)
T ss_dssp THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCCC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
T ss_conf 88888751651124572888887888999866541387541054677678888987620572377778761754113331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (405)
T d1h6za3 241 VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSLSLRWAKAHGVGEEERRKRYPS 320 (405)
T ss_dssp EEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCSCCEESSHHHHHHHHTTSSCCHHHHHHHSCC
T ss_pred HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCEECCCCCCCC
T ss_conf 11234542135665443334556777898753368646676233213765770466403310100145321104665545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~l~~e~~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~ILQaRPv~~t~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 400 (405)
T d1h6za3 321 MEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQV 400 (405)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHHTSSCHHHHHHTSCGGGG
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHH
T ss_conf 55528799999999999999982998204999989989999766788668889999999997699798999872798278
Q ss_pred ----E
Q ss_conf ----9
Q 001846 864 ----V 864 (1006)
Q Consensus 864 ----V 864 (1006)
-
T Consensus 401 ~~~~~ 405 (405)
T d1h6za3 401 DHLMH 405 (405)
T ss_dssp GGGGC
T ss_pred HHHCC
T ss_conf 67448
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30562.82 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~ 80 (405)
T d1jf9a_ 1 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 80 (405)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98979998758211467189982997382006899999999999998666987630409999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i 160 (405)
T d1jf9a_ 81 ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF 160 (405)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
T ss_conf 98755430237688897788842331026789989998375331699999999973968999877998838799999753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~ 240 (405)
T d1jf9a_ 161 DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA 240 (405)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEECHH
T ss_conf 69957999966777655438467766678873975641554000015653333078646613230156887510242265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~ 320 (405)
T d1jf9a_ 241 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP 320 (405)
T ss_dssp HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54036863223565675344555655553224307787677899999999999981849999999999988776651388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 321 DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 65556876767479997389899999999987892997660321567886099988999788999999999999999999
Q ss_pred ----E
Q ss_conf ----9
Q 001846 864 ----V 864 (1006)
Q Consensus 864 ----V 864 (1006)
=
T Consensus 401 ~r~~~ 405 (405)
T d1jf9a_ 401 HRLLG 405 (405)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 99609
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30563.97 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~g~~~~~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~~k~Pvil~~sPY~~~~~~~~~~~~~~~ 80 (405)
T d1lnsa3 1 LDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHD 80 (405)
T ss_dssp CCSSCCEETTEECSCSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCSSCEEEEEEECSSTTCCCHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98855433783413205887568688982888878899874799999742889974599996786787766544322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~~~~ 160 (405)
T d1lnsa3 81 MNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQ 160 (405)
T ss_dssp CCCCCCCCCSEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTTSHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 65433445543333233454222234555665555654455664445568898679879997888788999755468866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G 240 (405)
T d1lnsa3 161 QIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENG 240 (405)
T ss_dssp HHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf 63009999999871563333433443211454387458995289999999998608865419994476655888754178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~G 320 (405)
T d1lnsa3 241 LVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHG 320 (405)
T ss_dssp SBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCEEEEEE
T ss_conf 40035421255666653146655555400221115565154203455541233233555536853565137988899975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 w~D~~v~~~~~~~~y~al~~~~~~~Lilgpw~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ng~~~~~~~~~~~~g~~~W~ 400 (405)
T d1lnsa3 321 LQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWT 400 (405)
T ss_dssp TTCCSSCTHHHHHHHHHSCTTCCEEEEEESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEECTTSSSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 06889897899999999873799379995887899765555369999999999986889889898987999737999741
Q ss_pred ----E
Q ss_conf ----9
Q 001846 864 ----V 864 (1006)
Q Consensus 864 ----V 864 (1006)
-
T Consensus 401 ~~~~W 405 (405)
T d1lnsa3 401 MMNDF 405 (405)
T ss_dssp EESCS
T ss_pred CCCCC
T ss_conf 08989
|
| >d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo-1,4-beta-xylanase species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=100.00 E-value=0 Score=30486.18 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~a~~~~~y~n~~~~~~~~~i~~k~~~~~~~~f~~~~~~~~y~~~~~~~~~~~~~~~~i~d~~~~dv~SEGq 80 (404)
T d1h12a_ 1 AFNNNPSSVGAYSSGTYRNLAQEMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQ 80 (404)
T ss_dssp CCCSSCCSSCHHHHCCCCCHHHHTTCCSHHHHHHHHHHHHSSSCSSSCCEEEEEETTEEEEEEEEECCTTTCCEEEHHHH
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98888787761333755478898619999999999999971789884489971687665200012255479986654378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gYGMl~Av~~ndr~~FD~Lw~Wt~~~l~~~d~~~~~~~~gL~aW~~~~~~~~~~~v~d~nsAtDGDl~iA~ALl~A~~~W 160 (404)
T d1h12a_ 81 SWGMTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARW 160 (404)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999809999999999999998604555444455677613345888987556889999768999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~~~~Y~~eA~~il~~i~~~~~~~~~~~l~P~~~~f~nPSY~~P~~~~~fa~~~~~~~~~~~W~~v~~~s~~ll~~~~ 240 (404)
T d1h12a_ 161 GNSGEFNYYNDAITMLNTIKNKLMENQIIRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (404)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHHSEETTEECSCTTCSSCBCGGGCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89407799999999999888740578852556875578686325489999999860577540889999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~s~~p~~gL~~d~~~~dg~~~~~~~~~~~~~~~~~~~yDA~Rvpl~~a~dy~w~~~d~~~~~~~~~~~~f~~~~~~~~ 320 (404)
T d1h12a_ 241 TKVSGSPHWNLPTFLSRLDGSPVIGYIFNGQANPGQWYEFDAWRVIMNVGLDAHLMGAQAWHKSAVNKALGFLSYAKTNN 320 (404)
T ss_dssp HHHSSTTTTTCCCSCBCTTSCBCCSCCSTTCCSCTTEECTTTHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13467887789957872489736676667676778865502888778998887505888455799999999999875026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~G~~~~~~~~~g~~a~~a~a~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~L~~ll~lsG~~r~~ 400 (404)
T d1h12a_ 321 SKNCYEQVYSYGGAQNRGCAGEGQKAANAVALLASTNAGQANEFFNEFWSLSQPTGDYRYYNGSLYMLAMLHVSGNFKFY 400 (404)
T ss_dssp TTSSCBSCEETTEECSSCBCCHHHHHHHHHHGGGCCCHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHHHHTTTCCCCC
T ss_pred CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 88877631316896478888889999999999864793789999999970357888888789999999999963984772
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
.
T Consensus 401 ~~~~ 404 (404)
T d1h12a_ 401 NNTF 404 (404)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 4579
|
| >d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-CAM species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30492.61 Aligned_cols=1 Identities=200% Similarity=2.463 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 l~p~p~~~p~~~~~d~d~~~p~~~~~dp~~~~~~lr~~~~~~~~~~~~~~g~w~vtr~~dv~~vl~d~~~Fss~~~~~~~ 80 (404)
T d1re9a_ 1 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPR 80 (404)
T ss_dssp CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHGGGGSTTSCSEEEECGGGCEEEECSHHHHHHHHHCTTTEETTSCSSSH
T ss_pred CCCCCCCCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98877999832266789898577632818999999960899779856999989976999999997699757689987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~D~p~H~~~R~~l~~~Fs~~~l~~~~~~i~~~~~~ll~~~~~~g~~D~v~~~a~~l~~~vi~~llG~p 160 (404)
T d1re9a_ 81 EAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLP 160 (404)
T ss_dssp HHHHHCCCTTTTCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 44333456654578889999997526757843189998999999999974421467346420344577888799987420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~li~~~r~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ag~ 240 (404)
T d1re9a_ 161 EEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGL 240 (404)
T ss_dssp GGGHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTCEETTEECCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 02102321335655431226899999999999999998887506654402333100233345758899999999998763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 eTt~~~l~~~~~~L~~~p~~~~~l~~~~~~~~~~v~E~lR~~~p~~~~r~~~~~~~~~G~~ip~G~~V~~~~~aanrDp~ 320 (404)
T d1re9a_ 241 DTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDER 320 (404)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCCBCCEEEESSCEEETTEEECTTCEEECCHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 34678899999997550588999876410111123342234553333433223200388667640233243675367854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~f~dPd~F~p~R~~~~hl~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~g~~~lpv~~~P~~ 400 (404)
T d1re9a_ 321 ENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPAT 400 (404)
T ss_dssp TSSSTTSCCTTCSSCCCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCCCCEECTTCCCCEECSSBCEESCCEEECCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCEEEEEEEEECC
T ss_conf 47993331889999998877998616801999999999999999997898589999964315887258543468992068
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
|
T Consensus 401 ~~~~ 404 (404)
T d1re9a_ 401 TKAV 404 (404)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 6869
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30490.21 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~d~~d~l~~~R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA 80 (404)
T d1qz9a_ 1 TTRNDCLALDAQDSLAPLRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLA 80 (404)
T ss_dssp CCHHHHHHHHHTCTTGGGGGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96699997567781899985189999989867851033789999999999998750467565552328999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T d1qz9a_ 81 TLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQA 160 (404)
T ss_dssp TTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHH
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECEECCCCCCCHHHHHH
T ss_conf 99689987579956706777777655555420357885799962543347788775422132100010354542668986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~ 240 (404)
T d1qz9a_ 161 IDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV 240 (404)
T ss_dssp CSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred CCCCCEEEEEECCCCCCCCEECHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEEEEEEE
T ss_conf 69884599984245555616238997310324443326885123321233444454509998050214668856999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 320 (404)
T d1qz9a_ 241 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV 320 (404)
T ss_dssp CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36556307863223577555522234544335604554320010467888777888877668999999987678999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 321 EQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75435898799788883120139999169999999999888989862599869997997789999999999999999971
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
-
T Consensus 401 ~~~~ 404 (404)
T d1qz9a_ 401 KTWA 404 (404)
T ss_dssp TTTC
T ss_pred CCCC
T ss_conf 7889
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=0 Score=30488.91 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 80 (404)
T d1z7da1 1 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS 80 (404)
T ss_dssp CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 98799997787617888999885699946388997998999983306887846259699999999999857886665102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~ 160 (404)
T d1z7da1 81 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 160 (404)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999997444314433024410243037789999998875213443222442222245788744333456554455677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~ 240 (404)
T d1z7da1 161 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 240 (404)
T ss_dssp -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 88876300236656899999706997799999778388897409999999999999881978999767547774434345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~ 320 (404)
T d1z7da1 241 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 320 (404)
T ss_dssp GGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf 00059887778872311289887554456399871478998576889895013555544344300003443001015789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999975699727887527199999748865599999999969938943899989997986789999999999999999
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
=
T Consensus 401 k~~~ 404 (404)
T d1z7da1 401 KFFD 404 (404)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9629
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30488.87 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~ 80 (404)
T d2byla1 1 GPPTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAF 80 (404)
T ss_dssp CCCCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98967999999877546788987844898454999979879999926889988553798999999999996478755643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~ 160 (404)
T d2byla1 81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 160 (404)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 31049999876543011332220147666403589999987640366312311223357884556510340577865455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 77888887157346679999985579986999978843888971499999999999998628079960465364635533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~ 320 (404)
T d2byla1 241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGII 320 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHCCCCCCEEEECCHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 33654699988999774646898662104521023312578887859886999999999999999854703566676688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 321 LRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp HHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999960136631356246289999826886129999999996991992489998999799678999999999999999
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
-
T Consensus 401 l~~f 404 (404)
T d2byla1 401 ILSF 404 (404)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 9729
|
| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Alpha-amylase AmyC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30487.71 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~k~~l~lvlH~HqP~~~~~~~~~~~ee~W~~~~~~~~Y~pll~~l~~~~~~r~t~n~sP~LleQL~D~~~~~~f~~~~~~ 80 (404)
T d2b5dx2 1 MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEK 80 (404)
T ss_dssp CCEEEEEEEEECCCCCCCTTCSSCTTHHHHHHHHHHTHHHHHHHHHHSSCCCEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 93489999945888644899886443669999999988999999985868619998779999987586756446999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~ 160 (404)
T d2b5dx2 81 LIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVN 160 (404)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCHHHHH
T ss_conf 99986666552234204788999999999999999999966478999999997698048723520123455049869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Qi~~g~~~~~~~fG~~P~G~W~pE~a~~~~l~~~l~~~Gi~~~~~d~~~l~~~~~~~~~~~~~p~~~~~~~~~~~rd~~ 240 (404)
T d2b5dx2 161 AQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPE 240 (404)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEECGGGCBCTTHHHHHHHTTCCEEEECTHHHHTSSSCCTTGGGSCEECTTSCEEEECCGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999999999986999988978753558769999997798699968335523577887666576215886157742510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~vws~~~G~pg~~~~~~~~~~~~~~~~~~~i~~~frd~~ls~~igf~y~~~~~~~~~~~~k~~Yd~~~A~~~a~~~a 320 (404)
T d2b5dx2 241 SSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHA 320 (404)
T ss_dssp GCGGGGCTTTSGGGCTTSBCTTCCHHHHSCHHHHGGGSCTTSCCCCCSCCCBBCCSSCSCGGGCCBCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 01235414568878842121024533467776135764477632011402303566446643234479899999999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~f~~~~~~~~~~~~~~~~~~~vv~i~~DgE~fGh~w~eG~~fL~~l~~~l~~~~~i~~~T~se~l~~~~~~~~~~l~~g 400 (404)
T d2b5dx2 321 RDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADS 400 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHHCSSEEECCHHHHHHHCCCCCBCCCCSB
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999876523689987999755132066713379999999999863898389769999986899772230799
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
-
T Consensus 401 SWg~ 404 (404)
T d2b5dx2 401 SWGA 404 (404)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 9998
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30490.38 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn 80 (404)
T d1uyra2 1 NMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV 80 (404)
T ss_dssp TSCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCEEEEEEEECCEEEEEEEE
T ss_conf 98989789999800135657899999777999846755555445010287025520046786699999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i 160 (404)
T d1uyra2 81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160 (404)
T ss_dssp CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 76102687568755653055565404786685579999999998652346645886137766676899987899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el 240 (404)
T d1uyra2 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL 240 (404)
T ss_dssp HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHEECCHHHHCCHHHHHHHHHHH
T ss_conf 99998548997999957864130234103676677655488878654106786654321033021113265568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~l~~~~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e~~ 320 (404)
T d1uyra2 241 RSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEY 320 (404)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98725755587789999999999999862789999999998508687898568466122878859999999999874999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
T d1uyra2 321 LIKRLSHQVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSDHDNAIDGLS 400 (404)
T ss_dssp HHHTTTTCCSSCCHHHHHHHHHTTSCTTSCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999985777787999999999987346865639999999847799999999998999999999997539088999999
Q ss_pred ---E
Q ss_conf ---9
Q 001846 864 ---V 864 (1006)
Q Consensus 864 ---V 864 (1006)
=
T Consensus 401 ~~~~ 404 (404)
T d1uyra2 401 EVIK 404 (404)
T ss_dssp TCCC
T ss_pred HHHC
T ss_conf 9849
|
| >d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154c1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30409.19 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~lR~~GPv~~~~~~g~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (403)
T d1gwia_ 1 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLAN 80 (403)
T ss_dssp CCEECCTTCSCHHHHHHHHHHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTTEECCGGGCHHHHTTCSCTTCTTHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888987669559999998149978988479960999679999999966976133765333222466765443200003
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~ll~~dG~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~a~~~~~~~~~~~~g~~~~~~ 160 (403)
T d1gwia_ 81 PGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARL 160 (403)
T ss_dssp CCSSGGGCCHHHHHHHHHHHTTTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 68862158857899999997640443313222447989899875321035844431034433333233221047641000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~tt 240 (403)
T d1gwia_ 161 PRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETT 240 (403)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 00022233222222048999999999987689999987427642222111112123320123358999999987064210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~l~~~~~~l~~~p~~~~~l~~~~~~l~~~i~E~lRl~pp~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rd~~~ 320 (403)
T d1gwia_ 241 ISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERA 320 (403)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTSSCHHHHHHHHHHHSCSBCCEEEEEESSCEEETTEEECTTCEEEECHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCHHH
T ss_conf 11445555433421589999997620100001220221275200024344687670435654632353100245677654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~pdP~~F~PeR~~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~ll~~f~~~~l~~p~~~~~~~~~~~~~~~~~lpv~~~ 400 (403)
T d1gwia_ 321 HGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA 400 (403)
T ss_dssp HCGGGGSCCTTCCCSSCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCSCTTBCCBSCCEEESS
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEEE
T ss_conf 09955434878899998376688872680199999999999999999679788888834464688655579876479995
Q ss_pred --E
Q ss_conf --9
Q 001846 864 --V 864 (1006)
Q Consensus 864 --V 864 (1006)
-
T Consensus 401 ~~~ 403 (403)
T d1gwia_ 401 HHH 403 (403)
T ss_dssp CC-
T ss_pred CCC
T ss_conf 079
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=0 Score=30414.56 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai 80 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL 80 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98789999998508981899999972899958899978895206989999999999974760014889986779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 160 (403)
T d1wsta1 81 ARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEK 160 (403)
T ss_dssp HHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99999984899876773642221178899999986268755567886303567776404540267523667743112122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S 240 (403)
T d1wsta1 161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGT 240 (403)
T ss_dssp HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 00011101343212322466898786399999999998887449265345021212347887874345677770799845
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 320 (403)
T d1wsta1 241 FSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE 320 (403)
T ss_dssp STTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55133685663444456578899999876402345530145677654114430467889999888999999999864668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 321 GVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 73780788146999989999999999999997897999336636899989979999567999999999999999999998
Q ss_pred --E
Q ss_conf --9
Q 001846 864 --V 864 (1006)
Q Consensus 864 --V 864 (1006)
|
T Consensus 401 k~~ 403 (403)
T d1wsta1 401 KRV 403 (403)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 449
|
| >d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyC species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30411.85 Aligned_cols=1 Identities=0% Similarity=-2.187 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~dP~~~~~~lR~~gPv~ri~~~~~~~~g~~~~w~vt~~~~vr~vl~d~~~fss~~~~~~~ 80 (403)
T d1ueda_ 1 DIDQVAPLLREPANFQLRTNCDPHEDNFGLRAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEHFTTRPQFTQS 80 (403)
T ss_dssp CCCSCCCEEECCTTTTCEETTEECHHHHHHHTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSSEECCCCC---
T ss_pred CHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 93234767688344023117997699999995399798516776435888489979999999997598646488665644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~l~~~Dg~~h~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~ 160 (403)
T d1ueda_ 81 KSGAHVEAQFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVGAHALCE 160 (403)
T ss_dssp ------CGGGTTCGGGCCTTHHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55442202216764157815799999998686597999876179999999999874124875203566654456666677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rr~~~~~~~~~~~~~~~~~~ls~~~l~~~~~~~l 240 (403)
T d1ueda_ 161 LLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNRYLDNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALI 240 (403)
T ss_dssp HHTCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 73260333456655554302301567888877777899999999999862133115555422366466888877788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~aG~dTt~~~l~~~l~~L~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~R~~~~d~~~~G~~ip~G~~V~~~~~~ 320 (403)
T d1ueda_ 241 LGGVETVAGMIGFGVLALLDNPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILM 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTHHHHCHHHHHHHHHHHHHHHCSSCSCSCEEESSCEEETTEEECTTCEEEECHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHC
T ss_conf 40104678999999999862320101122202442212333202223344322010134645589743333210001000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~rdp~~f~dP~~F~PeR~~~~~lpFG~G~r~CiG~~lA~~el~~~l~~Ll~~f~~~~l~~~~~~~~~~~~~~~~~~~lp 400 (403)
T d1ueda_ 321 ANRDEALTPDPDVLDANRAAVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCPDQVP 400 (403)
T ss_dssp HTTCTTTSSSTTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSSSCCBSCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCEECCEEEE
T ss_conf 25783227994243889999999979998846918999999999999999996797788988776544477510764656
Q ss_pred --E
Q ss_conf --9
Q 001846 864 --V 864 (1006)
Q Consensus 864 --V 864 (1006)
-
T Consensus 401 v~f 403 (403)
T d1ueda_ 401 VTW 403 (403)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 569
|
| >d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nuclear pore complex protein Nup133 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30409.30 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~ve~~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~VW~y~~s~~~~~~~C~~L~LP~sdl~~~a~ 80 (403)
T d1xksa_ 1 ESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSAD 80 (403)
T ss_dssp CCSSEEEEECSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 97542676778987688998862057887447999899679999799999971578887787521797189645455676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Lv~v~~~~~~~~~~~~~~~gvi~vs~tG~VryW~sI~~~~s~~e~~i~l~~~E~~~~l~~~e~~g~ilatstg~l~l~~~ 160 (403)
T d1xksa_ 81 LVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIP 160 (403)
T ss_dssp GEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCEEEECHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEECCEEEEEEEC
T ss_conf 56761367767667887657999979921898710255766423431368966899888507842999947514999923
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~l~~~~L~~~~g~l~Gi~~~~sSl~~~~~~~~~~~~~s~~~~~~~~~v~~ls~~~lq~W~l~~~~e~~~~~~di~~ 240 (403)
T d1xksa_ 161 ESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELDDSSEKHAYSWDINR 240 (403)
T ss_dssp CTTSCEEEEECTTCCCC------------------CCCCEEEEEEETTTTEEEEEESSEEEEEEECSSCEEEEEEEEHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEHHHHH
T ss_conf 78982899993588754555334542002124775434211133455314999977995478980389861567513789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~i~e~~~~~i~~~~~~~~~~~~~i~~~~LD~~~~~~g~~iL~~~~~~~~~~~~~yy~L~ti~~~~~~~~~~~~~~l~~~~ 320 (403)
T d1xksa_ 241 ALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYN 320 (403)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTCEEEEEEEEEETTEEEEEEEEECTTSSSCBEEEEEEEECCBTTBCCSCEEEEECSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf 99999998752023556565444305998875848976999999732668870799999998278713788999867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~~~rl~vp~p~~~~ayv~~~~~V~~~~~~~~~~~~~~d~I~F~~~~d~il~~~~~~~~pl~fs~~~Glv~it 400 (403)
T d1xksa_ 321 PPFQSEDLILCQLTVPNFSNQTAYLYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSIT 400 (403)
T ss_dssp CBCCCGGGCCCEEECCCSSSSEEEEECSSEEEEEECTTCTTCCCCEEEECCGGGCCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCEEEEEEECCEEEEEE
T ss_conf 85674434760599658998389999099899995789989984417888454677885121578769999234189995
Q ss_pred --E
Q ss_conf --9
Q 001846 864 --V 864 (1006)
Q Consensus 864 --V 864 (1006)
=
T Consensus 401 ~~~ 403 (403)
T d1xksa_ 401 SRE 403 (403)
T ss_dssp ECC
T ss_pred CCC
T ss_conf 799
|
| >d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3120 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=30412.30 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~wi~~~a~pL~~~~p~~~~~Dl~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~va~E~d~~~~ 80 (403)
T d3b55a1 1 NQIAKWLEAHAKPLKTTNPTASLNDLKPLKNMVGSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDRA 80 (403)
T ss_dssp HHHHHHHHHHCEEECCCCTTSCSGGGTTHHHHHTTCSEEEEEESCTTBHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHHH
T ss_pred CHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 95899999846718888999984779999987479739997267656079999999999999997699889994795889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~vn~yV~~g~g~~~~~~~~~w~~~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~~~~~s~~~~v~~yl~~~~p~~~~~~ 160 (403)
T d3b55a1 81 LELDRYVLTGKGNPSQHLTPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNENVYNNIIEYIKANNSKLLPRV 160 (403)
T ss_dssp HHHHHHHHHSCSCGGGTSCGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEECSCCCHHHHHHHHHHHHHHHGGGTHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 99988875488887787676435288999999999984458877842799854565205578999999986198889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 240 (403)
T d3b55a1 161 EEKIKGLIPVTKDMNTFESLTKEEKEKYVLDAKTISALLEENKSYLNGKSKEFAWIKQNARIIEQFTTMLATPPDKPADF 240 (403)
T ss_dssp HHHHHHHGGGSSSHHHHHTSCHHHHHHHHHHHHHHHHHHHHTGGGGTTTSHHHHHHHHHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99874123333465667764155578899999999999998476541274679999999999999999998456774667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~RD~~Maenl~wl~~~~~kiivwaHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~~~~~~~~ 320 (403)
T d3b55a1 241 YLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLSFIYPKVAGQHLAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGP 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEEEHHHHSSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCC
T ss_conf 77899999999999870689889995705425677554557554889999884874499999734640512567788663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~v~~~~~~S~E~~l~~~~~~~~~ldlr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~fDali~i~~~tP~ 400 (403)
T d3b55a1 321 YGTLKSDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLGKAFDILVQIQKVSPS 400 (403)
T ss_dssp EEECCCCCTTSHHHHHHTSSCSEEEEEGGGCCHHHHHHHTSCEEEECCCSBCBTTBCSEEEECHHHHCSEEEEEEEECBC
T ss_pred EEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
T ss_conf 02227999988999997369986898764365331557630424045357898666754058859969589996565745
Q ss_pred --E
Q ss_conf --9
Q 001846 864 --V 864 (1006)
Q Consensus 864 --V 864 (1006)
-
T Consensus 401 ~~~ 403 (403)
T d3b55a1 401 QVH 403 (403)
T ss_dssp CBC
T ss_pred CCC
T ss_conf 369
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30407.64 Aligned_cols=1 Identities=0% Similarity=-2.021 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~p~~~~g~~~i~~~f~w~~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk 80 (403)
T d1hx0a2 1 EYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFR 80 (403)
T ss_dssp CCSCCCCTTCCEEEEETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 98998889972589700076899999999999981998799496815766788999876003687771489999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
T d1hx0a2 81 DMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDC 160 (403)
T ss_dssp HHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHS
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99999986699799997124466655321345666764543334577788887667887656788874655771002331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~~~pDLn~~np~Vr~~~~~~l~~~~~~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (403)
T d1hx0a2 161 QLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE 240 (403)
T ss_dssp BGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 23445864679999999999999999873977653232321678899999999875073200156775278877516830
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~ 320 (403)
T d1hx0a2 241 AIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARL 320 (403)
T ss_dssp SSCGGGGTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTTGGGTCCCGGGEEECSCCTTGGGTCSSCGGGCCCGGGHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 21022025887102243223245787641620478998750111368845057863467775556678864144456789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~a~af~lt~p~G~P~iy~gy~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~ 400 (403)
T d1hx0a2 321 YKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNV 400 (403)
T ss_dssp HHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCCBCTTSCBCTTBCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999987898164676306644544577667778999888874688747767778518777668999999998663
Q ss_pred --E
Q ss_conf --9
Q 001846 864 --V 864 (1006)
Q Consensus 864 --V 864 (1006)
=
T Consensus 401 ~~g 403 (403)
T d1hx0a2 401 VDG 403 (403)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 679
|
| >d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=0 Score=30339.52 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~sP~d~ry~~~~~~~ifs~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~~~~d~~~i~~~e~~~~hdv~a~~~~l 80 (402)
T d1dofa_ 1 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLERETGHDILSLVLLL 80 (402)
T ss_dssp CCCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------CHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 92987656498899987294999999999999999999874989889999998723388999999988589804799998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~vH~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~ 160 (402)
T d1dofa_ 81 EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYY 160 (402)
T ss_dssp HHHHCCSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 65347888502676487661598999986466788899999999999987640211003765256554229988888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~rd~~~e~~~~L~~~a~~L~kia 240 (402)
T d1dofa_ 161 ELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLA 240 (402)
T ss_dssp HHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875034566552224430445789999887345555235555541001688999888898999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~Di~~~s~~e~ge~~e~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~ 320 (402)
T d1dofa_ 241 VEIRELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANERVWIPEALLALD 320 (402)
T ss_dssp HHHHHHTSTTTCSEESCC---------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999717753541134675410258878428998724378887888999875124432120245655302532599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~l~~d~~~l~ 400 (402)
T d1dofa_ 321 EILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSLK 400 (402)
T ss_dssp HHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCC
T ss_conf 99999999876499989999999985158667999999999869999999999999999999958985999860825147
Q ss_pred -E
Q ss_conf -9
Q 001846 864 -V 864 (1006)
Q Consensus 864 -V 864 (1006)
.
T Consensus 401 l~ 402 (402)
T d1dofa_ 401 LC 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Neisseria gonorrhoeae [TaxId: 485]
Probab=100.00 E-value=0 Score=30338.38 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 p~~p~~~p~pa~~~~~~~~a~~~~vsf~~LpGW~~dd~~~al~af~~sC~~l~~~~~w~~~C~~a~~~~~~~~~aR~Ffe 80 (402)
T d2g5da1 1 PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFE 80 (402)
T ss_dssp CCCCCCCCCCTTCEEEETTEEEEECCGGGSTTCTTCCHHHHHHHHHHHHHHHTTSTTCHHHHHHHHTSCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 98887899997654567764234546888889740139999999999877503246789999999717998099999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~F~p~~v~~~g~~~Gl~TGYYEP~l~gS~~r~~~y~~PlY~~P~DLv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
T d2g5da1 81 RYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGG 160 (402)
T ss_dssp HHEEEEEEEETTBSCEEEEEEEECEEEEESSCCSSCCEEEEBSCTTCEEEECC--------CEEECCCBTTBCC------
T ss_pred HHCEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 72789998407987525877403057653366888887734589532225555433322222222334455443334444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~dl~~~~~~~~~~~~~gR~~~~~~vPY~~R~eI~~g~l~~~~~elaW~~Dpvd~FFLqIQGSGrl~l~dG~~~rvgY 240 (402)
T d2g5da1 161 THTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGY 240 (402)
T ss_dssp -EEECTTTSCCCSCCSEEEEEEETTEEEECCCHHHHHTTTTTTSSCEEEEESCHHHHHHHHHHSCEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHEEECCCEEEEECCCCEEEEEE
T ss_conf 33354112563222101100102785134776999864875677745788378255352665263699937999899986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ag~NG~pY~sIGr~Li~~G~i~~~~~Smq~Ir~Wl~~nP~~~~ell~~NpsYVFFr~~~~~~~~GP~Ga~gvpLtp~rSi 320 (402)
T d2g5da1 241 ADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGGDGPVGALGTPLMGEYAG 320 (402)
T ss_dssp EEECCCCCCCHHHHHHTTTSSCTTSCSHHHHHHHHHHCGGGHHHHHTTCCCCEEEEEC-----CCCBCTTSSBCCTTSEE
T ss_pred CCCCCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 36789965108999976698671128999999999979799999997499749988778888899864367756677046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 AvD~~~iPlG~pv~l~t~~p~~~~~~~rL~iAQDTGgAIkG~~R~D~f~G~G~~Ag~~AG~mk~~G~~~~LlPk~~~p~~ 400 (402)
T d2g5da1 321 AIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEY 400 (402)
T ss_dssp EECTTTSCTTCEEEEEEECTTTCSEEEEEEEEEEECTTCCSSSEEEEEEEESHHHHHHHHHCEEEEEEEEEEETTCCCCC
T ss_pred EECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 61776257887389974577778850027998515765348861698751888999887452575259999528888677
Q ss_pred -E
Q ss_conf -9
Q 001846 864 -V 864 (1006)
Q Consensus 864 -V 864 (1006)
=
T Consensus 401 ~~ 402 (402)
T d2g5da1 401 RP 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 97
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30337.12 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~ 80 (402)
T d1xk7a1 1 LPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFL 80 (402)
T ss_dssp CCCCCCSTTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 98899969999888883780289999999998299599989999997434588516773899859998693978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Lv~~aDv~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA~sG~~~~~G~~~~p~~~ 160 (402)
T d1xk7a1 81 KLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPA 160 (402)
T ss_dssp HHHTTCSEEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHHHHTSGGGSEETTEECCC
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 98750587534101222113465421001002443213655565776765467777663212210000101455455433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~d~~~g~~aa~ailaAL~~r~~TG~Gq~VdvSm~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~y~~~D 240 (402)
T d1xk7a1 161 FPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCAD 240 (402)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCCCCBBTTBCSSBTTEEEEEETT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 44322123124431345777640345788665443432201344321111000123332222234677422458553146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 G~i~i~~~~~~~~~~l~~~~g~~~l~~dp~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~t~~e~~~~l~~~gvp~apV~ 320 (402)
T d1xk7a1 241 GYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVL 320 (402)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCGGGTTSSSSCTTCCCCBTTTSTTHHHHHHHHHHHHHTSCHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCC
T ss_conf 76211233222222201121001222322233322221000366778899999999865021145566550795010478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~e~~~dpq~~~r~~~~~~~~~~~g~~~~p~~p~~fs~t~~~~~~~aP~lGeht~eIL~eLG~s~~eI~~L~~~gvi~~ 400 (402)
T d1xk7a1 321 TVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKV 400 (402)
T ss_dssp CGGGSTTCHHHHHHTCEEEEECTTSCEEEEECCSSCCSSSCCCCCCCCCCTTTTHHHHHHHTTCCHHHHHHHHHTTSEEC
T ss_pred CHHHHHHCHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEC
T ss_conf 99998779898971999988768997667305770158999887899999985499999986999999999998829868
Q ss_pred -E
Q ss_conf -9
Q 001846 864 -V 864 (1006)
Q Consensus 864 -V 864 (1006)
=
T Consensus 401 ~~ 402 (402)
T d1xk7a1 401 ED 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: N-acyl-D-glucosamine 2-epimerase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30336.05 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~ilpfW~~~~~D~~~GGf~~~ld~dg~~~~~~k~~~~~~R~l~~fs~a~~~~~~~~~~~~ 80 (402)
T d1fp3a_ 1 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPEL 80 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 94168999999999999999999878855807678972143789998579886365549999999999997463489899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~a~~g~~~L~~~~~~d~~~Gg~~~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~~i~~~~~~ 160 (402)
T d1fp3a_ 81 LDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRE 160 (402)
T ss_dssp HHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999981883589998898878999967654564120899999899886039989999999999999998421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~g~~~~~~~~~~~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 240 (402)
T d1fp3a_ 161 DPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 240 (402)
T ss_dssp CGGGGCCCCCTTSCCEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHTTEETTTTEECSEEETTSCBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 56888741247875434354179999999997343430579999999999998875016541257764314667666834
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~i~pGh~~e~~wLll~a~~~~~~~~~~~~a~~~~~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i 320 (402)
T d1fp3a_ 241 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAM 320 (402)
T ss_dssp HHEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47278502359999999999873990479999999999999829557899588875378886655441377787899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~a~l~ly~~tgd~~~l~~a~~l~~~~~~~f~D~~~G~W~~~~~~~g~~~~~~k~~p~~~~YH~~ral~~~~~~l~~~~~~ 400 (402)
T d1fp3a_ 321 IAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVPRCLAMCEEMLSALLSR 400 (402)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSCSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987049989999999999999986877999766743899989986677888898461899999999999999851
Q ss_pred -E
Q ss_conf -9
Q 001846 864 -V 864 (1006)
Q Consensus 864 -V 864 (1006)
.
T Consensus 401 ~~ 402 (402)
T d1fp3a_ 401 LA 402 (402)
T ss_dssp HC
T ss_pred CC
T ss_conf 39
|
| >d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-ERYF species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=100.00 E-value=0 Score=30333.96 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~f~~dpy~~y~~lr~~gPv~~~~~~g~~~~vvt~~e~v~~vl~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T d1z8oa1 1 TVPDLESDSFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKKKYPGVEVEFPAYLGFPEDV 80 (402)
T ss_dssp CCCBTTSGGGTSSHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCTTEECCTTCCCTTCCCCCGGGTTCCHHH
T ss_pred CCCCCCCHHHHHCHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98787974566594999999983499789850895389988999999996497534483112565544564223442667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~l~~~dg~~H~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (402)
T d1z8oa1 81 RNYFATNMGTSDPPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEK 160 (402)
T ss_dssp HHHHSSSGGGCCTTHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHHTTCCGG
T ss_pred HHHHCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77741562016577776420212210243205677888899999875203222223333212330344556666300377
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~d~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~aG 240 (402)
T d1z8oa1 161 YRGEFGRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEPGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAG 240 (402)
T ss_dssp GTTTHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCEETTTEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 88888888889875065112566788899999999988999728887779999985664288787789888888873064
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~dTt~~~l~~~l~~l~~~P~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~~~d 320 (402)
T d1z8oa1 241 FEASVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRD 320 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 54315678888888765058999975013445430155654220244332134567555784134543022334452168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 p~~f~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 400 (402)
T d1z8oa1 321 PKQFPDPHRFDVTRDTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRL 400 (402)
T ss_dssp TTTSSSTTSCCTTSCCTTCCTTCSSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCCCCCSSSCCCSCCEEET
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEE
T ss_conf 53278911228899999988989986578139999999999999999967977578887876352787668988557996
Q ss_pred -E
Q ss_conf -9
Q 001846 864 -V 864 (1006)
Q Consensus 864 -V 864 (1006)
=
T Consensus 401 ~~ 402 (402)
T d1z8oa1 401 DG 402 (402)
T ss_dssp TC
T ss_pred CC
T ss_conf 59
|
| >d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154a1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30257.44 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~dp~~~d~~~~~~~lr~~Gpv~~~~~~g~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1odoa_ 1 ALVLDPTGADHHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVEN 80 (401)
T ss_dssp CEECCTTCTTHHHHHHHHHTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTEESCHHHHCTTHHHHTTTCTTTHHHHCCS
T ss_pred CEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 94358899981999999996399899964991199988999999996397724366666532223455541123304787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~~~g~~h~~~R~~l~~~fs~~~v~~~~~~i~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~ 160 (401)
T d1odoa_ 81 MFTAYGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGHLMGVPQDRRDG 160 (401)
T ss_dssp GGGCCHHHHHHHHHTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 62388599999999877651721477777788999999976422013332222321000000011221235653112123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~l~~~g~~t 240 (401)
T d1odoa_ 161 FRALVDGVFDTTLDQAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYET 240 (401)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 44455554310102578899999999999987664136776642232112333334689799999999999998656521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~e~~R~~p~~~~~~~~~~~~d~~~~~G~~ip~Gt~v~~~~~~~hrd~ 320 (401)
T d1odoa_ 241 TVNVIDQAVHTLLTRPDQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHP 320 (401)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTSSCHHHHHHHHHHHSCSBSCEEEEEESSCEECTTSCEECTTCEEEECHHHHTTCT
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCHHHHHCCC
T ss_conf 02355543201343214431001233311000001111112455333322346525229779617952324488870772
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~dp~~F~PeR~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~l~~~~~~~~~~~~~~~~~~~~lpv~~~ 400 (401)
T d1odoa_ 321 DWHEDADTFDATRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH 400 (401)
T ss_dssp TTSTTTTSCCTTCSCCCCCTTCSSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESCTTSCCCBCSCSSBCCBSCCEEECC
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 22896543287878999987789884783599999999999999999779868899877771467875579874059983
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
-
T Consensus 401 ~ 401 (401)
T d1odoa_ 401 A 401 (401)
T ss_dssp -
T ss_pred C
T ss_conf 9
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=30262.31 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~pi~~lv~~ll~~A~~~~ASDIHi~~~~~~~~V~~RidG~L~~~~~~~~~~~~~l~~~~ 80 (401)
T d1p9ra_ 1 DFFSLAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRV 80 (401)
T ss_dssp CHHHHHHC-------------CHHHHHHHHHHHHHHHHTCSEEEEEEETTEEEEEEEETTEEEEEECCCGGGHHHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHH
T ss_conf 95464312787344654257767999999999999982980599981788846999989998887888855699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~a~~~~~~~~~~q~g~~~~~~~~~~i~~Rv~~~p~~~g~~~vlRl~~~~~~~~~l~~LG~~~~~~~~l~~l~~~~~Gl 160 (401)
T d1p9ra_ 81 KVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGI 160 (401)
T ss_dssp HHHTTCCTTCCSSCEEEEEEC-----CEEEEEEEECCTTSCEEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEE
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCE
T ss_conf 98513678887530120022313894488754442202344566543112332001443013577789999998641054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ 240 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLE 240 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 89876787774477999866625787469996267434567887026558767799999999984138889845768759
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~~~~~l~~~l~~vv~QrLv~~lCp~Ck~~~~~~~~~~~~~~~~~~ 320 (401)
T d1p9ra_ 241 TAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKK 320 (401)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEECTTTCEEEECCHHHHTTC-----
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 99999999724985899833676676654321002445667777898874205342188867688999999962354545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~~GC~~C~~~Gy~GR~~v~Evl~~d~~l~~~I~~~~~~~~l~~~~~~g~~tl~~~a~~~v~~G~~s~eEv~R~ 400 (401)
T d1p9ra_ 321 EPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRG 400 (401)
T ss_dssp CCCEEEECCCCSSSCSSSEEEEEEEEEEEECCHHHHHHHHTTCCHHHHHHHHHTTCCCHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 66379808996303799888732999998189999999984998999999998099029999999998599989998243
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
-
T Consensus 401 ~ 401 (401)
T d1p9ra_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30260.42 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~m~~~~~~~~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~ 80 (401)
T d1fc4a_ 1 GSHMRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA 80 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96044899999999999999759987513304788884893499889998765402546899999999999998198865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d 160 (401)
T d1fc4a_ 81 SVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND 160 (401)
T ss_dssp SCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC
T ss_pred CCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCC
T ss_conf 42131257088999999888761677447734445666789997457886899677643888705122575079975788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~di 240 (401)
T d1fc4a_ 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDI 240 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHCCCCCCCEE
T ss_conf 47899999985514567159997577789895565057898875428189800210145145799850101268888729
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp EEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99651430156776111378789999871792665067888788998875431234689999999987899986401358
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~i 400 (401)
T d1fc4a_ 321 FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVI 400 (401)
T ss_dssp CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76379999879999799999999999999789059758899789998439999787799999999999999999984888
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
-
T Consensus 401 ~ 401 (401)
T d1fc4a_ 401 A 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30259.51 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAI 80 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 97999889872689999999999998799899996830677898769748977850654541035200799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1iira_ 81 ATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQ 160 (401)
T ss_dssp HHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHH
T ss_conf 99999999976147642774124257888988887535422344565445532356412466542100001135566566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d1iira_ 161 SAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPP 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSSCCEECCCCCCCCCCCCCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 77877778888999984476410233210231023235644467777654332236755676555677888763148975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~V~hgG~~t~~Eal~~ 320 (401)
T d1iira_ 241 VYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARA 320 (401)
T ss_dssp EEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCHHHHGGGSSEEEECCCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCHHHHHHHHH
T ss_conf 99715754665689999999999769807984267764233578978997025879999545899963771699999981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~a~~~~~~~~~~~~~~aa~~i~~~i~r 400 (401)
T d1iira_ 321 GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR 400 (401)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999806614179999999987988876847899999999999996979999999999998750839999999999846
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
=
T Consensus 401 ~ 401 (401)
T d1iira_ 401 E 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450epok species: Sorangium cellulosum [TaxId: 56]
Probab=100.00 E-value=0 Score=30258.69 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~p~~~~dP~~~~~~lr~~gPv~~~~~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (401)
T d1q5da_ 1 DFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGL 80 (401)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHHHCSEEEETTTTEEEECSHHHHHHHHTCTTEECCGGGSTTHHHHHHSSGGGHHHHHHST
T ss_pred CCCCCCHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 97989867885949999999846998997999989983999999996598735475433454444655510233013651
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~dg~~h~~~Rk~l~~~fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1q5da_ 81 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISALLKVPAECDEKFRRF 160 (401)
T ss_dssp TTSCHHHHHHHHHHHGGGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHHTTCCGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 46888889876320421134213566788889888888876531011111578776543101100001100237888888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~i~~~~~~~l~ag 240 (401)
T d1q5da_ 161 GSATARALGVGLVPRVDEETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRLSTKELVALVGAIIAAG 240 (401)
T ss_dssp HHHHHHHTTTTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999875112222101677888899999999999877754125644327889876304565207889999999987046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~etta~~l~~~l~~L~~~p~~~e~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~g~~ip~G~~v~~~~~~~~r 320 (401)
T d1q5da_ 241 TDTTIYLIAFAVLNLLRSPEALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALR 320 (401)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHSCSBSSEEEEEESSCEEETTEEECTTCEEEEEHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 32024677778999975299999864465323343210000011134433323345620257666764067421002478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 dp~~f~dP~~F~PeR~~~~~lpFg~G~r~C~G~~lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~~~~r~~~~l~v~~~p 400 (401)
T d1q5da_ 321 DGTVFSRPDVFDVRRDTSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILKP 400 (401)
T ss_dssp CTTTSSSTTSCCTTSCCTTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEECSCCEECCCSSBCCEEECEEESSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCEEEEEC
T ss_conf 82227995434889999999998997558822999999999999999996799848899840678765686645399961
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
-
T Consensus 401 ~ 401 (401)
T d1q5da_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30258.49 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG 80 (401)
T d1a12a_ 1 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 80 (401)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf 93106678999789889999699988889999886503577908999929999189889999679989999589998877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g 160 (401)
T d1a12a_ 81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG 160 (401)
T ss_dssp SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 44655664235542354220022011100101000345311202145655544666775431001100168850699820
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~ 240 (401)
T d1a12a_ 161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240 (401)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEEEEEECCCE
T ss_conf 35225650378500346687662288875344567755544335652000035677778439999936876999955981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~ 320 (401)
T d1a12a_ 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL 320 (401)
T ss_dssp EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred EEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 86512221020354566310000010123554036999851012013561489788840334675678862333558888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~~ 400 (401)
T d1a12a_ 321 ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 400 (401)
T ss_dssp CCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEECCCC
T ss_conf 57999829999308879999489969999259988778999988860789643578998899999752439999979966
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
-
T Consensus 401 ~ 401 (401)
T d1a12a_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30258.39 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 mrIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1rrva_ 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT 80 (401)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 94999889875689999999999998799899997834677898779748976870776421566543378999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1rrva_ 81 VEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAA 160 (401)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999844898599982842668999999827974000000000102556423465556532001246788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~v 240 (401)
T d1rrva_ 161 RFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPPV 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCCHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 77765478999999983785331255430354211011133203577788689788866655459989997522479839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~ 320 (401)
T d1rrva_ 241 HIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATR 320 (401)
T ss_dssp EECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCCHHHHGGGSSEEEECCCHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 99878644578899999999998626974899505443455457898899731481777621248886177248999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~GvP~l~~P~~~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl~~~~r~~a~~~~~~~~~~g~~~aa~~ie~~~~ 400 (401)
T d1rrva_ 321 AGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVLAAVG 400 (401)
T ss_dssp HTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHTSHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 39998980661208999999998798897574789999999999998497999999999998755179999999999857
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
=
T Consensus 401 r 401 (401)
T d1rrva_ 401 R 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 6
|
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30257.37 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~a~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~ 80 (401)
T d1jdpa_ 1 EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARG 80 (401)
T ss_dssp CCCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99899722899997799940221678999999999999866786556789948999998289997999999999997366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~ 160 (401)
T d1jdpa_ 81 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 160 (401)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88089999987503678878888619854631445542122345677279831546889999999877517737999995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~ 240 (401)
T d1jdpa_ 161 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA 240 (401)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 68652057899998888736534899740245676268999998632574069999346889999999998188888769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yDav 320 (401)
T d1jdpa_ 241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAI 320 (401)
T ss_dssp EEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99633114643347301025542367888865414212458898689999999999984067776666207889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~~~~~~~~ 400 (401)
T d1jdpa_ 321 LLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMR 400 (401)
T ss_dssp HHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEE
T ss_conf 99999999998568999889999999867917717668998999882576799999997898799999998997669974
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
=
T Consensus 401 ~ 401 (401)
T d1jdpa_ 401 P 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=0 Score=30256.58 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai 80 (401)
T d7aata_ 1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 97010689799986999999983778999588617877688899898789999999996289888889977789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T d7aata_ 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 99984247865576753885462578899999876674358985599816777640258998599689985424446665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d7aata_ 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 37888888722777618999647889855458999999999987356379998636144314886553356666532201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 13406751330005515531021261888889888888888764033563057888998841787889999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999857988863577997589953979999999998299998897179852699888999999999974
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
=
T Consensus 401 k 401 (401)
T d7aata_ 401 K 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Protein prenyltransferases domain: Protein farnesyltransferase, beta-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30259.28 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r 80 (401)
T d2h6fb1 1 EPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASR 80 (401)
T ss_dssp CCCGGGSGGGGGGSCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCH
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 97345467664331468898637889999999999999987534037865532599999999999986988760625462
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~f 160 (401)
T d2h6fb1 81 PWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY 160 (401)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999985998538999999999999718999968999987433999999999997177521023339999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 L~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~ 240 (401)
T d2h6fb1 161 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV 240 (401)
T ss_dssp HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99951888980002367766212699999999958997778999999999806888874578788763539899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL 320 (401)
T d2h6fb1 241 ILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYIL 320 (401)
T ss_dssp HHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 84788645899999999973778778437887887635788899889999999861246631113333437999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~~p~ 400 (401)
T d2h6fb1 321 MCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV 400 (401)
T ss_dssp HHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHTSCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97478999948897899870088899999986577676676643235775346633798615889999999999985899
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
=
T Consensus 401 ~ 401 (401)
T d2h6fb1 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Ribonuclease II family protein DR0020 species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=30256.21 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~p~~~~~~~v~ve~~~~~~~~~~~i~~~lg~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 80 (401)
T d2r7da2 1 QPELTPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVELPVPDFDPAEERL 80 (401)
T ss_dssp CCCCCHHHHHHHHHHHTTSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCCSCCCCCCCCCCTTSCCE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99899888899998123899973124522999996569999998199865566780999999863267888743334661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Dlr~l~~~tID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~v~~~s~Ld~eA~~R~tSvYlp~~~~pMLP~~ls~~~ 160 (401)
T d2r7da2 81 DLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKA 160 (401)
T ss_dssp ECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCC
T ss_conf 52028679988998864421036787479968999961356662067776899999858464089972423758874132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 SL~~~~~r~als~~~~ld~~g~i~~~~~~~s~I~~~~ltY~~v~~~~~~~~~~l~~l~~~~~~l~~~R~~~gal~~~~~~ 240 (401)
T d2r7da2 161 GLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQRLAYQEAQARLEAGEEPFVTLARLARASRRLREGEGALSIDLPE 240 (401)
T ss_dssp STTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEEEEEHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 24567566541147887267872332488878998301277899886314136788888999999999866884335654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~d~~~~~~~~~~~~~s~~lVeE~MilAN~~~A~~l~~~~~p~iyR~~~~p~~~~~~~~l~~~~~~~~~~~~a~ys~ 320 (401)
T d2r7da2 241 VRVKADETGASVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVAGDTLPAMWARRKTLARTRFQP 320 (401)
T ss_dssp EEEEEETTEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCCCCSHHHHHHHHHHCCCEEEES
T ss_pred CEEEECCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCEEEECC
T ss_conf 20221367751002541312456676765301548999864368753103678824432110788887640044006758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 321 ~~~~H~gLgl~~YthfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~er~~~~~~~~~yl~~~ 400 (401)
T d2r7da2 321 SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQ 400 (401)
T ss_dssp SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98867110678606269725405789999999999769999999999999999999999999999999999999999859
Q ss_pred E
Q ss_conf 9
Q 001846 864 V 864 (1006)
Q Consensus 864 V 864 (1006)
=
T Consensus 401 p 401 (401)
T d2r7da2 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 2
|
| >d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Fusarium oxysporum [TaxId: 5507]
Probab=100.00 E-value=0 Score=30184.08 Aligned_cols=1 Identities=100% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 q~~~~t~E~HP~ltwq~CT~~ggCt~~~g~vV~D~nwrw~h~~~g~~~c~~gn~w~~~lCpd~~tCa~nC~ldGad~~~y 80 (400)
T d3ovwa_ 1 ETPDKAKEQHPKLETYRCTKASGCKKQTNYIVADAGIHGIRQKNGAGCGDWGQKPNATACPDEASCAKNCILSGMDSNAY 80 (400)
T ss_dssp CEECSSCCCCCEEEEEEEETTTEEEEEEEEEEECHHHHCEECTTSCBSCCTTSCCCTTTCSSHHHHHHHCEECCCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887676588523265058998586233499824733244058973234388565344887566676435237664555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~GVttsG~sLtl~~vt~~~~vGsRvYLl~~d~~~Yqmf~Llg~EfTFdVD~S~lpCGlNgALYfveM~adGg~s~~~~ 160 (400)
T d3ovwa_ 81 KNAGITTSGNKLRLQQLINNQLVSPRVYLLEENKKKYEMLHLTGTEFSFDVEMEKLPCGMNGALYLSEMPQDGGKSTSRN 160 (400)
T ss_dssp HHTTEEEETTEEEEESEETTEECCCEEEEECTTSSSBCEECCTTCEEEEEEECTTCCTTEEEEEEEECCCTTTTGGGCTT
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 40569953881899857548832621899757877357899338678888633568764322565662167778666788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 n~aGAkYGtGYCDAQC~d~kfInG~aNv~g~GsCC~EmDIwEANs~a~a~TpH~C~~~g~~~C~g~~Cg~~g~CD~~GC~ 240 (400)
T d3ovwa_ 161 SKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRATHIAPHPCSKPGLYGCTGDECGSSGICDKAGCG 240 (400)
T ss_dssp CCCTGGGTCCCCBTTCCBCSEETTEECTTCCEEECCEEEEEEECSSCEEEEEECBSSCSCEEECGGGGSTTSSBCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 76666367722113156243205621346655555641101110455320688656787336457767888860888867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 fNpYR~g~~~FyG~G~~~tVDT~k~fTVVTQF~~~~~G~L~eIrR~YVQ~GkvI~n~~~~~~g~~~~~sit~~fC~~~~~ 320 (400)
T d3ovwa_ 241 WNHNRINVTDFYGRGKQYKVDSTRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDKYCAATGA 320 (400)
T ss_dssp BCGGGGTCTTSEESSTTSSEETTSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 67433488754878987142379973899788708985368998999609999668875677887677346677546786
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~f~~~GGl~~mg~al~rGmVLv~SlWdd~~~~M~WLDsg~~GpC~~tsg~p~~ve~~~p~a~Vt~SNIKfG~I~STy~~ 400 (400)
T d3ovwa_ 321 NEYMRLGGTKQMGDAMSRGMVLAMSVWWSEGDFMAWLDQGVAGPCDATEGDPKNIVKVQPNPEVTFSNIRIGEIGSTSSV 400 (400)
T ss_dssp HHHHHTTHHHHHHHHHHHCEEEEEEEEECTTTTTHHHHBTTSCSBCSSTTSHHHHHHHCSSCEEEEEEEEEESTTCSCCC
T ss_pred CHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCCCC
T ss_conf 42443476889888850886999986847999866204898878888888855651328997799860768577763119
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=30181.94 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~dl~ss~~~~~~~~~~~~~~l~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 1 NDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp CCHHHHHHHHHTTSCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 96178899999877654004409899999998861777989999999997443677179998999997899999995888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~ 160 (400)
T d1tq4a_ 81 NEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 160 (400)
T ss_dssp TTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 67775678999887044553110689707998379854333449999987433226599996588887889999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 161 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 69987999708632101354322011227889999999999999874899897797337764515899999999998399
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~l~~~~~~~i~~K~~~~~~~i~~~a~~a~~~~~iP~p~~~~~~d~~~l~~~l~~y~~~fGlD~~sL~~lA~~ 320 (400)
T d1tq4a_ 241 YKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARD 320 (400)
T ss_dssp GGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998516657999999899999999999999734246886303201329999999999999809998999999999
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~lka~iks~~~~~~~~~~~i~~~l~k~~~~~~~~~G~~~a~~~~f~~~~~l~~~~l~~~aedak~~l~~~~~~n 400 (400)
T d1tq4a_ 321 WEIEVDQVEAMIKSPAVFKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 400 (400)
T ss_dssp SSSCHHHHHHTCSHHHHTSSCCHHHHHHHHHHHHHHHHHHHCCSSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 29989999999708366555567899999999887883052389999999999999999999999999999999986559
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=100.00 E-value=0 Score=30181.32 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~ 80 (400)
T d1ru4a_ 1 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA 80 (400)
T ss_dssp CCCTTCTTTTCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTB
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEECCCEEEEEECCCCCCC
T ss_conf 97532000564447769997998679998722447889999983899599998695516651205753899723777897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~i~i~~~~~~~~vi~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~n~~i~~~~~~g~~~~~~~ 160 (400)
T d1ru4a_ 81 PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG 160 (400)
T ss_dssp CEEEEEGGGCCEEEECCCCTTCCCTTCCSEEECSSCEEEESEEEESCSSCSEEECSSSCEEESCEEESCSSCSEEECTTC
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCC
T ss_conf 29996079972599587623343323431787447479944342067111222023421024526852775117885555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~n~~~~~~~~~~ 240 (400)
T d1ru4a_ 161 SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF 240 (400)
T ss_dssp CSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTC
T ss_pred CCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCC
T ss_conf 42179974677134565442222024689612566166433566426766368824898799775998654101456430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~n~~~~n~~~g~~~~~~~~~~~i~nN~~~~n~~~~~~~~~~~~~~~~~~~nN~~~~~~~ 320 (400)
T d1ru4a_ 241 AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV 320 (400)
T ss_dssp CCCCCSEECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSSEEEEECSCCCTTCCEEEESCEEESSCE
T ss_pred CCCCCEEECCCCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCE
T ss_conf 01373365047776665589877886366553040357664112265687255430343223567650798328834740
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~Spai~aG~~~~~~~~~G~~pDiGAyE~~ 400 (400)
T d1ru4a_ 321 TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN 400 (400)
T ss_dssp EECSEEEESSTTTTSCCCCGGGBSBCCGGGGGCCCCTTCCCCCCSBTCBCTTCTTTTCSCCCTTCCCSTTSCCSSSCCCC
T ss_pred EEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34134323522546730147761674643244656777767768884378998100487877788989986776777588
|
| >d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos taurus), brain [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Carbohydrate phosphatase superfamily: Carbohydrate phosphatase family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like domain: Inositol polyphosphate 1-phosphatase species: Cow (Bos taurus), brain [TaxId: 9913]
Probab=100.00 E-value=0 Score=30179.31 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~l~~~l~~aekAa~iar~~~~~~~l~~~~v~ek~~~~~~~k~~~D~VT~AD~~aq~~I~~~L~~~fP~~~~~IvGEE 80 (400)
T d1inpa_ 1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKIFGEE 80 (400)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSHHHHTCCCCSCCCCTTTTCCCCHHHHHHHHHHHHHHHHHHHHHSTTGGGGEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 96899999999999999999998501687767643136534626799984189999999999999987869999988158
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~IDPIDGT~~ 160 (400)
T d1inpa_ 81 SNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQ 160 (400)
T ss_dssp CSEEECTTSCEEECCCCSSCSCHHHHHHHHTTTCTTHHHHHHHHHTCCCCCCCSSSSSCCCCCCGGGEEEEEEEEECHHH
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 88654544311122024136666666543114542023342023231100011001232356787656299952758420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Fi~G~~~~~v~iaL~~~~~~~v~vlI~lal~~~G~Pv~GvI~~P~~~~~~~~~~~~G~~~~a~~g~Ga~~~~~~~~~~~~ 240 (400)
T d1inpa_ 161 YIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTR 240 (400)
T ss_dssp HHHCCCCCCCBTTBCSSSGGGCEEEEEEEETTTCCEEEEEEEEEEEEECTTTCCEEEEEEEEEESSSEEECCSCCTTSST
T ss_pred HCCCCCCCEEEEEHHCCCCCCCEEEEEEHHEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 12699643255500126665313565201007897898475455446400023678428997437673236766665544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~g~a~~k~~~VA~G~~D~yl~~~~~~~~WD~aA 320 (400)
T d1inpa_ 241 SNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCA 320 (400)
T ss_dssp TTSSCSSCCCCBTTBTTSSSSCCEEEECTTCCSCCCCTTTTCCEEEECCCHHHHHHHHHHTSCSEEEECSSCCBHHHHHH
T ss_pred CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 44322201025675333454047850345389999999747954997558899999996899888995578998788799
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 g~~Il~eaGG~VtD~~G~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~N~~giIA~~~~~~h~~~l~~l~~~l~~~~~~~ 400 (400)
T d1inpa_ 321 AHAILRAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETFLSRLLQHLAPVATHT 400 (400)
T ss_dssp HHHHHHTTTCEEEEHHHHHHSCTTSSCSTTBCCSSCCSTTTTTTCTTBCTTCEEEESCHHHHHHHTCCCTTTCCCCSCCC
T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999978997987999962466544445210014443223553101556878997888999999999997633546789
|
| >d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2, PBP2 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=30176.74 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~y~~~~d~v~~~l~~~~~~~~~~~~~~~~~G~~I~TTlD~~lQ~~ae~~l~~~~~~~~~~~~~a~vvvd~~TG~I 80 (400)
T d2olua2 1 TNQDSEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGL 80 (400)
T ss_dssp CCCSGGGHHHHHHHHHHHTTSTTTTTSCHHHHTTBCCEEEECCCHHHHHHHHHHHHHCSCCSSTTEEEEEEEEETTTCBE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCE
T ss_conf 99877557999999999986128766567786679988995889999999999998534214867528999998899959
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 lAm~~~~~y~~~~~~n~~~~~~~pGStfKp~v~~aaale~g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~G~v~l~~Al~ 160 (400)
T d2olua2 81 VAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALR 160 (400)
T ss_dssp EEEECSTTCCTTTSCCTTTSCEECGGGGHHHHTHHHHHHHTCCCTTBEEECCSSEEETTEEECCTTSCCCCEEEHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997888883233321000003666556178899986458721110013334421111013366655553334322355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~S~N~~~v~l~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~lg~g~~~vtplqlA~aya~iANgG~~~~P~~v~~i~~ 240 (400)
T d2olua2 161 QSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVT 240 (400)
T ss_dssp TTCHHHHHHHHHHHHHHTCTTHHHHHHHHTTCCCSSCCCHHHHTTCTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEEC
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCEEEEEEECCCCCC
T ss_conf 66511123200010024567889999987088731121100000123456778886400100005964787674011356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~g~~v~~~~~~~~v~s~~~a~~l~~~l~~vv~~~Gt~~~~~~~g~~vagKTGTa~~~~~~~~~~~~~~~~~~daWFvG~ 320 (400)
T d2olua2 241 RDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGF 320 (400)
T ss_dssp TTSCEEECCCCEEECSCHHHHHHHHHHHHGGGSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 43232222222222113789999976521433541000111357814777611144576576544566687640799983
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~P~~~~~VwvG~d~~~~~~~~~~~~~~~~~~~a~i~~~~m~~~~~~~~~~f~~P~~v~~~~p~~~~~~~~~~~~~~~~~~ 400 (400)
T d2olua2 321 TPQYTMSVWMGFSKVKQYGENSFVGHSQQEYPQFLYENVMSKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTTNRSTH 400 (400)
T ss_dssp CSSEEEEEEEEESSCCGGGTTSEESHHHHTHHHHHHHHHHHHHSCCSCCCCCCCTTEESCTTCCEETTCCCSSBCCCCCC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 69969999984688875676765676433579999999999975689666999998766777554789999998888889
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=0 Score=30177.39 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~viYe~~v~~f~~~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dl 80 (400)
T d1eh9a3 1 FNNETFLKKEDLIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF 80 (400)
T ss_dssp CCSCCSCCSSSCCEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHH
T ss_pred CCCCCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99877688768599998312307899999999875899975998899687676889999997877778858221999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 k~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR 160 (400)
T d1eh9a3 81 RKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFR 160 (400)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999997637713542244642577850443100211234545564435565556079999999999887524663688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T d1eh9a3 161 LDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFG 240 (400)
T ss_dssp ETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHHHSCCCSGGGGGCC
T ss_pred EECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 60434415114565589999987533222110100468442564553352000212665310467665033210145444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGi 320 (400)
T d1eh9a3 241 NLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYI 320 (400)
T ss_dssp SHHHHHHHHHSSCSCSSEEETTTTEEECCCCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 35789987543211221478999874465233304400443122046553356401267776656778999999848997
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 P~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~lRk~~pv~ 400 (400)
T d1eh9a3 321 PMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSIA 400 (400)
T ss_dssp CEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred CEEECCHHHCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 78977853288898875010266877666676405766789876552346556677657899999999999999678699
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=100.00 E-value=0 Score=30104.78 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~p~~~~~~~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~ 80 (399)
T d1oyaa_ 1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAG 80 (399)
T ss_dssp CBCTTCCCCCCTTSGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCC
T ss_conf 97455888889999999973289988637668777667757899897987999999999972890799964377776547
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~l~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~ 160 (399)
T d1oyaa_ 81 GYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHS 160 (399)
T ss_dssp CCTTSCBSSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 78998745787998888699999975201221233220234574211334445667543566777777666567887520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~I 240 (399)
T d1oyaa_ 161 LTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKV 240 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 15677888888999999999980975676124377789986413035665224765665457799998754340222574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 gvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PV 320 (399)
T d1oyaa_ 241 GLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPV 320 (399)
T ss_dssp EEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCE
T ss_pred EEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 47853022025667741000577899999889874324543441122146677755454432111268999999829988
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 i~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G~~ln~~d~~~~~~~~~~gyt~~p~~~~~~~~~~~~~ 399 (399)
T d1oyaa_ 321 IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK 399 (399)
T ss_dssp EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSSSTTTTCCCCHHHHHHTTSSCC
T ss_pred EEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 9978989869999999759981848879999791299999729998999653267899988084845499997489999
|
| >d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-NOR, nitric reductase species: Fungus (Fusarium oxysporum) [TaxId: 5507]
Probab=100.00 E-value=0 Score=30104.68 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~p~~~~~~~dP~~~~~~Lr~~gPv~~~~~~~g~~~~vvt~~~dv~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1jfba_ 1 APSFPFSRASGPEPPAEFAKLRATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQAAKAKP 80 (399)
T ss_dssp CCBSSCCCSSTTSCCTHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899898766596899999996399688763789569997699999999769763547654567654544211012477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 160 (399)
T d1jfba_ 81 TFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLLGVPFNDL 160 (399)
T ss_dssp CGGGCCTTHHHHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 32226869999987400764566532111026789899887454321244431024566655667788887651000036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~~~~~~~~~~~~~~~~~~ei~~~~~~~~~ag~~tt 240 (399)
T d1jfba_ 161 EYLTQQNAIRTNGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATM 240 (399)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 78888766531000027899999999999999999998630245544322222223577762112212334322002015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~l~~~~~~L~~~pe~~~~L~~e~~~~~~~~~e~lr~~~~~~~~~~R~~~~~~~~~g~~ip~G~~V~~~~~~~~~dp~~ 320 (399)
T d1jfba_ 241 VNMIALGVATLAQHPDQLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEV 320 (399)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCSCCSCCEEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 66999999998456589999741345321101101232223433333222013334577676653211114451578422
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~dP~~F~PeR~~~~~~~lpFG~G~r~C~G~~lA~~el~~~l~~Ll~rfp~~~l~~~~~~~~~~~~~~~~g~~~lpv~~ 399 (399)
T d1jfba_ 321 FENPDEFNMNRKWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVIF 399 (399)
T ss_dssp SSSTTSCCTTCCCCSSCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCEECCTTSCSCEEECEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCCEEEC
T ss_conf 7996445868889999886889997368069999999999999999967967899887776467787777871351039
|
| >d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp158a2 species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30103.30 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~p~~~~~~~~~~~~~~~~p~~~~lr~~gPv~~~~~~~g~~~~wvvt~~e~v~~vl~d~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1s1fa_ 1 QAVPPVRDWPAVDLPGSDFDPVLTELMREGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQVTRLAPHFI 80 (399)
T ss_dssp CCSCCEEECCCCCCCTTCCCHHHHHHHHHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTTEESTTTTTTTBCBSSSSCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899899887789999989999999971996898416886588996599999999769764456555555444561001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~Dg~~H~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~~~~~ 160 (399)
T d1s1fa_ 81 PARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPADLTEAVLSPFPIAVICELMGVPATD 160 (399)
T ss_dssp SCTTSGGGCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTHHHHHHHHHHHTCCGGG
T ss_pred CCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHEEHHCCCCCHHH
T ss_conf 33452010586778999987484347412678999999999998620234565032024554433430001104883455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~tT~ 240 (399)
T d1s1fa_ 161 RHSMHTWTQLILSSSHGAEVSERAKNEMNAYFSDLIGLRSDSAGEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVT 240 (399)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHHHTSCCSCCCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 44566677887512232046788888899999999987630223201232001256655507777777888751342222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~~l~~l~~~p~~~~~~~~~~~~~~~~~~e~~r~~p~~~~~~~~R~~~~~~~l~G~~ip~Gt~V~~~~~~~~rdp~~ 320 (399)
T d1s1fa_ 241 NNSGQMFHLLLSRPELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEV 320 (399)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCCBSSCCCCEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEECCCCCCCCCCHHH
T ss_conf 20222122343085155431232013532122211246632223432100002540533533897501233334668110
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~~~~rg~~~lpv~~~~ 399 (399)
T d1s1fa_ 321 FPDPDRIDFERSPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWHA 399 (399)
T ss_dssp SSSTTSCCTTC--CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHSTTCEESSCGGGSCBCSSCSBCCBSCCEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEEEC
T ss_conf 6995444889999997777988617815999999999999999997798788889666525168744287047899849
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=100.00 E-value=0 Score=30101.35 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~syRIPsLv~~~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~ 80 (399)
T d2ah2a2 1 LAPGSSRVELFKRQSSKVPFEKDGKVTERVVHSFRLPALVNVDGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQ 80 (399)
T ss_dssp CCTTCEEEEEECTTTCEEEEEETTEEEEEECSEEEEEEEEEETTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEE
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf 98886434203788765775568988985699991308999899999999179888998720378998532788578762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~v~~~~~~~~~~~~dP~~v~d~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~ 160 (399)
T d2ah2a2 81 IAIKNSRASSVSRVVDPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLK 160 (399)
T ss_dssp EEECCCCSSTTCEEEEEEEEEETTEEEEEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECG
T ss_pred EEEECCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89724777776666688599849969999997658886221125788876258977998646798366773258832056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~gi~~~~GrLv~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~~~~~~~~~v~~~dG~l 240 (399)
T d2ah2a2 161 EFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRSAFGCSEPVALEWEGKL 240 (399)
T ss_dssp GGSCSEETTEEEEEEEECSEECEECTTSCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCCCCTTCEEEEEEEETTEE
T ss_pred CCCCCCCCCCCCCEECCCCCCEEEECCCCEECCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCEE
T ss_conf 53465335753100526775303304863731337534887468899995899851683465589875566300358818
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ll~~R~~~g~r~v~~S~DgG~TW~~~~~~~~~v~~~~~~~~~~~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~ 320 (399)
T d2ah2a2 241 IINTRVDYRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLW 320 (399)
T ss_dssp EEEEECTTSCCCEEEESSTTSSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 99876278740699974898625433454433437776667874453135741389729999798886454435642899
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~Sdd~g~~w~~~~~i~~g~saYS~L~~~dg~ig~lYE~~~~~~~~i~f~rlT~el~~ik~v~~~w~~~d~~~~~~~~~~ 399 (399)
T d2ah2a2 321 LTDNQRIYNVGQVSIGDENSAYSSVLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKNWDSHLSSICTPA 399 (399)
T ss_dssp EESSSCEEEEEECSCTTCBCCCEEEEEETTEEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred EECCCCCCCCCCEEECCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8579984214722855898542576758998999998589970059983687899999999998987547874478899
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30100.59 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~el~~~l~~~~~~~P~vI~~~gti~~~~~~~~~~~~~~~~~~ 80 (399)
T d1bn8a_ 1 ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKD 80 (399)
T ss_dssp CCGGGCCCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHHHHHHHCCTTCCSCEEEEECSEEESSBCTTCCBCCHHHHCC
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
T ss_conf 95211113688750504898677887787746830889999999862369986699986679425665654444454334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~a~NVIirnl~i~ 160 (399)
T d1bn8a_ 81 PEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQ 160 (399)
T ss_dssp TTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEECSEEEEEESCEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCEEEEECCEEEEECEEEE
T ss_conf 33353322234574342034666654322111021435522785279864984589708954579983746999592997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n 240 (399)
T d1bn8a_ 161 DAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240 (399)
T ss_dssp CCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECC
T ss_conf 17466666655666556767778658986686589988660267754444544456653333451653146404995774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~ 320 (399)
T d1bn8a_ 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYA 320 (399)
T ss_dssp EEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEECCCCCCEEEE
T ss_conf 15687524675678876434687359999327247645686303557888851767787655410002212456746999
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 EgN~F~~~~~~~~~~~~~~~~g~~~~~~gn~~~g~~~~~~~~~~~~~~~~~~p~y~y~~~~A~~v~~~V~a~AGAGkl~ 399 (399)
T d1bn8a_ 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN 399 (399)
T ss_dssp ESCEEECTTCCSGGGEEECTTCCBCEEESCEETTEECCHHHHTTCBSCCSCCCCSCCCCCCHHHHHHHHHHHCSTTSCC
T ss_pred EEEEEECCCCCCCCEECCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 8148878888655230102688459607847648453676676746565323456533479999998765258976159
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=30036.03 Aligned_cols=1 Identities=0% Similarity=1.965 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LE 80 (398)
T d1qgna_ 1 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE 80 (398)
T ss_dssp -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 98534579976579968976898888899618830777578089899998743776796443998868999999999982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~E 160 (398)
T d1qgna_ 81 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE 160 (398)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECC
T ss_conf 99348896486468888876303455432322221011333210343456643222442210233432103563179705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~ 240 (398)
T d1qgna_ 161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 240 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECCCCCCCHHHCCCEEEEECHHHCCCCCCEEEHHHCCHHHHHHHHHHH
T ss_conf 74300024321799999886449879961502144557722317989998100015765311100100013343221111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~ 320 (398)
T d1qgna_ 241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 320 (398)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEEC
T ss_conf 03677748979999998333477889999889999999999739882005788888993365554325898720466643
Q ss_pred -----------------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 321 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 398 (398)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999999972885626268788761121750113100899999965989297999761089999999999998429
|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30034.31 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~kltl~d~~l~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvil~SH~GRP~g~~~~~~Sl~~~~~~L~ 80 (398)
T d1vpea_ 1 EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLS 80 (398)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98762004847998999931477533995887289999999999999789989998378999998887668799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~l~~~v~f~~d~~~~~~~~~~~~l~~g~i~lLEN~Rf~~~E~~n~~~f~k~La~l~DiyVnDAFg~sHR~haS~~gi~~ 160 (398)
T d1vpea_ 81 ELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQ 160 (398)
T ss_dssp HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred HHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEECHHH
T ss_conf 63164079850368658899861578876897244442432333247799998605560342543566515875011345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~lps~aG~l~ekEi~~L~k~l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~ 240 (398)
T d1vpea_ 161 FIPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED 240 (398)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 46101147778789876422101467517996157635079999988875022232423789999974997788753412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~i~~~a~~~~~~i~lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G 320 (398)
T d1vpea_ 241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG 320 (398)
T ss_dssp GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 56789999987665288511001012110003566520213124798765321366500899998745576799974612
Q ss_pred -----------------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~t~~~~~sIiGGGdT~aai~~~g~~~~f~hvSTGGGA~Le~L~G~~LPgi~aL~~~~a 398 (398)
T d1vpea_ 321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA 398 (398)
T ss_dssp CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 011662417999999999987238998999178999999972986796089677899999987999718999863549
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30027.33 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~M~~f~f~~p~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~ 80 (398)
T d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK 80 (398)
T ss_dssp CCCCCCEEECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHH
T ss_pred CCCCCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 99888728758986998549999999999965998489998974787731999999999865991999867159989899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~gtgse~t~~avi~~~~ 160 (398)
T d1vlja_ 81 VHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEK 160 (398)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGSSEEEEEETT
T ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEECC
T ss_conf 99876411456676688448863112788889886414556776436644367787335414654432113552132001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~~ 240 (398)
T d1vlja_ 161 TKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD 240 (398)
T ss_dssp TTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCEEEECCCCCEEEEEEHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 25420232012443169985564077740001131266998866531021256434577899988740233664038987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~ar~~l~~a~~~a~~~~~~~~~~~~~g~~H~l~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~l~~~~~ 320 (398)
T d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEG 320 (398)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
T ss_conf 99987667789988888876530576402111112113455877022024016789999987574689999999738899
Q ss_pred -----------------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~e~~~~~~~~l~~~~~~lglP~~L~elGi~~~~i~~ia~~a~~~~~~~~npr~~~~~~~~~l~~e~i~~Il~~A~~ 398 (398)
T d1vlja_ 321 EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 819999999999999999859999989939999999999999996766427987676213334899999999999659
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=0 Score=29958.15 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~d~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~ 80 (397)
T d1y4ia1 1 SDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEA 80 (397)
T ss_dssp CCGGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99888981100376798888789992188028888650888999876347768966658988789999999999849962
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP 160 (397)
T d1y4ia1 81 GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANP 160 (397)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTT
T ss_pred CEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 11106778888887763168998654301012331035431367785575414899989999865877738980487522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~ 240 (397)
T d1y4ia1 161 TLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI 240 (397)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT
T ss_pred CEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 11003307899886047852870275227154763202897899851351078741465215787889999999999967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~ 320 (397)
T d1y4ia1 241 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL 320 (397)
T ss_dssp TCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH
T ss_conf 49858989999997471769999999999999999999748996767488878996522223446778759999956999
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a~~ 397 (397)
T d1y4ia1 321 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF 397 (397)
T ss_dssp HHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999997289362305637432032276312654589999997598929799976119999999999999987219
|
| >d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29956.55 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~r~ttfGESHG~aig~vIdG~PaG~~id~~~i~~~L~RRrpG~~~~~t~R~E~D~veilSGv~~g~TtG~PI~~~I 80 (397)
T d1q1la_ 1 SLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFI 80 (397)
T ss_dssp CCSSCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCEEEEE
T ss_conf 96569996034578984489980508488848999999985689899999866799984799145158980678559999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~N~D~~~~~y~~~~~~~~~~~~~~~~~pRPGHAD~~~~~KYg~~d~r~gggRsSaReTa~rVaAGaIAk~~L~~~gI~v~ 160 (397)
T d1q1la_ 81 RNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEFGIKIG 160 (397)
T ss_dssp ECSCC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 87876654543322356205554440488887536778874576666766514788999999999999999998498788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 s~v~~IG~i~~~~~~d~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~~r~~gDSvGG~ve~~~~gvP~GLGe 240 (397)
T d1q1la_ 161 SFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGS 240 (397)
T ss_dssp EEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSC
T ss_pred EEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
T ss_conf 89999866752434555445780233556887650750357656999999999999856886440699999658887667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 pv~~ddkLda~LA~AlmSIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGilGGISnG~pI~~rva~K 320 (397)
T d1q1la_ 241 HIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMK 320 (397)
T ss_dssp SSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 73444442489999875040144301265166776630235565313478873355667764245765886089999978
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 P~sSI~~~q~Tvd~~~~e~~~~~~gRhDpcivpra~~VvEAm~alvlaD~~L~k~g~d~~~~~~~~~~~y~~~~~~~ 397 (397)
T d1q1la_ 321 PIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKSF 397 (397)
T ss_dssp CCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 86446775636237898777502799898578763389999999999999999857984999999999999997529
|
| >d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29953.51 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~v~s~~v~y~~~~i~~~y~y~~t~v~~~~~~~~v~p~~~~~~f~t~~~vpklGVmLVG~GGnngTT~~aGv~Anr~g 80 (397)
T d1vkoa1 1 KRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYA 80 (397)
T ss_dssp CCCCCCCTTEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSCCCEEEEEETTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCEEECCCEEEEEEEECCEEEEEECCCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 94488399738737558999886104999817935998767778998416688258998438840888999999998758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 L~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGWDI~~~nL~eAa~rA~VLd~~ll~ 160 (397)
T d1vkoa1 81 MTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQE 160 (397)
T ss_dssp CEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEECSSCCCTTHHHHHHTCSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHHH
T ss_conf 97546677405886351443033575135789873356376517889821168944469999889999875999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~~~L~~i~P~psv~~pdfia~nq~~ra~nv~~g~~k~e~ve~Ir~DIr~Fk~~~~ldrVVVlwtAsTEr~~~~~~~v~ 240 (397)
T d1vkoa1 161 KLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN 240 (397)
T ss_dssp HHHHHHTTCCCBCBCCCGGGSCGGGGGGCCSBCCSSCHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCCCCCCCCCTTTT
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 99999860865542107277775135200151358889999999999999999974997699998158777777761200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~t~e~l~~ai~~n~~eIsPS~lYA~AAi~eG~pyiNgsPq~t~vPal~eLA~~~~v~iaG~DfKTLLaspliLDl~ll~e 320 (397)
T d1vkoa1 241 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSLLASPLIYDLAILTE 320 (397)
T ss_dssp SSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTCEEEECSSSCCCCHHHHHHHHHHTCCEECSCBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 16999999986699878859999999997599623699755666459999986199665257898755188886999996
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 l~~Ri~~k~~~~~~~~~~Vls~LS~~~KaPl~~~g~~~vn~l~kQr~~l~N~lR~~~Gl~p~~~m~lEy~~~lp~~k 397 (397)
T d1vkoa1 321 LASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAK 397 (397)
T ss_dssp HHTTEEEESSSSEECCCSBCGGGGGGBSSCCCSTTSCCCCCHHHHHHHHHHHHHHHHTCCCCTTSCGGGTSCCCCCC
T ss_pred HHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
T ss_conf 64178862254004752077776665268888999866028899999999999998299977754303310055579
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29952.58 Aligned_cols=1 Identities=0% Similarity=1.466 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96557778999488999997268998948850787738889988868999999999717666787898555899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~ 160 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred HHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHCCCEEEEEECCHHHCCCCCH
T ss_conf 99852259767767689845760377888988776533799833662667666279999869979997465142256420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i 240 (397)
T d3tata_ 161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL 240 (397)
T ss_dssp HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 77899864066552899826899997841788999999999853694699415531001697533114554442277359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d3tata_ 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320 (397)
T ss_dssp ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98447665333576512110011678999988888887752256666078999999860788889999988889999999
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999848998648876898417841919999999999599995798879852599889999999999869
|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29949.79 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~ 80 (397)
T d1vjva_ 1 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 80 (397)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98789988888884079999999998089999999817741011346654322589999999999999985898714879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (397)
T d1vjva_ 81 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQ 160 (397)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHHHHTTTCEEEEEEEEETTEEEEEEEECCCEESCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCCCCCCEECCEEEEEEE
T ss_conf 99999999704322465566634126689999999999987733213554155120058862336644213540211233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~ 240 (397)
T d1vjva_ 161 CHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVA 240 (397)
T ss_dssp ECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred EEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEEECC
T ss_conf 46326412202778764366540534555787523220423238952377766654214556110327625267077525
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d1vjva_ 241 DMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEK 320 (397)
T ss_dssp GGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCHHCCCHHHHCCCCCCCCCCC
T ss_conf 32110233320015676644331111477777640468766532234200011000023100110001000135632123
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~~ 397 (397)
T d1vjva_ 321 GENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 397 (397)
T ss_dssp TBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 67899888999999996599999682899989999898999989877799889998750899888189999996489
|
| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Bacterial glucoamylase, C-terminal domain species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
Probab=100.00 E-value=0 Score=29946.72 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~ 80 (397)
T d1lf6a1 1 NNFNGKANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDY 80 (397)
T ss_dssp CCTTTTCCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99873799999999999998047789964897677886655689889997057272599999999985997999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lWEe~~g~~~~t 160 (397)
T d1lf6a1 81 LAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIGPKTGQERWEEIGGYSPAT 160 (397)
T ss_dssp HHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHCSSBSSCTTSSCCBBCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 99995325877887886798645677776699999999999753406899999999999838887655454457864203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~aL~~~a~la~~~g~~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 240 (397)
T d1lf6a1 161 MAAEVAGLTCAAYIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYD 240 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67799999999999886088157999999999999999983428356610243200146666753110001245434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~lDasll~~~~~g~~~~~d~~~~~tl~~i~~~l~~~~g~~~~~~RY~~D~y~~~~~~~~~~~~~~g~pW~i~T~~~a 320 (397)
T d1lf6a1 241 QKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHGAGKGRLWPLLTGERG 320 (397)
T ss_dssp GGGCCCGGGGHHHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECSSTTCCCSCSBTTBCCSSSSCCCBBHHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 67776778763110378788878999999999987166777666654454555343577677667868754999999999
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~~~~g~~A~~~l~~~~~~~~~~G~l~E~~d~~tG~~~g~a~plaWS~A~~i~~~~~l~~~~~~~~~~~~~~~~~~ 397 (397)
T d1lf6a1 321 MYEIAAGKDATPYVKAMEKFANEGGIISEQVWEDTGLPTDSASPLNWAHAEYVILFASNIEHKVLDMPDIVYKRYVA 397 (397)
T ss_dssp HHHHHTTCCCHHHHHHHHHHSCTTSCCCSCBCTTTCCBCSSCSSCHHHHHHHHHHHHHHHHTSCTTSCHHHHHHHTC
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf 99997117999999999976688886350046989984899954788999999999998649976666788887309
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29874.74 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~ 80 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 96445547998599999998466899968830787658889989988999999999618988988997677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 99861698666442013213417899999999886315650899816888430599998599067245434456542210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T d2q7wa1 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 57778988515838999568849949336889987788877048819998615354346986674286654562344211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d2q7wa1 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR 320 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33564434445777442446606899999865556665504445787899999999853913678999999999999999
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999828988741564897179951879999999999689997799879952898788999999999869
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=0 Score=29877.90 Aligned_cols=1 Identities=0% Similarity=-2.187 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~ 80 (396)
T d2bwna1 1 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSG 80 (396)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96799999999999859986342012246788740474027998289998852102768999999999999999589864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H 160 (396)
T d2bwna1 81 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH 160 (396)
T ss_dssp SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHCCCCCCEEEEC
T ss_conf 55244587449999999999974998515540113778889998760367984310534223000143046667337632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 nd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di 240 (396)
T d2bwna1 161 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDI 240 (396)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHCCCCEEEEE
T ss_conf 36877666776405667616999752367644466176899865424066501210110221666662233187312124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~ 320 (396)
T d2bwna1 241 FNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 320 (396)
T ss_dssp EEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 53124655533554353268999998751213453136757778899999997631207899999999999999889866
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 g~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 321 GMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp TCCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9986899999799996999999999999999689899987899689997269998576699999999999999859
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29870.97 Aligned_cols=1 Identities=0% Similarity=-0.361 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~ 80 (396)
T d1m7xa3 1 VVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLY 80 (396)
T ss_dssp CCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 96641024578889986799772571477899998879999999899999982998899698887899899896867587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (396)
T d1m7xa3 81 APTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFL 160 (396)
T ss_dssp EECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 71824289899999999985420333201143446786555554567863235678778778877754467772358999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 240 (396)
T d1m7xa3 161 VGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV 240 (396)
T ss_dssp HHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTT
T ss_pred HHHHHHHHHHHCCCCEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999889985786323311423122010011111111103566550289999999999863479946997521787532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d1m7xa3 241 SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK 320 (396)
T ss_dssp TBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 22000354320334211022344430000013444422223100111055521222344322457774223688877899
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~paL~~~~~~ 396 (396)
T d1m7xa3 321 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFD 396 (396)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTSCTTS
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 9999999999998178547056512487899998887782111476534279999999999999739876460789
|
| >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Phase 1 flagellin superfamily: Phase 1 flagellin family: Phase 1 flagellin domain: Phase 1 flagellin species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29805.50 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~ 80 (395)
T d1io1a_ 1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 80 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 97138899998999999999999999999999999999999850578999999999999999999999999737028802
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Ll~Gs~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d1io1a_ 81 VLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQK 160 (395)
T ss_dssp TTTSCEEEEEECSSSTTCEEEEEECCCSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBGGGSTTTCGGGCSSEEE
T ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23556725897247875058997123310001121100222322333211122222211013443222112232232100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
T d1io1a_ 161 IDGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAAL 240 (395)
T ss_dssp ECSSEEEETTTTEEEEEEEEETCSSCCEEEEEEECTTTCBEEESTTCCSCCTTSSCTTCCEEESEEEEEGGGCHHHHHHH
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01221111101110000011222221000110000133210011222111223444333210001000000120011100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (395)
T d1io1a_ 241 TAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSI 320 (395)
T ss_dssp HHTTCCSCEEEEEEEEECTTSCEEEEEEEEEETTEEEEEEECTTSCEEECBCCBBCSSSSCBCCBEEEESTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 00012233222221113421100145532112221001101222332123322222200233102222234341035412
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~v~t~~~A~~Al~~iD~Ai~~v~~~Ra~lGA~qNRle~ti~NL~~~~~N~~aar 395 (395)
T d1io1a_ 321 GGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTSAR 395 (395)
T ss_dssp TTEEEEHHHHTTCBTTTSCCCCCCCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 551021123455332222102466488899999999999999999998755698868999998999999998519
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29800.93 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~ 80 (395)
T d2bfda1 1 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISF 80 (395)
T ss_dssp CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99899987756655455787667888806778999999884236998999999999999999999999999996897012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg 160 (395)
T d2bfda1 81 YMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 160 (395)
T ss_dssp CCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 50898869999999997697780134445367244431789999998740035764456654443323346311344334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~ 240 (395)
T d2bfda1 161 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPG 240 (395)
T ss_dssp THHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGG
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf 55107888888765037654443114788754113889999986237743799986133422200210011168876310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~ 320 (395)
T d2bfda1 241 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLS 320 (395)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 35541688337389888888876433312687537887663588887767732466889999988549899999999998
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~~~ 395 (395)
T d2bfda1 321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 395 (395)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGBCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 799999999999999999999999999858997989998450159997799999999999996725388455349
|
| >d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp121 monooxygenase (P450 Mt2) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=29792.36 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~LR~~~Pv~~~~~~~g~~~wvvt~~~dv~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (395)
T d1n40a_ 1 TATVLLEVPFSARGDRIPDAVAELRTREPIRKVRTITGAEAWLVSSYALCTQVLEDRRFSMKETAAAGAPRLNALTVPPE 80 (395)
T ss_dssp -CCCCCBSCCCCCSSSCCHHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTTEESGGGGSTTCCCSSCCSSCGG
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99877789988777677399999995299789874899769997799999999769774768776677654444447817
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~d~~~H~~~R~~~~~~Fsp~~~~~~~~i~~~~~~ll~~l~~~g~~~Dlv~~~a~~l~~~vi~~llG~p~~d~~~~~ 160 (395)
T d1n40a_ 81 VVNNMGNIADAGLRKAVMKAITPKAPGLEQFLRDTANSLLDNLITEGAPADLRNDFADPLATALHCKVLGIPQEDGPKLF 160 (395)
T ss_dssp GGGHHHHHHHTTCHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHCSCEETTTTTHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76537871579999999987309999988789999999862033356664418888777655457777522345677777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ls~~el~~~~~~l~~AG~eTTa~~ 240 (395)
T d1n40a_ 161 RSLSIAFMSSADPIPAAKINWDRDIEYMAGILENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSF 240 (395)
T ss_dssp HTHHHHTBCCSSCCHHHHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 65433333200136999999999999878899875103677777666430566665540035678999875200012335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~~~l~~L~~~P~~~~~l~~e~~~~~~~i~E~lRl~~p~~~~~~R~a~~d~~i~G~~ip~G~~V~~~~~~a~rDp~~f~d 320 (395)
T d1n40a_ 241 LTTALISLIQRPQLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPN 320 (395)
T ss_dssp HHHHHHHHHTCHHHHHHHHHCGGGHHHHHHHHHHTCCCBCSCEEEEESSCEEETTEEECTTCEEEECHHHHHTCTTTSSS
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 67888877629630001110123433323320134554543212210232112234565542022201212456200898
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 P~~F~p~R~~~~~~l~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~~r~~~~LpV~~ 395 (395)
T d1n40a_ 321 PGSIELDRPNPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVLW 395 (395)
T ss_dssp TTSCCTTCSSTTCSSTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSBSBCCBSCCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCEEEEEEC
T ss_conf 021387899998877779988369149999999999999999967997888885667461686333871216569
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=100.00 E-value=0 Score=29797.76 Aligned_cols=1 Identities=0% Similarity=-1.690 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~ 80 (395)
T d2py6a1 1 DPLAMNDSFLAAADALAVDPMFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY 80 (395)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHGGGCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEET
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEC
T ss_conf 94116778887788754472320868899999850897528997686458999999987794699996684232286533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d2py6a1 81 GLPIISTDRFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAF 160 (395)
T ss_dssp TEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHHHHHHHHTTCCEEEHHHHHHHTTCTTSSCGGGSCCHHHHHHTHHHH
T ss_pred CEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55751678864344226857999813641122589999876598400157778873774234402444589999869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~L~D~~S~~~~~~~l~~rl~~d~~~~~~~~~~~~~~YF~~~i~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~k 240 (395)
T d2py6a1 161 QTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFER 240 (395)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHCCTHHHHHHCCCGGGTTTSSSSCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf 99998713776599999999998639989985135758776543404676799899997758778899999966899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 V~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~~~~~s~~~~~~~~~~~~~~V~~~tLD~l~~~ 320 (395)
T d2py6a1 241 VWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDD 320 (395)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC--------------------CEEEEECHHHHCSS
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCC
T ss_conf 99993987999999999985622255543999998961661389985179865310135667775189998788995378
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~id~IKIDVEG~E~~VLkGa~~~Lk~~kPiI~IEiyh~~~d~~~i~~~L~~l~~~Y~~~lR~h~~~~~d~vlY~~ 395 (395)
T d2py6a1 321 APTFIKMDIEGSELSALKGARRAISEHKPKLAISAYHRSTDLLDLTNYILSIRPDYQIGLRHHTPDRWDTCLYFY 395 (395)
T ss_dssp CCSEEEECCSSCHHHHHHTTHHHHHHHCCEEEEECCSSTTHHHHHHHHHHHHCTTCCEEEEECSSSSCCEEEEEC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEC
T ss_conf 998899968998799999789999867987999995257659999999998636974999668987501489859
|
| >d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Aldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29796.98 Aligned_cols=1 Identities=0% Similarity=0.569 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 vad~~~f~~~~~~~~~~~~~~p~~~~~l~~~GT~~~~~~~~~~g~lP~~Nf~~g~~~~a~~isge~~~~~~~~r~~~C~~ 80 (395)
T d1aora1 1 IADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYA 80 (395)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSHHHHTHHHHHCGGGHHHHHHHTTCCCBTTTTBSCCTTGGGGSHHHHHHHTEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 98989999999999999982970415321109299999998769877488888889971542899999986146999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Cpi~C~~~~~~~~~~~~~gpEYEt~~a~Gs~~Gi~d~~~v~~~n~l~d~~GlDtIs~G~~ia~amE~~e~Gll~~e~~gd 160 (395)
T d1aora1 81 CPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGD 160 (395)
T ss_dssp CSSCCEEEEEETTTEEEECCCHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCHHHHTT
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 98674834770688753687730110300124899999999999999996813887868999999999779887242066
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~l~wGd~e~~~~li~~IA~r~g~G~~LA~G~~~aae~~G~~~~a~~vkg~e~p~~dpr~~~g~~l~yat~~~G~~H~~ 240 (395)
T d1aora1 161 APPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIK 240 (395)
T ss_dssp SCCCCTTCTHHHHHHHHHHHTTCTTHHHHTTCHHHHHHHTTCGGGCCEETTEECCSCCGGGCHHHHHHHHHCTTSSCSGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCHHHH
T ss_conf 77879999999999999998467417888223999999959823546744777443377653132311001577640233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~e~~g~~~~~dp~~~~e~k~~~~~~~q~~~~~~dslg~C~F~~~~~~~~~~~~~~~avTG~~~t~e~l~~~geRi 320 (395)
T d1aora1 241 NYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERI 320 (395)
T ss_dssp GCTHHHHTTCSSSCCCTTCCSHHHHHHHHHHHHHHHHHHHHTCCGGGGTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 22244754389765785514379999999999999996013434413667999999999997538899999999999999
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~l~R~fN~r~G~~~~~dD~lP~r~~~ep~~~G~~kg~~~~~e~~l~~YY~~rGWd~~G~Pt~e~L~~LgL~d~~ 395 (395)
T d1aora1 321 WNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 395 (395)
T ss_dssp HHHHHHHHHHHTCCHHHHSCCCHHHHHSCCCSSTTTTCCCCHHHHHHHHHHHHTCCTTSCCCHHHHHHHTCGGGC
T ss_pred HHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 999999999747983654569887724888878777876789999999999839898898799999976891339
|
| >d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Choline kinase domain: Choline kinase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29795.20 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllR 80 (395)
T d1nw1a_ 1 GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLR 80 (395)
T ss_dssp CHHHHHTTCCTTCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 94445045654566543615899999999986711026899301699991785334348999688775445789817999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~~~~~ 160 (395)
T d1nw1a_ 81 VYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEP 160 (395)
T ss_dssp EECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSS
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 65996116589999999999975799980899818956999734554883331465555999999999850332236675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~ 240 (395)
T d1nw1a_ 161 DYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNI 240 (395)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCC
T ss_conf 42888999999765431237776434555302444499999999999987430369846885578856376536433222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lID~EYa~~n~~~fDian~f~E~~~~y~~~~~~~~~~~~~~~ps~e~~~~fi~ 320 (395)
T d1nw1a_ 241 RMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFL 320 (395)
T ss_dssp ------------------------CCEECCCTTCEEEEHHHHHHHHHHHTTEECCCSSTTSCEECGGGSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34553100023444322356888827998542367885066599999997055677666532134234939999999999
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~Yl~~~~~~~~~~~~~~~~~l~~~v~~~~~~s~l~W~lW~~iq~~~~~~~fDy~~Y~~~Rl~~y~~~k~~l~~~~ 395 (395)
T d1nw1a_ 321 NYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA 395 (395)
T ss_dssp HHHHHHTCSCGGGHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTHHHHHTTC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999873666510679999999999999998857899999999646448998999999999999999999887119
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29792.45 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~s~r~~~~~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 1 SIRASKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCCCCHHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 96300040357478999999999999779970899899999789999799999999999638898899978999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 160 (395)
T d1xi9a_ 81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 160 (395)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 86432045231212232322220132100121047999899838833331000320597799984332235431278899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 240 (395)
T d1xi9a_ 161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF 240 (395)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHCC
T ss_conf 76402650899669989754101179999998555425855774121000132222345032078888899958622142
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (395)
T d1xi9a_ 241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST 320 (395)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred CCHHHCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 54010076685187999999999988864378784799999999986087999999999999999999999986799411
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~er 395 (395)
T d1xi9a_ 321 TKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 395 (395)
T ss_dssp CCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 589855898178888899999999999999699999847332889979799996489999999999999999549
|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29798.93 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~g~~~p~~~~w~~~~~~~~~~~~~~~~A~~~A~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAILvR~~~~~~ 80 (395)
T d1w36b2 1 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 80 (395)
T ss_dssp TEEEEETTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHH
T ss_pred CCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf 95367889768700210389876551309999999999999999971203653004677767788143899983766699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~i~~aL~~~gIP~v~~~~~~~l~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~gl~~~~l~~~~~~~~~~~~~~~~~ 160 (395)
T d1w36b2 81 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 160 (395)
T ss_dssp HHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999998599859935875432569999999999977455647889998708556999999998751267799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 240 (395)
T d1w36b2 161 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 240 (395)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHSSSHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCCCCSTTB
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999998634258999999875499999863671799999998999999998745778899999999986143231233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~daV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~RLlYVA 320 (395)
T d1w36b2 241 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 320 (395)
T ss_dssp CCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10110256508997114530677778997167668886556666555532225766465578898899999997454645
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 lTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~ 395 (395)
T d1w36b2 321 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 395 (395)
T ss_dssp HTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCC
T ss_pred HHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 734726118997555666788788865778799999707888886779998987457876667789998999879
|
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29725.07 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 M~~ktl~d~d~~~K~VlvR~D~NvPi~~g~I~d~~RI~~~~pTI~~ll~~~akvvl~SH~GRPkgk~~~~~Sl~~~~~~L 80 (394)
T d1phpa_ 1 MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRL 80 (394)
T ss_dssp CCBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99785111376799999994058776099389758999999999999978998999858889999888655569999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~l~~~v~f~~~~~~~~~~~~i~~l~~g~i~lLEN~Rf~~~E~~nd~~fak~La~l~DiyVNDAF~~aHR~haS~~gi~ 160 (394)
T d1phpa_ 81 GELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIA 160 (394)
T ss_dssp HHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCHH
T ss_conf 87406241113443567899999605789788635445354432153889974254488999665136551477511000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~ 240 (394)
T d1phpa_ 161 HYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE 240 (394)
T ss_dssp GTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 02662001108999999999973899976999706763327999987875357278742287999998599667324331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG 320 (394)
T d1phpa_ 241 DKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMG 320 (394)
T ss_dssp GGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCEE
T ss_conf 14778999998776429865588630432123455662477701214786003567248999999986530589955523
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~Le~L~G~~LPgi~aL~~k 394 (394)
T d1phpa_ 321 VFEMDAFAHGTKAIAEALAEALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394 (394)
T ss_dssp CTTSGGGCHHHHHHHHHHHHCTTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 56346241899999999996589869995779999999749867885796678999999879997358785169
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=0 Score=29724.95 Aligned_cols=1 Identities=0% Similarity=-1.589 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~ 80 (394)
T d1e5ea_ 1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 80 (394)
T ss_dssp CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCHHHHHEECCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99997899646889989999830880488886518889998751688678534598887899999999998298502234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v 160 (394)
T d1e5ea_ 81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKI 160 (394)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEE
T ss_conf 36228889998740233443344541320036767777630543542147899999997516456589994257763122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~ 240 (394)
T d1e5ea_ 161 IDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240 (394)
T ss_dssp CCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCC
T ss_pred EHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 12444420132456708873376547645784011798899612342078743233334431468999999999973277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a 320 (394)
T d1e5ea_ 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGA 320 (394)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHH
T ss_conf 78867799999601068899999988899999997652884577577756632155530344667872454026989999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~~ 394 (394)
T d1e5ea_ 321 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR 394 (394)
T ss_dssp HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998088061535668766035785102521189999996698939799976218999999999999999639
|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29716.74 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~y~Gg~V~~p~~G~~~~v~~lDf~SLYPsii~~~Ni~p~t~v~~~~~~~~~~~~~~~~~~~~~~~~g~lp~~ 80 (394)
T d1q8ia2 1 NLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEI 80 (394)
T ss_dssp CTTCSCCCCCCCCCCBCCCCEEEEEEEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEECSTTCEEESSSCSHHHH
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHH
T ss_conf 99888998899837837999757885588831127999999679965437877678876555786543332001178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~l~~~R~~~K~~~~d~~Q~a~Ki~~NS~YG~~g~~~~~~~~~~~A~~iT~~Gr~~i~~~~~~~e~~g~~ViygDTDSi 160 (394)
T d1q8ia2 81 VTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDST 160 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEE
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999742100002321024789871221206002455521136788889888589999988631223466650356418
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~E~~~~~~~~~~kk~~~~~~kkrY~g~~~~~~~~~~ 240 (394)
T d1q8ia2 161 FVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRM 240 (394)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEECCCCTTCTTCCSCEEEEEEETTEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHEEEEHHHHHHHHHHHHHHHCCEEECCCCEE
T ss_conf 99947971245677889999998877656676665113432002553200000022112113234433000011233247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~KG~e~vRrd~~~~~k~~~~~vl~~i~~~~~~~e~vk~~~~~l~~~~i~~~~i~~~~l~k~~~~y~~~~~~hV~~a~~~ 320 (394)
T d1q8ia2 241 VFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLA 320 (394)
T ss_dssp EEESSCC--CCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTGGGGCC-------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 88750014666662677898989999963626888899999987605877045044543156000356787699999999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~~~~~~~~~~~~~g~~i~Yv~~~~~~~~~~~~~~~iD~~yYi~~qi~~~~~ril~~~~~~~~~~~~~~~~LF 394 (394)
T d1q8ia2 321 DEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF 394 (394)
T ss_dssp -----------------------------------CCCCHHHHHHHTHHHHHHTTGGGGTCCHHHHHHHHHCC-
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 98766327988899898679999899986577548998789999974089999998762788999974686889
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=29723.42 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~ 80 (394)
T d2ay1a_ 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98778878998399999997178998978851787658889989888999999998508878988997778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (394)
T d2ay1a_ 81 LILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMK 160 (394)
T ss_dssp HHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHH
T ss_pred HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCCHHHH
T ss_conf 97365654346420003572688889988765428844999832321011899998599799941430101442202688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 240 (394)
T d2ay1a_ 161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 88764136868999479999899989999999999875304289987525122211666664045544443245443345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 320 (394)
T d2ay1a_ 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55666677654201030426899999865366765202423224788889887227888999999999999999999999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v~~ 394 (394)
T d2ay1a_ 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV 394 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998489886036779961698519399999999996898956987899537998889999999998279
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29722.88 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~p~~~~~~~~pf~i~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~g~~~~~~~~l~~~w~~~~dw~~~e~~ln 80 (394)
T d1qo7a_ 1 KAFAKFPSSASISPNPFTVSIPDEQLDDLKTLVRLSKIAPPTYESLQADGRFGITSEWLTTMREKWLSEFDWRPFEARLN 80 (394)
T ss_dssp CTTCCCCTTCCSCCCBCCCCCCHHHHHHHHHHHHHCCCCCCCTGGGCTTCTTSSCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99788999897787364635899999999999984478997445677753459889999999998634389899999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~f~~~i~G~~iHf~h~~~~~~~~~pLlLlHG~P~s~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P~~~~ 160 (394)
T d1qo7a_ 81 SFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPPLDK 160 (394)
T ss_dssp TSCEEEEEETTEEEEEEEECCSCTTCEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCCCSSS
T ss_pred CCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 68975999879888999972258998779993665411899999887641135776550444345424347889998777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~y~~~~~a~~~~~l~~~lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d1qo7a_ 161 DFGLMDNARVVDQLMKDLGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLSAAEKEGIARME 240 (394)
T ss_dssp CCCHHHHHHHHHHHHHHTTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCSCSSSCCGGGSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 65788999999998764047624899840765178999887512521015764034322344321000135677888777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~ 320 (394)
T d1qo7a_ 241 KFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAIHTYRETTPTAS 320 (394)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTTCHHHHGGGHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 77775555555430125555432024520046677787642244568879999999987500132056799999842235
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~p~~~~~~~~~~~~~~~~~~~GHf~~~E~Pe~~a~~I~~Fl~~v~ 394 (394)
T d1qo7a_ 321 APNGATMLQKELYIHKPFGFSFFPKDLCPVPRSWIATTGNLVFFRDHAEGGHFAALERPRELKTDLTAFVEQVW 394 (394)
T ss_dssp ------CTTTTTCEEEEEEEEECTBSSSCCCHHHHGGGEEEEEEEECSSCBSCHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHC
T ss_conf 66222321237840687589980888532589999864684699985994781478699999999999999759
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29721.34 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~R 80 (394)
T d1u1ha1 1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPR 80 (394)
T ss_dssp CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 98767589889761899999999779999999999999999999999998599961559840258899999981996534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 f~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~ 160 (394)
T d1u1ha1 81 YGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSY 160 (394)
T ss_dssp GCCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 44445666288887887258764444554345789774577407886345540168999998763487646245778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~ 240 (394)
T d1u1ha1 161 LLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240 (394)
T ss_dssp HHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEE
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 97753247876544799999999999999999987665988986062021369999999999999999864489974378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~er 320 (394)
T d1u1ha1 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDK 320 (394)
T ss_dssp CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSC
T ss_pred ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 60488763568888636798735788523851148898758755689754681478886999999999999997379200
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 l~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n 394 (394)
T d1u1ha1 321 LVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN 394 (394)
T ss_dssp EEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99938998767787174335799889845151999999999999997288308999999999998843887789
|
| >d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29718.20 Aligned_cols=1 Identities=0% Similarity=-2.187 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~p~~~~~~~~dp~~~lr~~~p~~~~~~~~~~~~~~~w~vt~~~dv~~Vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T d1lfka_ 1 DPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFRPREL 80 (394)
T ss_dssp CCSCGGGCEETTEECHHHHTSCSEEEEC------CCCEEEECSHHHHHHHHHCTTTEEECTTCCC-------------CC
T ss_pred CCCCHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98961104235995799997499058978888888668996799999999759864547765565444565433340432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~ll~~Dg~~H~~~R~~l~~~fs~~~v~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~~~~ 160 (394)
T d1lfka_ 81 VGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDDRD 160 (394)
T ss_dssp TTCGGGCCTTHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHH
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHH
T ss_conf 34133048756899998854331999999998899999999986520268763025676541111021100475301389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ag~~tt~~~ 240 (394)
T d1lfka_ 161 MFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDNISGM 240 (394)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998862233210037999999999999999999864002210000001013678989999999999998643205889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rdp~~~~d 320 (394)
T d1lfka_ 241 IGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPD 320 (394)
T ss_dssp HHHHHHHHHHSGGGGGGGSSCHHHHHHHHHHHHHHHCCBSCCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTCTT
T ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999875222045543101223332110000000023321012113567121483542687401232334679212667
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 P~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~~f~~~~l~~p~~~~~~~~~~~~~g~~~lpv~~ 394 (394)
T d1lfka_ 321 VDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW 394 (394)
T ss_dssp TTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSTTCCCEEECSSSBCEEEECEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEC
T ss_conf 33218899999988878987578069999999999999999967988778886766030687777870005359
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=0 Score=29716.91 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~rGvNlGgwlv~E~w~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~h~~~~it~~D~~~i~~~ 80 (394)
T d2pb1a1 1 AWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNL 80 (394)
T ss_dssp CCCTTTCCEEEEECTTSSSCCTTTCGGGTGGGCBTTBCTTSCCSHHHHHHHHCHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred CCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 97888977898864334305765583344313677765443201888998739687999999998604889999999977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 G~N~VRiPv~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~~pg~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (394)
T d2pb1a1 81 GLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLN 160 (394)
T ss_dssp TCCEEEEEEEGGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSTTHHHHHHH
T ss_pred CCCEEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99889998027884488877552368999999999999799189998511588666767767667644366779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~ia~~~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d2pb1a1 161 VLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEGQW 240 (394)
T ss_dssp HHHHHHHHHSSGGGTTTEEEEESCSCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECTTCCTTTTTTSSCGGGTCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999999715887770688741356786654378999999999999997389976998488755344444315788886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~vv~d~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ge~s~~~~d~~~~~~~~~~~~~~~g~~~~~~~~Ge~ 320 (394)
T d2pb1a1 241 NVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSC 320 (394)
T ss_dssp SEEEEEECCSCSSHHHHTCCHHHHHHHHHHHHHHHHTCSSEEEEEECCSCSSCCSTTTTCTTCCCTTBTCSTTCCBCCCS
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 27985311434678655689888787663034555315676120201023005666623655342214654787655646
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~d~~~~~~~~~~~~r~~~~aQ~~~~e~~~GW~fWt~K~~~~~~W~~~~~~~~G~iP~~~~~~~~~~~c~~~ 394 (394)
T d2pb1a1 321 QPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 394 (394)
T ss_dssp GGGSSGGGCCHHHHHHHHHHHHHHHHHHHTTTEEEESCSCCSSCGGGCHHHHHHTTCSCSSTTCCSSTTSSCCC
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 66567101678899999999999999985279678963016999988889998788969991323688888999
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=0 Score=29716.83 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~f~~~~~r~~~~s~k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~ 80 (394)
T d1c7na_ 1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK 80 (394)
T ss_dssp CCCCSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97678977677999878899999876754997688327997999889999999999857886899987999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~ 160 (394)
T d1c7na_ 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS 160 (394)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 85599888750476334212343321034444332333467662046677654300222222245655540255666553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (394)
T d1c7na_ 161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (394)
T ss_dssp TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred CCCCCEEEEECCCCCCCCEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 04563299945523565412569995343203454320586145532124588666410111002311103234542001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 22222322223567033445555543003443222221024554200144301311121012321000121256530422
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 78950489897888899999999999986999997423418899987999995899999999999999999639
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29722.15 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~s~e~i~~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv 80 (394)
T d1atia2 1 AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHE 80 (394)
T ss_dssp CCCCHHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 93209999999984577415712226710155768427999999999999987540477777513344898886206787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t 160 (394)
T d1atia2 81 ATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWT 160 (394)
T ss_dssp HHCEEEEEEC--------------------------------------------------------------------CC
T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88764420267777532022677665565543321134555666889999875476866525876178899889867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~Ei 240 (394)
T d1atia2 161 PPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240 (394)
T ss_dssp CCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEE
T ss_pred CCCHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 50022100012323345656336777013069999799999971567880112432211466376557756332212026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 E~Fv~P~~~~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~ 320 (394)
T d1atia2 241 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHT 320 (394)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCEECHHHHCCCHHHHHHHH
T ss_conf 89981785157788899999999998368833336775052355540545278999669985840413143121478776
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 k~~~~~~~~~~~~~~~~s~~~l~~~d~~~~~~~iPhVIEPS~GldR~~la~L~~ay~eee~~~~e~R~vLkl~P 394 (394)
T d1atia2 321 KDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKP 394 (394)
T ss_dssp SSTTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCG
T ss_pred HHCCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 42033202344312777663467880678907850178758882189999999876434227997259983599
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=0 Score=29713.25 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~q~f~w~~~~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~d 80 (394)
T d2d3na2 1 TNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQ 80 (394)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98627887742657889719999998999997199989979570178878889786667554434446776888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 f~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T d2d3na2 81 LQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDG 160 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999987998999971266567664310012235765433334564443444345676556778765444445787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~ 240 (394)
T d2d3na2 161 VDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYS 240 (394)
T ss_dssp ESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 65556668888754006888765666652323420267762155888998788876565420567314774224437767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (394)
T d2d3na2 241 FTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSH 320 (394)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCGGG
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 89999999987408740210212366632120010033442111037899999999840760539998721511069868
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~~l~~~r~~~~~ 394 (394)
T d2d3na2 321 AVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAY 394 (394)
T ss_dssp EEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 05767288686524455673199999999999984999679972672098998895548999999999998479
|
| >d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Cullin repeat domain: Cullin homolog 1, Cul-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29719.62 Aligned_cols=1 Identities=100% Similarity=0.769 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (394)
T d1ldja2 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96349999999999986699997999999999999994487432000111101121000121025457999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~ 160 (394)
T d1ldja2 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN 160 (394)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999877437879999999999999999999999999886689988604445666541999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~ 240 (394)
T d1ldja2 161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP 240 (394)
T ss_dssp THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998678966699999999999994832323330132278878998999999999999999999998498
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l 320 (394)
T d1ldja2 241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL 320 (394)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 35899999999999999999746864699999999999999999999999999987165889999999986553518999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n~~~~ 394 (394)
T d1ldja2 321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999997233114578689999999999999999999859988999999999999837666689
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29638.86 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 99899989984899999999997859899994677542211012111343321577887777622797079983078999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~ 160 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 160 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred HHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999975110120012342101232222222222333223354078999998431242011012111223356643233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (393)
T d1i24a_ 161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240 (393)
T ss_dssp EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 32222235555542135455777775310012111223310233310123112777654555542223555445655300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~ 320 (393)
T d1i24a_ 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKK 320 (393)
T ss_dssp HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCE
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf 15667764497268852012223455333337789998874034330466437898067999999999998761987524
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T d1i24a_ 321 MTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393 (393)
T ss_dssp EEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred EECCCCCCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 5646899889866763789999974994056999999999999999887501764588888750011224669
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29643.89 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 t~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGm 80 (393)
T d1n8pa_ 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGS 80 (393)
T ss_dssp CCCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHH
T ss_pred CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99878981042077898899898826882788765138864535773353899868999999999971995488834701
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 aAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~i 160 (393)
T d1n8pa_ 81 ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKV 160 (393)
T ss_dssp HHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHH
T ss_conf 67776653035798344322001340344454541255225885135689999851201346723763234320203555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p 240 (393)
T d1n8pa_ 161 ADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240 (393)
T ss_dssp HHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCH
T ss_conf 54444201467845998567447044770541898999816644579886026301102166999999998643888986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~ 320 (393)
T d1n8pa_ 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAAS 320 (393)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88999982775034679999998888999997336727997302334543200222103457877148999959999999
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a~~ 393 (393)
T d1n8pa_ 321 KFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQATN 393 (393)
T ss_dssp HHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEECCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 9997188443561677757147376022542289999996598949799986528999999999999999649
|
| >d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Arthrobacter, strain b3728 [TaxId: 1663]
Probab=100.00 E-value=0 Score=29641.92 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~p~~~~~f~~~~Wt~~~~g~dpFG~~t~~~~d~~~~~~~~~~lG~~~~~fHd~D~~p~~~~~~e~~~~~~~~k~~l~~~ 80 (393)
T d1xlma_ 1 VQPTPADHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDT 80 (393)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99984456417886146678899898878899999999999981998880352334888998788999999999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Gl~l~~~t~nlf~~p~~~~Ga~tnPD~~VR~~Ai~~~k~~idia~~LGa~~~v~W~G~~G~~~~~~~d~~~~~~~l~e~l 160 (393)
T d1xlma_ 81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGV 160 (393)
T ss_dssp TCEEEEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98110223664334355437756959999999999999999999996898499736888677777658999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~v~~~a~~~g~~~~~~IEpKP~EP~~~~~~~~~~~~l~fl~~~~~~~~~gvnlD~gH~~lag~~~~~~va~a~~~gkLg 240 (393)
T d1xlma_ 161 DTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEKLF 240 (393)
T ss_dssp HHHHHHHHHHTCSCEEEECCCSCSSSSEESSCSHHHHHHHHTTCTTGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 99999898629885698611677775554037599999999980894204575204524441577078898998669730
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~vh~Nd~~~~~~D~Dl~~gs~~~~~~~~~~~~l~~g~~~g~~~y~G~~~fD~~~~r~~~~e~~~~~~~~~~~~~~~l~~~ 320 (393)
T d1xlma_ 241 HIDLNGQRGIKYEQELVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKER 320 (393)
T ss_dssp CCEECBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHCCTTCCCCCCSCEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 24426787666666677885469999999999953664678787775588722667887306999999999999999999
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 A~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~e~L~q~~~~~l~g~~ 393 (393)
T d1xlma_ 321 ALAFRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR 393 (393)
T ss_dssp HHHHHHCHHHHHHHHHHTTTGGGSCSSCTTCCHHHHHTCGGGTTTCCHHHHTTCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9997519999999986565021045543899889999788753699845552232689999999999970489
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29640.85 Aligned_cols=1 Identities=0% Similarity=0.337 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~p~~~~~~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~ 80 (393)
T d1kwga2 1 MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWL 80 (393)
T ss_dssp CEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 94763584549999999999999982999899555346531888992687999999999998799999976777775343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1kwga2 81 VDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFR 160 (393)
T ss_dssp HHHCGGGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECSSSTTTTTTSCCCSHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 21486501245778504666666667799999999999999998771688537887403555655775443167777778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T d1kwga2 161 GWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFNRLQVEILRAHAPGKFVTH 240 (393)
T ss_dssp HHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88887665299999876530022223676545676555555662565899998777677787889875421465555435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 320 (393)
T d1kwga2 241 NFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVAAFHHDLYRGVGRGRFWVMEQQPGPVNW 320 (393)
T ss_dssp EECTTCCSSCHHHHGGGSSSEEEEECHHHHHHHSCCCHHHHHHTTTTCCTTHHHHHHHHHHHHTTTCEEEEEECCSCCSS
T ss_pred CCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 55566656423331256652121355555445566784223444446881688999999997347987036513666666
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~aia~G~~~~gy~~W~~~~~~~E~~~~gL~~~d~~p~~~~~~~~~~~~~l~~~~~~ 393 (393)
T d1kwga2 321 APHNPSPAPGMVRLWTWEALAHGAEVVSYFRWRQAPFAQEQMHAGLHRPDSAPDQGFFEAKRVAEELAALALP 393 (393)
T ss_dssp SSSCCCCCTTHHHHHHHHHHHTTCSCEEEECSBCCSSSTTTTSCCSBCTTSCBCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6468889867999999999977998889857557889750010014078899578999999999999974499
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29636.77 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 91582452087636712799996999999979996998789878877654046765420477167666750015799876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 89999489919999822898205651245632431157896689998447886542179998389819998740477534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred CEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 10233103200014510002578986789997899989999389829998602332110000111112425638770046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 65320112428988421001035321344431156666431023202358666001389888069877999899999999
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~~g 393 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCC
T ss_conf 9799999886876137734899999999999831246998866766312368899799999199089990899
|
| >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC domain: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29641.80 Aligned_cols=1 Identities=0% Similarity=-2.121 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 g~~~~~LRYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~daA~~lv~ef~~~~~~Pa~vIiKH~NPCGvAi~~~~ 80 (393)
T d1g8ma2 1 GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPL 80 (393)
T ss_dssp TTTEEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCC
T ss_conf 99879887976805411386216874316886687027679889999999997465059976999768883366508551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~e~~~~~~~~~~~~~~~~~l~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~i~~~F~EvIIAP~f~~eAleiL~~KKN 160 (393)
T d1g8ma2 81 SEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKN 160 (393)
T ss_dssp CHHHHHHTTCTTTGGGCCHHHHHHHHHHHSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGG
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCEEEEECCCCCCCHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCC
T ss_conf 02332000012211346629999999871485100050788615533210243222020100113455677888742545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 lRll~~~~~~~~~~~~~~~r~i~gg~L~Q~~d~~~~~~~~~~~v~~~~~~pt~~e~~dL~FAwkVvK~vKSNAIvlak~~ 240 (393)
T d1g8ma2 161 GGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDG 240 (393)
T ss_dssp GTCEEEEECTTCCCCSEEEEEETTEEEEEECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETT
T ss_pred CCHHHHCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 21343024644577666367750531110123332455551343202345168899999999999862366458996298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~tvGIGaGQ~SRVdsv~iA~~KA~~~~~r~~p~v~~~~~k~~~~~~e~~na~~~~~~~~~~~~e~~~~~~~~f~~~~~~l 320 (393)
T d1g8ma2 241 QVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQL 320 (393)
T ss_dssp EEEEEECSCSCHHHHHHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 68831899765478999999999887764063011000000134555541677651354332035566655420143112
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~g~vlASDAFFPF~D~ie~aa~~Gv~aIiQPGGSirD~evI~aan~~~i~M~fTg~RhF~H 393 (393)
T d1g8ma2 321 TEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 393 (393)
T ss_dssp CHHHHHHHHTTCCCEEEEESSCCSSTHHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 3788764430357857980268687568999998599399879874251999999998598899878867288
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29636.24 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~f~w~~~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt 80 (393)
T d1hvxa2 1 AAPFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGT 80 (393)
T ss_dssp CCCCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98988648996750668889709999997899997499989979888688889989886676555545556776878899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1hvxa2 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (393)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999987998999984355446677542110134764334455787444455556777777778776655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~ 240 (393)
T d1hvxa2 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (393)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78776556677676433268757556555554300101453300557737777788899998876388615642245578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T d1hvxa2 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQP 320 (393)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66799999999874477623551002763777777764045655003089999999987038779999999753423784
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i~~~~~~rk~ 393 (393)
T d1hvxa2 321 TLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRD 393 (393)
T ss_dssp GGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 3186877578785513444587999999999999982899389883672299996999707786999997179
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=0 Score=29636.07 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~f~w~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~d 80 (393)
T d1e43a2 1 VNGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSE 80 (393)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97617886766778889899999997899997599989969572689888999786567665434456766888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 f~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1e43a2 81 LQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDG 160 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999986998999870025557775444442235741113566654555344555667778877666555444788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f 240 (393)
T d1e43a2 161 ADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF 240 (393)
T ss_dssp ESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 87666677677322157645555556555540202332311437714567799998766543486537861345689799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (393)
T d1e43a2 241 LRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKS 320 (393)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCSTTTCGGGE
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 99999999874286057766533773776641222044430454117799999877216648899998515111680402
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~~i~~l~~~rk~ 393 (393)
T d1e43a2 321 VTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393 (393)
T ss_dssp EEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5755178773413356763479999999999982899479871573299998998867789999999998684
|
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29564.86 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~ 80 (392)
T d1yvua2 1 KLNFKDTVLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSL 80 (392)
T ss_dssp ECCCCCCEECSSCCEECCSSCCHHHHHHCCCCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCHHHEECCCCCCCEEEECCEEHHHHCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCE
T ss_conf 92110210135899742223320224324732356634424789999631066799999999999986292645788671
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~Y~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIa 160 (392)
T d1yvua2 81 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVA 160 (392)
T ss_dssp EECSSTTHHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHH
T ss_conf 31277511599999998402677789999768888665554047999999985499664898866616898358999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 lqinaKlGGipw~l~~~~~~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~ 240 (392)
T d1yvua2 161 EQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSL 240 (392)
T ss_dssp HHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999849834688788999759999998715888984638999999868997789998854776078999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~P~rIIi~RdG~~~~~El~~i~~a~~~~~pki~~IvV~Krh~~Rff~~~~~~~Gt~v~~~~~~~~~~~s~~~~ 320 (392)
T d1yvua2 241 LEKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVY 320 (392)
T ss_dssp HHHTTCCTTCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEEECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCS
T ss_pred HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 99964999866999958877379999999999864995899999815882656789999998771798929999768857
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 qGT~rP~~Y~vl~d~~~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~~~~~~~~~~l 392 (392)
T d1yvua2 321 EGTHQPIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIMYWL 392 (392)
T ss_dssp TTCCCCEEEEEEECSSCHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCCEEEESCCTTC
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 877788589998898998999999999775126718998007799999999999751178654575524219
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=29572.63 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~ 80 (392)
T d1gc0a_ 1 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 80 (392)
T ss_dssp CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHCEECCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 94812020548988877899950882288887518889999862688688523289886899999999998399511101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v 160 (392)
T d1gc0a_ 81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM 160 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEE
T ss_conf 44789999998752369980001211110145564321024774224578667999998478787599964666321354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~ 240 (392)
T d1gc0a_ 161 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 240 (392)
T ss_dssp CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 24399999998459879983672574505867848988998665203598554431024306789898899999703886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~ 320 (392)
T d1gc0a_ 241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGR 320 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88045799982206089999999999999999997399865786524458865332133456778379999959999999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa~ 392 (392)
T d1gc0a_ 321 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKASA 392 (392)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 999858846671246876850108622264228999999759792969998601899999999999999629
|
| >d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Indoleamine 2,3-dioxygenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29567.31 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~f~vs~~~GFLp~~Pl~~LP~~y~~w~~i~~~lp~Ll~~~~lr~~V~~LP~l~~~~l~~~~~~r~a~~~lsfla~aYi 80 (392)
T d2d0ta1 1 SKEYHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTDHKSQRLARLVLGCITMAYV 80 (392)
T ss_dssp CCSSSCBTTTBTSCSSCCCCCCGGGHHHHHHHHTHHHHHHTTCHHHHHHHCCCCCSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 97334087768899984565786327999999987887755809999984786784433896999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 w~~~~~~~~~~LP~~Ia~Pl~~vs~~Lg~pP~ltYa~~~L~Nw~~~dp~~~~~~dNl~~i~~F~g~~dE~~F~lv~v~iE 160 (392)
T d2d0ta1 81 WGKGHGDVRKVLPRNIAVPYCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDCSKGFFLVSLLVE 160 (392)
T ss_dssp HTTSSSCCCSEECHHHHHHHHHHHHHHTCCSSCCHHHHTTSSEEESSTTSCSCGGGEEESCCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 07899977778987888999999997499986516556310310058778887330556402789974135789879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~l~~~~~~~~a~~~~d~~~~~~~l~~i~~~i~~i~~~~~~m~e~~~p~~fy~~~R~fi~G~k~~~~~p~GviYeg 240 (392)
T d2d0ta1 161 IAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEG 240 (392)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCCCCCCCCCEECC
T ss_conf 86446999999999998767758799999999999999999998502029855621423545322437776888730036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~p~~~~G~SgaQSsii~~lD~~LGv~h~~~~~~l~~~L~~mR~YmP~~HR~Fl~~l~~~~~ir~~v~~~~~~~L~~a 320 (392)
T d2d0ta1 241 FWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREA 320 (392)
T ss_dssp TCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTSCCHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf 77776426788766664089999995785668875088999999985739999999999840436788870588899999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 y~~~v~~l~~FR~~H~~~v~~YIi~~~~~~~~~~~~~~~~~~~~~~gTGGT~~~~fLk~~rd~t~~~~~~~~ 392 (392)
T d2d0ta1 321 YDACVKALVSLRSYHLQIVTKYILIPASQQPKENKTSEDPSKLEAKGTGGTDLMNFLKTVRSTTEKSLLKEG 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTC-------------------CTHHHHHHHHHHHHHHHHTCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999886641223678888888888217885488999997767887761389
|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Methylthioribose kinase MtnK species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=29565.08 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~e~Lt~~~~~~la~~lg~~~~~~~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E 80 (392)
T d2pula1 1 KTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIE 80 (392)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHH
T ss_conf 99877269989999999984998988873699807985276899995799848999617713034677788877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~~~~~~~~~~~ 160 (392)
T d2pula1 81 SSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVKKQL 160 (392)
T ss_dssp HHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 99999865057988552899859887798713577653022201542128999999999999998735033442111012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~~d~~l~~~~~~l~~~~~~~~~~LiHGDl~~gNIlv~~~ 240 (392)
T d2pula1 161 VKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEH 240 (392)
T ss_dssp HHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHHHBCCEEECSCCCGGGEEECSS
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEECCC
T ss_conf 33446578887777640104788988741065455778765520789999999874323688600335776784667599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 320 (392)
T d2pula1 241 ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLS 320 (392)
T ss_dssp CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTTSTTHHHHHHH
T ss_pred CEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 30895226522287899999999999999740663034568999999999999999999876165500034899999999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~d~~~~~g~~~~rr~~g~a~~~d~~~i~~~~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 392 (392)
T d2pula1 321 HIFEEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLLVK 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 999999998889999987341444421315798889999999999999999615512999999999999709
|
| >d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Actinoplanes missouriensis [TaxId: 1866]
Probab=100.00 E-value=0 Score=29564.33 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~kfs~g~Wt~~~~g~d~FG~~tr~~~~~~e~~~~l~~lG~~g~~fHd~dl~P~~~~~~~~~~~~~~~k~~l~~t 80 (392)
T d1xima_ 1 VQATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDET 80 (392)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99986673579960366768799998877754799999999985998686067877888998788999999999999863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Gl~~~~~t~nlf~~p~f~~Ga~TsPD~~vR~~Ai~~~k~aID~aaeLGa~~~v~W~G~~G~~~~~~~d~~~~~~~~~e~l 160 (392)
T d1xima_ 81 GLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREAL 160 (392)
T ss_dssp TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98234663342447143158877939999999999999999999995898379637877667876558999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~v~dya~d~g~gv~~~IEpKP~EP~~~~~i~d~~~al~~i~~vg~p~~vgvnlD~gH~~~ag~~~~~~ia~a~~~gkL~ 240 (392)
T d1xima_ 161 NLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLF 240 (392)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf 99999887508885598603778887543407799999999971990036674113245433798579999998659789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 hvHlND~~~~~~D~DL~~Gs~~~~~~~~l~~~l~~g~~g~~~~~G~~~fD~~~~r~~~~~~~~~~~~~~~~~~~~l~~~a 320 (392)
T d1xima_ 241 HIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKANIRMYLLLKERA 320 (392)
T ss_dssp CCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHSCGGGSCSCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99748998989888988898788899999999984777776777875402587677871069999999999999999999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~l~~d~~~~~al~a~~~~~~~~~tl~~~~~~~~~~a~~~~~~~~~~~~~~~rg~~~~~l~q~~~~~l~~~~ 392 (392)
T d1xima_ 321 KAFRADPEVQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR 392 (392)
T ss_dssp HHHHHCHHHHHHHHHTTSGGGGSCSSCTTCCHHHHHHCGGGTTTCCHHHHHTSCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 998778788999998665663376556564468998767533346877786534369999999999972689
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29495.42 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~ 80 (391)
T d1cl1a_ 1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP 80 (391)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 91400360898999889984498548885362898999987527766866767899865999999999981995279851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~ 160 (391)
T d1cl1a_ 81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH 160 (391)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred CCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 50001110222046778769983355520133322011233333200267311122233345553355303576532112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~ 240 (391)
T d1cl1a_ 161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV 240 (391)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCC
T ss_conf 32789998874157827998534332322111353340677623100036653334420003543210001111001357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~ 320 (391)
T d1cl1a_ 241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL 320 (391)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 85120244435316788999999999999988874465433333222204568988630589876402453388899999
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i~ 391 (391)
T d1cl1a_ 321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV 391 (391)
T ss_dssp HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99997499265856778876533478222343579247659996979999561999999999999999669
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29486.67 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T d1pn3a_ 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVA 80 (391)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 97999858873689999999999998899899997803676898779848987836877734856666999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~l~~~~~~~D~vi~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1pn3a_ 81 EWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASI 160 (391)
T ss_dssp HHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999730798478734471378999999980876488531224455312220056788999888778899999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 240 (391)
T d1pn3a_ 161 GLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA 240 (391)
T ss_dssp SCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHTTSSSCCEEEECTTCCSTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 37663200024566640231542431157777771565686567655677888642115897278722431223278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~ll~~a~~~v~hgG~~t~~Eal~~G~P~v~~P~~~d~~~ 320 (391)
T d1pn3a_ 241 KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVV 320 (391)
T ss_dssp HHHHHHHHHTTCCEEEECTTTTCCCSSCCTTCCEESSCCHHHHHTTSSCEEEESCHHHHHHHHHHTCCEEEECSSCCBTT
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99999998569779994364333445688988995446879998425489852743799999982886899335567745
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~~~l~~~~ 391 (391)
T d1pn3a_ 321 EQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK 391 (391)
T ss_dssp BCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 29999999998798897685789999999999998399999999999999885279999999999987459
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=100.00 E-value=0 Score=29485.57 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~ 80 (391)
T d1gpea1 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80 (391)
T ss_dssp CCCCCCCCCGGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHCCC
T ss_conf 98600145554112791212699664999896789999999998787982999837889888873040888998860897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~dw~~~t~p~~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~ 160 (391)
T d1gpea1 81 VDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAA 160 (391)
T ss_dssp TBCCEECCCCTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHH
T ss_pred CCCCCEEEECCCCCEEEECEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCC
T ss_conf 66683413567995741121112576551430378603522334410037998644320378888765315886011035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~ 240 (391)
T d1gpea1 161 GHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN 240 (391)
T ss_dssp TCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCC
T ss_conf 66766445678886432445565545789999999887548721201225765432222211320333442122025763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~ 320 (391)
T d1gpea1 241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQ 320 (391)
T ss_dssp TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCC
T ss_pred CCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCHHHHHHCCCCE
T ss_conf 22013443305325688650788874688658833897278998488799926120466899866797388998779988
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 v~dlP~Gvg~nl~dh~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (391)
T d1gpea1 321 LLDLPVGICSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKSA 391 (391)
T ss_dssp SEECCTTCTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99897541215346766555034345477774331245686220432234443557666689998761249
|
| >d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Glucose-1-phosphatase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29484.95 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~vP~g~~L~~V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~~~~~l~~~~~~ 80 (391)
T d1nt4a_ 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECP 80 (391)
T ss_dssp CCCCTTEEEEEEEEEECCCCBCCCGGGHHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99899998849999973867999988775313477344778999856110889999999999999998760677787778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~v~vrst~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1nt4a_ 81 PPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQ 160 (391)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHSTTSCCCEECCSCCSSCCTTTCCCCCCCCSHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 70005886178719999999999972788777756443457777666775456652106788787764310243139999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1nt4a_ 161 LLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240 (391)
T ss_dssp HHHHHHTGGGSTTTTTTCCCCTTTCCCEEECCTTSCCEEESHHHHHHHHHHHHHHHHHTTCCTTTGGGGTSCSTTHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997633022144555555688888888875324766675077776599999999984899997434676769999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~k~~l~s~HD~ti~~~l~aLgl~~~~~p~~~~~~p~~s~~ 320 (391)
T d1nt4a_ 241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKI 320 (391)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHTTTTTTTSCSEEEEECCHHHHHHHHHHTTBCCCCCTTCSSSSCTTCEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999986287688764022899999999873589886279997156689999998389866788877888976638
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~fEl~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~lCpl~~F~~~~~~~i~ 391 (391)
T d1nt4a_ 321 VFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK 391 (391)
T ss_dssp EEEEEEETTTTEEEEEEEEEECCHHHHHHTCCCCSSSCCEEEECCBTTBCCCTTSCEEHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99998617888755999986376132035665430103774156479988999996689999999999739
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29484.65 Aligned_cols=1 Identities=0% Similarity=-1.190 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 1 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL 80 (391)
T ss_dssp CCSEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
T ss_conf 97498537422679999999999999864665787316659999999999999999999739997819997988999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~ 160 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ 160 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCEEEC
T ss_conf 99642353057998899924654138999999997598899967887872768999975799948999978978881077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~ 240 (391)
T d1p3wa_ 161 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 240 (391)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSC
T ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCC
T ss_conf 78999998555895799730122577564202104653212231005788559999855021156875468856667515
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 320 (391)
T d1p3wa_ 241 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLA 320 (391)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCE
T ss_conf 74023334453000467887766789999999999999877624806502444567518999857877699999718977
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~ 391 (391)
T d1p3wa_ 321 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ 391 (391)
T ss_dssp CBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 98262003776540599997399810069889996678899999999999999999999973967786329
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29482.71 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999815610588999860999999855999975999899797987999999785577874712399999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~ 160 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYD 160 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTT
T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35987844331013334444433223677655664200377545676546788754333677751236668867753433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 n~~v~~~i~~~~~~w~e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1lwha2 161 NPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARMVDEHGRIFGYMLNFDTS 240 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCCSEEEECCCSCSSSHHHHHHHHEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCHH
T ss_conf 41146899998888760699700105588877764211588999998765300255411200011034446731134178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~a~~lllt~pG~P~IyyGdE~G~~~ 320 (391)
T d1lwha2 241 HCIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG 320 (391)
T ss_dssp HHHHHHHHHTCTHHHHHHHHHHTSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHHHHHHHTTSSSEEEEETTGGGTCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHCCCCC
T ss_conf 89999874034899999998631467765000001555543334123201567999999862689987886143027768
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~~~~~~~Li~lRk~~~al~r 391 (391)
T d1lwha2 321 VYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDR 391 (391)
T ss_dssp CCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHHHHHHHHHHTCGGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 98899865311888878777788888887867897423117999875816899999999999813856239
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=100.00 E-value=0 Score=29423.35 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 GgiDtHvHfi~Pqq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eq 80 (390)
T d4ubpc2 1 GGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ 80 (390)
T ss_dssp CEEEEEEECCCTTHHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 98220003348878999985697366468557777878745689888999999865527823115232666986799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~aGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~a~~gRtiH~~HtEGaGGGHaPDii~~~ 160 (390)
T d4ubpc2 81 IDAGAAGLKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMA 160 (390)
T ss_dssp HHHTCCEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGG
T ss_pred HHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHC
T ss_conf 98655005013113647789999999864059268985387510101165899867962111467888889883268763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQaMGRvg 240 (390)
T d4ubpc2 161 GHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAG 240 (390)
T ss_dssp GSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 77865578999887886672666367377641479888026777763033012326777652486444136753246400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 Evi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~tsvtFVSqaAi 320 (390)
T d4ubpc2 241 EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDTNITFMSKSSI 320 (390)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHSCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH
T ss_conf 67776778898877751489875566777013202530246806750741125764678434876345764899858887
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 d~Gi~e~LGL~k~l~pVkn~R~ItKkDMk~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 390 (390)
T d4ubpc2 321 QQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKELPMAQRYFLF 390 (390)
T ss_dssp HTTHHHHHTCCSEEEECCCCSSCCGGGSTTCCCCCCCEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred HCCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEEECCCCCCCCCCHHCCCCC
T ss_conf 5777677088644886058887786785015789983689986689889999046876756630120177
|
| >d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza B virus, different strains [TaxId: 11520]
Probab=100.00 E-value=0 Score=29419.49 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ge~~~n~~~lVtREPyVSC~p~eC~~FaL~QGt~l~~kHSNgTi~DRsp~RtL 80 (390)
T d1nsca_ 1 EPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHL 80 (390)
T ss_dssp CCCCCCCCCBCSCSSEEEEEEECGGGGCCTTSCCCBEEEEEEEEEECSSCEEEEEEEEEEESSSSCCTTTTCSCCSSCEE
T ss_pred CCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEE
T ss_conf 97554451210452123420227210254446674069727601018430145862054111686668841456411201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~s~~lG~~P~~~ns~f~~vaWSsssCHDGk~wl~i~vtG~d~nA~A~~~Y~g~~tdsI~SW~~nILRTQESeCvCinG~C 160 (390)
T d1nsca_ 81 ISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDC 160 (390)
T ss_dssp EEEETTSCCBTTTCEEEEECSEEEEEECSSCEEEEEEESCGGGCEEEEEETTEEEEEEECSSSSCCEECSSCCEEETTEE
T ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 22326799965663379987652433688724899878698872899998999964055334310200432048989989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~vvMTDGpA~~~A~~ki~~i~eGkIi~~~~l~g~~~HiEECSC~Yp~~~~V~CVCRDNW~GsNRPvv~in~~~~s~~~gY 240 (390)
T d1nsca_ 161 YLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRL 240 (390)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTEEEEEECCEESCSBCEEEEEEESSSSEEEEEEECSSSCSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE
T ss_conf 99992688778542589998456288776058886724752115899881699970788888998499545534145315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 vCSGl~~DTPR~~D~s~tg~C~~n~~~G~~GVKGgf~~~~~~~~~~vW~GRTiS~~SRSGfE~~kV~~gw~~~~s~~~~~ 320 (390)
T d1nsca_ 241 MCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVRYDGDPWTDSDALAH 320 (390)
T ss_dssp CCCSSCCSSSCCCTTCCCSSTTCCCSCCSSCCCCCEEEEECSSCEEEEEEECSSSSSSEEEEEEEEESSCTTTCCCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 85366578999888887767888876888863565011012468874764420476667507999778987768620005
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~q~iV~~~n~sgYSg~F~~~~k~C~~pCF~VElIRGrp~e~WTSnS~vvfCg~~s~~~~wswpDGA~i~l 390 (390)
T d1nsca_ 321 SGVMVSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTVTGVDMAL 390 (390)
T ss_dssp EEEEEEEEEECCCEEEEEEECSSSEEEEEEEEEEECCCTTSCCEEEEEEEEECSSSCCCCCCCCCCCTTC
T ss_pred EEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 7899953788862178998589853022899997288766501375699972589977866998656689
|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29417.31 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 mktl~d~~~~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~~ 80 (390)
T d1v6sa_ 1 MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH 80 (390)
T ss_dssp CCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred CCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 97412258789999999403777559908976899999999999997899899995589999989761379999999752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~l 160 (390)
T d1v6sa_ 81 LPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL 160 (390)
T ss_dssp CTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGTS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCHHHH
T ss_conf 46532653101122122222346665378651123245521165277776652476589631466665056622501333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~ 240 (390)
T d1v6sa_ 161 PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRL 240 (390)
T ss_dssp CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 45668999999999999985446750899834640236999999997525666644177999997597668634431146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE 320 (390)
T d1v6sa_ 241 DLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFE 320 (390)
T ss_dssp HHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 66676777654302333333211220123677532356433310024432000134677887750264489975644502
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~F~~GT~~i~~aia~~~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~~ 390 (390)
T d1v6sa_ 321 VPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390)
T ss_dssp STTTTHHHHHHHHHHHTCSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHCC
T ss_conf 5743079999999998558997999488999999974986787179577899999977999642143159
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29416.51 Aligned_cols=1 Identities=0% Similarity=0.171 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~ln 80 (390)
T d1qopb_ 1 TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLL 80 (390)
T ss_dssp CCSSCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGS
T ss_pred CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHEHHHHHHHHCCEEEEEEECCC
T ss_conf 98777865683999687888999999999999997397899999999874489996553758654535977999971487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~ 160 (390)
T d1qopb_ 81 HGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160 (390)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 44656604899999987543873023103477899999999985367459963320011235888999865966999527
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~ 240 (390)
T d1qopb_ 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240 (390)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHEE
T ss_conf 85136676999999976333555530343234334654110156655012389999970986306886235410111100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~ 320 (390)
T d1qopb_ 241 ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGR 320 (390)
T ss_dssp GGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTS
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 11004663248613566356565444551035744554112454113688864443222455334662067899986286
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~~~~l 390 (390)
T d1qopb_ 321 ADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDIL 390 (390)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHC
T ss_conf 3999999999999999999966984168269999999998635579998899997889734799999639
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29410.16 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~m~~f~f~~P~~I~fG~g~l~~l~~~~~~~~~vliV~~~~~~~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~ 80 (390)
T d1oj7a_ 1 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNA 80 (390)
T ss_dssp CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHH
T ss_pred CCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 99888808748986898569999999998679988999897168774399999997189947999282379999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagtgse~t~~avi~~~~~ 160 (390)
T d1oj7a_ 81 VKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTT 160 (390)
T ss_dssp HHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSEEEEEETTT
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99976337877985478854408999999751874300344312466433467873335665443111243101124443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~~a~~~~~~~~~~l~~a~~~~~d 240 (390)
T d1oj7a_ 161 GDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 240 (390)
T ss_dssp TEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCEECCCHHHCCCCEEEEHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf 11000110000145046514430369744430322558888889871775321230367765555530134777760446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~ar~~l~~as~~a~~~~~~~g~~~~g~~Hal~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~ 320 (390)
T d1oj7a_ 241 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEG 320 (390)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999888888998865540486666531344334310268765311233221332001111599999999995485469
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~~~~~~~np~~l~~d~i~~il~~A~ 390 (390)
T d1oj7a_ 321 SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 390 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 9699999999999999998498999899199999999999999863555309997899999999999509
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29410.68 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~ 80 (390)
T d1ud2a2 1 DGLNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTK 80 (390)
T ss_dssp CCCCCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCH
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99777699844057788897799999979999976998899697803888889998866774445554457768889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998558813898714554676630344420268654332345543445554556776677678776543445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~ 240 (390)
T d1ud2a2 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (390)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCHHH
T ss_conf 78876655777751211687655555422222222334410004889999988765301210124653334320067677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (390)
T d1ud2a2 241 TSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHA 320 (390)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGGGTTTTCHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 88888887643202103411124786110101245432333203678889999875134469999987533033783326
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~l~~~R~~ 390 (390)
T d1ud2a2 321 VTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390 (390)
T ss_dssp EECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8870277665400013675789999999999985799849974265097998985126888999997389
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=29345.76 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (389)
T d1e9yb2 1 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI 80 (389)
T ss_dssp EEEEEEETTCTTHHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999856870774586588877776552797608999998600377253662116779837899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~aGa~GlKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gfve~T~~a~~gRtiH~~HtEGaGGGHAPDii~~~~ 160 (389)
T d1e9yb2 81 EAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAG 160 (389)
T ss_dssp HTTCSEEEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGG
T ss_pred HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCC
T ss_conf 72303220231026787888899998775095389438976654303648998679752003137777777617888705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqaMGRvgE 240 (389)
T d1e9yb2 161 EHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGE 240 (389)
T ss_dssp STTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 77766788999878666628886345241034798980267777630330223367776336854531366644443677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 vi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~G~A~~~tSvtFVSqaAid 320 (389)
T d1e9yb2 241 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANITFVSQAAYD 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGSTTHHHHHCEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf 89999998999998863687667776427777666650568577558211048625366135867665635886688875
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~Gi~~~LGL~K~l~pVkn~R~ItK~DM~~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 389 (389)
T d1e9yb2 321 KGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF 389 (389)
T ss_dssp TTHHHHTTCCSEEEECCCCSSCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred CCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 787677387752786138887887785115789982689997689889999135765657630110177
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Probab=100.00 E-value=0 Score=29334.80 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 p~~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~ 80 (389)
T d1sg6a_ 1 PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVS 80 (389)
T ss_dssp CEEEEETTEEEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGG
T ss_pred CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 91688769731898888078775999984179981899978965898999999999870742146762489981698452
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y~rgi~~i~vPTtlla~~Das~g~k~~in~~~~kn~ 160 (389)
T d1sg6a_ 81 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNL 160 (389)
T ss_dssp SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCEEEECCCCCCCE
T ss_conf 89999999999999628876777569996563477889999999855876367314021256653232134211366421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~g~~~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I 240 (389)
T d1sg6a_ 161 IGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 240 (389)
T ss_dssp EEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
T ss_conf 21012045552005554341799998634235553212687888899986999987544201201322104699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~s~~~k~~iv~~d~~e~g~r~~ln~GHt~~HAlE~~~~~~~lHGEaVaiGml~~~~ls~~~g~l~~~~~~~i~~~l~~l 320 (389)
T d1sg6a_ 241 LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAY 320 (389)
T ss_dssp HHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999863202333443263310135466788887632234568889998899999999993799999999999999986
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 gLPt~l~dl~~~~~~~~~~~~~~~l~~~~~~DKK~~~~~i~~vl~~~iG~~~~~~~~~~~~~~i~~~L~ 389 (389)
T d1sg6a_ 321 GLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVVLA 389 (389)
T ss_dssp TCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEETTEESSSSCEECCHHHHHHHCC
T ss_pred CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHC
T ss_conf 999654344200013434599999999986378857997899967457767663277599899999739
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29334.08 Aligned_cols=1 Identities=0% Similarity=0.337 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 80 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRR 80 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97456348987788899999999976998888989989999889999999850777778899868999999999998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
T d2gb3a1 81 QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT 160 (389)
T ss_dssp SCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTE
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 39876552699625543221222112235798688707987433432113686321232222355420245554215674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 161 KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 07984798766443210899999984234499999994131002323322222222223443345565334576563132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~l 320 (389)
T d2gb3a1 241 LITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAEL 320 (389)
T ss_dssp EECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEEC
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf 51100268998766420122223222222222322320002232333321002344445430463236999558999958
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 p~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~~ 389 (389)
T d2gb3a1 321 PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 389 (389)
T ss_dssp SSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999986006329789994750146888889989999728999999999999999999619
|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase eta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29333.64 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~vI~hiDmD~FyAsvE~~~~p~l~~~Pv~V~q~~~via~sYeAR~~GVk~gm~~~eA 80 (389)
T d1jiha2 1 MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEA 80 (389)
T ss_dssp CCSSBHHHHHGGGCTTTGGGSTTCCEEEEECTTHHHHHHHHHTTCCTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHHHHCCCCCCCHHHH
T ss_conf 98413645877279752236877679997365089989967563526997799008869998999997199878929999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~k~CP~li~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~v~~il~~~~~~vE~~SIDEaflD 160 (389)
T d1jiha2 81 LKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLD 160 (389)
T ss_dssp HHHCTTCEEEECCEEETTCSSEECCTTCSTTCSCTTSCCCSSSEEECCHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEE
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
T ss_conf 98697636852121234444333344320001331001465326898899999999999999986888057416637897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 240 (389)
T d1jiha2 161 LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 240 (389)
T ss_dssp CHHHHHHHHHHCCSCBSSSSCBHHHHTHHHHHHHHHCCSCTTSBCCCCCGGGGGCCCCSEECCTTCCCSCCSHHHHHHHH
T ss_pred CCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 50023220355431000122112332212345433332233234456642111222244433433344444356654028
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~~ia~~IR~~I~~etGlt~S~GIa~NK~LAKlAs~~~KPngqtvl~~~~v~~fl~~~~lpi~ki~GIG~k~~kkL~~~l 320 (389)
T d1jiha2 241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTTCSSCEEECCGGGHHHHHTSSSCCGGGSGGGSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999869984302455289999988744988558667899999997267872020787889999999984
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 gi~t~~di~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~l~Rg~~~~pv~~r 389 (389)
T d1jiha2 321 DLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSR 389 (389)
T ss_dssp TCCSSSHHHHHHHHSCSCHHHHHHHHHHHHTSTTCCTTTCSSCTTCHHHHHHHHHHHTTTCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 897613399987653688999855000655541068776555753244248888644147638888889
|
| >d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: CV3147-like superfamily: CV3147-like family: CV3147-like domain: Hypothetical protein CV3147 species: Chromobacterium violaceum [TaxId: 536]
Probab=100.00 E-value=0 Score=29328.76 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~Ls~~Dl~~i~~Ga~iLGtGGGGdp~~~~~l~~~~~~~~~~~~~~V~li~~del~D~~~V~v~~mGAPtv~~E~~~~~ 80 (389)
T d2o3ia1 1 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPN 80 (389)
T ss_dssp CEEECGGGHHHHHHHHHHTTTTCSCCHHHHHHHHTTCSBTTTBSCSCEEEECGGGCCSSEEEEEEEEECHHHHTTCSSCH
T ss_pred CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCEEEEEEEECCHHHHEECCCC
T ss_conf 93757999999851459997278876688999999986642257996699535336888899997640787883405799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~e~~~a~~~l~~~~g~~~~av~~~EiGG~Ns~~pl~~AA~~glPvVDaD~mGRAfPelqm~t~~i~G~~~~P~~lad~ 160 (389)
T d2o3ia1 81 GPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGE 160 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHTCEEESBCSSSSCCSSGGGSHHHHTTCCCCSEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHEEHEECCCCCCCEEEECC
T ss_conf 75799999999999719975799951668722789999999719988747875456774322000105899887699728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Gn~~i~~~~~~~~~~~~~e~~~~~~e~~~R~~~~~~~~Gg~~~~a~~pm~~~~~~~~~~I~gTlS~A~~iGrav~~ar~ 240 (389)
T d2o3ia1 161 SGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKV 240 (389)
T ss_dssp SSCEEEEEEECCCCC---CCCHHHHHHHHHHHHTTSTTTCSEEEEEEEEECHHHHHHHCCSBSHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99779984023555412577899999998877766875174347862659989983201168559999999899998664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~l~~~~~~~g~~~l~~Gki~~v~r~~~~Gf~~G~v~ieg~~~~~~i~fqNE~L~a~~~g~~~~la~vPDLI~ 320 (389)
T d2o3ia1 241 KTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAIS 320 (389)
T ss_dssp CSHHHHHHHHHHHHCCCCEEEEEEEEECCC----------CEEEEESSSCEEEEEESSSEEEEEETTCSSCSEETTSEEE
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECEEEEEECCCCCEEEECCCEEE
T ss_conf 24327999998732667868999689997799705871789999907985899999814189998798978997796799
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~lD~~tG~pitte~~~~~~~~g~~~~ryG~~V~Vi~~pa~~~wrt~~~l~~~GP~~~~fGy~~~y~P~e 389 (389)
T d2o3ia1 321 YFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 389 (389)
T ss_dssp EEECSSSCCCCCHHHHBCSSSSBCTTTTTSEEEEEEECCCGGGSSHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCHHHHHHCCCHHHHCCCCCCCCCCC
T ss_conf 986688864423332345556654234798899999609827486333655095055359997765288
|
| >d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29269.28 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~n~~kplC~i~G~a~~sKDN~IRig~~g~i~V~REPyVSC~p~eC~~FaL~QGa~l~~kHSNgTi~DRsp~RtL~s~ 80 (388)
T d1f8ea_ 1 RDFNNLTKGLCTINSWHIYGKDNAVRIGEDSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISW 80 (388)
T ss_dssp CCCCCCCCEECCCSEEEEEEECCHHHHHTTSCBEEEEEEEEEEETTEEEEEEEEEEEESSSGGGTTTTCSCCTTCEEEEE
T ss_pred CCHHHCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEC
T ss_conf 94011376666433146661477168638987899826512028202034762043101786668841566510113441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~lG~~p~~~ns~f~~vaWSsssCHDGk~Wl~i~vtG~D~nA~A~~~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vv 160 (388)
T d1f8ea_ 81 PLSSPPTVYNSRVECIGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHNGVCPVV 160 (388)
T ss_dssp ETTSCCBTTTCEEEEESSEEEEEECSSSEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCCCBTTEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEE
T ss_conf 26899966774589998643444689724899878798883799998999963265444311100322048989988999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 mTDG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg 240 (388)
T d1f8ea_ 161 FTDGSATGPAETRIYYFKEGKILKWEPLAGTAKHIEECSCYGERAEITCTCRDNWQGSNRPVIRIDPVAMTHTSQYICSP 240 (388)
T ss_dssp EEEECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEEETTTTEEEEEECCCS
T ss_pred EECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECC
T ss_conf 92688778631589998566388876169886731763422899946999706888888975995455431443278646
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~DTPR~~D~s~g~C~~p~~~~g~~GVKGf~f~~G~~vW~GRTiS~~sRsGfE~~~v~~gwt~~~s~~~~~q~iv~n~n 320 (388)
T d1f8ea_ 241 VLTDNPRPNDPTVGKCNDPYPGNNNNGVKGFSYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 320 (388)
T ss_dssp SCCSSSCCCCCSSCCSSSCCCSCCSCCCCCCEECCTTSCEEEECSCSSSSEEEEEEECTTTTTCTTCCCSEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHCCEEEEECCC
T ss_conf 44789998988866478987778888734314766897687664247667761699934875276603204228996587
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 wSGYSGsF~~~~~~~~C~~pCFyVElIRGrp~E~~v~WTSnSiv~fCG~~~~~g~~swpDGA~i~ff~ 388 (388)
T d1f8ea_ 321 WSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEYFL 388 (388)
T ss_dssp ECCCEEEECCTTCSSSEECCEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGGC
T ss_pred CCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 77561771234348873011489999618876563467407779993679986786689865465559
|
| >d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Vacuolar ATP synthase subunit C superfamily: Vacuolar ATP synthase subunit C family: Vacuolar ATP synthase subunit C domain: Vacuolar ATP synthase subunit C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29267.59 Aligned_cols=1 Identities=100% Similarity=1.931 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~y~lvSlP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~IP~lKvGTLDsLv~lsDeL~KlD~~ve~vv~Kv~~ 80 (388)
T d1u7la_ 1 LYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIE 80 (388)
T ss_dssp CCCCCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGGTSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97565069998778788889850468999985225887236304798777135999998788888788899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~R 160 (388)
T d1u7la_ 81 ILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 160 (388)
T ss_dssp HHHHTTSSCSSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHEEEECCCCHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987236110321676878138987564460444288889899999999999998889999999999999999998740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 K~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~ 240 (388)
T d1u7la_ 161 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ 240 (388)
T ss_dssp HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred CCCCCEEECCHHHHCCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCEECCCEEEEEEEEEHHHHH
T ss_conf 04785262427752798872553314058999961531788999986325762687155302568805899999723199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~ 320 (388)
T d1u7la_ 241 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH 320 (388)
T ss_dssp HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999997594304266797899999999999999999999999999999999999999998568766433453589834
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~PyV~~~i~l 388 (388)
T d1u7la_ 321 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 388 (388)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 13899950872589999999998634265300234446667776543212335677515549998349
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29258.03 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT 80 (388)
T d1h0ca_ 1 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGH 80 (388)
T ss_dssp CCCSSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 98767997676555688767212499988999999975768888789899999999999999996899983899869489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i 160 (388)
T d1h0ca_ 81 CALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL 160 (388)
T ss_dssp HHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 99999999861268740231134301000012211111133333587655216899987616971137874200014445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 161 QPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp CCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred CCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC
T ss_conf 67999988764025441001112344332112345651220333321468972677750078887544304666432212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~ 320 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT 320 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEE
T ss_conf 00023443210233443556657999988878999997166531000121047778777633753126887773880899
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98899989999999998519989957852204998998477777999999999999999999862569
|
| >d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29263.16 Aligned_cols=1 Identities=0% Similarity=0.569 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 lR~tT~GESHG~aig~vIdG~PaGl~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~G~TtG~PI~~~I~N~D 80 (388)
T d1qxoa_ 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEEEEEECCC
T ss_conf 95541313688834899816186887499999999955798999997668999827994644389806774499998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~PRPGHAD~~~~~Kyg~~d~r~gggRsSaReTa~rVAaGaiAk~~L~~~gI~v~s~ 160 (388)
T d1qxoa_ 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAELDMEIANH 160 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 77754444411123455432012457888435789987478656687751688999999999999999999819735235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~m~~~I~~ar~~gDSlGG~ve~~~~gvP~GLG~pv~~d~kLd 240 (388)
T d1qxoa_ 161 VVVFGGKEIDVPENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240 (388)
T ss_dssp EEEETTEECCCCSSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHH
T ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 68741320267443687888764311556467868855668889999853887676399999717833368866776541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~La~AlmSIpAvKgvEfG~GF~~a~~~GSe~nD~~~~~~~~~~~~~tN~~GGi~GGISnG~pI~~rva~KPtsSI~~~q 320 (388)
T d1qxoa_ 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPL 320 (388)
T ss_dssp HHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCE
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 89998774243113453056488897421455650100466784113688762016777788769999957865567755
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~Tvd~~~~e~~~~~~gRhDpCivpRAvpV~EAm~alvLad~~L~k~g~d~l~~~~~~~~~y~~~~~~~ 388 (388)
T d1qxoa_ 321 MSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAKHRDYTKNY 388 (388)
T ss_dssp EEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 53566898067246898897075532899999999999999999857775999999999999998519
|
| >d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: 6-aminohexanoate-dimer hydrolase NylC species: Flavobacterium sp. [TaxId: 239]
Probab=100.00 E-value=0 Score=29262.29 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~nw~~~~~~r~~f~~~~~~~pt~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~t~a 80 (388)
T d2dcfa1 1 STGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQLPDLEQRLEQTYTDA 80 (388)
T ss_dssp CCCCCCCSSTTCCTTCSCTTTTTSTTHHHHHTTCGGGTSCCCCCCSCC----CCCEEECTTHHHHCTTHHHHHHHTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 99888455889523677847864886301205558774884342079888775333212444455433999987428847
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~lV~~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~li~~lve~G~l~ldd~v~~ylPe~~~~~~~~iTi~~LL~mtsGl 160 (388)
T d2dcfa1 81 FLVLRGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVLDMQISI 160 (388)
T ss_dssp EEEEETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTCGGGTTSTTSSCBHHHHHTTCBCC
T ss_pred EEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 99998998999974699884320148999889999999999734854456752302454404543215677764233677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pg~~f~Y~~~~~~lLg~iie~~tG~~~~~~~~e~i~ 240 (388)
T d2dcfa1 161 DYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTGLRYVEALSTYLW 240 (388)
T ss_dssp SCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHCSCHHHHHHHHTG
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 64234355651355666653101001246188999874067679998789806789999999987517630222333204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~PlGm~~~~~~~~~~~g~~~~~ggl~~tarDlarfg~l~l~~G~~~g~qils~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 320 (388)
T d2dcfa1 241 AKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDG 320 (388)
T ss_dssp GGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHTTTEETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 84212222222334567632100323132214577788874885488605649999998568972001245656678999
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~Yg~~ww~~~~~~~~~~~~G~~GQ~i~vdP~~~lvIV~ls~~~~~~~~~~~~~~~~i~~~i~~~l~av 388 (388)
T d2dcfa1 321 SYTRQWWCTGNERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRALDAV 388 (388)
T ss_dssp EEETTEEECCCTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97864551699997089887789689999069989999599999985468999999999999997229
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=0 Score=29261.66 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a 80 (388)
T d2ch1a1 1 KFTPPPASLRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAG 80 (388)
T ss_dssp CCCCCCGGGSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHH
T ss_pred CCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 98999634437668885540108998889999997476778878899999999999999999689997199976848999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~ 160 (388)
T d2ch1a1 81 MEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP 160 (388)
T ss_dssp HHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf 99999974211133333222310000033443311332123565445521012344430478633565302222322211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2ch1a1 161 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 240 (388)
T ss_dssp CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred HHHHCCHHCCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 12200000146540366532102346621230576399982655457887289972427788754202575531025603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~ 320 (388)
T d2ch1a1 241 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIM 320 (388)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEEE
T ss_conf 55543023320025576532778999999999998766677898887777877766553022323689788098489998
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~~~~ 388 (388)
T d2ch1a1 321 IPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDYIF 388 (388)
T ss_dssp CCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998513998996788655698899717717899999999999999999961986589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29261.54 Aligned_cols=1 Identities=0% Similarity=-2.420 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 gll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CCCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 96999999998699999999999999868998999999999999869999999999999985999899999999996420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 00222222222121122222222222222222222222222221112222222222222222222110001356788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40258610689986363010247199999999999984946499999971552200529999999998577755479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999878999999999999984999899999999999974879999999986540487300101579999998789
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999986889899999999999985999999999999997099989999999999998589
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=0 Score=29259.67 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~k~~~~~LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~ 80 (388)
T d1eepa_ 1 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRK 80 (388)
T ss_dssp CCSCCCCCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCEECCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 96333578841079827988777778354489538776699877169888788999999998798899908999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~ 160 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV 160 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 99986230044520036763310223300554422547877188876506777655224101220589789999999877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~ 240 (388)
T d1eepa_ 161 KAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 240 (388)
T ss_dssp HTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHH
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 51254543103663167799999999987899866500126799999998629775543122232345654236674238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~ 320 (388)
T d1eepa_ 241 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGS 320 (388)
T ss_dssp HHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC--------------
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCCCCEEEEECCCEEECCCCCCCHHHHHCCC
T ss_conf 89999999861577157853666737730136785155034053654136788418985892740155665487775445
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~~ 388 (388)
T d1eepa_ 321 KSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS 388 (388)
T ss_dssp ----------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC
T ss_conf 21013334664422346704987078887899999999999997421586629998539889997899
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=29258.77 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~ 80 (388)
T d1gdea_ 1 ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNG 80 (388)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 95156410894689999999858998199999889998789999999999855764789985779999999999875133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (388)
T d1gdea_ 81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT 160 (388)
T ss_dssp CCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE
T ss_pred CCCCCHHEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf 56787020431367535889999986589798998899848899999985998999514556687879999997375687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 161 RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGC
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCHHHCCCCCCEEEEEECCHHHCCCCCCC
T ss_conf 59998999698888689999999999999869999997088655333677777656057788089995772433376361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl 320 (388)
T d1gdea_ 241 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI 320 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEE
T ss_pred EEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 78997302102343211232223333220045789986032036899999999875334566653212566589833799
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k~~ 388 (388)
T d1gdea_ 321 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERKLV 388 (388)
T ss_dssp CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99888879999999999998599999810451989999799996499999999999999999961799
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29257.64 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~p~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg 80 (388)
T d1erja_ 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG 80 (388)
T ss_dssp CCCCCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 95687113244147999705765843475322468897089868877762054107607999968999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~ 160 (388)
T d1erja_ 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160 (388)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49948999813640576631665443244321110146778988999988999801213444111121111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 240 (388)
T d1erja_ 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 11111111011111111112221015654101111110000124544211236887875899738981999634557300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
T ss_conf 01024433345778987899997999999999789928987515776432101344420011012455327899988999
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k~ 388 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
T ss_conf 99999969897999999999699999688997899998467425899999999918997999762149
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=0 Score=29257.19 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 94523745399589999999999998779986899997899999899999999998558877899988999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf 87316577885599868789999999999819989899928981879999998568599983153336678999999727
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~ 240 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHH
T ss_conf 77874999889999877403535554432011237867972056531034677887888948522156057037705413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g 320 (388)
T d1j32a_ 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred CCHHHEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 60657599998899999998766521245668999887632445099999999999999999999998479978668993
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l~ 388 (388)
T d1j32a_ 321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGIL 388 (388)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 68999988887999999999999869999981643599996999983899999999999999999859
|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29255.64 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~g~~ltr~~~d~~~g~~i~~~~~t~~G~~~v~v~~q~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~V~~v 80 (388)
T d1q8ia1 1 AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGL 80 (388)
T ss_dssp CEEEEEEEEEEECCTTCBEEEEEEEETTEEEEEECSCBCEEEEEEGGGHHHHHHHTTTCCSEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEECCEEEECCCCCEEEEE
T ss_conf 98623630024771897799999985998879998799679999854567999998547781664322055789779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 y~~~~~~~r~l~~~l~~~g~~vyEaDI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~P~lkilsfDIE~~~ 160 (388)
T d1q8ia1 81 YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTR 160 (388)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECTTCCCCCCEEEEEEEECT
T ss_pred EECCHHHHHHHHHHHHHCCCEEEECCCCHHHEEEEECCCCCCEEEEEECCCCEEECCEEEECCCCCCCCEEEEEEEEECC
T ss_conf 92899999999998862698589768996884899787888858998624661541067566788997359999999747
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~si~l~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~E~~LL~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~ 240 (388)
T d1q8ia1 161 HGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR 240 (388)
T ss_dssp TSCEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 88667898548998889999567777787855999969999999999999987199889960788878899999999858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~ 320 (388)
T d1q8ia1 241 LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRF 320 (388)
T ss_dssp CCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHH
T ss_pred CCCHHHHCCCCCEEEECCCCCCCEEEECCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 87404424772205875655651133020499860268897563043546776755410024455557255589987157
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~d~~~l~~Y~~~D~~Lv~~L~~k~~~i~~~~ela~l~g~pl~~~g~s~~~~~~lll~~~~r~g~v~P 388 (388)
T d1q8ia1 321 AEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAP 388 (388)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTTTCCHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCEECC
T ss_conf 12489999998999999999999877899999999884979899788499999999999997799587
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29252.96 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~yPIVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~S~~~RA~eL~~~I~~~~~d~G~~ 80 (388)
T d1ku0a_ 1 ASPRANDAPIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAA 80 (388)
T ss_dssp CCCCCCCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSBCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98877999889818866677544676214678536468999858978998516986678999999999986345453376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTT 160 (388)
T d1ku0a_ 81 HAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTT 160 (388)
T ss_dssp HHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 77652302237567220003366786358604554587999999702356432222212344333223567750688885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 IsTPH~GS~~AD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~~es~~~~~~~~~~s~~~~~~~~a 240 (388)
T d1ku0a_ 161 IATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNAPYTSEIYDFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTA 240 (388)
T ss_dssp ESCCTTCCGGGGSTTHHHHHHHHHHHHHHHHHHHTTSCGGGCCCCCCBGGGTBCCCTTCCHHHHHHHHHTSHHHHSSSBH
T ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 05788986366542346652147889998876403542110002466653343457651099999988538876666401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~dLtt~g~~~fN~~~~~~p~v~Y~S~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NDGlV 320 (388)
T d1ku0a_ 241 RYDLSVPGAETLNRWVKASPNTYYLSFSTERTYRGALTGNYYPELGMNAFSAIVCAPFLGSYRNAALGIDSHWLGNDGIV 320 (388)
T ss_dssp HHHHSHHHHHHHHHHCCCCTTSEEEEEEECCEEECTTTCCEEECTTSCHHHHHHTHHHHTTCCBGGGTBCGGGCCBSSSS
T ss_pred HHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 03106599999733357899846777785143345777632224444454334557545553346532137679988865
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~v~S~~~g~~~~~~~~~~~~~~i~~G~W~~~~~~~~DHld~iG~~~~~~~~~~~~Y~~~a~~L~~l~~ 388 (388)
T d1ku0a_ 321 NTISMNGPKRGSNDRIVPYDGTLKKGVWNDMGTYNVDHLEVIGVDPNPSFNIRAFYLRLAEQLASLRP 388 (388)
T ss_dssp BGGGSSSCCTTCCCCEEECCSSCCBTSEEEEEEESCCTTGGGTSSCCTTSCHHHHHHHHHHHHHTCCC
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88557587056777543345654455011036547649997388987877999999999999843999
|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: phi29 DNA polymerase species: Bacteriophage phi-29 [TaxId: 10756]
Probab=100.00 E-value=0 Score=29257.32 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~t~~s~~~~~fk~~~~~~~~~~~~p~~~~~~~~~ir~~y~GG~~~~~~~~~~~~~~~i~~yD~nSLYPs~M~~~~~p~g~ 80 (388)
T d2py5a2 1 MTAGSDSLKGFKDIITTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIGEGMVFDVNSLYPAQMYSRLLPYGE 80 (388)
T ss_dssp SSHHHHHHHHHHHHHCHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEECSEEEEEETTHHHHHHHHSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCC
T ss_conf 96307899999999765146540888991477888971217623214544555668548986557239998337899776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d2py5a2 81 PIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEY 160 (388)
T ss_dssp EEEEESSCCCCTTSCEEEEEEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEE
T ss_conf 04653614666666770489999822765557766530344677865784668850567873899999995587258888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~f~~~~~~~k~~~~~~~~~kk~~~~~~q~~~KLl~NSlYGk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2py5a2 161 ISGLKFKATTGLFKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEETKDPVYT 240 (388)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCCCBCCCCCH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHEECCCCCCCCCEEECCCCCEEHHHHHCCCCCCCCCH
T ss_conf 76677212357899999842588774017799999974542441013335655434641443200121210001464431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~ia~~ita~~r~~~~~~~~~~~~~v~Y~DTDSi~~~~~~~~~~~~~~~~~~~lg~~~~E~~~~~~~~~~~K~Y~~~~~~~ 320 (388)
T d2py5a2 241 PMGVFITAWARYTTITAAQACYDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMK 320 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTEEEEETTEEEEESSSCCGGGGGGBCSSSTTSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCCHHHCCCCCHHHCEEECC
T ss_conf 48899998888889987641488379983636886577621567764245650546301010112116643201457424
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~d~~~~~~ 388 (388)
T d2py5a2 321 EVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQVPGGVVLVDDTFTIK 388 (388)
T ss_dssp EETTEEEECBTTBCSEEEEEEEETTCCHHHHTTCCTTTCSTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCHHHHEEECCEEEEECCCCCEECCCEEECC
T ss_conf 54332233442340152456455231699999987750502411656351177069826524402239
|
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=0 Score=29255.56 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 80 (388)
T d1x38a1 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKA 80 (388)
T ss_dssp CCCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876889999999999999877999999613064445688788985256616636876667898999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~giPlli~~D~e~G~~~~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~Gin~~~aPv~Dv~~~p~~gr~~ 160 (388)
T d1x38a1 81 CMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCY 160 (388)
T ss_dssp HHTSSSCCCCEEEECCSSSSTTSTTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCEECCCBCCCCSCTTSTTGG
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87436898836633655675235664210033311025897999999998657887448763367763534564446556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 et~geDp~l~~~~~~~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~ 240 (388)
T d1x38a1 161 ESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240 (388)
T ss_dssp GSSCSSHHHHHHGGGHHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 67667889999988653664110135430122223455674213314436886646740334530488899886145577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~ 320 (388)
T d1x38a1 241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNK 320 (388)
T ss_dssp HHHTTCCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf 77605651223422357756657999999998730599752424221023312356775789999998517881347853
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd~p~~~~~~~~~i~~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 321 YQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKS 388 (388)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 89999999999985998999999999999999999489988877824544069999999999999639
|
| >d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Sialyltransferase-like domain: Alpha-2,3/2,6-sialyltransferase/sialidase species: Pasteurella multocida [TaxId: 747]
Probab=100.00 E-value=0 Score=29187.32 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ktlEvYvD~AsLPslqqlm~iiq~ne~~~n~rli~w~R~~i~d~~l~~~~n~~F~~~~~n~~~~~~~~il~~~~~~~~in 80 (387)
T d2ex0a1 1 KTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELN 80 (387)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTTCSSSCEEEEETTCCCCHHHHTTCSSEEECCEETTEECTHHHHHHTTCCSCEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 95699954355615999999986046778821577742368778987301021354457895299999997174433799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~~Nt~hS~d~~~~I~~~~~~~~~kv~i~~L~lYDDGSaEYV~l~~~k~~d~~~~~~~~~~~l~~~l~~Gt~~~~n~~~~ 160 (387)
T d2ex0a1 81 IHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIA 160 (387)
T ss_dssp EEEESTTHHHHHHHHHHHHHHTTTTEEEEEEEEECCSHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHCCCCCSCHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 82121767776899999998740573048887752885888667764133034445678899988876387778985101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Y~w~qlypt~YH~Lr~Dyf~~~~~L~~Lk~yL~~n~kqM~Wd~f~~fn~~Qk~lf~~~vgf~~E~~qq~~~q~~nFiFt 240 (387)
T d2ex0a1 161 RYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFT 240 (387)
T ss_dssp TTCGGGTSCEEEEESCHHHHHHCGGGHHHHHHHGGGEEECCSCHHHHSCHHHHHHHHHHHTCCHHHHHHTCCSSEEEEEE
T ss_pred EEEHHHCCCCHHHHEEHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 33044406743431105565057452479999840333467523200698888899987179899999997267875997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 GTts~~~~~e~~eyyaqqQInvin~a~ne~s~~~~g~~ydLfFKGHP~~~~~N~~I~~~~~~mi~IpakIpFEvLmMTg~ 320 (387)
T d2ex0a1 241 GTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGL 320 (387)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHHHHSTTSTTCCCTTEEEEEECCTTCTHHHHHHHHHSSSCEECCTTSCHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 13455676306778899989998732388996530675115772699865056899743355522644586299987278
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
+
T Consensus 321 LPd~VGG~aSSlyFsiP~e~in~ivFtss~~~~s~~d~~~~~lvqVM~~L~iv~~~~V~fw~~~k~~ 387 (387)
T d2ex0a1 321 LPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDALNNPYVKVMRRLGIIDESQVIFWDSLKQL 387 (387)
T ss_dssp CCSEEEEECCGGGGGSCGGGEEEEEECCCSSCSSHHHHHTSHHHHHHHHTTSCCGGGEEEGGGSCCC
T ss_pred CCHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCHHHEEEHHHHHCC
T ss_conf 8054336000258975533124899933764256565653839999999777766763676753039
|
| >d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29192.69 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 e~~n~t~plC~i~gfa~~sKDN~iR~g~~g~i~V~REPyVSC~p~eCr~FaL~QGa~l~~kHsNGTi~DRsp~R~L~s~~ 80 (387)
T d2aepa1 1 EYRNWSKPQCKITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNRHSNDTVHDRTPYRTLLMNE 80 (387)
T ss_dssp CCCCCCSCBCCCSEEEEEEECCHHHHHTTSCCEEEEEEEEEECSSCEEEEEEEEEEESSSGGGTTCCCSCCTTCEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEECC
T ss_conf 95546676675343046763662575378866998266020284401357631321027866688426654101035513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 lG~P~~~~s~~~~vaWSsssCHDGk~wl~I~vtG~D~nA~A~i~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vvmT 160 (387)
T d2aepa1 81 LGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGHDENATASFIYDGRLVDSIGSWSKKILRTQESECVCINGTCTVVMT 160 (387)
T ss_dssp TTCCCCTTCEEEEECSEEEEEECSSCEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCEEETTEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEE
T ss_conf 67997558657899863243468862489987768888089999899985326544430120042204898998899992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 DG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg~~ 240 (387)
T d2aepa1 161 DGSASGRADTKILFIEEGKIVHISPLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINVKDYSIVSSYVCSGLV 240 (387)
T ss_dssp EECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEECTTTCCEEEEECCCSSC
T ss_pred CCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCHHCEEEEEEEECCCC
T ss_conf 68878853068999845638877606888673276330379982699970688877897499540022045305753644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~DTpRp~D~s~~g~C~~p~~~~G~~GVKGf~F~~Gn~vW~GRTiS~~sRsGfE~~~v~~gwt~~~Sk~~~~~q~iV~n~n 320 (387)
T d2aepa1 241 GDTPRKNDSSSSSHCLNPNNEEGGHGVKGWAFDDGNDVWMGRTISEKFRSGYETFKVIEGWSKPNSKLQINRQVIVDRGN 320 (387)
T ss_dssp CCSSCCCTTTCCCCSSSCCCSSCSSCCCCCEEEETTEEEEEECSSSSSSEEEEEEEETTTTTSTTCCCEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
T ss_conf 78999888776655658888888886163368658973876532376677616999458875878634111479995588
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
|
T Consensus 321 wSGYSGsF~~~~k~C~~pCF~VElIRGrp~E~~v~WTS~S~v~fCG~~~~~~~~swpDGA~i~~mp~ 387 (387)
T d2aepa1 321 RSGYSGIFSVEGKSCINRCFYVELIRGRKQETEVWWTSNSIVVFCGTSGTYGTGSWPDGADINLMPI 387 (387)
T ss_dssp ECCCEEEEEEECSSSEEEEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGSCC
T ss_pred CCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7752257996899842002899996078764505785187799936789867866899766676669
|
| >d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Hypothetical protein SO4414 species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=29190.36 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~d~wir~~f~~~n~~le~~y~~~~~~~~~~~~g~~~k~~l~~~g~~~i~~ll~egntdegf~~~f~llgnvg~ym 80 (387)
T d1zeea1 1 YNTEAFDEWIRSRFVELNSQLEQLYYQQTDRANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGLYM 80 (387)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHSSSSSCCSSSCHHHHHHHHHHHHHHHHTTTTTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96678889999999998799999997477732342000899999999889999999966785231799999975158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf~~~hl~~hn~a~~~~~k~ft~l~de~~f~~~nt~~~~a~~~ 160 (387)
T d1zeea1 81 AACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRFATAHLTTHNRAHNGIYKRFTDLPDEKLFVDYNTKGILAYKR 160 (387)
T ss_dssp HHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSCCHHHHTTTCCEETTEECCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99874267785301368414437999988886399923566666315665410676305883578999875799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~~l~~~~~lgi~hp~~~~ll~~~~~aLq~v~~sn~~l~~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vl 240 (387)
T d1zeea1 161 ASDALLKIQPLGISHPISHDLLRVTKQALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVI 240 (387)
T ss_dssp HHHHHHTTTTTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEECCCCHHHCCCHHHH
T ss_conf 99998764287899754899999999999999999999998439999899856312543237751079971201008999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 D~LLGvcha~dP~ysqfL~dmr~YMPP~hra~L~d~~r~PSl~d~vLsa~~~~~~~~y~~nL~aflevC~~hg~afR~hH 320 (387)
T d1zeea1 241 DLTLGLCFANEASYSQMLVDKFLYMMPEDQQILRECMRRPNLMDDFLQAKGCIHQDWYQENLKLFIEVCELHGQTAIQHH 320 (387)
T ss_dssp HHHTTSSCTTSHHHHHHHHTTGGGSCHHHHHHHHHHTTSCCHHHHHHHTGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975563799409999999986179789999999863871689998635650038999999999999999999999999
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 lQlV~KYI~~pS~~~~~q~~~~lTaSGPpl~vLLk~LkKLRD~R~AA~r~Di~tr~~d~~~l~~~l~ 387 (387)
T d1zeea1 321 NELVTKYIAEPSVSMEQQHLAKVTASGPPLHVLLASLERLRDRRAAVLRDDIRTRYYDLKKLKDSLR 387 (387)
T ss_dssp HHHTSCC------------------------CCHHHHHHHHHHHTTCCCSSSCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999972887434266566447899807899999998665542031137763999999998609
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=100.00 E-value=0 Score=29181.26 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~f~~g~d~s~~~~~e~~g~~~~~~~g~~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~ 80 (387)
T d1ur4a_ 1 GLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEK 80 (387)
T ss_dssp CCCCCCCTTCCTTCEEEEECTTHHHHHHTTCCCBCTTSCBCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHH
T ss_pred CCCCCCCCCCCHHCEEEEECHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 95223578998100777861068999867977889999710599999983998799404447743335767776242999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~ 160 (387)
T d1ur4a_ 81 AIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL 160 (387)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 99999999987997999867787776877777850321322047999999999999998863699812799724888674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~ig~s~Y~~w~~~~~~~~~~l~~ 240 (387)
T d1ur4a_ 161 AGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTS 240 (387)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 67688999999999999998730887527872267653277889999998659876400202312347608999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~~~~~k~v~v~E~~~~~t~~~~d~~~~~~~~~~~~~~~p~s~~gQ~~~l~~l~~~~~~~~~~G~G~~YWep~w~~~~~~ 320 (387)
T d1ur4a_ 241 VADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVGPA 320 (387)
T ss_dssp HHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSSCG
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 99983996389985044347786444765787633356777899999999999999985478805999735763136777
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~w~n~aLFd~~g~~l~~l~~f~~~~~~~~~ 387 (387)
T d1ur4a_ 321 HRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFDFKGRPLPSLHVFQYVDTGTPF 387 (387)
T ss_dssp GGHHHHHHHHHHHCCSSBCGGGTTTCTTTHHHHCBSCSCGGGCSBCTTSCBCGGGGHHHHHHHCCC-
T ss_pred CCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 6543450345412642032213324641123456777411210335589867577877413478999
|
| >d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: (Phosphotyrosine protein) phosphatases II superfamily: (Phosphotyrosine protein) phosphatases II family: Myotubularin-like phosphatases domain: Myotubularin-related protein 2, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29182.45 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~edGW~~yd~~~E~~RlGl~~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~R~Pvl~w~~~~~~ 80 (387)
T d1zsqa2 1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQ 80 (387)
T ss_dssp CCCSSCGGGSCCHHHHHHHTTCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTC
T ss_pred CCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 98788763235889999863899888788542699704588998169828589999999987636997607988759998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~L~RssqP~~g~~~~r~~ede~~l~~i~~~~~~~~~~~I~D~Rp~~na~an~~~ggG~E~~~~Y~~~~~~f~~i~nih~ 160 (387)
T d1zsqa2 81 ATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHV 160 (387)
T ss_dssp CEEEEECCBCCTTTTCCCHHHHHHHHHHHHHSSSCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHH
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCEEEEECCCCHHH
T ss_conf 36885178577756787689999999999737776753555477414688752248986552105675245304665278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 vr~s~~kl~~~~~~~~~~~~~~s~le~s~WL~~i~~~L~~A~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL~ql~lDpy 240 (387)
T d1zsqa2 161 MRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY 240 (387)
T ss_dssp HHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999998558875466775243444499999999999999999970897399857888752489999999973832
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 yRTi~GF~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~h~~s~~fg 320 (387)
T d1zsqa2 241 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFG 320 (387)
T ss_dssp GGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 11188899999988873378632342678777566777985699999999998749740112799999999986026646
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 tFl~n~e~eR~~~~~~~~t~Slw~~~~~~~~~f~N~~Y~~~~~~~l~P~~~~~~~~~W~~~ylR~~p 387 (387)
T d1zsqa2 321 TFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNP 387 (387)
T ss_dssp TTCSSSHHHHHHTTHHHHSCCHHHHHHTCGGGGBCTTTTSCSSSCCCCCCSTTTCCCCHHHHTCSCC
T ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEHHHHCCCCCC
T ss_conf 4555899999871768787369999987599855978788999857033675667426753335587
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29185.80 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~l~~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~ 80 (387)
T d1qvra2 1 TYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 80 (387)
T ss_dssp CCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCE
T ss_conf 93779999798899998599998748089999999998248899976879999889999999999998089997886966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~ 160 (387)
T d1qvra2 81 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL 160 (387)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred EEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH
T ss_conf 89955766652667413689999999998505899669872408888427778774138999999973788516663689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a 240 (387)
T d1qvra2 161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 240 (387)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99987633679998246112799867889999999999987404774669999999985023666566704688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~ 320 (387)
T d1qvra2 241 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH 320 (387)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998641589588999999999999999998740145788887653323567999999999999888879999999999
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVSrWTG 387 (387)
T d1qvra2 321 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG 387 (387)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999999999999764688788875250799999999999873579877686398999999976109
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29180.36 Aligned_cols=1 Identities=0% Similarity=-0.193 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~ 80 (387)
T d1vefa1 1 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 80 (387)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 96688606531489878898318984749999798799998464187665528969999999999976364666557705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~ 160 (387)
T d1vefa1 81 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE 160 (387)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
T ss_conf 99999876530232101111246726799999999876113312325656889996123863478655678878899826
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD 240 (387)
T d1vefa1 161 FIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 240 (387)
T ss_dssp EECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred EECCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86889799999756897479999787788888649989999999999976926984002224674677765446783776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~ 320 (387)
T d1vefa1 241 ILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK 320 (387)
T ss_dssp EEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTT
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 33313257887666332221023102236883553799863001011200010333222057665078999998617984
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 321 IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5788521469999982774699999999789759933899899979713999999999999999859
|
| >d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Thermus aquaticus, subsp. Thermophilus [TaxId: 271]
Probab=100.00 E-value=0 Score=29179.97 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~p~~~~~f~~~~W~~~~~g~dpfg~~~~~~~~~~~~~~~~~~lg~~~~~fHd~d~~p~~~~~~e~~~~~~~~k~~~~~ 80 (387)
T d1bxba_ 1 MYEPKPEHRFTFGLWTVGNVGRDPFGDAVRERLDPVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDE 80 (387)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998766147997235787889988543112788999999984499878516665588899878999999999998641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Gl~~~~~t~nlf~~~~~~~Gs~t~pD~~vR~~Ai~~~k~~id~a~~LGa~~~vlW~G~dG~~~~~~~d~~~~~~~~~e~ 160 (387)
T d1bxba_ 81 TGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREA 160 (387)
T ss_dssp HTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHH
T ss_pred CCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 68721122454355623324764689889999999999999999998499979975787766776306799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~v~~~a~~~g~~~~i~iEpkP~EP~~~~~~~~~~~~l~~~~~~g~~~~~gl~lD~~H~~l~g~~~~~~v~~a~~~gkL 240 (387)
T d1bxba_ 161 LNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHAVAQALDAGKL 240 (387)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHHTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCHHHHCCCCHHHHHHHHHHHCCE
T ss_conf 99999977750788379995168988544214889999999998377020754123044530487668899999983964
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~vh~Nd~~~~~~D~DL~~g~~~~~~~~~~~~~L~~~gy~G~~~fD~~~~r~~~~~~l~~~~~~~m~~~a~ll~~a~~l~ 320 (387)
T d1bxba_ 241 FHIDLNDQRMSRFDQDLRFGSENLKAAFFLVDLLESSGYQGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKERAEAFR 320 (387)
T ss_dssp CCEECCBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHTTCCSCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15574777777887666888621889999999998458876433134567788500689999999999999999999988
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~d~~~~~~l~ary~~~~a~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~qE~Le~l~n~~i~g~~~ 387 (387)
T d1bxba_ 321 EDPEVKELLAAYYQEDPAALALLGPYSREKAEALKRAELPLEAKRRRGYALERLDQLAVEYLLGVRG 387 (387)
T ss_dssp TCHHHHHHHHHHTCCCHHHHTTSSSCCSHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHTTCCC
T ss_pred HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6768999999987212442201100145679984476678431432672499999999999862369
|
| >d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: beta-secretase (memapsin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29177.94 Aligned_cols=1 Identities=0% Similarity=-0.062 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G 80 (387)
T d2qp8a1 1 FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEG 80 (387)
T ss_dssp CTTTTTCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCEEE
T ss_conf 92133025589999899999988999799999989961048926898767881583028871757981899968960999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~D~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~~~~fs~~l~~~~ 160 (387)
T d2qp8a1 81 ELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 160 (387)
T ss_dssp EEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCS
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 99999999847773367478999982477621134556622334564435788778537888626574215767632455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~ 240 (387)
T d2qp8a1 161 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPK 240 (387)
T ss_dssp SCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCEEEECCCCEEECCH
T ss_conf 44456644457784467456233334573586314543336899879999999656654567764169816997086889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~ 320 (387)
T d2qp8a1 241 KVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDD 320 (387)
T ss_dssp HHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHEEECCCCCCCCCE
T ss_conf 99999999856001465567754453156410038986421340578866621233079998879911551356786766
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
-
T Consensus 321 c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T d2qp8a1 321 CYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYN 387 (387)
T ss_dssp EEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCSSCCCEEEEEEECCCGGGGSCC
T ss_pred EEEEEECCCCCCEEEHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 8998707999977970894286899998999999999778687788131256798888984652789
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=0 Score=29177.17 Aligned_cols=1 Identities=0% Similarity=-0.727 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 80 (387)
T d1k3ia3 1 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 80 (387)
T ss_dssp CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf 98788978716786889861017899925999999984057666788776068999988889686667789874452568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 99946886898636888621675675574421565664210130355317826652136633354320566348889551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T d1k3ia3 161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 240 (387)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 15887644311346651365042269997079877874686774781486667173166556676657632226378861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 35882478875367887752100000111113567884060366566543433566058749998884567668899470
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl~~~~ 387 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGGBCTT
T ss_pred CEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCCC
T ss_conf 1079897999918878899975531279999889999999698767888661148998260405898
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29102.98 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG 80 (386)
T d1r6ta2 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 80 (386)
T ss_dssp CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHCCEEEECCCHHHHHHHHHCCCCEEEEEC
T ss_conf 98438660668876666699999984888688899999997536886154533604422679999999974998589945
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~ 160 (386)
T d1r6ta2 81 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM 160 (386)
T ss_dssp ECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 17998402899999999999999721324489932517640456999999999999999999817895002899684799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltR 240 (386)
T d1r6ta2 161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240 (386)
T ss_dssp GGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899999999998756514888864335677676531279889999983470542255665420110262899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 Dia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~~ 320 (386)
T d1r6ta2 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 320 (386)
T ss_dssp HHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHH
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99998278886221144556778743445567777434635988899997661143168765446000389841317999
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~l~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl~ 386 (386)
T d1r6ta2 321 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA 386 (386)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999986987589999999976999989999999999999978999999998888999985546799
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29102.36 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS 80 (386)
T d1v8za1 1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGA 80 (386)
T ss_dssp CEETTEECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSB
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97678098848788899999999999999639899999999987338999855173766876289739999666877877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~ 160 (386)
T d1v8za1 81 HKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160 (386)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 64168999999876528831675225226999999999976986430344115544179999998649827994687430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~ 240 (386)
T d1v8za1 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 240 (386)
T ss_dssp HHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 88889989999986056654214544574336133310013544537888998628989889977887178899998764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 320 (386)
T d1v8za1 241 NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV 320 (386)
T ss_dssp TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 23670599970576643355532000357655551021001068777603443222221245530577888754854999
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV~iltG~G~kD~~~~~~~~g 386 (386)
T d1v8za1 321 TVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSG 386 (386)
T ss_dssp EEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHHC
T ss_pred EECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCC
T ss_conf 989999999999999965993566799999999998787199897999968885212999998539
|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Streptomyces olivochromogenes [TaxId: 1963]
Probab=100.00 E-value=0 Score=29100.92 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~p~~~~rF~~~~Wt~~~~g~dpFG~~tr~~~~~~d~~~~~~~lG~~~~~fHd~D~~P~~~~~~e~~~~~~~i~~~l~~ 80 (386)
T d1muwa_ 1 SYQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDA 80 (386)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99898445335886205765879999888999898999999998599879747775688899867889999999999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Gl~~~~~t~nlf~~p~~~~Ga~tspD~~vR~~Ai~~~k~aiDia~~LGa~~vv~W~G~~G~~~~~~~d~~~~~~~l~e~ 160 (386)
T d1muwa_ 81 TGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEA 160 (386)
T ss_dssp HTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 29701134156410200113787792999999999999999999998399848984787755677667999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~v~dya~~~g~~v~~~IEpkP~EP~~~~~~~t~~~al~~l~~~g~~~~~glnlD~gHa~~ag~~~~~~ia~a~~~grL 240 (386)
T d1muwa_ 161 FDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKL 240 (386)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 99999999972999369982057887553310769999999997299531346644465330477715899999873867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~vhlNd~~~~~~D~DL~fG~~~~~~~~~~~~~L~~~Gy~G~~~FD~k~~R~~~~~~~~~~~~~~m~~~a~~~~~a~~~~ 320 (386)
T d1muwa_ 241 FHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILKERAAAFR 320 (386)
T ss_dssp CCCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHHHTCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34211533477743456676401789999999999559988330540367788766799999999999999999999865
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~d~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~Le~l~~~~l~g~r 386 (386)
T d1muwa_ 321 ADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFERLDQLAMDHLLGAR 386 (386)
T ss_dssp HCHHHHHHHHHTTHHHHTSCSCTTCHHHHHHCGGGTTTCCHHHHHHSCCCHHHHHHHHHHHHHTCC
T ss_pred HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 499999999986554113544445256677776520013813343255029999999999971379
|
| >d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 7, HDAC7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29100.37 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~Tg~vyd~~~l~H~~~~g~~~~HPE~p~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~ 80 (386)
T d3c10a1 1 TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPL 80 (386)
T ss_dssp CCTTCEEEECCGGGGGCCCTTCCGGGCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTT
T ss_pred CCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCHH
T ss_conf 99887799977788557899999899897989999999999966996578376789899999988299999999862605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rppGHHA~~~ 160 (386)
T d3c10a1 81 SRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHS 160 (386)
T ss_dssp CSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTT
T ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43112233321034555420367777666888645761089999998457888776542376544441244323545655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g 240 (386)
T d3c10a1 161 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEG 240 (386)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66873433288999999986214677437742467887604676425543354333566545678889887638877766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~~~~ 320 (386)
T d3c10a1 241 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGA 320 (386)
T ss_dssp CEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 64456410136799983999999999999999866998899968825334675356367558999999999999873998
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 386 (386)
T d3c10a1 321 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 386 (386)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799968888865899999999999838999987841013588888999999999999886076329
|
| >d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Chitosanase species: Bacillus sp., strain k17 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29099.52 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~pfp~~~~y~~~~~~~~~~q~~~~~~~~~~y~~wk~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~t~SEGqgYGM 80 (386)
T d1v5da_ 1 AKEMKPFPQQVNYAGVIKPNHVTQESLNASVRSYYDNWKKKYLKNDLSSLPGGYYVKGEITGDADGFKPLGTSEGQGYGM 80 (386)
T ss_dssp CCCSSCSCCCCCCTTCCCCCSSCHHHHHHHHHHHHHHHHHHHEECCCTTSTTCCEECCCCCCCBTTBCCCEEHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH
T ss_conf 98788898753536774888667899999999999999999853367777764001465556788898753005888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~Av~~~~~~~nd~~~Fd~lw~wt~~~l~~~~~~L~aW~~~~~~~~v~d~nsAtDgDl~iA~ALl~A~~~Wg~~~~~~Y~ 160 (386)
T d1v5da_ 81 IITVLMAGYDSNAQKIYDGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYL 160 (386)
T ss_dssp HHHHHTBTTBTTHHHHHHHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99998476775619999999999999860679998668857999877799988768999999999999774885178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~A~~ii~~i~~~~~~~~~~~l~~g~~~~~~~~~~npSY~~p~~~~~fa~~~~d~~W~~v~~~~~~ll~~~~~~~~~~tG 240 (386)
T d1v5da_ 161 KEAQDMITKGIKASNVTNNNQLNLGDWDSKSSLDTRPSDWMMSHLRAFYEFTGDKTWLTVINNLYDVYTQFSNKYSPNTG 240 (386)
T ss_dssp HHHHHHHHHTHHHHHBCTTSSBCSSTTSCTTCCCBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998750578887426888788898755831054999999997458972999999999999998763188768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 L~PDw~~~~~~~~~~~~~~~~~~~~~~~~ydA~Rvpl~la~d~~w~g~~~a~~~~~~~~~f~~~~~~~~~~~i~~~y~l~ 320 (386)
T d1v5da_ 241 LISDFVVKNPPQPAPKDFLDESEYTNAYYYNASRVPLRIVMDYAMYGEKRSKVISDKVSSWIQNKTNGNPSKIVDGYQLN 320 (386)
T ss_dssp CCCSSEETTTTEECCTTGGGSCTTTTSBCTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCGGGCCSCBCTT
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99631212786767765677777888724119999999998886427804789999999999986147976556632147
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 G~~~~~~~~~~~~a~~~~aa~~~~~~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~lsGn~~~p~p 386 (386)
T d1v5da_ 321 GSNIGSYPTAVFVSPFIAASITSSNNQKWVNSGWDWMKNKRERYFSDSYNLLTMLFITGNWWKPVP 386 (386)
T ss_dssp SCBCCCSCCHHHHHHHHHTTTTCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 742688875899999999862873169999998733357778857999999999997388888998
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=100.00 E-value=0 Score=29037.54 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (385)
T d1ejxc2 1 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQV 80 (385)
T ss_dssp EEEEEEECSCTTHHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999866973663686688877777573888899999998655078331052116669868999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~AGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfvedT~~a~~gRtiH~~H~EGaGGGHAPDii~~~~ 160 (385)
T d1ejxc2 81 AAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACA 160 (385)
T ss_dssp HHTCSEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEESSTTSTTSSSTTTGGGGGG
T ss_pred HHHHCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC
T ss_conf 71132144775235675899999876754183589760535400200214887579730332025677786631567624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQaMGRvGE 240 (385)
T d1ejxc2 161 HPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGE 240 (385)
T ss_dssp CTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTSSSCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 68535789998878866736764772332046898875677664233530123267776345743442153332576774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 vi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMFGA~G~A~~~tSvtFVSqaAid~gi~ 320 (385)
T d1ejxc2 241 VILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMFGALGSARHHCRLTFLSQAAAANGVA 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCGGGSHHHHHHHCEEEECHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCEEEECHHHHHCCCH
T ss_conf 11020787999987603687777777624777666662368188768455135323456555457138856888867684
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~LgL~K~lvpVkn~R~ItK~DM~~Nda~P~IeVDPeTYeV~aDGelltcePA~~LPLAQRYFLF 385 (385)
T d1ejxc2 321 ERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTYEVRVDGELITSEPADVLPMAQRYFLF 385 (385)
T ss_dssp HHTTCCSEEEECCCTTTCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSSCSSSTTTCCC
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 77388760686148887787786015789982789997689989999046765667631110176
|
| >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHH phosphoesterases superfamily: DHH phosphoesterases family: Exonuclease RecJ domain: Exonuclease RecJ species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29030.75 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~l~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~~~ 80 (385)
T d1ir6a_ 1 PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEA 80 (385)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
T ss_conf 97676735899999999999977997999927786067999999999998899759987786656998689999998533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~~~~~~~~~iv~~~~~~~~~~~~~gaGva~~l~~~l~~~~~~~~~~ 160 (385)
T d1ir6a_ 81 SDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPL 160 (385)
T ss_dssp CSEEEESSCCTTCGGGHHHHTTSCCEEEEECCSCCCSSCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 77699823652203667667632872321465465657401212157678850101302578999999886432442202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~~~~~di~f~i~P~iNA~GRl~~a~~a~~lL 240 (385)
T d1ir6a_ 161 EYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLL 240 (385)
T ss_dssp GGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCCSCSHHHHHTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 44455456455455401367889987777785114558899997542213201221111131113334444310212444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~~~~~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~~~~kGS 320 (385)
T d1ir6a_ 241 LTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGT 320 (385)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTSSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 41236789999999887777899999999999875430335159995377662022045899999729978999667387
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~Rs~~g~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F~~~l~~~~~~~~~~~~~~~~~d~ 385 (385)
T d1ir6a_ 321 VRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL 385 (385)
T ss_dssp EECCSSCCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHSSCCTTTTCCSTTC
T ss_pred EECCCCCCHHHHHHHHHCHHHCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 76899978999999874530137991670467974989999999999999856353220442479
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29029.65 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~~~~~~~~~~fG~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~ 80 (385)
T d1rrma_ 1 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL 80 (385)
T ss_dssp CCEEEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred CCCEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99526669972798689999999999769997999989655658089999999987598599986826997989999886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtagTgse~t~~avi~~~~~~~ 160 (385)
T d1rrma_ 81 GVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR 160 (385)
T ss_dssp HHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTCSEEEEEETTTTE
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54303588889866988422699999999638753026665043222478774674366544643234442224444331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s~~~~p~~~~~a~~a~~~~~~~l~~~~~~~~~~~~ 240 (385)
T d1rrma_ 161 KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE 240 (385)
T ss_dssp EEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred EEEEEEEECCCCCCCCHHHHHCCCCHHEEEECHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01355420135322006777327980126400364664112111113320001277899999999752432000056899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~a~~~ag~~~~~~~~g~~hai~~~l~~~~~i~HG~a~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (385)
T d1rrma_ 241 EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARN 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999976651676400053203200233457510001436889987335269999999998388656999899999
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~i~~i~~~~~~lglP~~L~d~Gv~~~~l~~ia~~a~~~~~~~~nP~~~t~~di~~il~~a~~g~ 385 (385)
T d1rrma_ 321 AAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAWEGG 385 (385)
T ss_dssp HHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTCGGGGGCSSCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999859999988829899999999999985720059994389999999999997489
|
| >d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Restriction endonuclease-like superfamily: Restriction endonuclease-like family: Hypothetical protein VC1899 domain: Hypothetical protein VC1899 species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=29028.25 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~m~~hv~~i~~~~~~n~~p~l~~~~~p~~~v~i~t~~~~~~~e~L~~~lk~~~i~~e~~~i~~~~d~~~I~~~l~~~~~ 80 (385)
T d1xmxa_ 1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRELAE 80 (385)
T ss_dssp CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96289999963772435568654788886699996743699999999999846986168745875576999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~v~lN~TGGTK~Msl~ay~~~r~~~~~~~Y~d~~~~rl~~l~~~~~~~~~~~~~i~i~d~l~~~~~~~~~~~~ 160 (385)
T d1xmxa_ 81 TLKARGEEVKFNASCGLRHRLLSAYEVFRSYHWPIFVVEPNSDCLCWLYPEGNNDTQVQDRITIADYLTIFGARGEFNEH 160 (385)
T ss_dssp HHHHHTCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEECTTTCEEEEEESTTSCCEECCCCCCHHHHHHHTTCEEECC--
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCC
T ss_conf 62203873999916766888999999998559846999769966999667767675577878899999984033000566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~el~~~l~~ln~~~~~~~~~~~~~~~~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~l~F 240 (385)
T d1xmxa_ 161 QLSPQLDQQLYQLGERWASNALELGPGLATLNYLATTCRKEQKLDVELSDKQQGYRELNLLLSDLVEAKIASYENGILTF 240 (385)
T ss_dssp --CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSEEECCHHHHTCHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 68866789999999998634776767999999986512212010244462244536788999988753432214863231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~a~~Fl~G~WLE~yv~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDv~~~~~~~l~~IECKt~~~~~~~~~ 320 (385)
T d1xmxa_ 241 INEEARRFANGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRDDGDD 320 (385)
T ss_dssp SSHHHHHHHHTTHHHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCCCC-CCC
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf 41778743588089999999999877540445026767798326888765532689999799999999568887754578
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~l~kl~~l~~~lgG~~~r~~LVs~~~~~~~~~~ra~~~~i~vI~~~~l~~l~~~L~~w~~~~~~~ 385 (385)
T d1xmxa_ 321 TLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLTQWFKAAGGN 385 (385)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEESSCCCHHHHHHHHHHTCEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999998289532499999058847799999866949983888899999999999973799
|
| >d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Ovalbumin species: Hen (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29027.13 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~l~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~Laml~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T d1uhga_ 1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVH 80 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHHTCTTCTTCSHHHHTTTTSCTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHH
T ss_conf 96789999999999999861396986998889999999999986775899999997388877664301444203388999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~l~v~~~~~~~~~f~~~~~~~y~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~i~~~ 160 (385)
T d1uhga_ 81 SSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNV 160 (385)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEEEEEEEETTSCBCHHHHHHHHHHCSSCEEEECCTTTHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999963899873699998888866765448899999987097334564311799999999999998706886566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 v~~~~l~~~t~l~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~~~~~~v~Lpy~~~~~s 240 (385)
T d1uhga_ 161 LQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMS 240 (385)
T ss_dssp SCTTSSCTTCCEEEEEEEEEEECEEECCCGGGCEEEEECCCC--CEEEEEEEEEEEEEEEEEGGGTEEEEEEEBTTSSEE
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHEECCCCCCCCCCCCCCEEEECCCCCCCEE
T ss_conf 78667896544114542799542046664555540664258994353002001021234545566817887132489758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 m~iilP~~~~~l~~~~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~adfs~is~~~~ 320 (385)
T d1uhga_ 241 MLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAES 320 (385)
T ss_dssp EEEEEESSTTCHHHHHHHCCHHHHHHHTSTTTCEEEEEEEEEECEEEEEEEEHHHHHHHHTCCGGGSTTCCCTTTBCSTT
T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCEEHHHHHHHCCCCHHHCCCCCCCCCCCCCC
T ss_conf 99997776676155554213556999763430424599997104876311007998875598111068787656779998
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 l~vs~i~q~~~i~v~E~Gt~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 385 (385)
T d1uhga_ 321 LKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385 (385)
T ss_dssp CCEEEEEEEEEEEECSCEEECCCHHHHHHHHTTCCCEEECCSCEEEEEEETTTCCEEEEEEESCC
T ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 06552788999998998713010120001367899779913999999998999968999994398
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29024.30 Aligned_cols=1 Identities=0% Similarity=-1.955 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t 80 (385)
T d1cf3a1 1 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET 80 (385)
T ss_dssp CHHHHSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEEC
T ss_pred CCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 96605218912126996889998968899999999987879829998889998787832048767755218978768605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~ 160 (385)
T d1cf3a1 81 VELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNA 160 (385)
T ss_dssp CCCTTTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCG
T ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 57677894365221002466512331353215866611210036878676336688999887610787311221122355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl 240 (385)
T d1cf3a1 161 SCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNL 240 (385)
T ss_dssp GGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCC
T ss_conf 55677543334565545556878999999999769997677555665533223332322333223556533732107743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~ 320 (385)
T d1cf3a1 241 QVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPV 320 (385)
T ss_dssp EEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCEEEECCCHHHCHHHHHHCCCCCHHHHHHCCCCEEEECCC
T ss_conf 33377368888871899654799999986899789999688899868535499999865998378998779986998974
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
-
T Consensus 321 g~~~~~~~~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~~~ 385 (385)
T d1cf3a1 321 GLCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 385 (385)
T ss_dssp TCTCBSCGGGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04206887766614665542660571742575786212675148799985366789998775449
|
| >d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp175a1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29022.10 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~dp~~~~~~~~~kyg~v~~~~~~~p~v~v~dp~~v~~il~~~~~~~~~~~~~~~~~~~G~gl~ 80 (385)
T d1n97a_ 1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLL 80 (385)
T ss_dssp CEECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEECCTTCCEEEECSHHHHHHHHHCTTEECCSHHHHHHHHHHCSSTT
T ss_pred CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 98888553538799987799999999999789789996998799989999999997289977688607779998579500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~g~~wk~~R~~l~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~vdl~~~l~~~~~~vi~~~~fg~~~~~~~~~~~~~~ 160 (385)
T d1n97a_ 81 TDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKA 160 (385)
T ss_dssp TCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCCSCCEEHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 37979999999997234144432231025778999987650455335788888875520255553465432015666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~~l~ag~dTt~~~l~~~l~~L~~~ 240 (385)
T d1n97a_ 161 LDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHR 240 (385)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHGGGTTSTTGGGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 56777777666665455899999986515678899887511104697889999999988765024211211025676541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 P~v~~~l~~E~~~~~a~i~EtlRl~p~~~~~~r~~~~d~~~~g~~i~~g~~v~~~~~~~~~~~~~dp~~F~PeRf~~~~~ 320 (385)
T d1n97a_ 241 PDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG 320 (385)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHHHHSSTTTTSCCTTHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02333333333332101201122333332212233322233333333333333332210011478876638432376567
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~lpFG~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~p~~~~~~r~r~ 385 (385)
T d1n97a_ 321 TPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385 (385)
T ss_dssp CCBTTBCTTCCSTTCCTTHHHHHHHHHHHHHHHHTTCBCCCCCCCCEEESSSEEETTCCEECCBC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCEEEEEEC
T ss_conf 88887067899765690399999999999999998378896898732460578646981788609
|
| >d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 1a, transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29021.63 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~yp~~~d~~~~e~i~~~~~~~~~~~~~~G~~I~tTiD~~lQ~~~e~~~~~~~~~~~~~~~~~~a~vv~d~~TG~IlA~v 80 (385)
T d2c5wb1 1 SNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQL 80 (385)
T ss_dssp CCSCGGGHHHHHHHHHHHHHHHSCCTTTSCEEEEECCCHHHHHHHHHHHHCSSSCCCSCSSCEEEEEEEETTTCBEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 99748999999999998777644232069987994789999999999997534312678663289999988999399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~yaaAle~g~~~~~~~~~~d~~~~~~~~~~~~~n~~~~~~G~itl~~al 160 (385)
T d2c5wb1 81 GARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYAL 160 (385)
T ss_dssp CCSSCCCCCTTCCCTTTCCCSCCGGGHHHHHTHHHHHHTTSCSBSSCEEEESSCBCTTSSCBCCCTTSCCCEEEEHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
T ss_conf 55655544434543201143467740447899999986497002331123454211136866422465565136650333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~S~N~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~tplqla~aya~iAngG~~~~P~~i~~i 240 (385)
T d2c5wb1 161 QQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKV 240 (385)
T ss_dssp HTTCHHHHHHHHHHHCHHHHHHHHHTTTCBCSSCCGGGGSCCCCSSCCSSBSCCHHHHHHHHHHHHTTSEEECCBSEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 31655300345666403368999997087545653223445441135885256899999988765147643221430122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~WFv 320 (385)
T d2c5wb1 241 VFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFA 320 (385)
T ss_dssp EETTSCEEECCCCEEECSCHHHHHHHHHHHHHHHHHSTTGGGCCTTCCCEEEEEECCCCHHHHHHTCCCSSCEESCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 12344422123455420477888888764110135775221356565313565565666665444435564222205999
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 G~~P~~~~~Vwvg~~~~~~~~~~~G~~~Aapi~~~im~~~~~~~~~~~f~~P~gi~~~g~~~~~~ 385 (385)
T d2c5wb1 321 GYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 385 (385)
T ss_dssp EECSSEEEEEEEECSSTTSCEEGGGGGHHHHHHHHHHHHHHSSSCCCCCCCCTTEEEETTEEEEC
T ss_pred ECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECC
T ss_conf 55998899999940788887688722889999999999997269977799999867767089529
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=100.00 E-value=0 Score=29024.99 Aligned_cols=1 Identities=0% Similarity=-1.489 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ipmrDG~~L~~~v~~P~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~ 80 (385)
T d2b9va2 1 HDPLSVQTGSDIPASVHMPTDQQRDYIKREVMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMRE 80 (385)
T ss_dssp CCTTTCCCSCSCC---------CCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSTTCSSHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99754345777786665887667797686889989999889999997189996018999816788876556775322354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~ 160 (385)
T d2b9va2 81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGF 160 (385)
T ss_dssp HSCGGGHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHH
T ss_pred CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH
T ss_conf 43057999996896899976774368898512045210011220155787799999999856674446410045667899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (385)
T d2b9va2 161 TVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFAT 240 (385)
T ss_dssp HHHHHHTSCCTTEEEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 99999854677634999812456532101234773011210899986541014586411114678889987252445320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~~~g~~~~~~~l~~~~~~~~~~LiiGPw~ 320 (385)
T d2b9va2 241 QAGLDQYPFWQRMHAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWR 320 (385)
T ss_dssp HTTGGGCHHHHHHHHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSCSSHHHHHHHHHHHTTCSSCEEEEEESCC
T ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 10442134566530376543122315846888633556762899841368765433789999875156888579993776
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
-
T Consensus 321 H~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~~G~~~Wr~~~~W 385 (385)
T d2b9va2 321 HSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYNTGDQKWDYYRSW 385 (385)
T ss_dssp TTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 77866566666664567520013689999999999708999999999879998789827418979
|
| >d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29028.56 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 e~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisie~~~~~~~~l~VHIADva~~v~~~s~Ld~~A~~R~~S~ 80 (385)
T d2ix0a4 1 EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 80 (385)
T ss_dssp SCCCCCCCCCCCCCCCCEECTTSCCBEEECSSCCCCCEEEEEEEEGGGEEEEEEEECCGGGTSCTTSHHHHHHHHHCBCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHCCCE
T ss_conf 99875431001467874208899989976999942665589999689919999998777887598999999999968838
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~l~~~g~i~~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~ 160 (385)
T d2ix0a4 81 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 160 (385)
T ss_dssp EETTEEECSSCHHHHHTTSSCCTTCEEEEEEEEEEECTTCCBCSCCEEEEEEEECCCEEEHHHHHHHHTTCSSCCCSSHH
T ss_pred ECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 89999778898166420014566532047778999856761401336876789726757499999997403334532022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~l~~L~~~~~~lr~~R~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lieE~MilaN~~va~~l~~~~~~~i 240 (385)
T d2ix0a4 161 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 240 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCEEEEEECTTSCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 59999999999999999874167621343022010244455413787404088888888887766899999997348873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~R~~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~a~ys~~~~~H~gLgl~~Y 320 (385)
T d2ix0a4 241 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 320 (385)
T ss_dssp EEEBCCSCGGGHHHHHHHHHHTTCCCCTTGGGSHHHHHHHHHHHHHSSSSHHHHHTGGGCCCCEEESSCCCBTTTTBSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf 22222357477899999999710366855334625677776520355416789999998643103798877413084612
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------------V 864 (1006)
=
T Consensus 321 thfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~ei~~~~~~~~~~a~~aer~~~~~~~~~~lk~~ 385 (385)
T d2ix0a4 321 ATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 385 (385)
T ss_dssp BCCSCTTTBHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 01586776377899999999997699999889999999999999999999999999999985789
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=100.00 E-value=0 Score=28948.90 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~pi~~~f~D~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~ 80 (384)
T d2omza2 1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80 (384)
T ss_dssp CSCCCCSSCEEHHHHSCSHHHHHHHHHHTTCSSTTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 97652589998331320889999999986777778863988957878998999898776242458999989681881798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (384)
T d2omza2 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160 (384)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86334771101030134333222211123343334433222222222222222211213466313100232222112222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 240 (384)
T d2omza2 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 240 (384)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 21232201111245421101122243332110022353233303577447878644457787888877777896134325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~ 320 (384)
T d2omza2 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320 (384)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCC
T ss_conf 65341004467447877535546687754567445787732356522223323233333221000024676777788778
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 321 DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384 (384)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 9845366898898989899899974670899999898979958998000039999996397895
|
| >d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe {Aeromonas hydrophila [TaxId: 644]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Aerolisin/ETX pore-forming domain superfamily: Aerolisin/ETX pore-forming domain family: (Pro)aerolysin, pore-forming lobe domain: (Pro)aerolysin, pore-forming lobe species: Aeromonas hydrophila [TaxId: 644]
Probab=100.00 E-value=0 Score=28955.61 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ip~~~~~~~~~~d~~~~~~~~v~~~~~fi~pls~LAh~LGY~W~gg~~~q~Vged~~~~r~gd~w~~~~~n~g~c~gyrc 80 (384)
T d3c0na2 1 IPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRC 80 (384)
T ss_dssp CCCCCCEEECSCCHHHHHHHHHTCTTTTHHHHHHHHHHHTBSCCSCTTCSSTTCSEEEEECSSSEEEEECCCSCCCSTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCEECCCCEEEECCCEEEEECCCCCCCCCEEE
T ss_conf 98654411389987887888762870011569999865073677677874114452566438767996256899774451
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~er~ki~~~nf~~~i~~~~f~~G~~~v~~~epi~t~s~~a~N~sDt~qt~itvt~~~t~T~TWSkT~s~~~s~sV~ik~s 160 (384)
T d3c0na2 81 GDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNK 160 (384)
T ss_dssp TSCCEEEEEEEEEEEEEEEEEECCCSEEEEEEEEEEEEEEEECSSSCBCCEEEEEEEEEEEEEEECCSSSGGGTCBCSSC
T ss_pred CCCCEEEEEEEEEEECCCCEECCCCEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_conf 56215898756778657644427818844542899999997389886158899999998423898654778889999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 f~iPligeteisvs~S~n~s~s~s~t~S~T~T~t~s~~VtVPP~Skv~V~i~l~rs~idVPYt~t~~I~Ydv~~~gFLRw 240 (384)
T d3c0na2 161 FKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRW 240 (384)
T ss_dssp EECCCCSSSCCCCEECTTSCGGGCCEEEEEEEECCEECCCBCTTEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEBCT
T ss_pred EECCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_conf 85663514469999976788850675137899888876301898359999999866873556899999998987116741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 gGNa~~~hp~~Rpt~~~tf~~g~~~~~~~~i~yq~d~r~ipg~~~~wdW~w~~~~~g~~~m~~~~~~~~R~~~s~isG~f 320 (384)
T d3c0na2 241 GGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDF 320 (384)
T ss_dssp TCCCBTTCCSSCCEEEEEEEESSCCCSTTCHHHHHHTTTCGGGCSSBCHHHHHHHHCHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 56213448988886426886057888743411243202357876511364155553567777777664222346434217
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~a~sq~~g~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 384 (384)
T d3c0na2 321 SAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPAA 384 (384)
T ss_dssp EEEEEEECCCEECCCEEC-----------------CCEEECCCCHHHHHHHTCEEEEEEEEECC
T ss_pred EEEECCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEECC
T ss_conf 8850211015524711158068642346664467863897347977886367674389976389
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28955.40 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~ 80 (384)
T d1cs1a_ 1 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHL 80 (384)
T ss_dssp CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred CCHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 97404214689898888998259844888746089776568743189887899999999998299706884372799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~i 160 (384)
T d1cs1a_ 81 VTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHL 160 (384)
T ss_dssp HHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHH
T ss_pred HHHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEECCHHHHHHH
T ss_conf 98631445550013465200246665421122333222356788799986216666279971456653010457887554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~ 240 (384)
T d1cs1a_ 161 AREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 240 (384)
T ss_dssp HHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 54148679971553474546664468889998063003667774443345782665420011221122024500389996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~ 320 (384)
T d1cs1a_ 241 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFT 320 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 12111478998999999999996445886446641223301489998750689861268752466999999998389155
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~~g 384 (384)
T d1cs1a_ 321 LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG 384 (384)
T ss_dssp EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC
T ss_pred ECCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5626687540430661015100799999866989296999865099999999999999986079
|
| >d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylococcus capsulatus [TaxId: 414]
Probab=100.00 E-value=0 Score=28954.19 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~p~~rr~seYE~vT~~~qp~p~~~~~~~~~~~W~~~~~~g~p~y~~ 80 (384)
T d1mtyb_ 1 ERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGN 80 (384)
T ss_dssp CCCCTTTCHHHHHHHHHHCCSSCSCSCCCTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCG
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 98667998778899861277886667776424467577896643510227889956617767647764613899998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~Tal~~~DW~~frDP~q~~yrtY~~~qae~e~~v~~~~d~~~~~~~~~~l~~~w~~~~L~~~l~p~r~~E~ga~~~~a~ 160 (384)
T d1mtyb_ 81 ETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQ 160 (384)
T ss_dssp GGCSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTHH
T ss_pred CCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 64313447746535801889999999999999999999999996696211999999999999860240799999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~~k~~W~~dp~wQg~R~~vE~~l~~~~Dw~E~~ 240 (384)
T d1mtyb_ 161 GAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESA 240 (384)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCSTTHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98646868999999998766888999999999999874789862337998886048065779999998987114499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~ 320 (384)
T d1mtyb_ 241 FSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWL 320 (384)
T ss_dssp HHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99876488644899999999999997698047999999998999999899999999984585332668999999999999
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~a~~Al~~~~pi~s~~p~~~~~~~~~~a~~~rv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
T d1mtyb_ 321 EPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLAGLK 384 (384)
T ss_dssp HHHHHHHHHHGGGGGGSCTTSCCHHHHHHHHHHHHHHHHHHTGGGGTCCCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999987687610677878889999999999987653024103665458899999972369
|
| >d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitin ABC lyase I species: Proteus vulgaris [TaxId: 585]
Probab=100.00 E-value=0 Score=28950.25 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~p~~~~T~~~~~~~d~ir~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ng~~~g~pi~~~~~~ 80 (384)
T d1hn0a1 1 EPEIQFHNVKPQLPVTPENLAAIDLIRQRLINEFVGGEKETNLALEENISKLKSDFDALNIHTLANGGTQGRHLITDKQI 80 (384)
T ss_dssp CCCCCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHSSCCCTTCCCCCCHHHHHHHHHTTCCEECTTSCEECCCEECTTGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98777677899888896788899999999999872688652157777899999999985686456874247755562012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~aY~~~g~~~~~~el~~~i~~~~d~l~dQg~~~gS~~~~~nww~~~i 160 (384)
T d1hn0a1 81 IIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTKHLLDQGFVKGSALVTTHHWGYSS 160 (384)
T ss_dssp GGGCGGGSCHHHHHHHTTSEEHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCSTTCCCSCCTTHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHH
T ss_conf 20577676533344431266899999999999999747887322399999999999999872320378777673112238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 r~~~~a~~Lm~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~D~~~t~~~~~l~~~Ll~~d~~e~i~~l~~l~ 240 (384)
T d1hn0a1 161 RWWYISTLLMSDALKEANLQTQVYDSLLWYSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFS 240 (384)
T ss_dssp HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHGGGGHHHHTCCCCTTTTCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 77988999987753226789999999987446864245676677850378999999999999985599199999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~~~~~vt~G~~dGfk~DGS~~qH~~~Y~gYg~~~l~~~~~~~~ll~gT~f~~~~~~~~~l~~~l~~~~~~~~~~~~ 320 (384)
T d1hn0a1 241 HYITGALTQVPPGGKDGLRPDGTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVSAWIYSNPEVG 320 (384)
T ss_dssp HHHHHHHHSCCSTTCSEECTTSCEEETTEECHHHHHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHHHHTBSSBBC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99887750478887886457887550678774269999999999999967998767989999999999999998454466
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~GR~p~~~~~~~~~~~a~~~~al~g~~~~D~~~A~~ylrl~~~~~~~~~~~~~~~~~pa~~ 384 (384)
T d1hn0a1 321 LPLAGRHPFNSPSLKSVAQGYYWLAMSAKSSPDKTLASIYLAISDKTQNESTAIFGETITPASL 384 (384)
T ss_dssp GGGCTTCTTSCCBGGGGHHHHHHHHTTSTTSCCHHHHHHHHHHHTCCHHHHHHHHSSCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
T ss_conf 5555777899875543189999997078866799999999987347785416676158787879
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=100.00 E-value=0 Score=28949.42 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 1 KAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98989898887999999999999739946568989999999999997969399967889999999998499988989981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ 160 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAH 160 (384)
T ss_dssp SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEC
T ss_conf 43223221222222233211233444435665441020023332222333322233443110222333356553104033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aai 240 (384)
T d1b9ha_ 161 GARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV 240 (384)
T ss_dssp TCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH
T ss_pred CCCCCCEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 60048983675520000024555434433431243224999998899985689876666432312356632235301213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~ 320 (384)
T d1b9ha_ 241 LRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR 320 (384)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 33343211321123433446666664225666443222222222333310001000222599999999987998553072
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
-
T Consensus 321 plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~~ 384 (384)
T d1b9ha_ 321 AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVARA 384 (384)
T ss_dssp CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 2213978885488744433344679899999839798647999998999999999999999609
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=0 Score=28945.98 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 92538757788999987610329999999980895599989999999997899999999999999734850206578987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~ 160 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQ 160 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTTBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC
T ss_conf 57787661277877678888705575441213325522344779999999999754982451322078898887777655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~ 240 (384)
T d2fvka2 161 GLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHH 240 (384)
T ss_dssp TCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHHCCCCC
T ss_conf 98774332454453213678999999887519607722335612367899853049978998376776146301024442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~ 320 (384)
T d2fvka2 241 GEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRA 320 (384)
T ss_dssp ------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC
T ss_conf 22111223333222122223554310137516976999987789999977447964279627888788883355333333
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 321 FDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp EEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 3433345676310999974599899999999986489899999999996999999499998998
|
| >d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Ammonium transporter superfamily: Ammonium transporter family: Ammonium transporter domain: Ammonium transporter AmtB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28879.98 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~g~~~~~~ 80 (383)
T d1u7ga_ 1 AVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLM 80 (383)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCSSSCCCSTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHH
T ss_conf 97576459999999999999999999998611144889999999999999999886034867868489988677750542
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~~g~l~~lG~~Dfa 160 (383)
T d1u7ga_ 81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFA 160 (383)
T ss_dssp GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCHHHHEECCCCCCCCCCCEECC
T ss_conf 15765321222211567757633133310231103334665026753045676502156587420488753357863016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Gs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~ 240 (383)
T d1u7ga_ 161 GGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAI 240 (383)
T ss_dssp CTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 74366404209899888753875445656565678146667899999999873445435520588999998776788999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G 320 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG 320 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 99999998735987799999886545540246755346156899886210778899999986601366465670321368
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
|
T Consensus 321 i~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~gLRV 383 (383)
T d1u7ga_ 321 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383 (383)
T ss_dssp HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999988998267444665654541268999999999999999999999999999984728769
|
| >d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: ArgJ-like domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=0 Score=28878.26 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 sPkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~ 80 (383)
T d1vz6a_ 1 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEEN 80 (383)
T ss_dssp CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf 99859999999536679998689999579976999973687530151998987526884299995374111115888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~i~~~~~~i~G 160 (383)
T d1vz6a_ 81 AREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVG 160 (383)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEE
T ss_conf 99999876553045753145512420101464113344332112232343366544453066420258999720424777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 iaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~~~~~~f~~aL~~v 240 (383)
T d1vz6a_ 161 IAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTA 240 (383)
T ss_dssp EEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 86014320555452478999615567688999999864145000654588887758999845875321078777778899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpNWGRI~aAiG~~~~~~~~d~~~i~i~ 320 (383)
T d1vz6a_ 241 ALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIR 320 (383)
T ss_dssp HHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHTCTTCTTCCTTTCEEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEEE
T ss_conf 99999998636533225899998058999999999999752299998873458847777766423567766662425999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad 383 (383)
T d1vz6a_ 321 FGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 383 (383)
T ss_dssp ETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC
T ss_pred ECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC
T ss_conf 899999963667887733559999987457848999997888922899907698322102689
|
| >d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylosinus trichosporium [TaxId: 426]
Probab=100.00 E-value=0 Score=28876.94 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~f~~p~~rr~seYE~vt~~~Qp~p~~~~~~~~~~~W~~~f~~G~~~y~~~~ 80 (383)
T d1mhyb_ 1 KRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDWIAGGLDWGDWTQKFHGGRPSWGNES 80 (383)
T ss_dssp CCTTTCHHHHHHHHHHSCSSCSCCCCSTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCGGG
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 99999745888998616788666677656657868789554444202677985651355654783042079999987553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Tai~~~DW~afrDP~q~~yr~Yv~~qaeqe~~v~~~~d~~~~~~~~~~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a~i~ 160 (383)
T d1mhyb_ 81 TELRTTDWYRHRDPARRWHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKYFGALLYSEYGLFNAHSSVG 160 (383)
T ss_dssp CSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 00143663654580088899999989999999999999999669620089999999999986131089999998889998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~~~~~gf~~~~~~~k~~W~~dp~WQ~~R~~vE~~lva~~Dw~E~~vA 240 (383)
T d1mhyb_ 161 RDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWA 240 (383)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCGGGHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 64675899999999988788899999999999877468987056899889844886899999999887317659999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~NlV~e~ll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~R~~~w~~alvk~~l~~d~e~~~~Nr~~lq~Wi~~W~~~ 320 (383)
T d1mhyb_ 241 GHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLAS 320 (383)
T ss_dssp HHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98879986589999999999999759705699999999899999999999999998469522155899999999999999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
-
T Consensus 321 a~~A~~~l~pi~~~~p~~~~~~~~~~~~~a~~rv~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 383 (383)
T d1mhyb_ 321 SVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDVDQKVDAVLAGY 383 (383)
T ss_dssp HHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 999999867876047754431105789999999999885433154176546999999986469
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28876.09 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g 80 (383)
T d1bs0a_ 1 SWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG 80 (383)
T ss_dssp CHHHHHHHHHHHCCGGGCCCCCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 95799999999999819971112457888876998996899987653026678989999999999983898876553467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~ 160 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARL 160 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 40689999999987519983588604422467778760699866885045528776342357875257340578899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~ 240 (383)
T d1bs0a_ 161 LASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS 240 (383)
T ss_dssp HHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 41457774499965787877723315679999886491998303123210377664558771774211245212233465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii 320 (383)
T d1bs0a_ 241 GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQ 320 (383)
T ss_dssp CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBC
T ss_pred CCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 54200321677899860446664244320689999999999985025788888888899998788755986579998879
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~g 383 (383)
T d1bs0a_ 321 PLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG 383 (383)
T ss_dssp CEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 999799999999999999789149897489789998459998677799999999999998649
|
| >d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SAICAR synthase-like superfamily: SAICAR synthase-like family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28873.68 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~r~~~~l~~~~~~Gi~~sv~~l~~~~~~~~L~~~dF~~~~k~~~~~~~~~~~~~~~~fkfk~Y~P~vF~~lR~~fgi~ 80 (383)
T d1bo1a_ 1 KLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID 80 (383)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGTCEEEEEEECBSSSCSSSCSEEEEEEECHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
T ss_conf 94410238999999737988875228996000371003445897347777886779887079983799999999981989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~dy~~Sl~~~~~~~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~~~~ 160 (383)
T d1bo1a_ 81 DQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDG 160 (383)
T ss_dssp HHHHHHHHHSSCCEECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEEETT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEECC
T ss_conf 89999972788654345657767867880699689998579999999999899999998607875787634303787479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~~ql~~D~~fL~~ 240 (383)
T d1bo1a_ 161 VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQ 240 (383)
T ss_dssp EEEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECHHHHHHTTCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 52799998424567765103676158632567675334555204656778764688230799999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~imDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (383)
T d1bo1a_ 241 LKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKS 320 (383)
T ss_dssp HTCCSCCEEEEEEEHHHHHHHHHHHHHHTTTTC-----------------------------------CCSCCTTTSTTE
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78675043675512211112211001124555444555564322345789788302221553346644577765445445
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~vyyiGIIDiLq~Y~~~KklE~~~Ksl~~~~g~~IS~v~P~~Ya~RF~~Fi~~I~~ 383 (383)
T d1bo1a_ 321 HESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT 383 (383)
T ss_dssp EECSSTTEEEEEEECCSCC------------------CCCSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 678997599999999715779689999999999211889896127989999999999998649
|
| >d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Pigment epithelium-derived factor, PEDF species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28871.30 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~~~l~~~~~~~Niv~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~ 80 (383)
T d1imva_ 1 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISS 80 (383)
T ss_dssp CCCCCCCCSHHHHSHHHHHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHGGGCCHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 99866554754458289999999999999999985129698199888999999999998647399999999738999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~l~~~n~i~v~~~~~~~~~f~~~~~~~y~~~~~~~~~~~~~~~~~IN~wv~~~T~g~I~~~ 160 (383)
T d1imva_ 81 PDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARS 160 (383)
T ss_dssp SCHHHHHHHHHHHHTSTTSCEEEEEEEEECTTCCCCHHHHHHHHHHHCCCCEECCSCHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999999998750067763677877886168741668888887623764664354479999999999985075620364
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~t~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mM~~~~~~~~~~~~~~~~~~vv~lp~~~~~sm~ 240 (383)
T d1imva_ 161 TKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSII 240 (383)
T ss_dssp CSCCCSSCSEEEEEEEEEECCEEECCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEE
T ss_pred CCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 33438665124311104423202556533454464234798479830211245514566516655389994137973899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 iiLP~~~~~~l~~l~~~l~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dL~~~L~~lGl~~~F~~adfs~is~~~l~vs~ 320 (383)
T d1imva_ 241 FFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQ 320 (383)
T ss_dssp EEEESSCCSCCHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHTTTTTHHHHSCCCTTTCSSCCCEEE
T ss_pred EEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECEEEEEEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 99962667886787664068899998750642279995021887540246675431343330345674556799947445
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
=
T Consensus 321 v~hka~ieVdE~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~iLF~G~v~~P~~~ 383 (383)
T d1imva_ 321 VEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP 383 (383)
T ss_dssp EEEEEEEEECSCEEECC--------CCCCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred EEEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 789999999888611132222101567899679911999999999999968999995289997
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=28868.95 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 96979995787689999999999828998999826876555300133566677776541133332235541799784568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78866666224012043232443222223222233134554442232001110477533333332222334433222222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 22123357899988886676799999999998599779971230515676666555666510027999999986103454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEHHHHHHH
T ss_conf 20123333037835873785546899747856888999999999986402221111346753899689996359999999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
.
T Consensus 321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~~~~~ 383 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383 (383)
T ss_dssp HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999869997648899999986785357899999879966787999999999999986800489
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28873.13 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 80 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV 80 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCEEECCCCHHHHHHHHHCCCCCEECCCC
T ss_conf 98998978899999999986899789993499874506688778982895776696798769999999859962222676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
T d2v5za1 81 ERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLA 160 (383)
T ss_dssp SEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 63477347643223444200011444554899999999866430011321013455544667999998704626778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v 240 (383)
T d2v5za1 161 TLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV 240 (383)
T ss_dssp HHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCEE
T ss_conf 87654220246302467889999886132212333246762133144154999999987598499368606899609969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ 320 (383)
T d2v5za1 241 LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME 320 (383)
T ss_dssp EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHH
T ss_pred EEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHH
T ss_conf 99988997898799998989899951824899999999999975447754401354408768668556653466775067
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ga~~~g~~~a~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~P~~p~~~~~i~~~~ 383 (383)
T d2v5za1 321 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTT 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGSSCCCCCCSSSCCCCCCCCHHHHHCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 899987999999999862588044302484224655454545605224999987403167779
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28867.68 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~p~~~~~~l~ 80 (383)
T d2ayna1 1 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 80 (383)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98995858898406999999999766999999985145315777645277999999999999865898457799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~c 160 (383)
T d2ayna1 81 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 160 (383)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEEEEECCC
T ss_conf 97376502555672245439999998788999998753203644211101211124667872054022899988883578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~ 240 (383)
T d2ayna1 161 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVN 240 (383)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEECCCCCCE
T ss_conf 96551002231323210221010013456665201100124532376401202346502341453410220120567621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 320 (383)
T d2ayna1 241 AKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL 320 (383)
T ss_dssp CBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEE
T ss_pred EECCCEECCCCEEECHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 33584774687664432146033013321024554432211013667554434542222236533344446789951999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------9
Q 001846 864 --------------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~ 383 (383)
T d2ayna1 321 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383 (383)
T ss_dssp EEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 999999789999977089999999928999899508937999977527998893699999879
|
| >d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Choline O-acetyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=28798.67 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 e~~LP~LPvP~L~~Tl~ryL~s~~Pl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~~R 80 (382)
T d1t1ua1 1 ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNR 80 (382)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
T ss_conf 99998899999999999999985445999999999999999751698179999999987446878607778765016788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~pL~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~~~~~plcM~qy~~lF~t~RiP~~~~ 160 (382)
T d1t1ua1 81 LALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQ 160 (382)
T ss_dssp SCHHHHTCCEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTSSSCCSSSCCCCTTGGGTTTEEEECCSSS
T ss_pred CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEECCCCCC
T ss_conf 78650056612105666876037999999999999999999756656861210224898667899998728670568998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 D~l~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~~~~l~~~ei~~~l~~I~~~~~~~~~~~~~ig~LT~~~Rd~Wa~~r~~ 240 (382)
T d1t1ua1 161 DTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTV 240 (382)
T ss_dssp CEEEECCCSSSSCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCEEEEEECCEEEEEEEEECCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 74665576778898779999899899999998990688999999999999624455556888450555871999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 L~~~~~N~~~L~~Ie~alfvv~LDd~~~~~~~e~~~~~~~l~g~~~~~~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG 320 (382)
T d1t1ua1 241 LLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDG 320 (382)
T ss_dssp HTTSHHHHHHHHHHHTCSCEEEECCCCSSCCCHHHHHHHHHHTTSTTTTTTSCCTTBSEEEEECTTSCEEEEECSTTCCH
T ss_pred HHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
T ss_conf 85596158999999866489992799988701689999986178778998610677873799978986898504676249
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~~~~~I~~a~~~~~~~~~dl 382 (382)
T d1t1ua1 321 IVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNL 382 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCSSSCSCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998640677888887778999658788658899999999999999997349
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28794.31 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~ 80 (382)
T d2bkwa1 1 KSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS 80 (382)
T ss_dssp CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 98656427899788799999727326897769999999999999999985334898719999386899999999998876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~ 160 (382)
T d2bkwa1 81 KAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQA 160 (382)
T ss_dssp TCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHH
T ss_pred CCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCHHHHHH
T ss_conf 07998248997312334434311100133333223677775641579998630110100232112246302441233332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T d2bkwa1 161 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWT 240 (382)
T ss_dssp HHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 01334310256302455322123233557569950566667689750255405999864331035888663011122100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~ 320 (382)
T d2bkwa1 241 PIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVY 320 (382)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEC
T ss_conf 23311345556535677577789999999999876324557999999999999764115532234683011587379970
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~~ 382 (382)
T d2bkwa1 321 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 382 (382)
T ss_dssp CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89989999999978939977877311699899858868997999999999999999997739
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28798.47 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~ 80 (382)
T d1u08a_ 1 PLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLY 80 (382)
T ss_dssp CCCCCCSCCCCCCCHHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98824547799986999999996269978854988999778999999999985599889898677999999999999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (382)
T d1u08a_ 81 GYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT 160 (382)
T ss_dssp SCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99988772378646358889998751035640599731443213455443133200012214335689999731213574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~R 240 (382)
T d1u08a_ 161 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWK 240 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGC
T ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 08998798765454565332012332210243202430320210343345542000123468579985035521478665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV 320 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred CHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE
T ss_conf 11010210137888752022323456433322333222206777789999876300002232037857956894679989
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l 382 (382)
T d1u08a_ 321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 382 (382)
T ss_dssp ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 56888999999999999997999998224527899989889999809999999999998179
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28797.32 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~ 80 (382)
T d1b5pa_ 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEK 80 (382)
T ss_dssp CCCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 93788999848988899999999999967998289999989999889999999999865886899987889999999764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (382)
T d1b5pa_ 81 FRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160 (382)
T ss_dssp HHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTT
T ss_pred HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 44303411265534056778999999999967997989987998477999999845847998554101458999999973
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (382)
T d1b5pa_ 161 ITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (382)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred CCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHCCCCCEEEEECCHHHCCCCH
T ss_conf 78897699989997976600799999999999998590899976641232178988887818997799946346451807
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg 320 (382)
T d1b5pa_ 241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (382)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred HHEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCE
T ss_conf 56699998999999999998750357653222222222233121157899999999862267898876449767568941
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 79968578999999999999997897999572258999699997499999999999999869
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=0 Score=28792.80 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T d1wkva1 1 ALADISGYLDVLDSVRGFSYLENAREVLRSGEARCLGNPRSEPEYVKALYVIGASRIPVGDGCSHTLEELGVFDISVPGE 80 (382)
T ss_dssp CEEEGGGGTTHHHHCCSSTTHHHHHHHHHHTEEECBSSGGGCHHHHHHHHHHTCSEEEBSSSCEEETTTTTTTCCCSCTT
T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEECCCCCC
T ss_conf 96421015677775324278999999986035030579975478999999844553556776531166526210489854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~l~~~~~~~PTPLvrl~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA 160 (382)
T d1wkva1 81 MVFPSPLDFFERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALS 160 (382)
T ss_dssp CEESSHHHHHHHSCSCCEEECCCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHH
T ss_pred EEECCHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 67579899856899998777877888898999985478999876299999999999985268999999858759999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q~~N~~~~~~h~~ttg~E 240 (382)
T d1wkva1 161 AVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTARE 240 (382)
T ss_dssp HHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCHHH
T ss_conf 99998499779996200112222222356861154375105679999876520245754332345430232112112178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 I~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~~i~~Vsd~ 320 (382)
T d1wkva1 241 IFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLE 320 (382)
T ss_dssp HHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHH
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 99996467873167897416654233320101231876623675244444445641024576575646644299997999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
=
T Consensus 321 Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~~~ 382 (382)
T d1wkva1 321 EAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNALE 382 (382)
T ss_dssp HHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf 99999999999819888189999999999998640689998999988897432676426789
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=0 Score=28791.58 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~ 80 (382)
T d1ea9c3 1 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNH 80 (382)
T ss_dssp CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred CCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 97986023886999971220379988786676434555777676678189999985699986799889969770178877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1ea9c3 81 KYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIP 160 (382)
T ss_dssp TTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87754453544366777899999999986264378763013441348325556406876544430013464432235763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~ 240 (382)
T d1ea9c3 161 TYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSI 240 (382)
T ss_dssp SBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 22233344345742301388999999987515653146678743620076566545666554008981588543145532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~ 320 (382)
T d1ea9c3 241 WLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVL 320 (382)
T ss_dssp TTTTTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 13676432212343004667655046421567899999999854020654405520367666312246787999999999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 321 FQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp HHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred HHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf 99971798787755754888999977648878877765389999999999999568975189
|
| >d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Peroxisomal carnitine O-octanoyltransferase, COT species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=28796.88 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 e~Tf~~q~~LP~LPvP~Le~Tl~ryL~s~~pl~~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W~~~~Y 80 (382)
T d1xl7a1 1 ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAY 80 (382)
T ss_dssp CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 96431427799898999899999999986566999999999999999974939999999998740698850587867753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 L~~R~pl~~~~n~~~~~~~~~~~~~~~~~~q~~raA~l~~~~~~f~~~l~~~~l~~~~~~~~plcm~qy~~lF~t~RiPg 160 (382)
T d1xl7a1 81 LDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPG 160 (382)
T ss_dssp TSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCCCEETTEECCCGGGGGTSSEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECHHHHHHHCCCEECCC
T ss_conf 25577864555666766556777885500699999999999999998740365471230998760799997612771689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~D~~~~~~~~~~~~~~~~HIvVl~~g~~ykv~v~~~~~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~WA~ 240 (382)
T d1xl7a1 161 ITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAK 240 (382)
T ss_dssp SSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 98772002355556789886699997893089999329908889999999999997354678887755067656479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~DKs~q~IV~~nG~~G~~~EHS~~ 320 (382)
T d1xl7a1 241 AREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPY 320 (382)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEECSSSC
T ss_pred HHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCH
T ss_conf 99997617842699999987446888613568889858999999963859873327766713899689888987368716
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
-
T Consensus 321 DG~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~A~~~~~k~as 382 (382)
T d1xl7a1 321 DAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAAS 382 (382)
T ss_dssp CTHHHHHHHHHHHHHHHHTTTCCCSCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999999999976127878888887789997577896698999999999999998509
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=0 Score=28792.57 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~ 80 (382)
T d1wzla3 1 VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS 80 (382)
T ss_dssp SCCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 97998420288799997024137998778766643344566655777785899999831999977997899798677875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1wzla3 81 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45776556320236788788999999999752451576321013333333331001037654246643003654566789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1wzla3 161 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 240 (382)
T ss_dssp CSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 74444344556678507799999999999999999758875034334335645556789998752884478620035652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~ 320 (382)
T d1wzla3 241 GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAV 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHH
T ss_conf 02203342023302677899986514764314678888753201643245663123058775536765389799999999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~r 382 (382)
T d1wzla3 321 LFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTR 382 (382)
T ss_dssp HHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 99998089878973730277899995445788988655570899999999999830986488
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=28793.31 Aligned_cols=1 Identities=0% Similarity=-1.988 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~ 80 (382)
T d1j0ha3 1 DLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS 80 (382)
T ss_dssp GSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCHHCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 98899964107779999755312799887766665345557766766785899999867999976998899698876876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1j0ha3 81 NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56877565643278879979999999986423643787752102333344312220368745557742224566545663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1j0ha3 161 PNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM 240 (382)
T ss_dssp CSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 23332356777764440769999999998886766441157984453216645534444433202898522343234512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~ 320 (382)
T d1j0ha3 241 PWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34213554410155310456654303543201221022210113654467662320467777741213488599999999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------9
Q 001846 864 -------------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~r 382 (382)
T d1j0ha3 321 LFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRR 382 (382)
T ss_dssp HHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
T ss_conf 99998179888986863286899880103577888654576999999999999842997586
|
| >d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Xylanase inhibitor TAXI-I species: Wheat (Triticum aestivum) [TaxId: 4565]
Probab=100.00 E-value=0 Score=28717.92 Aligned_cols=1 Identities=100% Similarity=1.931 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~pi~~~~~~~~Y~~~i~iGtpliiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~ 80 (381)
T d1t6ex_ 1 LPVLAPVTKDPATSLYTIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPC 80 (381)
T ss_dssp CCEEEEEEECTTTCCEEEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBC
T ss_pred CCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98798112269988599999769866998998811460678877766562780264235757888887666678778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~~~~~~ 160 (381)
T d1t6ex_ 81 TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKV 160 (381)
T ss_dssp EECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHTC
T ss_pred CEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf 60677838998888799999999653223552025885112202435665444667630210588873157887651376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~ 240 (381)
T d1t6ex_ 161 ANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY 240 (381)
T ss_dssp CSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSS
T ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCCCCCCCCCCEEEECCCCE
T ss_conf 44899554777654237603656633357833777654157874257888778518846615755456763687427734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~~~ 320 (381)
T d1t6ex_ 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320 (381)
T ss_dssp EEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEE
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHEEEE
T ss_conf 97778999999999988751445664211101466677522622565555565431461799975996799770473899
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~~~~~~~~~ 381 (381)
T d1t6ex_ 321 VKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPHFTGCGGL 381 (381)
T ss_dssp EETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCTTCCSCC-
T ss_pred ECCCCEEEEEEECCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 0798489999832556677888973898979848689999899999999877888887688
|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Probab=100.00 E-value=0 Score=28717.84 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 slVVIP~~NEe~~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~ 80 (381)
T d2bo4a1 1 SLVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMN 80 (381)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHH
T ss_conf 98999727885889999999997589814999986999875999999852300113321001110023546578848899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~~l~~~~~~~~i~d 160 (381)
T d2bo4a1 81 TALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQ 160 (381)
T ss_dssp HHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTSSGGGCSC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997088888999758767677999999999876305758986314567882236755899999860201565054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Pl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~~~~l~~~f~~v~~~~f~l~~~~~~~W~~~ 240 (381)
T d2bo4a1 161 PLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ 240 (381)
T ss_dssp TTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECTTCCCCCCSCCGGGGHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 77610104099999862434556567866244999999985974784478778777899999999999999987782363
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~p~~~~g~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (381)
T d2bo4a1 241 HEVVGQPAIHRQEHPHRVPVHIAERVGYDVEATLHRLMQHWTPRQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAAT 320 (381)
T ss_dssp TCCCCSCCCEEECCCCCCCHHHHTCCCSCHHHHHHHHTSSCCHHHHHHGGGSCHHHHHHHHHTTTSCCCTTCCHHHHHHH
T ss_pred CEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 33322012022557445888888752047999999999755777999998569988888987444664778767999999
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (381)
T d2bo4a1 321 YHVLLEHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQQYLYRMLGRYRYQAALEN 381 (381)
T ss_dssp HHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999997301460688871056889999999999976079899999999877787876249
|
| >d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
Probab=100.00 E-value=0 Score=28719.87 Aligned_cols=1 Identities=100% Similarity=1.732 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~p~~~~lvd~~At~~tk~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~sdv~~~tG~yPAv~G~D~~~~~~~~~~ 80 (381)
T d1odza_ 1 VKPVTVKLVDSQATMETRSLFAFMQEQRRHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGDFAAVYGWDTLSIVAPKAE 80 (381)
T ss_dssp CCCEECCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTCCSSCSCCSSSCCHHHHHHSSCCSEEEEEGGGTSTTCTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCH
T ss_conf 98877620597779999999999998648966983355444564436665306667640377744201200135687321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~GgIvt~~WH~~~P~~~~~~~~~~~~~~~d~~~~v~~~lpg~~~~~~~~~~ld~ia~~~~~L~~~~~~ 160 (381)
T d1odza_ 81 GDIVAQVKKAYARGGIITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGR 160 (381)
T ss_dssp CCCHHHHHHHHHTTCEEEEECCCCCTTTGGGCSSTTTTSTTCCSCCSTTTSTTSTTHHHHHHHHHHHHHHHHTCBCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 44999999999779959998730788987777641577643135667504899703699999999999999975540388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~vPVl~Rp~hE~nG~WfwWg~~~~~p~~y~~lwr~~~~~l~~~~g~~Nliwv~sp~~~~~~~~~~~~~~YPGDdyVDivG 240 (381)
T d1odza_ 161 LIPVIFRLYHENTGSWFWWGDKQSTPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEWVDVLG 240 (381)
T ss_dssp BCCEEEECSCSTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHTTSCCCSEEEEECCBCCSSCCHHHHHSSCCCTTTCSEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 76289964210479865667889998999999999999998715986189986478787776444201089988677888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~~l~~~~~~A~~~gKp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~p~~~~i~y~~~W~ 320 (381)
T d1odza_ 241 FDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAPDIEAGLYDNQWYRKLISGLKADPDAREIAFLLVWR 320 (381)
T ss_dssp CEEEECSSSCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEECHHHHHTTCCCTTHHHHHHHHHHHSTTGGGCSEEEECC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 63557888753589999999999999998559951663036667711026765426999999997282222443899985
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
|
T Consensus 321 N~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~dF~~f~~~~~~lf~~dlp~ly~~p~~~~ 381 (381)
T d1odza_ 321 NAPQGVPGPNGTQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDIEQVYQRPTLIV 381 (381)
T ss_dssp CCTTCEEC--CCEECCCCSCCSSHHHHHTSHHHHHHHHHHSTTEECGGGCCSCSCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCHHHHHCCCCCC
T ss_conf 6766556666677763336777634457642899999976960113444807551677779
|
| >d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28718.87 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~l~~~~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l~~~l 80 (381)
T d1by7a_ 1 EDLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAI 80 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSSSCEEECHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCG-GGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 90778999999999999873098985998789999999999986664999999997089987888999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~t 160 (381)
T d1by7a_ 81 NASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDT 160 (381)
T ss_dssp C------CEEEEEEEEEETTSCBCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHTTTSCTTSSCTTSCCTTC
T ss_pred HCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 56798847866000000368732889999999861773020443212599999999999975247754567855679731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~~~~~~~~~~~~~~v~lp~~~~~~m~iilp~~~~~ 240 (381)
T d1by7a_ 161 RMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIAD 240 (381)
T ss_dssp CEEEEEEEEECCCBSSCCEECC---EEEEEETTEEEEECEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEESSCCS
T ss_pred HHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 75611244774211578752356555333689805899516651555543136767499996147970799996277665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGi~~~F~~~~Adfs~is~~~~l~vs~i 320 (381)
T d1by7a_ 241 VSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEV 320 (381)
T ss_dssp SSSSCHHHHHHCCHHHHHHHTSTTTEEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTBSCSCCCCCEE
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 35666776642258899987512114340489965648997550569999856851120445454445678898157667
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~q~~~ieVdE~Gt~aaa~t~~~~~~~~~~~~~~f~~nrPF~f~I~d~~t~~iLF~G~v~~P 381 (381)
T d1by7a_ 321 FHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP 381 (381)
T ss_dssp EEEEEEEECSCBC-----------------CCEEECCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 8889999878842023133200003568999879933998999999999978999994398
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28714.70 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~e~p~~~tedfgFk~l~~~~~~~~~~d~lP~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~ 80 (381)
T d1xipa_ 1 ASSLKDEVPTETSEDFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF 80 (381)
T ss_dssp CCEECCCCCEEEESSCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHCCCCCCCC
T ss_conf 97546667816646530587166212789544589644426899577788999889977999989978786556788862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~ip~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~ 160 (381)
T d1xipa_ 81 KWEKEIPDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL 160 (381)
T ss_dssp SEEEECTTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCCCCEEEEEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 34168998689986189899995897899985100145446554556111021886069996589778999415864444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~ 240 (381)
T d1xipa_ 161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDE 240 (381)
T ss_dssp EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSS
T ss_pred CCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 47752387338926999968968999818982036567788201578867786166899951756999987776666767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~ii~~~~~~~~f~~~~Di~~pfgs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~~~~~~~~~~D~~ 320 (381)
T d1xipa_ 241 VSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSKQVIEPSQDSE 320 (381)
T ss_dssp CCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSSSEEEESSGGG
T ss_pred CCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCEEEECCCC
T ss_conf 76433799982699983035256566776566667517999830056567868999556763456861367489812675
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
-
T Consensus 321 Ra~lP~~~~~d~Dt~piGlalD~ss~~~v~~p~~g~~~~~plP~l~vL~~~G~L~~ww~~~ 381 (381)
T d1xipa_ 321 RAVLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFH 381 (381)
T ss_dssp CCBCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC
T ss_pred CEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEC
T ss_conf 3040357788876531589997124752315788822278998899996987899999879
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=28714.55 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC 80 (381)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
T ss_conf 99878988895697636899999999999999865278765315679999999999999998397945199978858986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~ 160 (381)
T d1elua_ 81 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQ 160 (381)
T ss_dssp HHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCC
T ss_pred HHCCHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 21000233247853899546541132011122334542222322233333205899998640233222123333456531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~ 240 (381)
T d1elua_ 161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR 240 (381)
T ss_dssp BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 10035788987520345321022344334554442212222333333454422122305677741888986396100244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 320 (381)
T d1elua_ 241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQA 320 (381)
T ss_dssp TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 54433333443344432222333223204555433001588744421101456667899998875089769647887653
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~~~ 381 (381)
T d1elua_ 321 GLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADFGP 381 (381)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1899983898899999999996896898668999799955788999999999999996691
|
| >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: alpha-mannosidase domain: Golgi alpha-mannosidase II species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=28720.70 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~q~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~i 80 (381)
T d3bvua3 1 CQDVVQDVPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHI 80 (381)
T ss_dssp CCCSSSCCCCCSEEHHHHHHHCCCCCCCCSSSTTSCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHH
T ss_pred CCHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 94366405766622687886521538999716677512205421476788379993877888002375999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~~l~~l~~~p~~~F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~ 160 (381)
T d3bvua3 81 LSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 160 (381)
T ss_dssp HHHHHHHHHHCTTCCEEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999879997799835389999999749999999999998798799687121463457997999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~fG~~p~~~w~~D~FGhs~~lp~il~~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~ 240 (381)
T d3bvua3 161 QFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYD 240 (381)
T ss_dssp HHHCCCCCEEEECSSSSBCTHHHHHHHTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSS
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 97599973589638887657789999856988699974135542005201466504304666899880457516555668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~p~~~~~d~~~~~~f~f~~~~~~~~~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w 320 (381)
T d3bvua3 241 IPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEW 320 (381)
T ss_dssp GGGTSSSCHHHHGGGCGGGSSTTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 85567887211345442123455777876668766625589999999999999986216887389816668787761037
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~n~~kli~~iN~~~~~~v~i~~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~~ 381 (381)
T d3bvua3 321 DVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRS 381 (381)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSST
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 7888769999999971888881899889999999999987524778877678876788899
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=100.00 E-value=0 Score=28716.67 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~p~~p~~~~~~~~~~~~~~~~~~~~v~i~~rDG~~L~~~v~~P~~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~ 80 (381)
T d1mpxa2 1 TSPMTPDITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKGAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAG 80 (381)
T ss_dssp CCTTSCSSCSSCCCCCCTTCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98989999998777776555866988999899998999999996899973089997567789765656665444320068
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~ 160 (381)
T d1mpxa2 81 DDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMA 160 (381)
T ss_dssp GHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 99999689799998137657889853315201210132006789999999998753588576504560365778889888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~~~~~l~a~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (381)
T d1mpxa2 161 LTNPHPALKVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLE 240 (381)
T ss_dssp HTSCCTTEEEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGG
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 75356521043232454252010243468335322289998642110366112110135677787525654424023144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~LviGPw~H~~~ 320 (381)
T d1mpxa2 241 QLPWWHKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWGAIHSYAAMEPRDKRNTLNYLVMGPWRHSQV 320 (381)
T ss_dssp GSHHHHHHHHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSHHHHHHHHHGGGCTTSSSEEEEEESCCTTGG
T ss_pred CCHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 46177887527875301232690266652345674389842555775653899999999842666783699936767787
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~~G~~~Wr~~~~W 381 (381)
T d1mpxa2 321 NYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYNTGENHWDRLKAW 381 (381)
T ss_dssp GSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 6677767766665101134689999999999727999999999889997899968407979
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=0 Score=28714.04 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2guya2 1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYH 80 (381)
T ss_dssp CCHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTT
T ss_pred CCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99702147829999755211799988877787667647848999999699998779998996988778766688899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2guya2 81 GYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQ 160 (381)
T ss_dssp SCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 75046646655677877899999989886063213100124666545765222334689875431001344445444554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2guya2 161 VEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTC 240 (381)
T ss_dssp HHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCEEEEEEECCCCCHHHHC
T ss_conf 32023257765510103355889999998765103113555103403754589999764321402563110364075540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~enHD~~R~~s~~~~~~~~~~a~~~l~t 320 (381)
T d2guya2 241 PYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIIL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 23324444224066799999996267761778999998874067643000101676752210225889999999999998
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~~~~~~~~ 381 (381)
T d2guya2 321 NDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVT 381 (381)
T ss_dssp SSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 0897298736002757998811001466556767879999999999997488641699879
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=0 Score=28712.39 Aligned_cols=1 Identities=100% Similarity=1.334 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2aaaa2 1 LSAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (381)
T ss_dssp CCHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred CCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98034488727999838106899998877777767758938999999799999769998994987668765788998875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2aaaa2 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM 160 (381)
T ss_dssp SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56646543311024988999999998866311110023445433456776555333587554345588766456445555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2aaaa2 161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDC 240 (381)
T ss_dssp HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 67775678666675313233255667766644204221322000001233307899998744532233530379813321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt 320 (381)
T d2aaaa2 241 PYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 11344333002157899999985487307899999974331157721103435667721041246989999999999997
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------9
Q 001846 864 ------------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~al~~~~~~ 381 (381)
T d2aaaa2 321 SDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYIT 381 (381)
T ss_dssp SSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCC
T ss_conf 0797675747214878998834111367677746769999999999997049453279879
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28649.97 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisal 80 (380)
T d1ibja_ 1 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV 80 (380)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 97767624279999999896188557766461887766895140898868999999999971986188603199999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~ 160 (380)
T d1ibja_ 81 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH 160 (380)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 98627998799974033554012222110454212235751678877775067618996142443223445899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg 240 (380)
T d1ibja_ 161 AQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG 240 (380)
T ss_dssp TTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 75980896243004300255455898999606520256667554433344126777787630466773787779999842
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~ 320 (380)
T d1ibja_ 241 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAV 320 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 31445538889888899999997389866996056456864211222456542111111127999999998389175741
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
|
T Consensus 321 SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~ 380 (380)
T d1ibja_ 321 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 380 (380)
T ss_dssp CCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 568766130485223012089999997697939599983409999999999999976689
|
| >d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=28645.39 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~lvGGK~AnLgel~~~G~pVP~GFvITt~Ay~~Fi~~n~~l~~~L~~~I~~~l~~~~~~~~ 80 (380)
T d1vbga3 1 KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMG 80 (380)
T ss_dssp CCSEEEEETTEESSCTTCTTTTHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98899879986568814475072889989999978599999888549999999980764658799999999987787633
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~a~~s~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (380)
T d1vbga3 81 ATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEH 160 (380)
T ss_dssp CBTTCSSSBCCEEEECCCSSCCTTCCCCEEEETCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
T ss_conf 22356421011001232034566767787751352488998863231101766555553101100034024567788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~m~~~~~~gv~ft~~p~~~~~~~~~I~a~~Glg~~v 240 (380)
T d1vbga3 161 MKESKGLKNDTDLTASDLKELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNV 240 (380)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTCCCCCCCCEEE
T ss_pred HHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCCEEE
T ss_conf 88762304543136987566788998876650487422226888887654212102477100156502641330124245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~La~l~~~iE~~yg~P 320 (380)
T d1vbga3 241 QCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNLMPQAYDELVENCNILESHYKEM 320 (380)
T ss_dssp EECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESSCHHHHHHTSCCCEETHHHHHHCHHHHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56663388737667613443444675213322112555545300044366531022238899999999999999981985
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
=
T Consensus 321 qDIEWA~~dg~L~ILQaRPv~~~~~aa~~~~~d~~~~~~i~~~~~~~~~~p~~~~~~l~~ 380 (380)
T d1vbga3 321 QDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHP 380 (380)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHGGGSCHHHHHHTTSC
T ss_pred CEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHCCC
T ss_conf 105999989989999744787557879999999988599688999873898577461399
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=100.00 E-value=0 Score=28642.93 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~ 80 (380)
T d1q45a_ 1 SNETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVE 80 (380)
T ss_dssp CCCCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 98635898118999856875884438883889979999999999998497799974508877757899986217779988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 160 (380)
T d1q45a_ 81 AWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVED 160 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 99999999873576258875307866665545567787666557666677224267755568998843787889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99999999982865366000211367654165335576655764231036677779988887015672278752022366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~~~~~ 320 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKEL 320 (380)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHH
T ss_conf 42133123333210256676653135632477416754433334566567625667889988652488589679989999
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
-
T Consensus 321 ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (380)
T d1q45a_ 321 GMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFLAP 380 (380)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSCCCSSTTTTCSCCCCC
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998699632455299887924999996299988887466458999898577789897
|
| >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein MW1667 (SA1546) domain: Hypothetical protein MW1667 (SA1546) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=28641.44 Aligned_cols=1 Identities=0% Similarity=0.270 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~i~fd~dGVll~~~~~~D~s~ltv~~ll~s~e~Lg~~~~i~~~k~~~~t~~~i~~~~~~~~~il~~~k~~g~n~~~dl 80 (380)
T d1qyia_ 1 MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDM 80 (380)
T ss_dssp CCEEEECSBTTTBCSHHHHHHHHHHHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHHTTTHHHHHHHHTTCCCHHHH
T ss_pred CCEEEEECCCEEECCEEECCHHHHHHHHHHHCHHHCCCCEEEECCCCCCHHHHHHEEEEECCHHHHHHHHHCCCCHHHHH
T ss_conf 96699937807982433203676658887612011256404533765510043311133053246676662688806999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~k~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (380)
T d1qyia_ 81 LFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELH 160 (380)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHCSSCHHHHHTTSGGGCSSCCCCCTTTTHHHHTTCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHCC
T ss_conf 99999999998774348985778987775436408999875365556775148888765324553144755521376528
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~~r~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~ 240 (380)
T d1qyia_ 161 VSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGR 240 (380)
T ss_dssp CSCCGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHCSCCSCSSCCCTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 75888999986899999999999877220223345533156675423013565334363999999999879959998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~ 320 (380)
T d1qyia_ 241 PYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI 320 (380)
T ss_dssp CHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 79999999998199534785058744133311220331102369986999999998088778899999973899886999
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
-
T Consensus 321 vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il~~l~~~~ 380 (380)
T d1qyia_ 321 VGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH 380 (380)
T ss_dssp EESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHHSCTTTTC
T ss_pred ECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf 889989999999879988999458888643778976799999889999999999998509
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=100.00 E-value=0 Score=28639.52 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~nlgn~lda~~~~~~~~~~~~e~~Wgnp~~t~~~i~~ik~~Gfn~vRi 80 (380)
T d1edga_ 1 MYDASLIPNLQIPQKNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIKTTKQMIDAIKQKGFNTVRI 80 (380)
T ss_dssp CCCGGGSCCCCCCCCCCCCSHHHHHHHHHCSEEECTTSTTCCCCSSCCSGGGHHHHTTCSCCCHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 95434576564465566888789999864784623867036887656678987776699616699999999869987997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Pv~w~~~~~~~~~~i~~~~l~~v~~vV~~a~~~Gl~VIldlHh~~~~~~~~~~~~~~~~~~~~~~~~~W~qiA~~fkd~~ 160 (380)
T d1edga_ 81 PVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMASSKKYITSVWAQIAARFANYD 160 (380)
T ss_dssp CCCCGGGEETTTTEECHHHHHHHHHHHHHHHTTTCEEEEECCSCBCTTTSBCSSGGGHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34078826899885298999999999999997699799845667887766678656757799999999999887606898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~l~fel~NEP~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~IR~~~~~n~~r~i~v~g~~~~~~~~~~~~~~~p~ 240 (380)
T d1edga_ 161 EHLIFEGMNEPRLVGHANEWWPELTNSDVVDSINCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPN 240 (380)
T ss_dssp TTEEEECCSSCCCTTSTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGGTSCEEEECGGGCHHHHHSTTCCCCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCC
T ss_conf 66999621344446786544532223108999999999999999999984457886089857886477543000111554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 d~~~~~~~li~s~H~Y~p~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~giPviiGEfG~~~~~~~~~r~ 320 (380)
T d1edga_ 241 DISGNNNKIIVSVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECGAVDKNNLKTRV 320 (380)
T ss_dssp CCTTCCSCEEEEEECCCSHHHHTSCGGGTCCCCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCEEEEEECCCCSSCHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf 45677887799975157643566667767877655576113899999999999988754962999623376789858999
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~a~~~gi~~~~Wdn~~~~~~~~~fg~~dr~~~~w~~p~~~~~~~~~~~g~~~ 380 (380)
T d1edga_ 321 EYMSYYVAQAKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAFGLIN 380 (380)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCCSSSSCCCCCEETTTTEESSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999998699279987998888866745153788865889999999998648999
|
| >d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=28637.21 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~k~~eg~i~~W~~~~~~~~~~~~~~~~~F~~~~p~I~v~~~~~~~~~~~l~~~~~~g~~pDi~~~~~~~~~~~~~~g~l~ 80 (380)
T d1elja_ 1 MKIEEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLE 80 (380)
T ss_dssp CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 98766389999589803899999999999987839799998689999999999976999819999937799999879963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~ynkd~~~~~P~T~~e~~~~~~~l~~~~~~~~~~~~~~~~ 160 (380)
T d1elja_ 81 PIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGIAWPINA 160 (380)
T ss_dssp CCTTTCCHHHHTTBCHHHHHHTEETTEECEEEEEEEECEEEEETTTCSSCCSSHHHHHHHHHHHCBGGGTBCSCBCCCSH
T ss_pred CCCHHHHHCCCCCCCHHHHHHEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 08665400221112166664103454301122222103566666676421332899999999986044771454311454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (380)
T d1elja_ 161 YFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGI 240 (380)
T ss_dssp HHHHHHHTTTSCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTC
T ss_pred CCCCHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 32201120478500033454467798899999999987443233545750465666405761155244288999875430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~~g~~P~~~~~~~~~~~~~~~ 320 (380)
T d1elja_ 241 NFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDP 320 (380)
T ss_dssp CEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCCBGGGGGCHHHHTCH
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCH
T ss_conf 26644458878776666652211000011244674599999999986326999999998348888777788598755193
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~g~~~~d~~~al~~~~~~i~~~~k 380 (380)
T d1elja_ 321 VIYGFGQAVQHAYLMPKSPKMSAVWGGVDGAINEILQDPQNADIEGILKKYQQEILNNMQ 380 (380)
T ss_dssp HHHHHHHHHHTCEECCCCTTHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 899999999518207889878999999999999997789992099999999999999529
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=28642.11 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~G 80 (380)
T d2gmha1 1 CKVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG 80 (380)
T ss_dssp CCSCCCCCCTTTSCTTSCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 98885335642245335754444574201363888998977899999999985213413999799981788899874535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~ 160 (380)
T d2gmha1 81 ACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYP 160 (380)
T ss_dssp CEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEET
T ss_pred CCCCHHHHHHHCCCHHHHCCCCCCCEECCEEEEEECCCCCCCCCCCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 16668899987630344355301320012279963366466545670110245551320467888999987631543443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~sip 240 (380)
T d2gmha1 161 GYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSIP 240 (380)
T ss_dssp TCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGGCC
T ss_pred ECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 01001344225773110122332323334556555643003463799956178866288876542103665545666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~s~~~~eL~~~rn~~ 320 (380)
T d2gmha1 241 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIR 320 (380)
T ss_dssp CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTTT
T ss_pred CCCCCCEEEEECCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34069806873354313512148753220237889999999997188643103444556889987628999999863877
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------9
Q 001846 864 -----------------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~g~~~g~~~~~~~~~~~~g~~p~tl~~~~~d~~~l~~~~~~~~i~y~~~d~~~~ 380 (380)
T d2gmha1 321 PSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQIS 380 (380)
T ss_dssp GGGGSTTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 898752108999999999999857898701789997889988798589998999989169
|
| >d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28564.43 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~F~~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~ 80 (379)
T d1lj5a_ 1 VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYK 80 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSTTBCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98976888888849999999998723969869987899999999999867728999999970999873778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~~~~~~~l~~an~l~v~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~ 160 (379)
T d1lj5a_ 81 ELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQL 160 (379)
T ss_dssp HHHCGGGSSEEEEEEEEEEETTSCCCTTHHHHHHHHHSCCCEEECTTSHHHHHHHHHHHHHHTTTTSCCCSSCTTSSCTT
T ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 86175554520024478773567245788998787636600135555268999999999996049932331376678965
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 t~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~~M~~~~~~~~~~~~~~~~~~~~vv~Lp~~~~~~sm~iilP 240 (379)
T d1lj5a_ 161 TRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP 240 (379)
T ss_dssp CCEEEEEEEEEEEEBSSCCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEBTTSSEEEEEEEE
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 40466721799511347677355533210346785576112354151205885036666058999603798478999647
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~v~l~lPkf~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~v 320 (379)
T d1lj5a_ 241 YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQA 320 (379)
T ss_dssp SSTTSCTHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTCSSSCCCEEEE
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 76666367776530077788777634313308999999984100277878867972235765565223678898077656
Q ss_pred ----------------------------------------------------------E
Q ss_conf ----------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~hk~~iev~E~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 379 (379)
T d1lj5a_ 321 LQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379 (379)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEESSCCCCCCCCBCCEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEEEECCCCEEECCCCEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEEECCC
T ss_conf 88999998787145022322542268999879940998999999999968999995398
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=100.00 E-value=0 Score=28564.16 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV 80 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99732589989688999999999658893999936899987522346222023346664445434566333566554555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T d2f5va1 81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA 160 (379)
T ss_dssp CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 66777777667876761688821214442454122303799846216683458988863012457776688686025564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 240 (379)
T d2f5va1 161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVA 240 (379)
T ss_dssp HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSSCCEECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCEEECCCE
T ss_conf 44454899999877775277877553445656765444210047888788589886343310433776489999956999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~~g~h~mG~~~~ 320 (379)
T d2f5va1 241 CERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEK 320 (379)
T ss_dssp EEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTTTTBTCBCSCTT
T ss_pred EEEEEEECCCCEEEEEEEEECCCCEEEEEECEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 99999818999899999997999979999650899655766898997322002223345566753166545044566888
Q ss_pred ----------------------------------------------------------E
Q ss_conf ----------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~~~~~ 379 (379)
T d2f5va1 321 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFT 379 (379)
T ss_dssp TTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88724788975213289797388556775656818889999999999999862458999
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=100.00 E-value=0 Score=28561.81 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~ 80 (379)
T d3sila_ 1 EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK 80 (379)
T ss_dssp CEEEEECTTCCCCBCTTSCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 94089984775715889858996479986255746689997999599999667789887777519999913796589999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~i~~~~~~~~~~~~~~p~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~ 160 (379)
T d3sila_ 81 IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD 160 (379)
T ss_dssp EEECCCCSCTTTCEEEEEEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHH
T ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 88647998765243477647887899978999999735788875430135678774247887658610001467425321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~g~g~gi~~~~g~l~~p~~~~~~~~~~~~~~~~~~~sddgg~w~~~~~~~~~~~~E~~vve~dG~ll~ 240 (379)
T d3sila_ 161 IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN 240 (379)
T ss_dssp HHHHHCSEEEEEECSEECEECTTSCEEEEEEEEECTTSSCSEEEEEEEESSSSSEECCSCCEECTTCCEEEEEETTEEEE
T ss_pred CCCCCCCEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCEEE
T ss_conf 12236530455057662476046534645898815899862799999857887533540356778877889864885799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~R~~g~~~v~~S~DgG~TWse~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~r~~~~~~~s~d~g~tW~~~ 320 (379)
T d3sila_ 241 NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE 320 (379)
T ss_dssp EECCSSBCBCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCC
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 98717966999986898623145665323221224321226883469919999889888888635899974688867788
Q ss_pred ----------------------------------------------------------E
Q ss_conf ----------------------------------------------------------9
Q 001846 864 ----------------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~aYS~l~~~~~~~~~~l~~lyE~~~~i~~~~lt~~l~~~~~~~ 379 (379)
T d3sila_ 321 VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN 379 (379)
T ss_dssp EEEEEEEECSCCCTTSCCCEEEEEEEETTEEEEEEEEEETTEEEEEECGGGHHHHHTCC
T ss_pred CEEEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCC
T ss_conf 67995147501589970312248747989999999998999878369776477733479
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=0 Score=28491.32 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~ 80 (378)
T d1jr1a1 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT 80 (378)
T ss_dssp CBCHHHHTSSCCCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC
T ss_pred CCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 98978862568888844679847988776777562069887856899879799987388999999997899469769999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~ 160 (378)
T d1jr1a1 81 PEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPN 160 (378)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHEEHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999887641104327643335546789999956687789999999751555576403676202357999999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakA 240 (378)
T d1jr1a1 161 LQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKA 240 (378)
T ss_dssp CEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEE
T ss_conf 72530220129999999982999786033135444454222347665202567887511569853425333547732468
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 la~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~ 320 (378)
T d1jr1a1 241 LALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKF 320 (378)
T ss_dssp HHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHH
T ss_pred EEEECCEEEECCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH
T ss_conf 88605435532321342004675231468332312431045554401320332103345644787317850368778999
Q ss_pred ---------------------------------------------------------E
Q ss_conf ---------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 378 (378)
T d1jr1a1 321 VPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 378 (378)
T ss_dssp HHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHHHHHHHSCCSCSCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999888652657573999975333577269998845301257875541012339
|
| >d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Maspin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28486.41 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~l~~a~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~ 80 (378)
T d1xqga_ 1 QGSMDALQLANSAFAVDLFKQLSEKEPLGNVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDV 80 (378)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTSCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHTTGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 97678999999999999999987229798499888999999999998677589999999708998689999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~l~~~~~l~~~~~~~~~~~f~~~~~~~y~~~v~~~dF~~~~~~~~~~IN~wv~~~T~g~i~~~~~~~~~~~~t 160 (378)
T d1xqga_ 81 NKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQT 160 (378)
T ss_dssp HHHTTTSSEEEEEEEEEETTSCCCHHHHHHTTTTTTTCEEEECHHHHHHHHHHHHHHHHHHHTTTSCSCCSCTTSCCTTC
T ss_pred HCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 45467725887312022034532488998766323654686432440567789999999984158715456898989875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~l~na~~f~~~W~~~F~~~~T~~~~F~~~~~~~~~v~mm~~~~~~~~~~~~~l~~~vv~Lp~~~~~~sm~iilP~~~~ 240 (378)
T d1xqga_ 161 KILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVE 240 (378)
T ss_dssp CEEEEEEEEEECCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEGGGTEEEEEEEBGGGSSEEEEEEESSCC
T ss_pred EEEEEEEEEEEEEECCCCCCCCCEECCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 17888875886002278755652215501289955764123101426422206777389995058995789999567665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~L~~l~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~ 320 (378)
T d1xqga_ 241 DESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSETKGVALSN 320 (378)
T ss_dssp SSSSSCHHHHHSCSHHHHHHHTCGGGCEEEEEEEEEECEEEEEEECTHHHHHHHTCCGGGCTTTCCCTTTCSCSSCCEEE
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEECHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 54433899998639889998743542534799998004899876255887775584000588877544577999923787
Q ss_pred ---------------------------------------------------------E
Q ss_conf ---------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------V 864 (1006)
=
T Consensus 321 i~qk~~i~vdE~G~~a~~~t~~~~~~~~~~f~~drPFlf~I~d~~t~~~Lf~G~v~~P 378 (378)
T d1xqga_ 321 VIHKVSLEITEDGGDSIEVPGARILQHKDELNADHPFIYIIRHNKTRNIIFFGKFSSP 378 (378)
T ss_dssp EEEEEEEEECSCBCCCCCCTTTTTSSCCCCCBCCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 6889999990685521223244457999879814998999999999978999993499
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=0 Score=28483.15 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~i~~~f~W~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~L 80 (378)
T d1jaea2 1 EKDANFASGRNSIVHLFEWKWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDM 80 (378)
T ss_dssp CCCCCCCTTCEEEEEETTCCHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHH
T ss_conf 99998879970699702574999999999999980998899092620678899877565678632268889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 V~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~n 160 (378)
T d1jaea2 81 TRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGS 160 (378)
T ss_dssp HHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTS
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998567244564034421244677766555688744476788876556899886777875433100014567103389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 p~V~~~l~~~~~~w~e~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (378)
T d1jaea2 161 DYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFG 240 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHCCCCC
T ss_conf 99999999999999985778446531112578787777776543132112444555404532001553200110103665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~af~lt~p~G~P 320 (378)
T d1jaea2 241 CVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTT 320 (378)
T ss_dssp EEECHHHHHHHHHHHTTTSCGGGGGGCSGGGTCCCGGGEEECSCCTTHHHHSCTTCCCTTSHHHHHHHHHHHHHSCSSEE
T ss_pred HHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 00021332014554305762999999855440378540457624678777588763456898999999999998579887
Q ss_pred ---------------------------------------------------------E
Q ss_conf ---------------------------------------------------------9
Q 001846 864 ---------------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~~~ 378 (378)
T d1jaea2 321 RIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGFRNAVE 378 (378)
T ss_dssp EEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8982365577777898888987778875866787878889989999999999866479
|
| >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Antarctic bacterium DS2-3R [TaxId: 56673]
Probab=100.00 E-value=0 Score=28413.87 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~GL~Gv~v~~s~IS~Idg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~ 80 (377)
T d1a59a_ 1 EPTIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVK 80 (377)
T ss_dssp CCCCCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCSCCHHHH
T ss_pred CCCCCCCCCCCEECEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99889888998466075727858998799958439998714999999999978989499999999999998337986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~l~~~p~~~~pm~~l~~~~s~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~r~~~g~~~~~p~~~~~~~~~~~~ 160 (377)
T d1a59a_ 81 GAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW 160 (377)
T ss_dssp HHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997302002113445555320344532344657777777777888899888877763268887789876256999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~l~~~Lvl~aDHg~n~StfaaR~vaSt~~d~~~~~~a~~~al~Gp~hGga~~~~~~~l~~i~~~~~~ 240 (377)
T d1a59a_ 161 MTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDE 240 (377)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSCCCSSC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 62123320888877677876542477676236666664258514467787877603420111278999999998621566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~k~l~pNvD~ 320 (377)
T d1a59a_ 241 SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAKQIKPNLDY 320 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHCCCBCTHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 50266777899999998667866466874445667406777767777665412206677899999999971799978176
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~l~~~lG~p~~~~~~lf~i~R~~G~~AH~~Eq~~~~~l~RP~~~Y~G~~~R~~p 377 (377)
T d1a59a_ 321 PAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVADNALIRPLSEYNGPEQRQVP 377 (377)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCCCCCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
T ss_conf 999999996849667769999999999999999998579975746540389999897
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28412.54 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~k~Ki~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (377)
T d1o6ca_ 1 KKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRL 80 (377)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGGGTHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 98469999970585999999999997189998799993798899999985168777535443889988999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (377)
T d1o6ca_ 81 DELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLK 160 (377)
T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 56665336653676403454301566653114227999514565433234714554003565304886323466634433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~G~~~~~I~~vG~~~~D~i~~~~~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 240 (377)
T d1o6ca_ 161 ENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL 240 (377)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHCCSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC---
T ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 03445427523420678888777777753334430578449998323101466337899998752123355653234552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vIgnSss~i~Ea~~lg~P~Inir~~tERqe~~~~g~nilv~~ 320 (377)
T d1o6ca_ 241 NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLKLAGT 320 (377)
T ss_dssp -CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEEEC--CHHHHGGGGTCCEEEECSCCC---CTTTTSSEEECS
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHCEEEEECCCCCCCCHHHCCEEEECCC
T ss_conf 11321122101345651475132136889999864225641640467766665414898078875822000680598789
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~k~~~~~~~ 377 (377)
T d1o6ca_ 321 DEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYRKEQPDSFT 377 (377)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHCCCTTCCSCHHHHHHHHHHHHTTSCSCCCCCCC
T ss_pred CHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999999749687763065889898982999999999985083336878999
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=0 Score=28412.07 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~ 80 (377)
T d1vjoa_ 1 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTA 80 (377)
T ss_dssp CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 96473003446799987266610899789999999757688897888999999999999999859999809998484899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~ 160 (377)
T d1vjoa_ 81 AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ 160 (377)
T ss_dssp HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCEEEE
T ss_conf 99999984334344420242001344444454320311100135778743202456666057640345554202334630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1vjoa_ 161 PLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 240 (377)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEECC
T ss_conf 50554334552264389960002333321012456505640212440589779974132667765203589974011001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~ 320 (377)
T d1vjoa_ 241 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD 320 (377)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred CHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCEEEEEECCC
T ss_conf 10110257653346530142022257777666533725787888887654566664168546068276097499998999
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 321 GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 989999999998649999966862326998998267578999999999999999859
|
| >d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: SSO1389-like superfamily: SSO1389-like family: Cas DxTHG domain: Hypothetical protein SSO1389 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=28411.47 Aligned_cols=1 Identities=0% Similarity=1.965 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~l~ia~wG~p~~w~~~~Y~~~~~~~~~~~s~~~l~~~~~~d~~vi~~~dSl~~~~~~~~~d~~~~~~~~~~~~~~~l~ 80 (377)
T d2i71a1 1 MASIVFSTIGNPKGYQKVTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLG 80 (377)
T ss_dssp CEEEEEEEESCTTCCCCEEEEETTEEEEESSHHHHHHHHTTCSEEEEEEEGGGGGGGTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 95499993478665728999978931204455999998747883999997301123468822799999999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~viv~P~vg~~f~g~~~~~~~~~~~~l~~~l~~~~~~eI~lD~thGiNy~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 160 (377)
T d2i71a1 81 ISESYVVAPNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAVSAYAAKSEKEVKVSL 160 (377)
T ss_dssp CCSCEEEECCCBTTEESCTHHHHHHHHHHHHHHHHHHTEEEEEEEEEECCTTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88449992797628856888999999999999850389868999777870059999999999999999974578744999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~nsdP~~~~~~~~~~I~~i~~~~i~p~~~~~~i~~~fl~~~k~~~~~~~ke~~~~i~~~~~al~~gl~lyL~~~~~~~~l 240 (377)
T d2i71a1 161 YNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFFNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLHL 240 (377)
T ss_dssp EECCCTTCCTTSEEECEEEEEEEECHHHHHHHHHHHHHTSCTTTTTTSSTTHHHHHHHHHHHHHTTCHHHHHHSCCHHHH
T ss_pred EECCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHH
T ss_conf 94776568887746999840126221466554303566667777678888888899999986540429999874022327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~~~~l~~l~e~~~~~v~~~~i~~Ei~~i~~~~~~ 320 (377)
T d2i71a1 241 KRLEDDLSKDPLLTPSENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMG 320 (377)
T ss_dssp HHHHHHHHSCCEEEECSSCEEEECCCHHHHHHHHHHHHHGGGCSCEEHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88998630002330465312302330788999999998740230210899999998861356999999999988861477
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~~~k~~~~~~~~~d~RNF~AHaGLe~nvt~vk~~~~~i~v~y~e~~~~i~~~l 377 (377)
T d2i71a1 321 SERKLLGEYMKVEGKGFDKRILYAHGGLPYAGTYVYKEKDKVYVTYGDKIDEIERQI 377 (377)
T ss_dssp SSCEEGGGTC---------CHHHHTTTCCTTTCEEEEETTEEEEECGGGHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHCC
T ss_conf 760478886310147885300100348652729999669889998787599998419
|
| >d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyl Hydrolase Family 88 domain: Unsaturated glucuronyl hydrolase species: Bacillus sp. GL1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=28411.07 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~g~~~~~~~~~Wt~Gf~~G~lwl~ye~Tgd~~~~~~a~~~~~~~~~~~~~ 80 (377)
T d2d5ja1 1 MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR 80 (377)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCEEEEESSSSSEEEESSCSSCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 94899999999999988855101797748998377408983376479999999999869999999999999999975224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~hd~Gf~~~~s~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~lm~~~~l~~~ 160 (377)
T d2d5ja1 81 FENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA 160 (377)
T ss_dssp TTTCSSSTHHHHHHTTHHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGGGGHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45566347631257679999987299989999999999999831867785435787888777766055125429999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~tgd~~y~~~A~~h~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~ 240 (377)
T d2d5ja1 161 GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA 240 (377)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCH
T ss_conf 88509876999999999999998268899748898865899862578888788773167632199999999999983881
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~a~~~a~~~l~~~~~dgi~~wd~~~p~~~~~~~DsSa~Ai~A~gll~L~~~~~~~~~~~~~Y~~~a~~i~~~l~~~ 320 (377)
T d2d5ja1 241 DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG 320 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999738877885321566678999877326789999999999852577267999999999999999876
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~iygDYy~~Eal~r~~~~~~~~w~~~~~ 377 (377)
T d2d5ja1 321 YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR 377 (377)
T ss_dssp TBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHHHHHHHCCCTTSSCTTC
T ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 600689988844631635789999988673559999999999997388653745899
|
| >d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: V-region of surface antigen I/II (SA I/II, PAC) family: V-region of surface antigen I/II (SA I/II, PAC) domain: V-region of surface antigen I/II (SA I/II, PAC) species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=28410.60 Aligned_cols=1 Identities=100% Similarity=0.603 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~kdla~Y~~~l~~Y~~e~~~y~~alae~ek~KnedGyl~~p~aQ~LvF~~Ep~A~~ti~~~gk~~~a~~~~~~~~~~~~~ 80 (377)
T d1jmma_ 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSK 80 (377)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCBCEECSCCTTCEEEEEESSEEECHHHHHHHHHSGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCH
T ss_conf 94077889999999999999999999998740556663640145414316787268885255311301112233044303
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~l~kg~~vtvTYtNL~nSsynGKKI 160 (377)
T d1jmma_ 81 AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKI 160 (377)
T ss_dssp HHHHTTEECGGGCCGGGGCSGGGEESSCCEEETTSTTSSCEETTTBTSCCEEEEEEECTTCEEEEEEECCSSCEETTEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEE
T ss_conf 33101010223443224333322000002355555445501024567753025699617998999962754442178323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 sKvvytYtl~~s~s~~g~~i~~~l~~DPT~t~f~~~~~g~~~~~~~~~v~~~vkFYDe~G~~i~~~~Al~S~sSLN~~~~ 240 (377)
T d1jmma_ 161 SKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHN 240 (377)
T ss_dssp EEEEEEEEECTTCCCSSSCEEEEEESSGGGCEEEECCCSSCBSSCEEEEEEEEEEEETTSCBCCEEEEEEEECCCCBCSS
T ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEECCCCCEEEEECCCCCCC
T ss_conf 69999999555788888624689815995279998512666656643899999999789989226602687410258998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~iE~V~~~ng~fv~I~GSSV~~~~g~~ya~~~~~~~~~~~Gsr~~~~~~~~~~s~WD~~~s~~ayYGA~v~~~~g~~~~~ 320 (377)
T d1jmma_ 241 SIEMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNHV 320 (377)
T ss_dssp EEEEEESCSSEEECBTTCSEEEETTEEEECSSCCSSTTSTTCSSCSSCCSSTTCCCCSSSCTTGGGGCEEEEEEESCEEE
T ss_pred CEEEEECCCCEEEEECCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEE
T ss_conf 46899748971899579766865994772677432346676421223467766787778997631123778970895489
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
|
T Consensus 321 t~g~~~a~~~~~~~~~~~~~~~d~~~~~~~~iWfa~ns~i~a~~vp~~~~e~Pt~P~ 377 (377)
T d1jmma_ 321 TVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 377 (377)
T ss_dssp EEEEEEGGGTSCGGGSCCCTTCCTTCCBCSEEEECCBSCCCSSSCCBCCCCCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 970455432246644455666655567776231674378765458999987899989
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=100.00 E-value=0 Score=28408.07 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~ 80 (377)
T d1k8qa_ 1 AFGKLHPTNPEVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPN 80 (377)
T ss_dssp CCCBSSCCCGGGGCCHHHHHHHTTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf 97667789987677889999984998558999817999898998468888876689989089989996314677442752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g~~~v~lvGhS~GG~ia~ 160 (377)
T d1k8qa_ 81 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGF 160 (377)
T ss_dssp TCHHHHHHHTTCEEEECCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEETHHHHHHH
T ss_pred CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 06999999879989998089988888887778752220137799984341799999999972999879997332699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1k8qa_ 161 IAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL 240 (377)
T ss_dssp HHHHHCHHHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99986323320004675214544444114678998750136666642000114046777765431022034667877655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~ 320 (377)
T d1k8qa_ 241 FIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWN 320 (377)
T ss_dssp HHHHCCCGGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEE
T ss_pred HHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEE
T ss_conf 42037771114677766666315553359999999999753741220330345556651345751222754899989999
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
=
T Consensus 321 G~~D~~~~~~~~~~l~~~lp~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~~ 377 (377)
T d1k8qa_ 321 GGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp ETTCSSSCHHHHHHHHTTCTTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 589972289999999997799759999699988303424454999999999997229
|
| >d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Esterase EstB species: Burkholderia gladioli [TaxId: 28095]
Probab=100.00 E-value=0 Score=28407.62 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~a~l~~~id~~~~~~~~~~~~pG~~~~V~~~g~~v~~~~~G~ad~~~~~~~~~~t~f~iaSvtK~~ta~~v~~Lve~G~l 80 (377)
T d1ci9a_ 1 AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGEL 80 (377)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 94189999999999998289875999999999999998478624455988999986860326899999999999975996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ldd~v~~ylP~~~~~~~~~~~~~ITi~~Ll~htsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T d1ci9a_ 81 ALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFA 160 (377)
T ss_dssp CTTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSC
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 53322112331110134324577515013035532466633444113565540245665455899999999862888679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 PG~~~~Ys~~~~lLg~iie~vtg~~~~~~~~e~i~~PLGm~~t~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1ci9a_ 161 PGSGWQYSLALDVLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHG 240 (377)
T ss_dssp TTSCCCCCTHHHHHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCSCGGGBCCCEECCSSSCEECCTTEEEECCTTSC
T ss_pred CCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99627607689999998763133203455467786213875343357826640000024677653134654345545666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~gGl~sta~Dlarf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~G~~~~~~~~~ 320 (377)
T d1ci9a_ 241 AAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDP 320 (377)
T ss_dssp SEEEECGGGGGCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCHHHHHHHHSCSSCGGGCTTSTTEEECSSSEEESCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf 54345763223645555677632235999999999765116787077876650102477766678971241011430376
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~g~~~h~G~~gt~~~idP~~~l~vv~ltN~~~~~~~~~~~~~l~~~vYa 377 (377)
T d1ci9a_ 321 AAAGTPQHAGTLQWGGVYGHSWFVDRALGLSVLLLTNTAYEGMSGPLTIALRDAVYA 377 (377)
T ss_dssp HHHTCSSCTTCEEEEETTTEEEEEEGGGTEEEEEEESEETHHHHSHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 535788999856626821418999944998999988489999875999999982189
|
| >d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Carnitine acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28410.53 Aligned_cols=1 Identities=0% Similarity=-1.589 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~Q~sLP~LPvP~L~~Tl~ryL~s~kPl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~ 80 (377)
T d1nm8a1 1 HHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQ 80 (377)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 96567998999999999999999865149999999999999998736860799999999975147773468899886435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~R~pl~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~plcM~qy~~lF~t~RiP~~~~D~ 160 (377)
T d1nm8a1 81 YRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDT 160 (377)
T ss_dssp CCSCSBTTTBCEEECCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEETTEECCCGGGGGTTTEEEECCSSSCE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEECHHHHHHHCCCEECCCCCCCC
T ss_conf 88785466766300267777760679999999999999999998728778656589944189998761765068999883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~~~~~~~~~~HIvV~~~g~~ykv~v~d~~g~~ls~~ei~~~l~~I~~~~~~~~~~~vg~LTt~~Rd~Wa~~r~~L~~~ 240 (377)
T d1nm8a1 161 VSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKD 240 (377)
T ss_dssp EEECTTSSSCCCEEEEEETTEEEEEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 20057778888769999899899999988999899899999999999961104688886405678728999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~N~~~L~~Iesalfvv~LDd~~p~~~~e~~~~~~~~~~lhG~g~~~~~~NRW~DKs~q~IV~~nG~~g~~~EHS~~DG~ 320 (377)
T d1nm8a1 241 KVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGP 320 (377)
T ss_dssp HHHHHHHHHHHHSSCEEEEECCCSCCCSTTHHHHHHHHHHHCSCTTTTTTSCCTTBSEEEEEETTSCEEEEECTTSCCHH
T ss_pred CHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHH
T ss_conf 60799999997547888833788888613666666555033687557987726665517999789877862267761289
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------9
Q 001846 864 --------------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~a~~~~~~li~D 377 (377)
T d1nm8a1 321 PIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQD 377 (377)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999987234666788778899975878976989999999999999998259
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28337.70 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 MKi~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (376)
T d1f6da_ 1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKP 80 (376)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGGGGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96999998267399999999999738998779999088989999999862878774400488999899999999986478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~kPD~v~v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~~~~~L~~~G 160 (376)
T d1f6da_ 81 ILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN 160 (376)
T ss_dssp HHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHHHHHHHHHTT
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
T ss_conf 89745676224310344313689998740753899852446542000474066554203200488743478886877518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (376)
T d1f6da_ 161 VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ 240 (376)
T ss_dssp CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 98653412167248788887765423512321111022334777766998335411112009999999865434214047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ii~p~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~ll~~a~~vignSssgi~Ea~~lg~P~Inir~~ter~~~~~~g 320 (376)
T d1f6da_ 241 IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAG 320 (376)
T ss_dssp EEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESSSGGGGTGGGGTCCEEECSSCCSCHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCEECC
T ss_conf 85254432124446766640444513323556789999984163998368506766787489889727876576412368
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~~npYGdG~as~rI~~iLk~~~i~~ 376 (376)
T d1f6da_ 321 TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (376)
T ss_dssp SEEECCSSHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 06987899999999999997285766530457898989849999999998568999
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28334.97 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT 80 (376)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf 97988786316699999999999998748987654699999999999999999998098978099979878997766621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHH
T ss_conf 44332235763223432220128999999866988999768988727789999864899608999777665412554124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~~~~~~~~~~~~ 240 (376)
T d1eg5a_ 161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQN 240 (376)
T ss_dssp HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44554311467504787531246545520004865000125434357886268852576658720189875445477664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~ 320 (376)
T d1eg5a_ 241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVST 320 (376)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 02456677775402210246666666543200012331011123433211256023225997999999988559908967
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
+
T Consensus 321 G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~l 376 (376)
T d1eg5a_ 321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (376)
T ss_dssp ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 61103886206699997399834479889996589899999999999999999639
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=28333.98 Aligned_cols=1 Identities=0% Similarity=-2.420 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 1 DFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CCBCSCCCCCCHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 98668999999999999999996699768977999999999998819599968889999999998089998989872343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~ 160 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTS 160 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred CCCCCCCHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHCCCE
T ss_conf 42110001103431244114433347899999975478981999867888715333899988741946996464310674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~ 240 (376)
T d1mdoa_ 161 YKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLN 240 (376)
T ss_dssp ETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHH
T ss_pred ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHH
T ss_conf 68820466657664278867787788888997125679998764036876443332233323311000012353440145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~ 320 (376)
T d1mdoa_ 241 AAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL 320 (376)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 66655433333579999866534554311465433221234444544332222220002133399999999987998465
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~~ 376 (376)
T d1mdoa_ 321 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 376 (376)
T ss_dssp CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 78532308998952887898799999859798448999999999999999999729
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=100.00 E-value=0 Score=28333.71 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~i~~F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfV 80 (376)
T d2vata1 1 NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI 80 (376)
T ss_dssp CHHHHTSCCCEEEEEEEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEE
T ss_pred CCHHHCCCCCCEEEECCEEECCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf 93220345475375376782799885895699996256488899889984887677021234887077998637463389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 I~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI~~l~aViG~SmGGmqal~wa~~~Pd~v 160 (376)
T d2vata1 81 ICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYV 160 (376)
T ss_dssp EEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTCCCEEEEEEETHHHHHHHHHGGGCTTTB
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCHHHH
T ss_conf 98346788767888877896212377545568852057889999999987386617886134278899999998361777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~li~Ia~~~~~s~~~~a~~~~~~~ai~~Dp~w~~G~Y~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~ 240 (376)
T d2vata1 161 RKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRN 240 (376)
T ss_dssp CCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 52312356523455778888999987422212457775433116789999999999984599999999723224422200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vesyL~~~g~k~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~L 320 (376)
T d2vata1 241 ISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPAL 320 (376)
T ss_dssp -----------------------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEE
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 01000111013444332222343156799999987765530555012899999998503333338899999850899989
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
=
T Consensus 321 vI~~~sD~lFPp~~~~e~a~~l~~a~~~~I~S~~GHDaFL~e~~~~~~~I~~FL~q 376 (376)
T d2vata1 321 IICARSDGLYSFDEHVEMGRSIPNSRLCVVDTNEGHDFFVMEADKVNDAVRGFLDQ 376 (376)
T ss_dssp EEECTTCSSSCHHHHHHHHHHSTTEEEEECCCSCGGGHHHHTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99868420849999999998627874999899988652266999999999999748
|
| >d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Alaserpin (serpin 1) species: Tobacco hornworm (Manduca sexta) [TaxId: 7130]
Probab=100.00 E-value=0 Score=28333.24 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 g~~~~~~~l~~~~~~F~~~l~~~~~~~~~~~N~v~SP~si~~~La~l~~ga~g~T~~el~~~L~~~~~~~~~~~~~~l~~ 80 (376)
T d1k9oi_ 1 GETDLQKILRESNDQFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNR 80 (376)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHHHHHTTSTTSCEEECSGGGHHHHHHHTTTBCTHHHHHHHHHTTCSCTTHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98558999999999999999999983298981998889999999999986673899999997099985457999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~f~~~~~~~y~~~~~~vdf~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~~ 160 (376)
T d1k9oi_ 81 GVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETT 160 (376)
T ss_dssp SCSCCSSBCCEEEEEEEEESSCCBCSGGGSTTTSSSCCCEEEECTTSHHHHHHHHHHHHHHHTTTSSCCCSCGGGCCTTC
T ss_pred HHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCH
T ss_conf 87536798578854002304887166899998752286554245555699999999999986378221006877899501
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~l~~~vveLP~~~~~~sm~iilP~~~~ 240 (376)
T d1k9oi_ 161 RSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD 240 (376)
T ss_dssp CEEEEEEEEEEBCBSSCCCGGGCEEEEECSSSSCCEEEEEEEEEEEEEEEEETTTTEEEEEEEBGGGSEEEEEEEESSTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 45665515655422278883233513053279926999723421417887507798799996237993699999668776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~l~~~~~~l~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~~l~~~L~~lGl~~~F~~~~ad~s~~~~~~~~l~vs~v~q~ 320 (376)
T d1k9oi_ 241 GITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQK 320 (376)
T ss_dssp THHHHHHHTTSTTTTTTTTTSCEEEEEEEEEECEEEEEEEEHHHHHHTTTCCSTTSTTTSCBTTTBSSCCCCCCSEEEEE
T ss_pred CHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 63578864225346899875151228999843589752212788765438754357652312356588998788736877
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~ievdE~G~~a~a~t~~~~~~~~~~~~~~f~~drPF~f~I~~~~~~lf~G~v~~P 376 (376)
T d1k9oi_ 321 AFIEVNEEGAEAAAANAFGIVPKSLILYPEVHIDRPFYFELKIDGIPMFNGKVIEP 376 (376)
T ss_dssp EEEEECSCBSSCSSSCCSSSEESCCCCCCEEECCSCEEEEEEESSSEEEEEEESCC
T ss_pred EEEEECCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEEEEEEEECCC
T ss_conf 89999987116001432344116788897599648979999979969999994288
|
| >d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: PstS-like phosphate-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28330.87 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~i~gaGat~p~p~~~~~~~~~~~~~~y~~~GSG~G~~~~~~g~~~~~~~~~~~tvdfa~sd~~l~~~E~~~~~~~~~~~~ 80 (376)
T d2v3qa1 1 DINGGGATLPQKLYLTPDVLTAGFAPYIGVGSGKGKIAFLENKYNQFGTDTTKNVHWAGSDSKLTATELATYAADKEPGW 80 (376)
T ss_dssp CBCEEECSTTHHHHTSTTTSCTTBCCCEECCHHHHHHHHHHTCGGGTCSCTTSCCCEEEESSCCCHHHHHHHHHHTHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 93215222799999998763596789956576899999963886444556546771353477789999988774066777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~v~iPv~~~~Iai~~N~~~~~~l~Lt~~~L~~If~G~It~Wnd~~i~~p~~~I~vv~R~d~SGTt~~Ft~~L~~~~~~ 160 (376)
T d2v3qa1 81 GKLIQVPSVATSVAIPFRKAGANAVDLSVKELCGVFSGRIADWSGITGAGRSGPIQVVYRAESSGTTELFTRFLNAKCTT 160 (376)
T ss_dssp CCEEEEEEEEEECBCBBCCCCSSCCEECHHHHHHHHHTSCCBGGGSTTSCCCSBCEEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred CCEEEEEEEEEEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 86289747764479987347625543479999843337623001135457677854784489986078889988652755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~a~gs~gv~~~v~~~~~~~gaIGY~~~~ya~~~~~~l~~~~~~~~~~~~~~~~~ 240 (376)
T d2v3qa1 161 EPGTFAVTTTFANSYSLGLTPLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGV 240 (376)
T ss_dssp SSSCBCCCSCGGGTBTTCSTTSTTCEEESHHHHHHHHHHCTTSCSCEECCBCHHHHSSSGGGGGCTTTBCEECCEEETTE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 32234643102332245677677650003573087887540477765444430100022222103332024453000035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~v~pt~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YPI~~~~y~~~~~~~~~~~~~~~vk~Fl 320 (376)
T d2v3qa1 241 AVEGKSPAAANVSAAISVVPLPAAADRGNPDVWVPVFGATTGGGVVAYPDSGYPILGFTNLIFSQCYANATQTGQVRDFF 320 (376)
T ss_dssp EECCBCCCTHHHHHHHHTCCCCCGGGTTCGGGGSCEEESSCBTTEEECCSSSCSCEEEEEEEEESCBSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 66621245888997651144554344566532223334322001357888851112111100002368700159999999
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~l~~~~~gq~~~~~~GyvPLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (376)
T d2v3qa1 321 TKHYGTSANNDAAIEANAFVPLPSNWKAAVRASFLTASNALSIGNTNVCNGKGRPQ 376 (376)
T ss_dssp HHHTCSSSSSHHHHHHTTCBCCCHHHHHHHHHHHTSTTSTTSTTCHHHHTTCCBCC
T ss_pred HHHHHCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860553257889978974399999999999986225420227864367788999
|
| >d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Xylanase Y species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=28330.15 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~g~~~~~~y~n~~~~~g~~q~~~~~k~~~~~~~~f~~~~~~~~y~~~~~~~~yv~d~~n~dv~SEGqgYGMl~Av~~~dr 80 (376)
T d1wu4a1 1 EGAFYTREYRNLFKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTGNLDVRTEGMSYGMMMAVQMDRK 80 (376)
T ss_dssp CCHHHHCCCCCHHHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTTTTBEEHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99764675552888828899999999999999981689766189971798558766799985556799999999980999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~FD~lw~wt~~~l~~~d~~~~~L~aW~~~~~g~v~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~~~Y~~~A~~il~~i 160 (376)
T d1wu4a1 81 DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTC 160 (376)
T ss_dssp HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999985367777666715336799997889988767999999999999874887533356999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~nPSY~~P~~~~~fa~~a~~~~~~~W~~~~~~s~~ll~~~~~~~tGL~PDw~ 240 (376)
T d1wu4a1 161 VHNGEGGPGHPMWNRDNKLIKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACHPETGLAPEYA 240 (376)
T ss_dssp HHTTSSSSCCCSBCTTTCCBCSSTTCSEECGGGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSCTTTCCCCSSE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 98546788865103674455558887502801037899999998613477457999999999999971147879998425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~dg~~~~~~~~~~~~yDA~Rvpl~ia~d~~w~g~~~~~~~~~~~~~~f~~~~~~~~~~~y~~dG~~~~~~~~~~~g~~a 320 (376)
T d1wu4a1 241 YYDGTPNDEKGYGHFFSDSYRVAANIGLDAEWFGGSEWSAEEINKIQAFFADKEPEDYRRYKIDGEPFEEKSLHPVGLIA 320 (376)
T ss_dssp ETTSSBCCTTSCSSBSGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCGGGCEEECTTSCEEEEECSCHHHHHH
T ss_pred EECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 35895378778997750199999999977512575356799999999998634666688553368414677888679999
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~a~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~Llall~lsG~~r~~~p 376 (376)
T d1wu4a1 321 TNAMGSLASVDGPYAKANVDLFWNTPVRTGNRRYYDNCLYLFAMLALSGNFKIWFP 376 (376)
T ss_dssp HHHHGGGGCTTCTTHHHHHHHHHTSCCCCSTTHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999997279716899999987234788888878999999999998298444179
|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=100.00 E-value=0 Score=28327.32 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~T~aIq~AIdac~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~ 80 (376)
T d1bhea_ 1 SDSRTVSEPKTPSSCTTLKADSSTATSTIQKALNNCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAK 80 (376)
T ss_dssp CCSSCCCCCCCCCEEEEEECCSSBCHHHHHHHHTTCCTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSG
T ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECEEECCCCEEEEECCEEEEECCCHH
T ss_conf 98654578989975686789997369999999987779999999699745699804897888789991997999738979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~ 160 (376)
T d1bhea_ 81 SFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSK 160 (376)
T ss_dssp GGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCE
T ss_pred HCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCEEECCCCEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 96566630236751576541268824863079972768813344162277641000123444466777897699999115
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~~~~~~ni 240 (376)
T d1bhea_ 161 NFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNI 240 (376)
T ss_dssp EEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEE
T ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEECEEECCCCCEEEECCCCCCCCCEE
T ss_conf 68997039955993699996885599996750588657776340025645099982533048981566046677774459
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~i~n~~~~~~~g~~iGs~~~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~ 320 (376)
T d1bhea_ 241 SILHNDFGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGS 320 (376)
T ss_dssp EEEEEEECSSSCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCCCC
T ss_pred EEEEEEEECCCCCEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99963896688730645668778899993258688704789825887607989999968993667448998144788888
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------9
Q 001846 864 -------------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~i~nIt~~Ni~~~~~~~~~l~g~~~~~~~~v~~~nv~i~~~~~~~~~nv~~k~ 376 (376)
T d1bhea_ 321 NVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVKLTSDSTWQIKNVNVKK 376 (376)
T ss_dssp CCCEEEEEEEEEEEECSCCEEEEECTTCSSCEEEEEEEEECCTTCEEEEESEEEEC
T ss_pred CCCEEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 79779518999079935325999868888823699984899759888788055329
|
| >d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nqo4-like domain: NADH-quinone oxidoreductase chain 4, Nqo4 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28259.89 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~ 80 (375)
T d2fug41 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE 80 (375)
T ss_dssp CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99885289999976988999898306652689998749996882212063111038799999999999991998899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~ 160 (375)
T d2fug41 81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf 99999999988767999999834520024388899999899999999846865520521202302279867889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 240 (375)
T d2fug41 161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD 240 (375)
T ss_dssp TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76088778898740367500002577533451023315765554555642133120067554556565534424776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApRG~L~ 320 (375)
T d2fug41 241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELG 320 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCTTCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSSSCBC
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 10213444421468999899748898744344110335699997554541013444566776899579999974886799
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------9
Q 001846 864 ------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------V 864 (1006)
=
T Consensus 321 H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 375 (375)
T d2fug41 321 YYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375 (375)
T ss_dssp EEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred EEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999989981899999898877999999996799167899998567976447898
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=28257.57 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~ 80 (375)
T d2dula1 1 LIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISED 80 (375)
T ss_dssp CEEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred CEEEEECCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 94899586899941787778788242877764107999999973998799868774099999998589978998259989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 81 AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999986375432211243323554336741004556567515767744578888817999999997044877999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 TaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS~~~~~y~Rv~vrv~~~~~~~~~ 240 (375)
T d2dula1 161 TATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKGDE 240 (375)
T ss_dssp EECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEESHHHHHH
T ss_pred EECCCHHHCCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf 93686120479917899972876137866501889999999999987429805999999824607999999137677887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~g~~~~C~~c~~~~~~~~~~~~~~~~~GPlW~G~L~d~efl~~~~~~~~~~~~~~~~~~~~ll~~i~eE~~~P~~y 320 (375)
T d2dula1 241 TLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFY 320 (375)
T ss_dssp HHTTEEEEEECTTTCCEEEEESSSCCSSSCEEEEECSCSBCHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHSCCSSCCE
T ss_pred HHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 88744817871898877775588999787867883673369999999998754057540569999999998614998298
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------9
Q 001846 864 ------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~l~~la~~lk~~~P~~~~~~~aL~~~Gy~asrtH~~p~~iKTdAp~~~i~~i~r~ 375 (375)
T d2dula1 321 DTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKR 375 (375)
T ss_dssp EHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSCHHHHHHHHBC
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHC
T ss_conf 5799998739999999999999997898899657899977137999999999709
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28256.96 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 80 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE 80 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 94546548977899999999999977998589989588997889999999999855876889986789999999864332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1o4sa_ 81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 160 (375)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 15655433323346728999999999981899989982586543102321122222233344332356136777775235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~ 240 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW 240 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf 76379981899885577999999999986887098124674003001333332112355778978999405142058866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~ 320 (375)
T d1o4sa_ 241 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV 320 (375)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEC
T ss_conf 44543233331012232212344333320002334321121023678889999999987874495685689407999979
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------9
Q 001846 864 ------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~~ 375 (375)
T d1o4sa_ 321 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 375 (375)
T ss_dssp SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 9997999999998599999976115899969999728999999999999999659
|
| >d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=28263.63 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~k~v~~f~e~~~~d~~lvGGK~AnLgel~~~G~pVP~GFviTt~Ay~~Fl~~n~~~~~~l~~~i~~~l~~l~~~~~~~~~ 80 (375)
T d1kbla3 1 AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG 80 (375)
T ss_dssp CCCEEEGGGCCGGGHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTSCBT
T ss_pred CCEEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 97789887799023643828899899999783998998885099999999826657487999999999866643275446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (375)
T d1kbla3 81 DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE 160 (375)
T ss_dssp CSSSCBCEEEEEECSSCCTTSSCEEEEETCCTTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 54320121010013432100014676630350456667651343233211310255542000011015678888876653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~~~~~a~gv~~t~~~~~~~~~~~~i~~~~glg~~vv~ 240 (375)
T d1kbla3 161 EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT 240 (375)
T ss_dssp HTCCCSGGGCCHHHHHHHHHHHHHHHHTTTTTCCCCCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEC
T ss_conf 04337777767888999999999999875148865553024445530146773146655554420341466666630102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eLa~~a~~iE~~yG~PqD 320 (375)
T d1kbla3 241 MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD 320 (375)
T ss_dssp CCCTTSSTTCEEEEEEEECTTTCCEEEEEEEEESCCHHHHHHTSSCCEEGGGHHHHCHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 21057774226641245675444321122000013466642431226654431321808999999999999998199614
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------9
Q 001846 864 ------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------V 864 (1006)
+
T Consensus 321 IEWAi~dG~l~ILQaRPv~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T d1kbla3 321 MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQL 375 (375)
T ss_dssp EEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHHHHSCGGGGGGG
T ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCC
T ss_conf 6999999989999766788657869999999998699799999872794211229
|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage RB69 [TaxId: 12353]
Probab=100.00 E-value=0 Score=28257.52 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~fyt~v~~~gn~i~~rg~d~nG~r~~~~~~f~Py~Yv~~~~~~~t~~ksl~G~~v~~v~f~s~~e~r~~~k~~~~~~~ 80 (375)
T d1ih7a1 1 MKEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGL 80 (375)
T ss_dssp CCCEEEEEEEETTEEEEEEECTTSCEEEEEECCCCEEEEECCTTSCCSCEETTSCBEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 98644022799999999999679989999954730699988999864534148817666746988999999997155543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1ih7a1 81 EALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVE 160 (375)
T ss_dssp CCBSCCCHHHHHHHHHTCSCCCCCGGGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCC
T ss_pred EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 11256641201012357654566754220455788970576656864232100011246615880999996377756654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~ 240 (375)
T d1ih7a1 161 EWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAK 240 (375)
T ss_dssp CCCHHHHHSCTTTTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHH
T ss_conf 32212233311124555655567985999829999999999999876498899871777887099999998640100233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~~~~~~~~~~d~~~~ 320 (375)
T d1ih7a1 241 RLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRY 320 (375)
T ss_dssp GGSTTSCEEEEEEECSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCSSCGGGHHHHHHHHH
T ss_pred HHHHCCCCCEEEEEEECCCCCEECCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHH
T ss_conf 44423785079998512554011035640002899998753023210005678888751466557555999987494686
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------9
Q 001846 864 ------------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~Y~~~D~~L~~~L~~kl~~i~~~~~~a~~~~v~~~~v~~q~~~~~~li~~~~~~ 375 (375)
T d1ih7a1 321 ISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKTWDAIIFNSLKE 375 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6520998999999999872899999999987959899738999999999999529
|
| >d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: MdoG-like domain: Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28191.73 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 F~f~~l~~~Ar~lA~~py~~p~~~lP~~l~~L~Yd~yr~Irf~~~~alW~~~~~~f~v~~fh~G~~f~~pV~i~~V~~g~ 80 (374)
T d1txka2 1 FSIDDVAKQAQSLAGKGYETPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA 80 (374)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCCCCCCCC----CHHHHTTCEECGGGCBTTTSSCSCEEEEEECBTTBCSCBEEEEECSSC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf 98799999999985189889876689878729998971636486521105799998787627876679877999970995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~i~fd~~~F~y~~~~~~~~~~~~~GfAGFRl~~pln~~~~~de~~~FlGASYFRavg~g~~YGlSARGLAIdTa~~~g 160 (374)
T d1txka2 81 VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSG 160 (374)
T ss_dssp EEECCCCGGGEECTTSCCCTTTSTTCCEEEEEEEECSSCTTCCEEEEEEESTTEEEECCTTCCCCCEEESCEESTTCTTC
T ss_pred EEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHEEEECCCCCCCCCHHHEECCCCCCCC
T ss_conf 68810188996678877784556678730599963467887443167771620224534897366311010005799987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 EEFP~F~~FWle~P~~~~~~~~vyALLDspSvtGAYrF~i~PG~~t~~dV~a~Lf~R~~v~~lGiAPLTSMf~~ge~~~~ 240 (374)
T d1txka2 161 EEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPS 240 (374)
T ss_dssp CBCCEEEEEEEECCCTTCCCEEEEEEEEETTEEEEEEEEEECSSSEEEEEEEEEEESSCCSCEEEEEEEECEEEBTTBCC
T ss_pred CCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 67987748996657899976999999239741007999997599889999889980676121350211365306898899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~dD~RPeVHDSDGL~i~~g~GE~iWRPL~NP~~l~~S~f~d~~p~GFGLlQRdR~F~~YqD~ea~Ye~RPSlWVeP~gd 320 (374)
T d1txka2 241 PANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGE 320 (374)
T ss_dssp SSCCSCSCEESCCEEEEECTTSCEEEEECCCCSSCEEEEEEEESCCEEEEECCCCCGGGTCCTTTCGGGCCEEEEEESSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf 88987875525664379737996782368898862175675589863233613777232306413233487378876676
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
-
T Consensus 321 WG~G~V~LvEIPT~~E~~DNIVAfW~P~~~~~~G~~~~f~Yrl~W~~~~p~~h~ 374 (374)
T d1txka2 321 WGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHA 374 (374)
T ss_dssp CCEEEEEEEECCCSCTTSCCEEEEEEESCCCCTTCEEEEEEEEEEESCGGGGSC
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 778679999768997243658999767887899996989989974789876679
|
| >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28183.77 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 v~rGL~Gv~v~eS~Is~IDg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~l 80 (374)
T d1ioma_ 1 VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESF 80 (374)
T ss_dssp CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99888998485655636748988899988559998703999999999978969799999999999997047988898999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~p~~~~pm~~l~~~vs~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~a~n~l~m~~ 160 (374)
T d1ioma_ 81 KRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMAN 160 (374)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 85343421157777766652125752223310689999998624305788899998469877788603679999877623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~p~~~~~~~l~~~lvl~aDHg~n~St~aaR~~aSt~~d~~~av~agl~al~GplhGga~~~~~~~l~e~~~~~~~~~~ 240 (374)
T d1ioma_ 161 GVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 240 (374)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf 89999899999875613452588765122422554058747788888887337866786528999999850675354999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~pNvd~~~~~l~~~l 320 (374)
T d1ioma_ 241 VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL 320 (374)
T ss_dssp HHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99998678877776764333553237999999998776427722789999998432430266898878689999999984
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
=
T Consensus 321 Gip~~~~~~lf~i~R~~Gw~AH~~E~~~~~~~l~RP~~~Y~G~~~r~~~p~~~R 374 (374)
T d1ioma_ 321 GFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR 374 (374)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSSCCCCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988565559999999999999999998557985277540069999988676669
|
| >d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NagB/RpiA/CoA transferase-like superfamily: NagB/RpiA/CoA transferase-like family: IF2B-like domain: Initiation factor 2b species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=0 Score=28181.45 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~l~si~~~~~~v~ilDQ~~LP~~~~~~~~~t~~~v~~AIk~M~VRGAPaIgvaaA~glala~~~~~~~~~~~s 80 (374)
T d2a0ua1 1 MSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS 80 (374)
T ss_dssp CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99887895016999699999985788998179999699999998856370259429999999999999985222753001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~el~~~L~~a~~~L~~sRPTAVNL~nAv~rv~~~i~~~~~~~s~~e~~~~ll~~A~~i~~eD~~~n~~Ig~~Ga~li~e 160 (374)
T d2a0ua1 81 GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILA 160 (374)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999985597542256899999999864287778999999999999999999999999999978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~ 240 (374)
T d2a0ua1 161 AAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAAS 240 (374)
T ss_dssp HHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHH
T ss_pred HHHHCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 88621788732676416753375113224677678997698617998046433464689999998616771899545256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~ 320 (374)
T d2a0ua1 241 SLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTK 320 (374)
T ss_dssp HHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTC
T ss_pred HHHHCCCEEEEEECCEEEEECCCEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66205642589852318984697886246499999999749988999115642767799775646678967734334566
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~v~np~fD~tP~~lIt~~iiTe~G~~~P~~~~~~~~~~~~~~~~ 374 (374)
T d2a0ua1 321 QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAPYYDIASIIAQA 374 (374)
T ss_dssp CBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCSSSSCCCHHHHHHCC
T ss_pred CEECCCCCCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 120257888602486831789699499788889861655467721479896239
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=28180.79 Aligned_cols=1 Identities=0% Similarity=-2.021 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~e~~~~~~~l~~~~~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 1 GNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY 80 (374)
T ss_dssp CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 93899999999639807899899999999999978295999678799999999986988839999499661743799843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~ 160 (374)
T d1o69a_ 81 LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT 160 (374)
T ss_dssp TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCEECCC
T ss_conf 44505734665321012123342100001233201111133310336888987651694410222342145678840688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~ 240 (374)
T d1o69a_ 161 FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLK 240 (374)
T ss_dssp SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 77557894257646534665222133689998530222233333333333458864244624566667777665431004
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~ 320 (374)
T d1o69a_ 241 KREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL 320 (374)
T ss_dssp HHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67899998864024323333456787773140233034433224310000000010001210999999999879987873
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
=
T Consensus 321 y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 321 WKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp CCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 854342966534787899899999839898969887799999999999999979
|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28180.42 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~f~~~~~~~~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el 80 (374)
T d1nd7a_ 1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV 80 (374)
T ss_dssp CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 96378999999988761689885599976565899999999716989847876999789874478711999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~ 160 (374)
T d1nd7a_ 81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160 (374)
T ss_dssp TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCHHH
T ss_conf 08866875664798855355874436805899998857999999984961387756899988549989899998857898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~v 240 (374)
T d1nd7a_ 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV 240 (374)
T ss_dssp HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 87499998546410466035787751278742254478997652068789999999999997211789999999869876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~ 320 (374)
T d1nd7a_ 241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE 320 (374)
T ss_dssp SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred CCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHH
T ss_conf 79898764889999986279987788999643261367899889999999877069999987446636899889864565
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
=
T Consensus 321 l~~~~~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e 374 (374)
T d1nd7a_ 321 LMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp CEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 435678875131468999999705440267669898899999999999997149
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=28179.50 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~P~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~ 80 (374)
T d1gwja_ 1 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQ 80 (374)
T ss_dssp CCCCCCCTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 99994999998418998978875874458988999998799999999984878799974798886578889873555554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ 160 (374)
T d1gwja_ 81 EAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPG 160 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 15666689998605862676554168655545588887100035556667655443565544567878860049999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~ 240 (374)
T d1gwja_ 161 IVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 240 (374)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 99999999999998099888732220346778887535764454343121100567889998998838753225553100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 241 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTAD 320 (374)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf 23687653247888876413110472277751576457886524999999998738878997895999999999869974
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
=
T Consensus 321 lV~~gR~~iadPd~~~K~~~G~~l~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~ 374 (374)
T d1gwja_ 321 AVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAEVGYTDYPFLDNGHDRLG 374 (374)
T ss_dssp EEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCCCCCCCSSCCCC
T ss_pred EEHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 844669998792299999759988888841125799988387888542235319
|
| >d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ERO1-like superfamily: ERO1-like family: ERO1-like domain: Endoplasmic oxidoreductin 1, Ero1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28178.79 Aligned_cols=1 Identities=0% Similarity=-2.121 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~s~~~vd~~N~~i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~ 80 (374)
T d1rp4a_ 1 GSFNELNAINENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM 80 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 97878999899988999986378960434338899898999432574998998803775565861024101046664112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~~~ 160 (374)
T d1rp4a_ 81 KEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGE 160 (374)
T ss_dssp EECCTTCGGGSBHHHHSSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCTTS
T ss_pred HHCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 21145653002204033320355554431101334456777754766300856235888873788999999975789876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~~~ 240 (374)
T d1rp4a_ 161 TGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEFS 240 (374)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43107788999988888888999998764167767637899999999736838889899999999999998888886467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt~GlgtALKIL 320 (374)
T d1rp4a_ 241 FCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKIL 320 (374)
T ss_dssp TTSSTTTTHHHHHHHHHHTTCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77877789999999999871666678888538841399999999999999999716676376756899887799999998
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
-
T Consensus 321 f~~~~~~~~~~~~~~~~L~R~ElvALiNt~~rlS~SI~~v~~F~~m~~~~~~~~ 374 (374)
T d1rp4a_ 321 FEINDADEFTKQHIVGKLTKYELIALLQTFGRLSESIESVNMFEKMYGKRLLER 374 (374)
T ss_dssp HHHHTCCHHHHHHHHHTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 535553346766664554599999999999999999999999999999764129
|
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28175.80 Aligned_cols=1 Identities=100% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~p~~~~~~~f~~g~~~yRiP~lv~~~~g~~l~A~a~~r~~~~d~~~~~iv~~rS~D~G~T~~~~Ws~~~~v~~~~~~~~~ 80 (374)
T d1so7a_ 1 LPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHR 80 (374)
T ss_dssp CCCSEEEEEEECTTCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTEE
T ss_pred CCCCCEEEEEECCCCCEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf 99431267768895368647799985999999999687677668987699999637883043466798994778989955
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~~~~~ 160 (374)
T d1so7a_ 81 SMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGH 160 (374)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSSC
T ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 56212789899997999998506877653224688885408999688886335686026610145435774366520233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~r 240 (374)
T d1so7a_ 161 CLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHLRAR 240 (374)
T ss_dssp CEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCSBSEEEEEEEEEEC--CEEEEEEEEESSSEE
T ss_pred CEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCE
T ss_conf 12664048868866676516766678971499999358754110156568888422588851456643677425478967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~S~D~G~tW~~~~~~~~l~~~~~~~~~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~D~G~tW~~ 320 (374)
T d1so7a_ 241 VQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE 320 (374)
T ss_dssp EEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESSTTCGGGCCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCC
T ss_conf 99996279966543202333448888885314898335434444688369983788988887608999998889916478
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~i~~g~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f~~~~l~~~~~~~~ 374 (374)
T d1so7a_ 321 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTLKQAFPAEY 374 (374)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEEHHHHCGGGC
T ss_pred CEEECCCCCCCCHHEECCCCCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCC
T ss_conf 548688997684525867998885699999956997657999989999175779
|
| >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28182.22 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T d2bvca2 1 SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKG 80 (374)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98869999999999997799870357726589997145445566776201363000246787656788887786656566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmp 160 (374)
T d2bvca2 81 GYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMP 160 (374)
T ss_dssp CSCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 50002000226899999998787469763763215666825887067630668999999999999999986397477764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 KP~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg~ 240 (374)
T d2bvca2 161 KPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQ 240 (374)
T ss_dssp CSSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEE
T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf 31567887660079974158988655566655567999999999985209888987378742653489875644774046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl~ 320 (374)
T d2bvca2 241 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLS 320 (374)
T ss_dssp TCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSHH
T ss_pred CCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHH
T ss_conf 76655311024468975626885278833107899999999866656412344687778513299657658132501799
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
|
T Consensus 321 eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~ 374 (374)
T d2bvca2 321 DVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 374 (374)
T ss_dssp HHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC
T ss_pred HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 999999759787876563789999999999999999999689999999604899
|
| >d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Psychrophilic chitinase B species: Arthrobacter sp., tad20 [TaxId: 1667]
Probab=100.00 E-value=0 Score=28171.62 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~g~rvvgYy~~W~~y~r~~~~~~l~~~i~~~~lTHi~YAFa~i~~~~~~~~~~~~~~~~~~~g~~~~~d~~~d~ 80 (374)
T d1kfwa1 1 PLTSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADF 80 (374)
T ss_dssp CCBSSBTTBEEEEEEEGGGGSTTCCCHHHHHHTSCGGGCSEEEEEEECBCTTTCSBCCCEECCCSSTTTTTTCEEHHHHH
T ss_pred CCCCCCCCCEEEEEECCCEECCCCCCHHHCCCCCCHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98888888789999895400588898634767798524987999123014875532024311134778752347606541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lK~~~p~lKvllSiGGw~~s~~F~~~a~~~~~R~~Fi~s~v~~~~~~~l~ 160 (374)
T d1kfwa1 81 GMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP 160 (374)
T ss_dssp TCCCCTTTSSSSSCCCTTCSCCHHHHHHHHHHTTCTTCEEEEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33334444456655653321013689999998618997599998189877763111047889999999999999981975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~FDGiDiDWEyP~~~~~~~~~~~~~~~D~~nf~~Ll~eLR~~ld~~~~~~~k~~~Ls~A~~~~~~~~ 240 (374)
T d1kfwa1 161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI 240 (374)
T ss_dssp EETTEEETTTTTTTCCEEEEECSCTTSSCSSTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 21111232233244663011226514446777777887648999999999999999987563575389999852540011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~d~~~i~~~vD~invMtYD~~G~w~~~~tg~~apLy~~~~~~~~~~~~~svd~aV~~~~~~Gvp~~KlvlGipyd~ 320 (374)
T d1kfwa1 241 DAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAADN 320 (374)
T ss_dssp HHHTTTCGGGGGTCSEEEECCSCSSCTTSTTBCCCSSCSSCCTTCCSCGGGCCCHHHHHHHHHHTTCCGGGEEEEEESCC
T ss_pred CCCCCCHHHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 23473266452004799997144046789987776675779977877777770699999999987999899389846799
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------9
Q 001846 864 -----------------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~si~~K~~y~~~~glgG~m~W~~~~D~~g~Ll~a~~~~l~~~~~~~~~~~~p~ 374 (374)
T d1kfwa1 321 IATTKQKTDYIVSKGLGGGMWWELSGDRNGELVGAMSDKFRAAAPGPVTEAAPP 374 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGCTTCHHHHHHHHHHHHSSCCSCCCBCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999999998569953999975579997499999998458899987788998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=100.00 E-value=0 Score=28103.69 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~a~~~~~~~~~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l 80 (373)
T d2madh_ 1 SSASAAAAAAAAALAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEF 80 (373)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEE
T ss_conf 90565434310132145678986563018999789997342257876599998999979999957988607986899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEE
T ss_conf 99960577532124531899997778938889726885136851689708998589937999986987467762368728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 99824520699962899199999479939999747742667886300366753043458878994299925896599997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~ 320 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV 320 (373)
T ss_pred CCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 68990789776305647578664136741335771499759995488824786258986999989999698986689982
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~~ 373 (373)
T d2madh_ 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNEA 373 (373)
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 58999989998999996799929999999998999988889898189984689
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28104.67 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~MkkI~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~~ 80 (373)
T d1v4va_ 1 GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQA 80 (373)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99769999873697999999999997189998899992688255637122408886656787888887789999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (373)
T d1v4va_ 81 ARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLK 160 (373)
T ss_dssp HHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
T ss_conf 66664037640011136753103778898762122241343455433567616666655223443255122156666666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Ge~~~~I~~vG~p~~D~i~~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 240 (373)
T d1v4va_ 161 EGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVV 240 (373)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHH
T ss_pred HCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 30454213442662155777654311000223445531688426555312789999999986533565035640342221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~n~~~~~~l~~~~~l~ll~~s~~vignSssgi~Ea~~lg~P~Inir~~~eRqeg~~~g~nvlv~~d~~~ 320 (373)
T d1v4va_ 241 REAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEG 320 (373)
T ss_dssp HHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHHHHHHTSEEECCSCHHH
T ss_pred HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCEEEECCCCHHHHCCHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHH
T ss_conf 03555543033320011100078888876430168506412222003205868984887669878962904975899999
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
-
T Consensus 321 I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~~~~~~~~~ 373 (373)
T d1v4va_ 321 VYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGPRPEDWLP 373 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTTSSCCCCCCCC
T ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999719898864024889898987999999999998489989878899
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=28104.32 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFP 80 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99899989688999999999868998999958998858668954299899538658727887999999983885212332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1seza1 81 LSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF 160 (373)
T ss_dssp SSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHTTHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCHH
T ss_conf 11233212244333221122134442122211355566788887642000000111000000012223432001011012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 240 (373)
T d1seza1 161 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKD 240 (373)
T ss_dssp HHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 21010233110025567899987641001445567876404322222101234333203540453034612799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~ 320 (373)
T d1seza1 241 LREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGH 320 (373)
T ss_dssp SCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCT
T ss_pred HCCCEEECCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
T ss_conf 50655764987899999678542113552786124789746998899999986577653365557775332330100245
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~~ 373 (373)
T d1seza1 321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVS 373 (373)
T ss_dssp THHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78867626423478999999972578765399999999999999999875289
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=28104.06 Aligned_cols=1 Identities=0% Similarity=-0.195 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~pvIG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~ 80 (373)
T d1qo0a_ 1 RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH 80 (373)
T ss_dssp CCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 98899972886842655299999999999998850996886889999769999999999999999608966998041333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~ 160 (373)
T d1qo0a_ 81 TRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQ 160 (373)
T ss_dssp HHHHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 24456899997199678223354345687336604671787777888987515742553467764037888653111220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (373)
T d1qo0a_ 161 HGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 240 (373)
T ss_dssp TTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHTTSCHHH
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 36733678971676442046799999875188732320235047779999998457656640125545248776444443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~d~~~i~~aL~~~~~~~~~G~ 320 (373)
T d1qo0a_ 241 AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGP 320 (373)
T ss_dssp HTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHSSCCEEETTEE
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEE
T ss_conf 05720102442000027789999999987398788770799999999999999998689999999999855953078365
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
+
T Consensus 321 i~f~~~~~~~~~~~~i~q~~~dg~~~vv~~~~~~v~p~p~~~~~~~~~w~~~~ 373 (373)
T d1qo0a_ 321 VRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASM 373 (373)
T ss_dssp EEECTTTSBEEBCCEEEEECTTSCEEEEEECSSCBCCCTTCCSCCGGGGGGGC
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99838998346866999993699589996069836799974888865455569
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=100.00 E-value=0 Score=28102.21 Aligned_cols=1 Identities=100% Similarity=1.002 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~~g~~l~~~~~~~y~~~G~~~~~~i~ 80 (373)
T d1ogmx2 1 LPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIE 80 (373)
T ss_dssp CCGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEECCCEEEECCCEEECCCCEEEECCCCCEEEEEEE
T ss_conf 98886589898846875310465244689888998994638387430474588738669636743776079857986798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~~~~~~v~i~ 160 (373)
T d1ogmx2 81 YFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQ 160 (373)
T ss_dssp ECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESCEEECCSSCCEEECSSSCEEEE
T ss_pred ECCCCEEEEECCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECEEEECCCEEEEEECCCCEEEEE
T ss_conf 63765089971207838866632566543223346776567755899984227999677997899169987268759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~i~~~~~~~~n~dgi~~~~~~~i~~~~~~~gDD~i~~~s~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~ 240 (373)
T d1ogmx2 161 ISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVI 240 (373)
T ss_dssp EEEEEEECCCSTTCCCCBCCTTCEEEEEEEEESSCSEECCSTTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 78999668877787005324878999528963887799657988999799978875247883667887631599915998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~nI~~~~~~~~ 320 (373)
T d1ogmx2 241 HTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGT 320 (373)
T ss_dssp ECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEETTCBCCSTTCT
T ss_pred CCEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 85611220033434443322112100689869992899919998753676999876788888332189984499804571
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~Ni~i~~~~i~~~n~~~~~~~~~~~~g~~~~~~~~~ 373 (373)
T d1ogmx2 321 GESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS 373 (373)
T ss_dssp TCEEECCCTTCCEEEEEEEEEETTEECCTTTCSTTSSSCEEECGGGTTTCEEC
T ss_pred EEEEEECCCCCCCCEEEECEEEECEEEECCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 66875014687388578676991969864777777321678777504531229
|
| >d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium vivax [TaxId: 5855]
Probab=100.00 E-value=0 Score=28101.36 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~I~iGtP~Q~~~v~~D 80 (373)
T d1miqa_ 1 HLTLAFKIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFD 80 (373)
T ss_dssp CEEEEEEEECHHHHHHHHSCHHHHHHHHHHHHHHHTTSCTTCCCCCBTTBCCCGGGTBCEEEECCCEETTTTEECCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 92233303582467787766666889887644331134232122256787687255169789999998799989999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 TGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1miqa_ 81 TGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPI 160 (373)
T ss_dssp TTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGTTH
T ss_pred CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf 99625189879999743468982389889853388963899928817999999788897674267668999840356753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~ 240 (373)
T d1miqa_ 161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQ 240 (373)
T ss_dssp HHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCHHCCCEEEEEECCCCCEEE
T ss_conf 23566563566444433578854301124443225653278871367888715642677830114424687114552489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~P~itf~f~g~~~~l~p~~y~ 320 (373)
T d1miqa_ 241 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 320 (373)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEEEEEECCEECCCCCEEECCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEE
T ss_conf 99998778675487416862677213157899999999839755068970675344688863999999999998889906
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak~ 373 (373)
T d1miqa_ 321 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAKN 373 (373)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCC
T ss_conf 88996799899999998888999899717943769999999999999998079
|
| >d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione synthetase ATP-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28100.89 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~s~~~~~~l~~~~~dwa~~hGl~~~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~n~L~~~vS~D~~~~~~f 80 (373)
T d1m0wa2 1 PSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQDMAQPDSY 80 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEECCTTGGGCTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98799999999999999971947436877789886145787952776888999999999999999999997240426899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 L~~~l~~~~~~D~~Ft~~L~~i~~~v~~~g~~~~q~i~Lgl~RSDYMld~~~~~~~~KQVE~NTIa~sfg~ls~~v~~lH 160 (373)
T d1m0wa2 81 LHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLSEKVDRLH 160 (373)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHEEEEEEEHHHHHHHHHHHHHH
T ss_conf 99998767405889999999999999854446243258744301321477666523441230020020121888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~l~~~~~~d~~~~~~~d~~~~~~~~~~~le~~~a~~~~~~l~g~KKvQq~La~pgvLe~Fl~d~~~~~~lr~tF~~ly~ 240 (373)
T d1m0wa2 161 SYLNRANKYDPKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYP 240 (373)
T ss_dssp HHHHHTTSSCTTSCSSCGGGBCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTTSHHHHTTTCCCHHHHHHHHTTCCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 99985557788775016886545155189886666466776467652672103668898867988999999998504786
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 Ld~~~~g~~~~~~Al~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~e~~ayILMerI~Pp~~~~~~~~r~~~~~~~~ 320 (373)
T d1m0wa2 241 LDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEP 320 (373)
T ss_dssp CSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGGGHHHHHHTSCGGGGGGEEEEECCCCCCBCSCCEEETTEEECCC
T ss_pred CCCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECC
T ss_conf 78502128999998619153897455557665401479999987478444113307854179988875997299011277
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------9
Q 001846 864 ----------------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------------V 864 (1006)
-
T Consensus 321 ~vSELGifG~~l~~~~~v~~N~~~G~LlRTK~~~~nEGGVaaG~g~lDS~~L~ 373 (373)
T d1m0wa2 321 IISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNEGGVAAGFGCLDSIILY 373 (373)
T ss_dssp BEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCEEETTEEEECCEEECCEEEC
T ss_pred EEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCCCCCEECCEEECCCHHCC
T ss_conf 32033041899978977997165028896279988876810354223422009
|
| >d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Queosine tRNA-guanine transglycosylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=0 Score=28032.42 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~Fei~~~d~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gglh 80 (372)
T d1r5ya_ 1 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH 80 (372)
T ss_dssp CCSCEEEEEEEETTEEEEEEEETTEEEEESEEECBCTTSSCTTCCHHHHHHTTCSCEEEEHHHHHHTTCHHHHHHTTCHH
T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCCHHHHHCCCHH
T ss_conf 99607999965585004899979977679978754778808847999999728988833188887587617877426513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~f~~~~~~iltdsGg~q~~sl~~~~~~~~~gv~f~s~~~g~~~~ltpe~~i~~q~~ig~DI~~~Ldd~~~~~~~~~~~~~ 160 (372)
T d1r5ya_ 81 SFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS 160 (372)
T ss_dssp HHHTCCSCEEEECSHHHHC-CC-CCEEETTEEEC---------CBCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 34204565200247654323223455577885353226872111000779999985088467522446653101678899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~~~~~ 240 (372)
T d1r5ya_ 161 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPM 240 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999999875055667666321131541265688889999986213732122445675067788899850200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~sraY 320 (372)
T d1r5ya_ 241 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY 320 (372)
T ss_dssp SCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf 12011022047898789888360589954543113111136157259832321232335689869898992325159999
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
-
T Consensus 321 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~ 372 (372)
T d1r5ya_ 321 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF 372 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9877638836899999999999999999999999985999999999999649
|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Oxalate decarboxylase OxdC (YvrK) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28031.15 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~g~~~~gp~~~~~~~~~~d~~~~~~td~g~~~~~~~~f~~~~~~~~~gg~~r~~~~~~lp~~~~~a~~~~~L~ 80 (372)
T d1j58a_ 1 PQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRLK 80 (372)
T ss_dssp CCSEETTEECCCCSCCCHHHHHHCHHHHSCCTTCBSCCCCCEECGGGSCCEEETTEEEEEECTTTCTTCSSCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHEEEEEC
T ss_conf 98604899998889877666531864458997766755105642133544236797147864443800331100589988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~ 160 (372)
T d1j58a_ 81 PGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQ 160 (372)
T ss_dssp TTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCEEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEE
T ss_conf 99676873637643899995779999994899489988536988998999779997179995899997788866653043
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~~~~gG~~~~~d 240 (372)
T d1j58a_ 161 LTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIAD 240 (372)
T ss_dssp HHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCEECSSEEEEEES
T ss_pred ECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEC
T ss_conf 10121359878998761999899863431223312456887423454147788998763230224688415774679926
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e 320 (372)
T d1j58a_ 241 STNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDE 320 (372)
T ss_dssp TTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSS
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCC
T ss_conf 33477667506999998899645887799972999999790999998579806899825985899899974999987999
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
|
T Consensus 321 ~l~~l~vf~s~~~~~i~~~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k~~vv 372 (372)
T d1j58a_ 321 PLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHPVV 372 (372)
T ss_dssp CEEEEEEESSSSCCCEEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSCCSBC
T ss_pred CEEEEEEECCCCCCEEEHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 8899999789996545687876549999999885969999998875687669
|
| >d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: HDAC homologue species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=28028.82 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~k~~li~~~d~~~~~~g~~HPe~p~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 80 (372)
T d1c3pa_ 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG 80 (372)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred CEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 90899968201587897843959799999999999769987880771898999999871899999999974544467522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~~~~R 160 (372)
T d1c3pa_ 81 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR 160 (372)
T ss_dssp HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 31014688767878889999998753358897653224542241246534421024313640460999999998744674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 V~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~l~p 240 (372)
T d1c3pa_ 161 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI 240 (372)
T ss_dssp EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47874345677762577761477543000257777788888772236787665412414488655628999999986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~~~ 320 (372)
T d1c3pa_ 241 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEK 320 (372)
T ss_dssp HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99866976899978816677686568868888999999999985899699975878588999999999999829999845
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 372 (372)
T d1c3pa_ 321 LNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA 372 (372)
T ss_dssp CCHHHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 6877887631588777424467033200247855535778899999998509
|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage T4 [TaxId: 10665]
Probab=100.00 E-value=0 Score=28027.60 Aligned_cols=1 Identities=0% Similarity=-1.955 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~fytnv~~~gn~il~rg~~~~G~r~~~~~~f~Py~y~~~~~~~~~ksl~G~~v~~v~f~s~~~~r~~~~~~~~~~~~~~ 80 (372)
T d1noya_ 1 DEFYISIETVGNNIVERYIDENGKERTREVEYLPTMFRHCKEESKYKDIYGKNCAPQKFPSMKDARDWMKRMEDIGLEAL 80 (372)
T ss_dssp CCEEEEEEEETTEEEEEEECTTSCEEEEEEECCCSEECGGGGTCSSCTTTTCCCCCEECSSHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCEEEEEECCEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 98661369999999999996599799999656058999858997858359908877857999999999997256663464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (372)
T d1noya_ 81 GMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDA 160 (372)
T ss_dssp HHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCH
T ss_pred ECCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 02343413312316545556623225773022002346688631010000222144159879999962656566556555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~ 240 (372)
T d1noya_ 161 KLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSP 240 (372)
T ss_dssp HHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 55433222346665545668759998099999999999999872888799970678616799999987456310111221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d~~~l~~Yn 320 (372)
T d1noya_ 241 IGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYN 320 (372)
T ss_dssp TSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCEEEEECCCEEEEEEHHHEECCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCHHHHHEEC
T ss_conf 26521001101356522564033148975101200002330024344310001146777742249999874925702201
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
=
T Consensus 321 i~D~~L~~~L~~kl~~i~~~~~la~~~gvp~~~v~~~~~~~~~~~~~~l~~~ 372 (372)
T d1noya_ 321 IIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVMSPIKTWDAIIFNSLKGE 372 (372)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGGCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9988999999998757999999999989398993749999999999986259
|
| >d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Antitrypsin, alpha-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28027.21 Aligned_cols=1 Identities=0% Similarity=0.104 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1qlpa_ 1 FNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRT 80 (372)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCSSSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 93220769999999999986129798299878999999999998546799999999709998778689999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~l~~~n~i~~~~~~~l~~~f~~~~~~~f~~~~~~~df~~~~~~~~~iN~wv~~~T~g~i~~~~~~~~~~t~l 160 (372)
T d1qlpa_ 81 LNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVF 160 (372)
T ss_dssp HSCSSCCCCEEEEEEEEEETTCCBCHHHHHHHHHTSCCEEEEECTTSHHHHHHHHHHHHHHHTTTSSCSCCCCCCTTCCE
T ss_pred HHCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 53247614451010023316776478999999987275241455444699999999999998579875545678974155
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~f~~~~~~~l~~~~~~lp~~~~~~~~il~~~~~~l~~ 240 (372)
T d1qlpa_ 161 ALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQH 240 (372)
T ss_dssp EEEEEEEECCCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEECTTCHHH
T ss_pred HHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHH
T ss_conf 54323213043113566210445654036885489750000153111014667869995256777259999778679899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~~~L~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGl~~~F~~~ad~~~i~~~~~l~vs~v~q~~~i~v~E 320 (372)
T d1qlpa_ 241 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDE 320 (372)
T ss_dssp HHHHCCHHHHHHHHHCCCCEEEEEEEECEEEEEEEEHHHHTGGGTCCGGGSTTCCCTTTBSSSCCCCCEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCHHHHHHHCCCHHHHCCHHHHCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf 98764599999998735644789998789985211577877755946554225453176788981566378899999878
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
=
T Consensus 321 ~Gteaaa~t~~~~~~~s~~~~f~~drPFlf~I~~~~t~~iLf~G~v~~Pt~~ 372 (372)
T d1qlpa_ 321 KGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK 372 (372)
T ss_dssp CSSSSCCCCCCCCCCSSCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred CCCCHHHHHEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 8400323210102357899759926998999999899939999992799899
|
| >d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28026.05 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~tp~~~gfrmPaEwe~~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~Ia~~e~V~vl~~~~~~~~~~~~~~~nV~~~~ 80 (372)
T d1vkpa_ 1 RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVE 80 (372)
T ss_dssp CCCGGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSEEEE
T ss_pred CCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEE
T ss_conf 97935549976898563615999868998621345556899999999997389849999797999999975746728999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~dD~W~RD~GPifv~~~~~~~~~~~~~~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~lvlEGG 160 (372)
T d1vkpa_ 81 MSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGG 160 (372)
T ss_dssp CCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHSSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCGG
T ss_pred CCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 15898788614877998088642334678557860201366655555421345677999987412168744567166389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~ie~dG~GtlltTe~clln~nRNP~~sk~~ie~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~~arFi~~~til~~~~~d 240 (372)
T d1vkpa_ 161 SIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDD 240 (372)
T ss_dssp GEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCTTTTCCGGGTEEEEETTEEEEEECCC
T ss_pred CEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCC
T ss_conf 77989996299756782077889998999999999986297559997670027988765500058971799079873288
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~y~~~~~~~~~L~~~~d~~g~~~~ii~lp~p~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (372)
T d1vkpa_ 241 ETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAP 320 (372)
T ss_dssp TTSTHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEC
T ss_conf 76855899999999999887505884317983034540003200145334666554568988655347999999999995
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
-
T Consensus 321 ~ygd~~~D~~A~~~l~~~fP~r~Vi~Id~~~~i~~~gG~iHCiT~q~Pa~~~ 372 (372)
T d1vkpa_ 321 QFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT 372 (372)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCTGGGEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 7989430799999999988898799827889998579853575777779999
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28023.15 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~p~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1teda_ 1 AQLPPAPPTTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPAT 80 (372)
T ss_dssp CCCCCCCCCCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSC
T ss_pred CCCCCCCCCCEEEEEEEEEECCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHCCCC
T ss_conf 99897999844899988996799178399999999860678177899999998359863514516543461445414887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~r~~~~~e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~a 160 (372)
T d1teda_ 81 IRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNA 160 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 88888877737999999999999997599988998899964689888668899876514687625766004674179999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 L~~A~~~l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
T d1teda_ 161 LGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTE 240 (372)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCT
T ss_pred HHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999998559976521653112002104777613565655413632047750477645567750587035642168876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~i~~~i~~~Lgl~~ek~~~s~~~l 320 (372)
T d1teda_ 241 DGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 320 (372)
T ss_dssp TSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHHHHHHHHHHTCCGGGGHHHHHHH
T ss_pred CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 55456778776320014777999998889999987876399878742232247659999999998198978816568888
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------9
Q 001846 864 ---------------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~GN~~sasip~~L~~~l~~g~~~~g~d~vll~~fG~G~s~~~~ll~~~~~ 372 (372)
T d1teda_ 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIRR 372 (372)
T ss_dssp HHHCBCTHHHHHHHHHHHHHSCSSSSSSEEEEEEEEETTTEEEEEEEEECCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHEEECC
T ss_conf 4047748879999999999838878899889999995899589876325229
|
| >d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Viral chemokine binding protein m3 superfamily: Viral chemokine binding protein m3 family: Viral chemokine binding protein m3 domain: Viral chemokine binding protein m3 species: Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
Probab=100.00 E-value=0 Score=27957.79 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknkmgvpwvsveelgqeiitgRL 80 (371)
T d1mkfa_ 1 HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRL 80 (371)
T ss_dssp CCSEEEECCCCTTTSTTHHHHHHHHSSSCCSSTHHHHHHHHHHHHHCTTGGGGGCSEEEEEEEECEEEGGGTEEEEEECC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCC
T ss_conf 98774343323888445425665207821003677778899987642887751430244468846569884125500676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 P~Ps~~~~~~~~~vrVLV~AEs~tpee~P~~~~~A~~~m~T~~~~~~LsD~N~~F~s~~~~vW~i~i~k~~VD~~mLT~A 160 (371)
T d1mkfa_ 81 PFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRA 160 (371)
T ss_dssp CCSSCCCCTTSCEEEEEEEEECCCCSSCCSSCCCEEEEEECSSCEEEECGGGEEEEETTEEEEEEEEEGGGSSTTCEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEECCEEEEEEECCHHEECHHHHHHH
T ss_conf 77755787667648999995179987880788765441044554785024643787400279999646001122143355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~FL~~~P~~k~T~mi~Y~~TFTWCGeigai~e~~~P~PS~~A~~PVC~~~~RY~~~kF~~~DGC~~Et~~~~~s~i~P~~ 240 (371)
T d1mkfa_ 161 TFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFG 240 (371)
T ss_dssp EESSCCTTCEEEEEEEEETTEEEEEEEEEECTTSCCBCCSEEEEETTSSGGGGSSSTTTTTTTCCGGGTSCCEEECSCTT
T ss_pred HHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCEEECCCC
T ss_conf 67754767608998436565053403254368778997610038542004665347524136743000555640555578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~P~~qa~mNTC~C~~KY~~~~L~~~~~i~i~~ia~~~~~~~P~YVm~~YF~St~~N~~~~s~~L~~C~~~mtsH~G~~~~ 320 (371)
T d1mkfa_ 241 GPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTS 320 (371)
T ss_dssp SCSSCEEEESTHHHHHHCSSCCCCCSCEEEEEEECGGGCCSCEEEEEEEECCCCCCTTSCCCCEEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEE
T ss_conf 98440303532058882476577334188876225233467406788750666667668898644899998743673013
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~s~QCP~~~~~G~~q~VL~~~~~pt~~~~iVGvsi~~eGQq~Ri~Y~Gdh 371 (371)
T d1mkfa_ 321 TSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH 371 (371)
T ss_dssp CCCSSCCEEEEECSSTTEEEEEECGGGGGGEEEEEEEETTEEEEEESSCCC
T ss_pred EECCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 313557556730676068999982466764056999974700021012589
|
| >d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria meningitidis, (serogroup A) [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerate kinase I superfamily: Glycerate kinase I family: Glycerate kinase I domain: Glycerate kinase GlxK species: Neisseria meningitidis, (serogroup A) [TaxId: 487]
Probab=100.00 E-value=0 Score=27957.79 Aligned_cols=1 Identities=0% Similarity=1.965 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 MkiliApDsFKgslsA~ea~~ai~~g~~~~~p~~~~~~~P~aDGGEGt~dal~~~~~g~~~~~~v~gplg~~v~a~~~~~ 80 (371)
T d1to6a_ 1 MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLEEKCLQVTGSFGQKEVMRYFQK 80 (371)
T ss_dssp CEEEECCCCBTTTBCHHHHHHHHHHHHHHHCTTCEEEECCCCSSSTTHHHHHHTTSCCEEEEEEEECTTSSEEEEEEEES
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECC
T ss_conf 90999943888862899999999999998599988999730648543999999863997999999899998157899637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~tAvIE~A~asGL~l~~~~~r~p~~~tT~G~GelI~~Al~~G~~~iilglGGSAT~DgG~G~L~ALG~~f~D~~g~~l~ 160 (371)
T d1to6a_ 81 EQLALFEVADLVGLGKIPLEKRNPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP 160 (371)
T ss_dssp SSEEEEETHHHHBGGGSCTTSCCTTSCCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHHHHTTTCEEECTTSCBCC
T ss_pred CCEEEEHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCC
T ss_conf 87543016663676303887777112246119999999997699769997158636616789999614536888999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~g~~L~~i~~id~~~~~~~l~~v~~~ia~DV~npL~G~~GAa~vfgpQKGa~~~~v~~le~~l~~~a~~~~~~~~~~~g 240 (371)
T d1to6a_ 161 ACGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFEVVDQAIQDFYEKVSPATLKLKG 240 (371)
T ss_dssp SSGGGGGTCCEEECSSCCCCCTTCEEEEEESCCCCSSSTTSHHHHHSGGGTCCGGGHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred CCCHHHHHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC
T ss_conf 86153675002662368711342849999556765547878645650445887899999999999999984311015678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~gaAGG~~~~l~~~l~a~~~~G~~~v~~~~~l~~~i~~aDlVITGEG~~D~QSl~GK~p~~va~~ak~~~pviai~G~v~ 320 (371)
T d1to6a_ 241 AGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLV 320 (371)
T ss_dssp TTTTTTHHHHHHHHSCCEEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCTTCCEEEEESEEC
T ss_pred CCCHHHHHHHHHHHHCCEECCCHHHHHHHHCHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 63102578999999588846509999988599978356998997887552321265767999999767998899977557
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~~~~~Gi~~~~si~~~~~~l~~a~~~a~~~L~~~a~~i~r~l~~~~~ 371 (371)
T d1to6a_ 321 EDLPSLPFENIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI 371 (371)
T ss_dssp TTCCCSSBTTEEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 886678754962999758899999999998999999999999999842379
|
| >d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27955.63 Aligned_cols=1 Identities=0% Similarity=0.603 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 MnsfG~~lr~ttfGESHG~alg~vidG~PaG~~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtGsPI~ 80 (371)
T d1r53a_ 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (371)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEE
T ss_conf 98776534898415478884489980508588838999999996459999998866899984899243208978455207
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~kyg~~d~~gggrsSaReTa~rvaaGaia~~~L~~~~gI~v~s~V~~IG~ 160 (371)
T d1r53a_ 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (371)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf 88814532310010133324668741776764486533565415688899999999999999998489799999998611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~~~~~~~d~~~~~~~~~~~~~~~~~~~~vrc~D~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLG~p~fdkLda 240 (371)
T d1r53a_ 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (371)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EECCCCCCCHHHHHCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
T ss_conf 77154345612332214465655553196107886888999999999972599755089999970589877720044145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~LA~A~mSIpAVKgVEfG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~tN~aGGi~GGiSnG~pi~~rva~KP~sSi~~~q 320 (371)
T d1r53a_ 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ 320 (371)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 88887742410025650456117645562247762205788864245688777546764896069999857810046877
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
-
T Consensus 321 ~Tvd~~~~~~~~~~~gRhDpc~vpra~pV~Eam~alvlad~~L~~~~~d~~ 371 (371)
T d1r53a_ 321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFS 371 (371)
T ss_dssp ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 547757978776106988981726548999999999999999998516789
|
| >d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: HybD-like family: Germination protease domain: Germination protease species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=0 Score=27953.68 Aligned_cols=1 Identities=0% Similarity=0.270 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~~~~l~~y~iRTDLAlEa~E~~~e~~~~~~~~~ei~GV~~~e~~~~~ikiT~V~I~e~Ga~~mgKp~G~YiTiEap~l 80 (371)
T d1c8ba_ 1 MEKELDLSQYSVRTDLAVEAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVTLESVGI 80 (371)
T ss_dssp CCCCCCCCCCCCCCCCTTHHHHHHHHHCCC---------CCCSEEEEEEEETTEEEEEEEECHHHHTTTTSCCEEEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
T ss_conf 98655521143537878988998865320113467668769888862986899999782689985899851799846877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~D~~~~~e~~~~v~a~~l~~l~~~~~~~~~~~vLVVGLGN~~VTPDALGP~vv~~l~VTRHL~~~~p~~~~~g~r~Vs 160 (371)
T d1c8ba_ 81 REQDTEKQEEAMEEVFAKELNFFIKSLNIPDDASCLVVGLGNLSVTPDALGPKAVDNLLITRHLFELQPESVQDGFRPVS 160 (371)
T ss_dssp CCCSSSSSSHHHHHHHHHHHHHHHHHTTCCTTCCEEEEECSCSSSGGGCHHHHHHTTCCCCHHHHHHSCCSSCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHEECCEEEEHHHHHHCCHHHCCCCCEEE
T ss_conf 75678899999999999999999863178988817999688877786563701113363343045547254507871256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 aIaPGVmg~TGiET~EIIkgiVek~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~etLGVPVIAI 240 (371)
T d1c8ba_ 161 AIVPGVMGMTGIETSDIIFGVVKKVNPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISYETLGIPVIAI 240 (371)
T ss_dssp EECSGGGCCCSSCHHHHHHHHHHHHCCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSSCCC-------
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEE
T ss_conf 88587550344249999999987518989999601013752333564786677858887767555637987829988997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 GVPTVVdAatI~~Dtid~~~~~~~~~~~e~~~~s~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ek~~Li 320 (371)
T d1c8ba_ 241 GIPTVVDAVSITSDTIDFILKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRRLI 320 (371)
T ss_dssp --CCCEEEEEEECCEESCCCHHHHTTTTTCC---------------------------------CCCCSSCCCTTHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 68806601998789999999987543201346531113332333422222222343112204688776246889999999
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
=
T Consensus 321 ~EvL~P~~~~l~VTPKeID~~I~~~s~iIs~giN~ALhp~i~~e~~~~y~~ 371 (371)
T d1c8ba_ 321 HEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNAALHHEVDQENFGAYTH 371 (371)
T ss_dssp HHHTCSSCTTEEEEETTHHHHHHHHHHHHHHHHGGGGSCCCCSCCCCSSCC
T ss_pred HHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 997572479655675738999999999999898898677888778764339
|
| >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=27953.38 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~rGL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~ 80 (371)
T d1aj8a_ 1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIM 80 (371)
T ss_dssp CCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99777998162686712768988799988769998646999999999977979899999999999997168988999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~p~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~~~~~~~~~~~~~~~p~~~~~~a~~~l~~~ 160 (371)
T d1aj8a_ 81 EALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYML 160 (371)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 86114641267777776410110100124310146788899999999999999999837998879860056899987652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~g~~~~~~~~~~l~~~Lvl~aDHg~n~Stfa~r~vaSt~~d~~~a~~ag~~al~G~~hgga~~~~~~~~~~~~~~~~~~~ 240 (371)
T d1aj8a_ 161 HGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEE 240 (371)
T ss_dssp HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 38878879999999999983677777620656654115775202888888871542011016799999985065420699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pNvd~~~~~l~~~lg~p 320 (371)
T d1aj8a_ 241 WFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP 320 (371)
T ss_dssp HHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCCBCTTTTHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99998624776544472211466606889999887630003568999999999987421798838188999999983998
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~lf~~~R~~G~~AH~~Eq~~~~~l~RP~~~YvG~~~~~~~~i~~r~ 371 (371)
T d1aj8a_ 321 IELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPRLQYVGEIGKKYLPIELRR 371 (371)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEECSCCCBCCCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHCC
T ss_conf 566669999999999999999998679973855401699899987767659
|
| >d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27952.91 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~d~y~~lr~~w~~~~~G~~~~~~~d~~~~~~~~~l~~~a~~~~~~~~~~~~~~~lw~dl~~~~~~~~~~~~~~rL~~mA 80 (371)
T d1n7oa1 1 VKDTYTDRLDDWNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTATYRKLEEMA 80 (371)
T ss_dssp CCSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHSCCSSSCSSSCGGGCCTTSTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96489999999999863745677687899999999999999999872135677777789987775147999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ay~~pgs~lY~d~~l~~~I~~al~~l~~~~y~~~~~~~gNWw~~~Ig~P~~l~~~lill~~~l~~~~~~~~~~~i~~~~ 160 (371)
T d1n7oa1 81 KQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGTPRAINNTLSLMKEYFSDEEIKKYTDVIEKFV 160 (371)
T ss_dssp HHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99859998553699999999999999997089888888898303640758999999988311169999999999999867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG 240 (371)
T d1n7oa1 161 PDPEHFRKTTDNPVKALGGNLVDMGRVKVIAGLLRKDDQEISSTIRSIEQVFKLVDQGEGFYQDGSYIDHTNVAYTGAYG 240 (371)
T ss_dssp CCTTEECTTSSSCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGGSCCSSSSEECTTSCEEETTTEECTTTHH
T ss_pred CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCEECCCCEECCCCEECCCCCH
T ss_conf 88212035677866064116999899999999986799999999999887741102688440377601257622167513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~G~~~d~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~ 320 (371)
T d1n7oa1 241 NVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKSFAPLLVNGELMDMSRGRSISRANSEGHVAAVEVLRGIHRIADMS 320 (371)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCHHHHTHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799888897899999999995433010555015557886225788666414899999999985149
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~iK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~i~~~p~ 371 (371)
T d1n7oa1 321 EGETKQRLQSLVKTIVQSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCGGGGCCSHHHHHHHHHHHHCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999999966875452225345789999999865898898998
|
| >d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus agalactiae [TaxId: 1311]
Probab=100.00 E-value=0 Score=27952.10 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~d~y~~l~~~w~~~~~G~~~~d~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~lw~dl~~~~~s~~~~~~~~rL~~mA~ 80 (371)
T d1f1sa1 1 EDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAK 80 (371)
T ss_dssp CSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSCGGGCCTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97699999999998638766786677899999999999999998612676656667899977752589999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 aY~~pgs~ly~d~~l~~~I~~aL~~l~~~~y~~~~~~~~~~NWW~~eIg~P~~l~~~lill~d~l~~~~~~~~~~~i~~~ 160 (371)
T d1f1sa1 81 QITNPHSTIYKNEKAIRTVKESLAWLHQNFYNVNKDIEGSANWWDFEIGVPRSITGTLSLMNNYFTDAEIKTYTDPIEHF 160 (371)
T ss_dssp HHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCTTSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 98499985547999999999999999983899876688989861123175799999998720015999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSfiqH~~v~Y~G~Y 240 (371)
T d1f1sa1 161 VPDAEYFRKTLVNPFKALGGNLVDMGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSYIDHTNVAYTGAY 240 (371)
T ss_dssp CCCTTEESTTSSCCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCCBSSSSEEBTTSCEEETTTEECTTTH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHCCCCEECCCCC
T ss_conf 78813322567886636522699999999999998289999999999876561103578723047661004670006762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 G~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~g~~~~~v~GR~IsR~~~~~~~~g~~~~~~~~~l~~~ 320 (371)
T d1f1sa1 241 GNVLIDGLTQLLPIIQETDYKISNQELDMVYKWINQSFLPLIVKGELMDMSRGRSISREAASSHAAAVEVLRGFLRLANM 320 (371)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 39999999999999767988888789999999999700456357643565677622478876632799999999987334
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~vK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~I~~~p 371 (371)
T d1f1sa1 321 SNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMNKLLNDSTVATKP 371 (371)
T ss_dssp CCSHHHHHHHHHHHHHHHHCCSSCGGGGCCSHHHHHHHHHHHHCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 989999999999999984587644100645599999999985578888898
|
| >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Trichoderma reesei, Endoglucanase I [TaxId: 51453]
Probab=100.00 E-value=0 Score=27948.50 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 QQ~Gt~t~E~HP~ltwq~CT~~ggCt~~~g~vV~Danwrw~H~~~~~~c~~gn~~~~~lCpd~~tCa~nC~ldgaDY~~~ 80 (371)
T d1eg1a_ 1 EQPGTSTPEVHPKLTTYKCTKSGGCVAQDTSVVLDWNYRWMHDANYNSCTVNGGVNTTLCPDEATCGKNCFIEGVDYAAS 80 (371)
T ss_dssp CEECSSSCCCCCBCCEEEEETTTEEEEECCEEEECGGGSCEECTTCCBSEETTEECTTTCSSSHHHHHHCEECCCCTTTT
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887767548851447515899827723569980573202006986543388655234887566776246557763675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 GVttsG~sltL~~~~~~~~~~~~~vGsRvYLl~~d~~Yqmf~Llg~EftFdVD~S~lpCGlNgALYfveM~adGg~s~~n 160 (371)
T d1eg1a_ 81 GVTTSGSSLTMNQYMPSSSGGYSSVSPRLYLLDSDGEYVMLKLNGQELSFDVDLSALPCGENGSLYLSQMDENGGANQYN 160 (371)
T ss_dssp TEEECSSEEEEESCEECSSSSEECCCCEEEEECTTSSBCCBCCTTSEEEEEECTTSCCTTEEEEEEEECCCTTTTCCSSC
T ss_pred CEEECCCCEEEEEEEECCCCCCCEECCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 26951884789999824766532023327997588837888726971688864478875223366665226568966667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~aGA~YGtGYCDAQCp~~~w~~g~~~~g~~G~CC~EmDIwEANs~A~a~TpH~C~~~~CD~~GC~~NpYR~g~~~fyG~G 240 (371)
T d1eg1a_ 161 TAGANYGSGYCDAQCPVQTWRNGTLNTSHQGFCCNEMDILEGNSRANALTPHSCTATACDSAGCGFNPYGSGYKSYYGPG 240 (371)
T ss_dssp CCGGGGTCCCCCTTCCBCSEETTEECTTCCBCCCCEEEEEEECSSCBCBEEECBCSSCBCSSCCCBCTTTTTCTTTSSTT
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66663675323166873332136677578753035401015454134202434568741888867774555786211489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~tVDT~k~fTVVTQF~t~~~t~~G~LtEIrR~YVQ~GkvI~n~~~~~~~~~~~~~~~~~ggl~~mg~al~rGmVLv~SlW 320 (371)
T d1eg1a_ 241 DTVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGGLATMGKALSSGMVLVFSIW 320 (371)
T ss_dssp SSSCTTSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCSSTTCEEECCCSGGGGGTTTHHHHHHHHHCBEEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEE
T ss_conf 63026897389988665898664434477579997998902776566644454442336889999888608869999979
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
-
T Consensus 321 dd~~~~M~WLDs~~~GpC~~~~g~p~~ve~~~p~a~V~~SNIKfG~I~ST~ 371 (371)
T d1eg1a_ 321 NDNSQYMNWLDSGNAGPCSSTEGNPSNILANNPNTHVVFSNIRWGDIGSTT 371 (371)
T ss_dssp ECTTTTTHHHHBGGGCSBCTTTTCHHHHHHHCTTCEEEEEEEEEESTTTCC
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCC
T ss_conf 279998523058988888888898668623289977998727583787889
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27946.83 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 95789998838999989999999994889899998889978999995588998889999799999999979993999862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 03321100122322110001111111211000002576302544203343311100101112221111111111100013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 240 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 47679998401576431001221111111101124404766747898751233210000147860588641012100000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 14665203654699979999819926787760898628872020676542124622001685065205871245566141
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~~~l~~~ 371 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV 371 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTTCCCC
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCHHHHCCEECC
T ss_conf 255569889999948998656799999189939999698684653587639
|
| >d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase species: Bacillus stearothermophilus, Xt6 [TaxId: 1422]
Probab=100.00 E-value=0 Score=27945.97 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~p~l~~~~~~~f~~G~av~~~~l~~~~~~~~~~~~Fn~~t~eN~mKW~~iep~~G~~n~~~aD~~v~~a~~n 80 (371)
T d1r85a_ 1 KPHISALNAPQLDQRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKAN 80 (371)
T ss_dssp CCCCBGGGSCCHHHHHTTTCEEEEEECGGGGGCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHCCEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99664255664999860578387843755547988999999866900326467634124779925838899999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 gi~vrGH~LvW~~~~P~W~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r 160 (371)
T d1r85a_ 81 GMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLR 160 (371)
T ss_dssp TCEEEEECSCCSTTCCGGGGBCTTSSBGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 99787767786233354101256666444445422333699999999999999999974897528998731106998733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~g~dyi~~af~~A~~~~~p~~~L~~Ndy~~~~~~k~~~~~~~v~~l~~~g~pidgIG~Q~H~~~~~~~~~~i~ 240 (371)
T d1r85a_ 161 NSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIE 240 (371)
T ss_dssp CCHHHHHHTTHHHHHHHHHHHHHHCTTSEEEEEESCTTSTTHHHHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHH
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 37522115858999999999986687546665145644440258999999999977997441433412367998889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~~a~~Gl~i~ITElDV~~~~~~~~~~~~~~~~~~e~~~~QA~~y~~~~~~~~~~~p~v~git~WG~~D~~sW~~~~ 320 (371)
T d1r85a_ 241 KTINMFAALGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSR 320 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEEECSSCSSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHTGGGEEEEEESSSSTTSCGGGGG
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 99999997399237866674167776445766542328999999999999999999638974599986898797446788
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLlfD~~~~pKpAy~ai~d~~ 371 (371)
T d1r85a_ 321 ADVYYDANGNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYWAIIDHK 371 (371)
T ss_dssp CCEEECTTSCEECCTTSCCSEEETTCSCCCCSSBCTTSBBCHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 865435545533222222222235677788734689988977999986349
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27951.82 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 k~~~~~~p~~~~~~~~~v~~~l~~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 1 KEFAYSEPCLDKEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp CCEESCCCCCCHHHHHHHHHHHTSSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 92067899899999999999981898668977999999999997829399982689999999999544579977052013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga 160 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGS 160 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCC
T ss_conf 44332200022058632123332223221012333046200001123445653334532121102220011314441586
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~ 240 (371)
T d2fnua1 161 EYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS 240 (371)
T ss_dssp EETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 01030478643222335566534320154578762122200000012101122322222311256510033145555544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~ 320 (371)
T d2fnua1 241 QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQ 320 (371)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGG
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
T ss_conf 43211210334443310001212223333332233333333333322222221067999999999879984144765112
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------9
Q 001846 864 --------------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 321 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 898884266689989999984959896888889999999999999999748
|
| >d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Peptidylarginine deiminase Pad4, catalytic C-terminal domain domain: Peptidylarginine deiminase Pad4, catalytic C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27877.92 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 APwimtpnt~~p~eV~v~~~~~n~~Fi~~v~~l~~~a~~~l~i~~~~~~~~DrW~QDe~E~GY~qaP~~~~pVvldspR~ 80 (370)
T d2dexx3 1 APWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRN 80 (370)
T ss_dssp CCCBCCCTTSCEEEEEECCCSSCHHHHHHHHHHHHHTTCEEEECCHHHHTTCCCTTTSEEEEEEEETTEEEEEEEECTTC
T ss_pred CCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCC
T ss_conf 98574689998648999861268999999999999729956746524578980300021130342689974558607220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~gl~~fp~~~llg~dfG~~tr~~~~~~v~~lDSfGNLEvsPPvt~~Gk~YPlGRIliG~s~~~~~~gr~m~~~v~dFL~A 160 (370)
T d2dexx3 81 RGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSA 160 (370)
T ss_dssp SGGGGHHHHTTSBTTBEEEECSCSSSCCCGGGSGGGEEECCCEEETTEEETTCCEEEEECSSCCTTCCCCCHHHHHHHHH
T ss_pred CCCHHCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 33011527774178753387348877642023567734479862588426777488547788876545330899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Q~VQ~Pv~L~sdWL~VGHVDEf~~FvPa~~~kgfrlLlAsP~a~~~Ll~~~q~~GhG~a~~f~g~~~~~~~tI~~iL~d~ 240 (370)
T d2dexx3 161 QQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNK 240 (370)
T ss_dssp SGGGCCEEEECTTBSSCCGGGTEEEEECSSGGGEEEEEEEHHHHHHHHHHHHHTTCTTCEETTTCTTSCCEEHHHHHHCH
T ss_pred HCCCCCCEECCCHHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHCCH
T ss_conf 64599802305201057401017876369998538996388999999999987578646504655444221199986387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~l~~~N~~~q~~Id~nr~iLKrELGLte~DIIdiP~LF~~~~~~~A~a~fP~mVNmlVlg~~L~iPkPfGP~inG~c~le 320 (370)
T d2dexx3 241 TLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLE 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCEEECGGGCEEESSCCTTSCEEETTEEEEECCCCCEETTEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEHHH
T ss_conf 78999999998631789999987099867731253440545878621237641666874033067899788488630799
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
=
T Consensus 321 e~v~~lleplGl~c~FiDD~~sYh~~~GeVHcgTNv~R~pf~~kWW~~~p 370 (370)
T d2dexx3 321 EKVCSLLEPLGLQCTFINDFFTYHIRHGEVHAGTNVRRKPFSFKWWNMVP 370 (370)
T ss_dssp HHHHHHHGGGTCEEEEECCTTTTGGGTCCTTTTEEEEECCCSSCGGGCCC
T ss_pred HHHHHHHCCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999745478758995473788861772540464441788866702689
|
| >d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NIF3 (NGG1p interacting factor 3)-like superfamily: NIF3 (NGG1p interacting factor 3)-like family: NIF3 (NGG1p interacting factor 3)-like domain: Nif3-related protein BC4286 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=27876.65 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~p~~~eii~~le~~~P~~lAe~wDnvGL~vg~~~~~V~~I~valD~t~~vi~eAi~~~adlIItHHPl~f~~~k~l~~~~ 80 (370)
T d2gx8a1 1 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDK 80 (370)
T ss_dssp CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTS
T ss_pred CCCHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 99789999999986999671567987379689977649899997699999999997799999979987768964466788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~li~~~I~vys~HTnlD~~~~G~nd~La~~Lgl~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~agag~ 160 (370)
T d2gx8a1 81 AYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGH 160 (370)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHSTTSHHHHHHHHTTCEEEEEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCHHCCCCC
T ss_conf 05699999997897699932402105775799999984897533335555555542389817256666653000037875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~al~~ahpy~~~~~~~~~~~~~~~~~ 240 (370)
T d2gx8a1 161 IGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETL 240 (370)
T ss_dssp BTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSSCCEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf 45632131013676541477788875676785664131430220427778889998887288610133421234655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 G~Grig~l~~p~~l~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA~~ 320 (370)
T d2gx8a1 241 GLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMM 320 (370)
T ss_dssp EEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 76459993786039999999998719982899588887423799973662789999987799899982886799999997
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
|
T Consensus 321 ~gi~lId~GH~sE~~~~~~l~~~L~~~~~~~~~~i~v~~S~~~~dP~~~i 370 (370)
T d2gx8a1 321 LGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV 370 (370)
T ss_dssp HTCEEEECCGGGGGHHHHHHHHHHHHHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEC
T ss_conf 69979978832628999999999999750048856999954778976449
|
| >d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27876.01 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~l~d~~~~~~l~~~a~dwa~~hGl~m~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~neL~~~vS~D 80 (370)
T d2hgsa4 1 TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 80 (370)
T ss_dssp CCSGGGGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTTCCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876588889999999999999997483654688888878345578685577687899999999999999999999737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~fL~~~l~~~~~~D~Ft~~L~~i~~~v~~~g~~q~l~Lgl~RSDYMl~~~~~~~~~~KQVE~NTIS~sfggls~~v~~l 160 (370)
T d2hgsa4 81 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 160 (370)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHH
T ss_conf 99999999877414799999999999999617866259988200654167777665424786112330002176648999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Hr~l~~~~~~~~~~~~~p~n~~~~~la~gla~a~~~y~~~KKvQQ~La~pgvLe~Fl~~~~~~~~~lr~tFa~ly~LD~~ 240 (370)
T d2hgsa4 161 HRHVLSVLSKTKEAGKILSNNPSKGLALGIAKAWELYGSTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVG 240 (370)
T ss_dssp HHHHHHHTTCHHHHTTSCCCCHHHHHHHHHHHHHHHHCCSHHHHHHTTSTTHHHHHSTTCHHHHHHHHHTCCCEEECSSS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999862555421348899717999999999999974466778987498779987089889999999962314506887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~g~~a~~~a~~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~~e~~ayILMerI~P~~~~~~~vr~g~~~~~~~~iS 320 (370)
T d2hgsa4 241 EEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCIS 320 (370)
T ss_dssp HHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTSGGGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEE
T ss_pred CCCHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCC
T ss_conf 45269999767390227755632477651015488999997688676667899974378776865898896022056132
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
|
T Consensus 321 ElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpylv 370 (370)
T d2hgsa4 321 ELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV 370 (370)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred CCCCCEEEEECCCEEEEECCCEEEEECCCCCCCCCCEECCEECCCCCCCC
T ss_conf 22243799957987997165107886278988887810254206686649
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=100.00 E-value=0 Score=27872.70 Aligned_cols=1 Identities=0% Similarity=0.603 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d3coxa1 1 TLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG 80 (370)
T ss_dssp CCCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888899799978478999999999878793999967899887654533221113455443334544445544543456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~ 160 (370)
T d3coxa1 81 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAW 160 (370)
T ss_dssp CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 67656535664445578862156420356555015865524897885223556873788999999999750876444776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i 240 (370)
T d3coxa1 161 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTI 240 (370)
T ss_dssp HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 66788860889999999974986334664345565655444345531224522364443436837877899985898489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL~S~~~~~l~~~s~~vG~~~g~~~~~ 320 (370)
T d3coxa1 241 TTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEGWGVLLNK 320 (370)
T ss_dssp ECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTSCTTTTCCBSSCTTT
T ss_pred EECCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 73673899998499718999999588662322899989999995078885999996789897998877667885664575
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~~~ 370 (370)
T d3coxa1 321 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI 370 (370)
T ss_dssp TSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 55666544687774576334366766768205379998878998875029
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=100.00 E-value=0 Score=27870.66 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~ 80 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY 80 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEE
T ss_pred CCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf 98557615881489999987647999999996999898889999999998789988999589988770678764877702
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iida1 81 ANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGK 160 (370)
T ss_dssp EESSCCCEETTCHHHHHHHHHTTCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHH
T ss_pred ECCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32575563276489999999838763101025786279618852220233322455433320355543467777887877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (370)
T d2iida1 161 VVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKL 240 (370)
T ss_dssp HHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88988742125666530100179999873255577887752100121001467776421001212566655404569999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~ 320 (370)
T d2iida1 241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY 320 (370)
T ss_dssp HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred HHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999864876336864789888099189999964898179990078853898999607048999899999998337863
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a~~~ 370 (370)
T d2iida1 321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 370 (370)
T ss_dssp HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 10234504306668779963201378851099999999999999864249
|
| >d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=27870.29 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~v~ipl~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs 80 (370)
T d3psga_ 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSS 80 (370)
T ss_dssp CEEEEEEECCCHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCC
T ss_pred CEEEECCCCCCHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 98981510735889988728289998761146455305555576464033134687799999986898389999967989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (370)
T d3psga_ 81 NLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAP 160 (370)
T ss_dssp CEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEECEEEEEEEEEEEEECCCCEECCCC
T ss_conf 82897865787332566621787564423679718999578359999999778650101211389999603674021456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~ 240 (370)
T d3psga_ 161 FDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 240 (370)
T ss_dssp CSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEEEEE
T ss_conf 66644545674345688763453554054442226888605888771386378583330341158864135537998724
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~ 320 (370)
T d3psga_ 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYIL 320 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEEECCCCCCEEEECCCCEEECCHHHHHHHHHHHCCEEECCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEEE
T ss_conf 87299677048970179845886275789999999998587260389677744226778619999899999988599399
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a 370 (370)
T d3psga_ 321 QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp ECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECCCEEEEEEEECCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECC
T ss_conf 82992899999744589889719998896667999998999999899649
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27868.89 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d2iw1a1 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPA 80 (370)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 98999148899998999999999999977997999956787788886389986765544301158899999999986165
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iw1a1 81 DRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPER 160 (370)
T ss_dssp SEEEESSCCTTCSEEECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGG
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCE
T ss_conf 52531036723789987622441046630474200040000067889999742157469982479999999860999642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~ 240 (370)
T d2iw1a1 161 FQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRK 240 (370)
T ss_dssp EEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHH
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 89997402222112467656666654304888663699998514554203332011123323322100000112222223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~ 320 (370)
T d2iw1a1 241 FEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEP 320 (370)
T ss_dssp HHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCC
T ss_conf 22222222222222223323344422233334443222234331133214577039993899718885279836998699
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
=
T Consensus 321 ~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~~~~~~~~~~ii~g~ 370 (370)
T d2iw1a1 321 FSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG 370 (370)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 99999999999997699999999999999999828547999999998485
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=0 Score=27868.58 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~ 80 (370)
T d1rh9a1 1 NNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQM 80 (370)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHH
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99679989999999999999999526675011588999999999999998799199979856766765678887546788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 160 (370)
T d1rh9a1 81 FQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVA 160 (370)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCBSSSSSSBHHHHHHHHHHTTCCCCCGGGGGTCHHHHHHHHHHHHHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986999999624443212687555410025777677521124899999999999999998641666765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~v~~~~l~NEp~~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
T d1rh9a1 161 YKDDPTILSWELINEPRCPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQ 240 (370)
T ss_dssp GGGCTTEEEEESCBSCCCTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCCCCCCCGGGGGGSGGGCCCSCCHHHHHTST
T ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 16870365300036666677543688999999999999965899749984221456544656777444565110235688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~D~~~~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (370)
T d1rh9a1 241 GIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAK 320 (370)
T ss_dssp TCCCEEEECCHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHTSCEEEEECCCCTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66088753246765567760245667788999999999757975998453676789988889999999999999999998
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~G~~~W~~~~~~~~~~~dg~g~~~~d~~~t~~~~~~~~~~~~~~~ 370 (370)
T d1rh9a1 321 SGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKLS 370 (370)
T ss_dssp TTCSEEEEEESCBCCTTCGGGCCSCCBCGGGCHHHHHHHHHHHHHHTTCC
T ss_pred HCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 58980899982154788767799845866897228999999999986249
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27869.54 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 p~p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~ 80 (370)
T d1iq0a2 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKY 80 (370)
T ss_dssp CCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99999986999863899998864311361799999999999769979899847976499999999999856153346544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l 160 (370)
T d1iq0a2 81 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALL 160 (370)
T ss_dssp HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHH
T ss_conf 56644324666542788888899999999987666999999999888865411331101012202322364146667666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~ 240 (370)
T d1iq0a2 161 EQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSA 240 (370)
T ss_dssp TTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEE
T ss_pred HHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEC
T ss_conf 52361441246665447983374355566674003685267725862079987601033222110024467663267632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a 320 (370)
T d1iq0a2 241 PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRA 320 (370)
T ss_dssp EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 43443202356788887124047999999999981998034111257899983378534356887458999999999999
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------9
Q 001846 864 -------------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~lsfe 370 (370)
T d1iq0a2 321 RAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE 370 (370)
T ss_dssp HHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCEECHHHHCCCC
T ss_conf 99998508982008999987616632225864589998568789921479
|
| >d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=27799.60 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~tp~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~~~~~ 80 (369)
T d2ewoa1 1 AKRIKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSEL 80 (369)
T ss_dssp CCEECSSCHHHHTCCCCCTTSCEEEEEECCCCCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 98567899301387878872416069998789986303578999999999999985898699998938999999998536
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~i~~~~~~~dD~W~RD~GP~~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~~lvlE 160 (369)
T d2ewoa1 81 GSHNIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLE 160 (369)
T ss_dssp TCCSEEEEECCCSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEEEEECC
T ss_pred CCCCEEEEEECCCCHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 77777999924797566134645898588988998533367765445545522457799999998736543466354875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 GG~ie~dG~GtlltT~~cll~~nRNp~~s~~~ie~~L~~~LGv~~viwL~~g~~~DdTdGHID~~arFi~~~tvl~~~~~ 240 (369)
T d2ewoa1 161 GGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTD 240 (369)
T ss_dssp GGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEEEBCCC
T ss_pred CCCEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 89789889985896445621667899989999999999985994799844766666667773206997289849997148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 d~~~~~y~~~~~~~~~L~~~~d~~G~~~~i~~lp~p~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (369)
T d2ewoa1 241 DKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNGGIILP 320 (369)
T ss_dssp CTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf 87786579999999999987875699753885368975443333455444467664568988654236789999999990
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------9
Q 001846 864 ------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------V 864 (1006)
+
T Consensus 321 ~yg~~~D~~Al~~l~~~fP~r~Vv~i~~~~l~~~gG~iHCiT~q~Pa~~ 369 (369)
T d2ewoa1 321 QYGDENDQLAKQQVQEMFPDRKVVGVRTEEIAYGGGNIHCITQQQPATL 369 (369)
T ss_dssp CCSCTTHHHHHHHHHHHSTTSEEEEECTHHHHTTSCCTTTTCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCEECCCCCCCCC
T ss_conf 1798678999999998888997999844698864975247164536899
|
| >d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Renal dipeptidase domain: Renal dipeptidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27799.37 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~e~A~~lh~~~pViD~H~D~~~~l~~~~~~~~~~~~~~~~~~~~ghvDlprlr~Ggv~~q~faifv~~~~~~~~~~~ 80 (369)
T d1itua_ 1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVR 80 (369)
T ss_dssp CHHHHHHHHHHTTSCEEEEEECHHHHHHHHHTTCTTSGGGCTTTCCSSSCCHHHHHHTTEEEEEEEECCCGGGTTTTHHH
T ss_pred CHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 94789999996489989834328999998733333444344355888865799999669987999998078777759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~al~~id~~~~~~~~~~d~~~~~~s~~di~~a~~~gkiavil~iEg~~~l~~dl~~L~~~y~lGvR~i~Lt~n~~N~~a~ 160 (369)
T d1itua_ 81 RTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWAD 160 (369)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEECCSHHHHHHHHHHTCEEEEEEEECGGGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 99999999999999688768973157899998743672788414345311256799999986495598722687887777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~g~~~~~~~GLt~~G~~~V~emn~lGmiiDlSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNl~De~l~aI 240 (369)
T d1itua_ 161 NWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 (369)
T ss_dssp BGGGGGTSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 75433577876678867678999998641481666487868899988612577456424026654033338998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~~~~l~G~dhVgiGsDfdg~~~~p~gl~~~~~~p~l~~~L~~rG~se~ 320 (369)
T d1itua_ 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEA 320 (369)
T ss_dssp HHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTTSCSCCCBTCSSTTCHHHHHHHHHHTTCCHH
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 96597488850564212330236899999999999870952179865678999998777787788999999998699999
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------9
Q 001846 864 ------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------V 864 (1006)
-
T Consensus 321 ~i~ki~g~N~lRv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
T d1itua_ 321 EVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGSCRTHYGYSS 369 (369)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCCSSSCCCCCCCCGGGCCSSSCCCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 9999998869999999999998613876789984572765441578899
|
| >d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitinase AC species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=0 Score=27797.46 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~d~~~lr~rw~~~l~g~~~~~~~d~~~~~~l~~l~~~a~~~~~~~~~~~~~~~lW~dl~~~~sa~~~~~~~rl~~mA 80 (369)
T d1rwha1 1 PGAAEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAKLDAAAGRTSVFTDLSLAKDAEMVTTYTRLSQLA 80 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCTTCHHHHHHHHHHHHHHHHHHHTBCCCTTCSCSBTTCCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96679999999999997488766657878999999999999999997335677666688887886278999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Ay~~pgs~~y~d~~l~~~I~~al~~l~~~~~~~~~~~~gNWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (369)
T d1rwha1 81 TAWATPTAAVFGDAAVLAAIKAGLADANTLCYNDRKEEVGNWWSWEIGVPRALADAMVLLHAELSAAERTAYCAAIDHFV 160 (369)
T ss_dssp HHHTSTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99819999542699999999999999997188789999999101532858999999998502179899999999999866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 pdp~~~~~~~~~~~~~tGaNrvd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~vt~gdGf~~DgSf~qH~~~~Y~G~YG 240 (369)
T d1rwha1 161 PDPWLQFPPKRGKITSVGANRVDLCQGIIIRSLAGEDPTKLNHAVAGLSQVWQYVTSGDGIFRDGSFIQHSTTPYTGSYG 240 (369)
T ss_dssp SCTTEESCGGGCCEECCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHGGGGGSCBSSSSEEBTTSCEEETTTEECTTTHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEECCCCCH
T ss_conf 78643346667752252009999999999999980899999999998641122245897423477636304442166425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~m~~~v~GR~ISR~~~~~~~~g~~~~~~~~~la~~~ 320 (369)
T d1rwha1 241 VVLLTGLSKLFSLLGGTAFEVSDPTRSIFFDAVEGSFAPVMINGAMADAVRGRSISREANTGYDLGASAIEAILLLARAM 320 (369)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCGGGHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799898887899999999995003462577116667887100788776168999999999998519
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------9
Q 001846 864 ------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~vk~~i~~d~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~ 369 (369)
T d1rwha1 321 DPATAARWRGLCAGWIARDTYRPILNSASVPRTALVKQLEATGVAPVAE 369 (369)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSSCTTTTCCHHHHHHHHHHHHHTCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999999998718765544676522689999986067783889
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=100.00 E-value=0 Score=27795.79 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~g~~P~~l~~~y~~~~~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (369)
T d1ga6a_ 1 AGTAKGHNPTEFPTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEW 80 (369)
T ss_dssp CCBCCCBCGGGHHHHTTCTTSCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCCCEEEEECSCTTSCCCBCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEE
T ss_conf 98887749899999739998889887489999617865678899999986599989977651799888888887721133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ld~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G 160 (369)
T d1ga6a_ 81 DLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG 160 (369)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 24500001015686499999957999865699999999999758986244244322457886168999999999999789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~s~~~ 240 (369)
T d1ga6a_ 161 QTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYE 240 (369)
T ss_dssp CEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEEECTTSCEEEEEECEEEECTTSCEEECCCEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 78998179876557678898766543434665688402333100135777765442021356787755335789866656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~P~~~~~~~~~~~~r~~pdv~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~vAGvvALi~~a~~~~~G~~n~~ly~~~~~ 320 (369)
T d1ga6a_ 241 SKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISS 320 (369)
T ss_dssp ECCGGGGGSTTSCSEEEECSEEEECCGGGCEEEEETTEEEEECSHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 67543334422578852201102467875048726854666578753113899999999863567668768899998864
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------9
Q 001846 864 ------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~~~~di~~g~n~~~~~~~~a~~G~d~~tG~G~~d~~~l~~~~~s~~~ 369 (369)
T d1ga6a_ 321 TPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGWGSLDIAKLSAYIRSNGF 369 (369)
T ss_dssp CGGGEECCCSCBSSSTTCSCBCCSSSBTTTBTCEECHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCC
T ss_conf 7665204445888888887678678988956724379999999986699
|
| >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Hypothetical protein aq 1910 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=27795.29 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~k~~~D~i~g~i~~~~~~~rii~s~~fqRL~~~~Ql~~~~~v~p~a~htR~~HSLgV~~lar~l~~~l~~~~~~~v~~A 80 (369)
T d2heka1 1 MIKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLA 80 (369)
T ss_dssp CEEEEEETTTEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred CCEEEECCCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 95377359988886488999982997670345773478552338999566211998999999999999743328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~LlHDiGh~PFsH~gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~d~ 160 (369)
T d2heka1 81 GLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGS 160 (369)
T ss_dssp HHTTTTTCCSSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCH
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHH
T ss_conf 99860265022204666620345520468998740179999998521236999999863246675204588775265101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Drldyl~rd~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~~~~~~~e~~~~~R~~m~~~vy~h~~~~~~~~~l~~~~~~~ 240 (369)
T d2heka1 161 DRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFHKVVRILSIHLVEFLKKL 240 (369)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 03433344465506767730199998877653400013563499999999999999899955478899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~d~~~~~~l~D~~i~~~L~~~~~~~~~~~~i~~R~l~K~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 320 (369)
T d2heka1 241 ISQEDFTDINNFLRLNDAFVISELFKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEV 320 (369)
T ss_dssp TSSCCCSSTHHHHTCCHHHHHHHHHHCSTTHHHHHHHHSSCCCEEEEEESCHHHHHHHHHHHHHHSCGGGEEEEEEEECS
T ss_pred HHCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86589788999973369999999985802519999998340252020167788899999999987442144401343445
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------9
Q 001846 864 ------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~i~i~~~~~l~~l~~~S~lv~~L~~~~~~riy~~~~v~e~~~~~~~ 369 (369)
T d2heka1 321 YGGNIYVLSSEGLKKAHELSPLIASLKPIKLYRIYVDRQLWEKARSELK 369 (369)
T ss_dssp CCSCCEEEETTEEEEHHHHCHHHHHCCCEEEEEEEECTTTHHHHHHTTC
T ss_pred CCCCEEEECCCCEEEHHHHCHHHHHHHHHHHEEEECCHHHHHHHHHHHC
T ss_conf 6777489639855583563699998688666378889999999998629
|
| >d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27792.08 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 k~~eg~ltvW~~~~~~~~~~~~~~~~fe~~~gv~V~v~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~ 80 (369)
T d1laxa_ 1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 80 (369)
T ss_dssp CCCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 98630899996798316999999999865219879999688799999999866999869998908899999879967588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~dG~~ygiP~~~~~~~~~ynkd~~~~~p~Tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (369)
T d1laxa_ 81 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160 (369)
T ss_dssp CCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCCSSGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCEECCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 44533455468898653489999897510220135775000112110057899876442037875632577764004899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (369)
T d1laxa_ 161 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 240 (369)
T ss_dssp HHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTC
T ss_pred HHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHCCCC
T ss_conf 98717720002355544454455778999999999998752764444552677765515775687416577540011245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (369)
T d1laxa_ 241 NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT 320 (369)
T ss_dssp CEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHHHTTSHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHH
T ss_conf 61376314555677655556435664057855899999999864899999999973898865133200444439489999
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------9
Q 001846 864 ------------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~s~~eal~~~~~~it 369 (369)
T d1laxa_ 321 MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRIT 369 (369)
T ss_dssp HHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 9999608007888568999999999999998399999999999998519
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=27720.46 Aligned_cols=1 Identities=100% Similarity=1.334 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~ 80 (368)
T d2ncda_ 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQS 80 (368)
T ss_dssp CCSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCEEEECCCCEEEECC
T ss_conf 91589999999999999999999999999999999874899756997999990789901027898579957998699706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf 160 (368)
T d2ncda_ 81 IDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 160 (368)
T ss_dssp SCHHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 88655677686466778587999986214999998898775036513773115787560671366644344667999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~ 240 (368)
T d2ncda_ 161 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATA 240 (368)
T ss_dssp HHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 45443202455526899999886560201256421354311302666442334430220477788999999987511244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPy 320 (368)
T d2ncda_ 241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 320 (368)
T ss_dssp SSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC----------CTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 22146545554327899999976698856765444422010233102321024552026499999999998658998997
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
.
T Consensus 321 R~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 321 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp GGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 578889998985599870999999798735499999999999997569
|
| >d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamate-cysteine ligase family 2 (GCS2) domain: Carboxylate-amine ligase YbdK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27719.29 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~f~~~~~~tiGvE~E~~lvd~~~~~~~~~~~~ll~~~~~~~~~~~i~~El~~~qiEl~t~p~~~~~e~~~~l~~~~~~ 80 (368)
T d1r8ga_ 1 LPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKV 80 (368)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEETTTTEECSCCHHHHTTTSSSCSSSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999983489876543679987667757999997222246886310467766998077779999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~~~~~~~g~hv~~~~~d~~~~~~~~~~~~~~~p~l~ 160 (368)
T d1r8ga_ 81 VLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFI 160 (368)
T ss_dssp HHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEECSSHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987655875244575212672215577508999998742707888764256031168999999999999999868998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vRp~~~~~~iEiR~~D 240 (368)
T d1r8ga_ 161 ALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMD 240 (368)
T ss_dssp HHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEE
T ss_pred HHHCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 88528663358677886775267750876565430001120799999998556445677056316876466742124789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~p~~~~~~~~aa~~~~l~~~l~~~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l 320 (368)
T d1r8ga_ 241 TPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSA 320 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 99988999997568887888998617877640448999999998876144411000689967689999999999999999
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
-
T Consensus 321 ~~lg~~~~l~~l~~~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~ 368 (368)
T d1r8ga_ 321 HKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA 368 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 978898999999999982999999999999818999999999998739
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27719.12 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~ 80 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES 80 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG
T ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 97782345467879999999864399889459889998899999999998602568899867899999997525557741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 160 (368)
T d1v2da_ 81 VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNT 160 (368)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEES
T ss_pred EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 26515307888777650444456532358850134567875177320001354345444788999975335765999769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98866666999999999999998498265223333220333333222223344503641455323454322211144223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~ 320 (368)
T d1v2da_ 241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF 320 (368)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHH
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCHHH
T ss_conf 32002221012332233333222222333221025788999999865322456876694786688306999968950899
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
|
T Consensus 321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999969999996233078999899899996499999999999999869
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=27718.92 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~k~ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~ 80 (368)
T d2cu0a1 1 KFVEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGI 80 (368)
T ss_dssp CHHHHHHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCH
T ss_conf 96788998876288000898589776766563653796188314889895798776888999999978996575064898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vI 160 (368)
T d2cu0a1 81 EEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI 160 (368)
T ss_dssp HHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999887433444324101366763799932572778999999983998798437542012456666554121043132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 aGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd 240 (368)
T d2cu0a1 161 VGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGAD 240 (368)
T ss_dssp EEEECCHHHHTTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCS
T ss_pred ECCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEEECCC
T ss_conf 21136799997652276214445675555332112423434789999999875249706845887867721135664132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~ 320 (368)
T d2cu0a1 241 AVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLV 320 (368)
T ss_dssp EEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHH
T ss_pred EEECCCHHCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 35305311142235773671599270135676642211357752223555333444378832885078888899999999
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
=
T Consensus 321 gglrs~m~y~G~~~l~e~~~~~~f~~vt~a~~~E~~~h~~~~~~~~~~ 368 (368)
T d2cu0a1 321 GGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIIITNEAPN 368 (368)
T ss_dssp HHHHHHHHHTTCSBHHHHHHHCCEEECCHHHHHHHSCCSSCCSCCCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf 999999876286509998509789999954142467877366356899
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=27717.71 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~g~a~~~~a~~~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~ 80 (368)
T d1mdah_ 1 EKSKVAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFA 80 (368)
T ss_dssp CCCCCCSHHHHHHHTTCCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEE
T ss_conf 94121200000123445679866645589876126972045788621799708998377888578777513989998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~ 160 (368)
T d1mdah_ 81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160 (368)
T ss_dssp EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred EECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEE
T ss_conf 97556764010356786999989999383064378542102468864058878998999996899859999899893867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 240 (368)
T d1mdah_ 161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240 (368)
T ss_dssp EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCS
T ss_pred EEECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECC
T ss_conf 86046752374699823999948998899982689626665303111356664660101558689993489779996069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a 320 (368)
T d1mdah_ 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEE
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 93699760246543045540127883568871799879998358973340588649999899994868955899651799
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
-
T Consensus 321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~~a 368 (368)
T d1mdah_ 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNEA 368 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCCC
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEECCC
T ss_conf 998999899999489996999989999799998799998789973489
|
| >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27721.27 Aligned_cols=1 Identities=100% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T d1f52a2 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80 (368)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 98879999999999997699870378854288999421035576777565577322456887666887787655577615
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~ 160 (368)
T d1f52a2 81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM 160 (368)
T ss_dssp BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 53001107889999999888622570564223456784322078786577889999999999999997436334741568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~NR~ 240 (368)
T d1f52a2 161 FGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS 240 (368)
T ss_dssp TTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCTT
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 89877532589874159985656555556489999999999986699899977996077652477768743452367655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl~a 320 (368)
T d1f52a2 241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNA 320 (368)
T ss_dssp EEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHHHH
T ss_pred CCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHHHH
T ss_conf 31464025788662478447880177789999999976542421589999777872448976762320151379999999
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
|
T Consensus 321 l~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~~ 368 (368)
T d1f52a2 321 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 368 (368)
T ss_dssp HHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC
T ss_pred HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 964978788765156999999999999999999679999999741689
|
| >d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27715.43 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 Tid~~lQ~~~e~~l~~~~~~~~~~~~~~vv~d~~TG~IlAmas~P~~dpn~~~~~~~~~~~~n~a~~~~~~PGStfKp~~ 80 (368)
T d1pyya4 1 TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMM 80 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESCCCTTTCTTCCTTCCCCCHHHHCCBCCGGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 93979999999999999997089569999999999939999967988854236766103443265517668863054699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~aaaLe~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vtl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~~~ 160 (368)
T d1pyya4 81 LAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGV 160 (368)
T ss_dssp HHHHHHTTCCCTTCEEECCCEEETTEEECCEETTTEECCSCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTS
T ss_pred HHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99864023332222222101102444432345544334880456999997532454143210358244789998753487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~e~~g~~p~~~~~~~~~~~~G~~~~~tplq~a~aya~iANgG~~~~P~~i~~i~d~~g~~~~~~~~~~~~~~i 240 (368)
T d1pyya4 161 PTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPV 240 (368)
T ss_dssp CCCCSCSSCCCCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEEGGGTEEEECCCCEEECCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCC
T ss_conf 42245433233467643320000222346655107888867789854876205579888866876410134432344443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~m~~~v~~~~~~~~~~~gtg~~~~~~~g~~vaGKTGTaq~~~~~~~~~~~~~~~~~~~fvg~~P~~~P~~ 320 (368)
T d1pyya4 241 SKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDF 320 (368)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTEETTTTEESSCCTTSCCEEEEEEEECBCSSSSSBCCSTTCEEEEEEEEESSSSCSE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 27899999999987531145542676046531213799506678822201477788501366565699999957589959
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------9
Q 001846 864 -----------------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------------V 864 (1006)
-
T Consensus 321 ai~V~v~~p~~~~g~~gg~vAapi~~~i~~~~~~l~~~~~~~~~~~~~ 368 (368)
T d1pyya4 321 ILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQTTAKALEQVS 368 (368)
T ss_dssp EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTGGGCTTSCCSTTTTCC
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999778867887306899999999999997743589999724489
|
| >d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alpha-L-arabinofuranosidase, catalytic domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27638.89 Aligned_cols=1 Identities=0% Similarity=-1.589 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~i~~~i~g~f~E~lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~~~ 80 (367)
T d1qw9a2 1 EIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDL 80 (367)
T ss_dssp ECCGGGGEEECCSSTTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEEET
T ss_pred CCCHHHCCCHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98824424406543573207664799998887665999999999639987865886136705212365986778886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~w~~~~~~~~G~~Ef~~~~~~~gaep~~~vn~g~~~~~~a~d~vey~n~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~ 160 (367)
T d1qw9a2 81 AWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMD 160 (367)
T ss_dssp TTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHHHHHHTTCCSCCCCCEEEESSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 88876767777899999999809838999837974099999999997068988889999871887888732899635111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i~lia~g~~~~~~~~~~~w~~~vl~~~~~~iD~is~H~Y~~~~~~~~~~~ 240 (367)
T d1qw9a2 161 GPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTANY 240 (367)
T ss_dssp STTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSCTTSTTTTHHHHHHHHHHGGGCSEEEEEEEECCTTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 56555788999999999999998760299836999868877776555289999861311577022347778875512455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~ 320 (367)
T d1qw9a2 241 LALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITL 320 (367)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55677799999999999999874046778851886224564454555555554233755312237699999999999999
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
=
T Consensus 321 ~R~sD~V~mA~~A~lvNvl~~i~~~~~~~~~~~~~y~v~~~~s~~~r 367 (367)
T d1qw9a2 321 MKHADRVKIACLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR 367 (367)
T ss_dssp HHTTTTEEEEEEECSBSSSCSEEECTTSCEEECTTHHHHHHHHHHCC
T ss_pred HHCCCEEEEEEHHHHHHHHCCEEECCCCCEEECCCHHHHHHHHHHCC
T ss_conf 97259556540337664102148659998610751199999998529
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=100.00 E-value=0 Score=27639.95 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
T d1n4wa1 1 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN 80 (367)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95709996769899999999977959199991689988766565422222344544333334433543321235677766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~ 160 (367)
T d1n4wa1 81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT 160 (367)
T ss_dssp CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66566740223688652135776378873224360006866742232245738899999999998829877888866667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t 240 (367)
T d1n4wa1 161 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLH 240 (367)
T ss_dssp GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 78728899999998738642235323224875555655567631246433445654467667623789758980998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S~~~g~l~~~s~~lG~~~~~~l~~~~~~ 320 (367)
T d1n4wa1 241 QVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGCVLGKATDD 320 (367)
T ss_dssp EEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTCCTTTTCCBSSCTTTTBCT
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 89998985899889999997777752049998648999906523079999847777999986676667865545644456
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
-
T Consensus 321 ~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~~~ 367 (367)
T d1n4wa1 321 YGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 367 (367)
T ss_dssp TSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66435877730347743568687893340799998799999885459
|
| >d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=100.00 E-value=0 Score=27636.88 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 qTIt~w~~~~~~~~~~~~~~~~~F~~~~p~~~v~~~~~~~~~~~~~l~~~~~ag~~pDi~~~~~~~~~~~~~~~g~l~~L 80 (367)
T d1ursa_ 1 QTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPV 80 (367)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCCC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 97999827884579999999999999879989999848828999999999966999839998582789999987995400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~l~yNk~~~~~~p~T~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ursa_ 81 PSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYG 160 (367)
T ss_dssp CTTSCCGGGSCHHHHHTTEETTEECSEEEEEEECEEEEETTTCSSCCCSHHHHHHHHHHHCEECCTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHCEECCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 24554411479778854638877876420354158887401023431008999999866303667777521068887541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~ 240 (367)
T d1ursa_ 161 GYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGV 240 (367)
T ss_dssp CEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEE
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 02211588644543135588889999999999986136564222037788888527741103366665444441156326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
T d1ursa_ 241 TPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFKAFVEQ 320 (367)
T ss_dssp ECCCCCTTSCCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHTSHHHHTCHHHHHHHHH
T ss_pred EECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCHHHHHCHHHHHHHHH
T ss_conf 63365788664310005654010210131688999999850699999999971988873767739553209389999999
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~i~kg 367 (367)
T d1ursa_ 321 LRYAVPMPNIPQMQAVWQAMSILQNIIAGKVSPEQGAKDFVQNIQKG 367 (367)
T ss_dssp GGGCEECCCSTHHHHHHHHTTHHHHHHHTSSCHHHHHHHHHHHHHC-
T ss_pred HHHCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 95083178785489999999999999829899999999999998576
|
| >d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27643.43 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~GL~gv~~~eT~IS~id~~~G~L~YRG~~i~dLa~~~sFEEva~LL~~G~LPt~~el~~f~~~L~~~~~lp~~v~~~ 80 (367)
T d1o7xa_ 1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVLDT 80 (367)
T ss_dssp CBCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97977799837588680386898879998874999861599999999997798969999999999999863581999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~~~p~~~hpm~~l~~~vsal~~~d~~~~~~~~~~~~a~~l~A~~p~i~a~~~r~~~g~~~~~p~~~~s~~~~~~~~~~~ 160 (367)
T d1o7xa_ 81 IYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFA 160 (367)
T ss_dssp HHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98601230146788888998765300234321110167789989999999999876489877885034468887654048
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~l~~~lvl~adHg~n~Stfa~r~~aSt~~d~~~~~~aa~~~l~Gplhgga~~~~~~~l~~~~~~~~~~~~~ 240 (367)
T d1o7xa_ 161 REPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGDPNRVQNWF 240 (367)
T ss_dssp SCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHCSGGGHHHHH
T ss_pred CCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88506777776567400015788854300001451376422114667776045434673799999999633654237899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~pNvd~~~~~l~~~ 320 (367)
T d1o7xa_ 241 NDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYA 320 (367)
T ss_dssp HHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTTCCBCTTTTHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99986147754167875343566228999999999865046512699999999999998534589986838999999998
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
=
T Consensus 321 lG~p~~~~~~lf~~~R~~G~~AH~~Eq~~~~~~l~RP~~~Y~Gp~~~ 367 (367)
T d1o7xa_ 321 LGFPVYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQ 367 (367)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEECSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
T ss_conf 09786778899999999999999999985789841866510098999
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27643.21 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~e~ah~~~~~~~~~~~~~~~~~~~~~~L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~ 80 (367)
T d1d3ga_ 1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY 80 (367)
T ss_dssp CCSCCHHHHHHTHHHHHHHHSCHHHHHHHHHHHHHTTCCC---CCCCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHH
T ss_conf 97770899999999999865898999999999998337553236898777568899866998676848787899999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~ 160 (367)
T d1d3ga_ 81 KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV 160 (367)
T ss_dssp HHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCS
T ss_pred HCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
T ss_conf 35874786134246632457760322102111211224767754699998888875411343436863899834654507
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a 240 (367)
T d1d3ga_ 161 DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp CHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88888877777765314400245000321122210111101257888887653202245776301247641000134467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aG 320 (367)
T d1d3ga_ 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG 320 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 88876543102113332234454344211244321121110230889999999738995199988979999999999839
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
=
T Consensus 321 As~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G~~si~dl~G~a~~~ 367 (367)
T d1d3ga_ 321 ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR 367 (367)
T ss_dssp CSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTCSSHHHHTTGGGGC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCC
T ss_conf 97887417788239079999999999999984999899962802269
|
| >d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerol-3-phosphate (1)-acyltransferase superfamily: Glycerol-3-phosphate (1)-acyltransferase family: Glycerol-3-phosphate (1)-acyltransferase domain: Glycerol-3-phosphate (1)-acyltransferase species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]
Probab=100.00 E-value=0 Score=27643.06 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~e~~~lp~~~~~~~~~~~~~y~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~~p~~ 80 (367)
T d1iuqa_ 1 ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFV 80 (367)
T ss_dssp CCCCCGGGGCCSHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98641322266589999999999855789857999999999999999973489995089999999999888741478743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 f~~~h~~~~~~~~~~~~~~~~~~~li~~~~s~v~~~~~l~~~~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r 160 (367)
T d1iuqa_ 81 FSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAE 160 (367)
T ss_dssp CCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHH
T ss_pred CCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 67521000578778999999999986478777815789999999860799779987885400389999998512656210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~~~~~~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~ 240 (367)
T d1iuqa_ 161 NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 240 (367)
T ss_dssp HCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTT
T ss_pred CEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 33898545562257789999748878995465444563101002233268899999986168759999456764676666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~~~~~~~~ 320 (367)
T d1iuqa_ 241 TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHK 320 (367)
T ss_dssp TCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 66505665575505899999855799956856044133425887543320001036677861488679735666300022
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~e~~ea~~k~l~d~v~eq~~~Lk~ai~gk~~~~~~~p~~~~~qp~ 367 (367)
T d1iuqa_ 321 NPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW 367 (367)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGGCCSSCCEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 63889999999999999999999999985689822258888878999
|
| >d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: DmpA-like domain: L-aminopeptidase D-Ala-esterase/amidase DmpA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27641.79 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 r~r~R~lGi~~~~~pGp~N~ITDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~ 80 (367)
T d1b65a_ 1 KPRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 80 (367)
T ss_dssp CCCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC
T ss_pred CCCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 97567539887888799875014798566223644687654679986711799971899756786055561368876678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~v~e~g~~~~aIvLTggsa~Glaa~~~v~~~l~~~~~g~~~~~~~~vvPiV~~~~D~~l~d~~~~~~~~~~~~~A~~ 160 (367)
T d1b65a_ 81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 160 (367)
T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH
T ss_pred CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 05653547753677987567248888789999999856888777885210451279980677876678988999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGtASr~~~~~~~~~tVGaLV~~N~g~~~~~~~~g~p~g~~l~~~~~~~~~~~~ 240 (367)
T d1b65a_ 161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQER 240 (367)
T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC---
T ss_pred HHHCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 75228877887573211321356787521267887178835999999744788500240775200131445777777889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 nTtI~VVATDApL~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~~~~l~~lf~Aa 320 (367)
T d1b65a_ 241 GSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAA 320 (367)
T ss_dssp -CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEECSGGGHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHH
T ss_conf 98899999598189999999999865315312677779984779994057867766556554441004720008899999
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
-
T Consensus 321 aea~eeAI~nal~~A~t~~G~~~~~~~~~alp~d~~~~~~~~~~~l~ 367 (367)
T d1b65a_ 321 VDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQYGRLA 367 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999974677657589987741799999999999846679
|
| >d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27640.08 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~Y~~~~~lR~~~Pv~~~~~~w~vt~~~di~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (367)
T d1ue8a_ 1 MYDWFKQMRKESPVYYDGKVWNLFKYEDCKMVLNDHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLHDELR 80 (367)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECCHHHHHHHHTCTTTEECCCSSTTTTHHHHHTTCCCCCCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 90899999856998844998998799999999669853537765567542224466432224555552006867875667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~f~~~~l~~~~i~~~~~~ll~~l~~~~d~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ue8a_ 81 NLTADAFNPSNLPVDFVREVTVKLLSELDEEFDVIESFAIPLPILVISKMLGINPDVKKVKDWSDLVALRLGRADEIFSI 160 (367)
T ss_dssp HHHHGGGSGGGSCHHHHHHHHHHHHTTCCSEEEHHHHTTTHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTSSSSSTTTCC
T ss_pred HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 30133478665144999999999986303345316665543444210110464211026778888877620004799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~ag~ett~~~l~~~~~~l~~~~~~~~~~~~~~ 240 (367)
T d1ue8a_ 161 GRKYLELISFSKKELDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVREKGA 240 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999999999986423431012344441347777764133210010111222101023777633000111345556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~ai~E~lR~~p~~~~~~r~~~~~~~l~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~P~R~~~~~l~FG~G~r~C~G~ 320 (367)
T d1ue8a_ 241 LKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRTPNPHLSFGSGIHLCLGA 320 (367)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECSSCEEEECHHHHTTCTTTSSSTTSCCTTCCSCCCCTTCCSTTSCTTH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 77877645205532334432344310221134048754433210035766689722018798999988779987188119
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------9
Q 001846 864 ----------------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------------V 864 (1006)
-
T Consensus 321 ~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~g~~~l~Vr~~r~ 367 (367)
T d1ue8a_ 321 PLARLEARIALEEFAKKFRVKEIVKKEKIDNEVLNGYRKLVVRVERT 367 (367)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEECSCSSBCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999985896634898534587758975236999979
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27568.87 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 80 (366)
T d1hz4a_ 1 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 94430566213999999999999888999999999999854868996799999999999999879999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 87501148999999888788788888999998899999986750341256788899888789998145666689999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 87663002468999988888887646678888999999999987311572699999999999986044898999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76224666777889999999987587999999999999887642667479999999999999878999999999999997
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~in 366 (366)
T d1hz4a_ 321 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 366 (366)
T ss_dssp HHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 6531829999999999999999998659986999999999987559
|
| >d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: double-SIS domain domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27565.85 Aligned_cols=1 Identities=0% Similarity=-2.088 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~m~kEI~eQP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~vG~GsS~~aa~~~~~~~~~~~~~~v 80 (366)
T d1moqa_ 1 GDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 80 (366)
T ss_dssp CCCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999861788999889999999999876368620543103068887308889999822899999999999998439204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~sef~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E~~~~~T 160 (366)
T d1moqa_ 81 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVAST 160 (366)
T ss_dssp EEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCS
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCHHH
T ss_conf 99965445244345699987998620589635899999999749973899989999978986074632356654220000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 k~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~~~g~A~E~ 240 (366)
T d1moqa_ 161 KAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEG 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 57899999999999986442032026778779999998876889987777899899997367526996577758999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 320 (366)
T d1moqa_ 241 ALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHII 320 (366)
T ss_dssp HHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEE
T ss_pred HHHHHHHHHHEEEEECHHHHHCCCHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 99999887674785037776277430230796089846898177999999999997498299996687322445775699
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
=
T Consensus 321 ~~p~~~~~l~pl~~~ip~Qlla~~~A~~~G~~PD~Pr~L~K~vtve 366 (366)
T d1moqa_ 321 EMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 366 (366)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf 6699756787999999999999999998198999999998785319
|
| >d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27563.63 Aligned_cols=1 Identities=0% Similarity=0.603 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~y~~~~~lR~~~Pv~~~~~~w~vt~~~~v~~vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (366)
T d1io7a_ 1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELR 80 (366)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECSHHHHHHHHHCTTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 90899999835998873998999689999999659400336764555554433355432235555550117857888987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~f~~~~l~~~~~~i~~~a~~ll~~~~~~~~D~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (366)
T d1io7a_ 81 SMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGE 160 (366)
T ss_dssp GGGTTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHGGGCTTSCCCTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 76145565130677888899999999873135563210000000122011001687345799999999999764030146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~l~aG~~tt~~~l~~~l~~l~~~~~~~~~~~~~l~ 240 (366)
T d1io7a_ 161 IFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLY 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 78888889887665420222045665542014589999999999999714420377999999874313322233442001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~ee~~r~~~~~~~~~R~~~~d~~i~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~~~~~l~FG~G~r~C~G~ 320 (366)
T d1io7a_ 241 LKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGA 320 (366)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCCSCCCCTTCCGGGSCTTH
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 00046553000234300010210024333436789777332010025611258665418898999988788986488369
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
-
T Consensus 321 ~lA~~e~~~~l~~ll~rf~~~~~~~~~~~~~~~~~~~~~lpVrl~~ 366 (366)
T d1io7a_ 321 PLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKS 366 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECCCSSBCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 9999999999999999779882089865787764787554799969
|
| >d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Allene oxide synthase domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain species: Black sea rod (Plexaura homomalla) [TaxId: 47982]
Probab=100.00 E-value=0 Score=27563.27 Aligned_cols=1 Identities=100% Similarity=0.903 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~HakG~ga~G~f~v~~d 80 (366)
T d1u5ua_ 1 WKNFGFEIFGEKYGQEELEKRIKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITIVND 80 (366)
T ss_dssp CCCCHHHHHHHHHCHHHHHHHHHHHTSCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTSCSSSCSEEEEEEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 97620778877632577664000457899874223475431189999999865411468756654775645999998079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~f~~G~~~Pv~vRfS~~~G~~D~~~d~RG~AiKf~~~~ge~~~D~v~~n~pvF~~rd~~~F~~~~~a~k~~p~ 160 (366)
T d1u5ua_ 81 PKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAA 160 (366)
T ss_dssp CCSCCCSSSCTTCEEEEEEEEEBSSCSCTTSEECBEEEEESSSSSSCCSCEEEEEESSSCSCCSHHHHHHHTTCCTTHHH
T ss_pred CHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 01655876179975679999258888865567877369987658987325786337774304798886888860587637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~f~~~~Pe~~~~~~~~~r~~P~s~~~~~y~s~~tf~fvn~~G~~~yvK~~~~P~~~~~~~~~e~~~~~~~~~~~~~~~~ 240 (366)
T d1u5ua_ 161 EEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS 240 (366)
T ss_dssp HHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEESSSCCCGGGCTTCCCHHHHTTTTCCS
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHCCC
T ss_conf 89987098999999985577999834475002261787847898899999998457776642444323722344321246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~d~Lr~dl~~~l~~g~~~~~l~vQl~~~~d~d~~~i~D~Tk~Wpe~~~P~~~vG~ltl~~~~~~~e~EqlaF 320 (366)
T d1u5ua_ 241 RHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAF 320 (366)
T ss_dssp CCTTCCSCTTHHHHHHHHHHHHSCEEEEEEEEEEECCTTCCGGGGCTTSCCCTTTSCCEEEEEEEEEEECCHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
T ss_conf 54102576377899999998679954999999546354789998887516886567637879999799897057576524
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
|
T Consensus 321 ~P~~~~pgi~~~~~~~~~d~~si~~~R~~vY~~s~~~R~~~~~~~~ 366 (366)
T d1u5ua_ 321 NIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLKIGSLV 366 (366)
T ss_dssp CTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8755699837778522243442888999999999998754501569
|
| >d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=27562.85 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~w~d~~r~i~v~aNi~~~~d~~~a~~~GAdGIGL~RtEflfl~~~~~p~~~e~i~~~~~~~~~~~l~ 80 (366)
T d1h6za1 1 RSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGSRINFIREMILADSASGRKAALD 80 (366)
T ss_dssp CCSCSTTHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHTTTCCSEEECBCSGGGSTTTHHHHHHHHHSCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 98987458999999875378669997089999999999759984503887998618987882898763235577999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 k~~~~~~~~y~~i~~a~~~~pV~iRtlD~g~dk~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~E~NP~LG~RGiR~~L~ 160 (366)
T d1h6za1 81 KLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNALHELNPMLGHRGCRLGIT 160 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCEEEECCCSCGGGGCCSSCSSTTTTSCSSSCCHHHHHHHHHSSCCSSSTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC
T ss_conf 87788999999999970899879996224322357850555543111003543555532025557884123456655414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~p~lf~~QlrAilrA~~~~~~~g~~~~l~iMiP~v~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iG~MiEvPsaal~~ 240 (366)
T d1h6za1 161 YPEIYNMQVRAIIEAAIAVSEEGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGKRVHYTVGTMIEVPRAAVTA 240 (366)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTTCCCCEEEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCSCCCCEEEEEECSHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf 80667999999999999987528865401221206679999989999989999887504876441367641213899869
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 d~~a~~vDF~SIGTNDLtQy~la~dR~n~~v~~~~~~~~~~~~~~p~~~~~~~av~~lI~~a~~~~r~~~~~i~vsiCGE 320 (366)
T d1h6za1 241 DSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQEGIGELVRIAVTKGRRVKPMLKMGICGE 320 (366)
T ss_dssp HHHTTTCSEEEECTTHHHHHHHTCCGGGCHHHHTTTTTTCSSSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEECSG
T ss_pred HHHHHHCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99863050899601046567765301551134567765200010556606699999999999998775189981997064
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
=
T Consensus 321 ~a~dp~~~~~Li~lGi~~lSvsp~~ip~vk~a~a~~~~~~~r~~~~ 366 (366)
T d1h6za1 321 HGGDPATIGFCHKVGLDYVSCSPFRVPVAIVAAAHASIKDRRAAMK 366 (366)
T ss_dssp GGGCHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0239999999998699979989277699999999854998787459
|
| >d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Cellulomonas fimi [TaxId: 1708]
Probab=100.00 E-value=0 Score=27562.46 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 t~~lvd~~At~~t~~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~ 80 (366)
T d2bvya2 1 TIAIVDADATAETRSLLSYLDGVRGEGILFGHQHTTSFGLTTGPTDGTTSDVKNVTGDFPAVFGWDTLIIEGNERPGLAE 80 (366)
T ss_dssp CBCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTSCSSSCSCCSSCCHHHHHHSSCBSEEEEETTTTTTSSTTCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 96665888799999999999985489879986146444666687426799999976888776443114567874433223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~Ggivt~~wH~~nP~~g~~~~~~~~~~~~~vlpg~~~~~~~~~~l~~ia~~a~~Lk~~~~~ 160 (366)
T d2bvya2 81 NTRDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVAYLDDIAELADASRRDDGT 160 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTTSCCTTCCTTCHHHHHSTTSTTHHHHHHHHHHHHHHHHHCBCTTSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67311489999999976306997899971377888986557741689873689970689999999999999998750478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~VPVl~Rp~HE~nG~WfwWg~~~~~p~~y~~lwr~~~d~l~~~~g~~Nliwvwsp~~~~~~~~~~~~~~YPGDdyVDivG 240 (366)
T d2bvya2 161 LIPIVFRPWHENAGSWFWWGAAYGSPGEYQELYRFTVEYLRDVKGVSNFLYAWGPGGGFGGNRDVYLRTYPGDAFVDVLG 240 (366)
T ss_dssp BCCEEEECSTTTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHHTSCCCSEEEEECCCSCCTTCHHHHGGGCCCTTTCSEEC
T ss_pred CCCEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEE
T ss_conf 86089831220379855057889998999999999999999725876169986168778865211665288987478988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~l~~~~~~a~~~~Kp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~~~~~~~~y~~~W~n 320 (366)
T d2bvya2 241 LDTYDSTGSDAFLAGLVADLRMIAEIADEKGKVSAFTEFGVSGGVGTNGSSPAQWFTKVLAAIKADPVASRNAYMETWAN 320 (366)
T ss_dssp CEEEESSCCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEETTCSSTTSCCCTTHHHHHHHHHHHSTTTTCCSEEEECCC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 74457888752278999999999999873699579942002578644678742589999999873721001048988548
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~p~~g~~s~~dF~~~~~dp~~~f~~~l~~~y~~~~~~~~ 366 (366)
T d2bvya2 321 FDAGQHFVPVPGDALLEDFQAYAADPFTLFASEVTGAFDRTVAAAP 366 (366)
T ss_dssp CSSSSCSSCCTTCTTHHHHHHHHHSTTEEBGGGCCSTTCCCCCBCC
T ss_pred CCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCC
T ss_conf 9988761236997469999999759566542227032147666797
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27561.14 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~f~~P~~~~~G~gal~~l~~~l~~~g~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~ 80 (366)
T d1jq5a_ 1 AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANI 80 (366)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99858958963999039999999999974994899989857899999999999877996999981899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~D~IiavGGGs~iD~aK~iA~~~~~p~i~IPTT~gtgse~t~~avi~~~~~~~~~~~~~~~~P~~vi~Dp~l~~t 160 (366)
T d1jq5a_ 81 ARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIAN 160 (366)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHTCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHT
T ss_pred HHCCCCCEEEEECCCCCCCCHHEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHH
T ss_conf 62038868998168864422000120466535402434434320013212323567422110114557789998610432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 lP~~~~~sg~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (366)
T d1jq5a_ 161 APPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL 240 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32788898677788899999998860654323034479999999999999987468876667635658999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~g~~~~~~~~~~~H~i~h~l~~~~g~~~~~~HG~~va~g~~~~~~l~~~~~~~~~~~~~l~~~lglP~~L~dlgi~~~~ 320 (366)
T d1jq5a_ 241 LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDAS 320 (366)
T ss_dssp HHHHHHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCCSTTTTTCTTCC
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCC
T ss_conf 60433467876645211012676237764767633779999999998428899999999999986999999994989777
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~l~~ia~~a~~~~~~~~nP~~~t~edi~~il~~a~~~~~~~~~~ 366 (366)
T d1jq5a_ 321 REDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEK 366 (366)
T ss_dssp HHHHHHHHHHHTSTTCGGGGTCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999840874147999999999999999999999987209
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=27559.16 Aligned_cols=1 Identities=100% Similarity=1.002 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~r~~~~~~~~~~~i~~~g~~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a 80 (366)
T d2aeua1 1 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTSTTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 96366788899985633330275432688888864889999998438245689999999987068984479996889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia 160 (366)
T d2aeua1 81 ILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA 160 (366)
T ss_dssp HHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99999983899979994699862419988976288677799999999736877607999945888867879999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~ 240 (366)
T d2aeua1 161 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIY 240 (366)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 00817899956721432364468987662861787136444545521589706778999999972235568779899888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV 320 (366)
T d2aeua1 241 RALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGI 320 (366)
T ss_dssp HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHCCE
T ss_conf 89986049999999999999999988604111133566667543457630110477760102456879999999981988
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------9
Q 001846 864 ---------------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------------V 864 (1006)
-
T Consensus 321 ~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~~~~~ 366 (366)
T d2aeua1 321 ITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS 366 (366)
T ss_dssp ECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9997898889998799951655411089999999999999998459
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=0 Score=27493.16 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~k~~r~~l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~ 80 (365)
T d1zfja1 1 SNWDTKFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSIT 80 (365)
T ss_dssp CGGGGSSCCCCCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHH
T ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 97211223026880108985787776776726237964895268988978988768889999999779916974866789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e 160 (365)
T d1zfja1 81 EQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAE 160 (365)
T ss_dssp HHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHH
T ss_conf 98877665443037569999944681277899999986998899978865543214788999865887644411343489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~ 240 (365)
T d1zfja1 161 GARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS 240 (365)
T ss_dssp HHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf 99999866976378640256445676301342242138999999997579569805884762066655321587898642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~ 320 (365)
T d1zfja1 241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSG 320 (365)
T ss_dssp TTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 21046678974797778475552775557555456644434455443221224684478546787789999999999998
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
|
T Consensus 321 m~y~G~~~l~e~~~~~~fv~vt~~~~~E~~~h~~~~~~~~~~y~~ 365 (365)
T d1zfja1 321 MGYVGAGDIQELHENAQFVEMSGAGLIESHPHDVQITNEAPNYSV 365 (365)
T ss_dssp HHHTTCSSHHHHHHHCCEEECCHHHHHHHSCCSSCCSSCBTTBC-
T ss_pred HHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 762487749999629889999922010258862577157899869
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27491.16 Aligned_cols=1 Identities=0% Similarity=-0.991 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa 80 (365)
T d1w85a_ 1 TFQFPFAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEA 80 (365)
T ss_dssp CCCCCHHHHHHHHHHTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 98797433321022139769999999999885457999999999999999999999999999997799656008898699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~ 160 (365)
T d1w85a_ 81 SQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGK 160 (365)
T ss_dssp HHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCTTCCBCCCCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCEEEECCCCHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999986797687631366112255569999999986279988667888755605533357666412567765643046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~ 240 (365)
T d1w85a_ 161 KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYA 240 (365)
T ss_dssp SCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf 88146631677643126888887764336674379997024333322202133211111012357617981440687999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~ 320 (365)
T d1w85a_ 241 AVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE 320 (365)
T ss_dssp HHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999997423796179974134356667868863124774789998848989999999998799999999999999999
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 eV~~A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~~~ 365 (365)
T d1w85a_ 321 EIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 365 (365)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999868998989998453238998899999999887469
|
| >d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Outer capsid protein sigma 3 superfamily: Outer capsid protein sigma 3 family: Outer capsid protein sigma 3 domain: Outer capsid protein sigma 3 species: Reovirus [TaxId: 10891]
Probab=100.00 E-value=0 Score=27494.99 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 MEVRlPNfHSvVE~I~nSYe~rp~~yst~egWd~~~f~~PDVIkVG~AYCCaQCCGVLGapp~~~~~FPHHrCHQq~~R~ 80 (365)
T d1fn9a_ 1 MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQ 80 (365)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTCCCEEBTTTBTCCSSCCCCSEEEETTEEEETTTTEEEEEGGGTCCSCCCCCCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 96446771149999998874577644520131454314876599867587400154336786678607613676776404
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 dtPLLrfvgRvTaH~KRgmLd~~a~~~~~i~D~~~e~~~rv~~egg~lvE~~~~~lD~~s~~~SI~sdWT~PLe~~~dlD 160 (365)
T d1fn9a_ 81 DYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLD 160 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCCEEEECCGGGSSTTSTTTCTTCCTTSCCCCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf 75577655578887765279999999999873077776676636886331333421606653334304677201014420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 tr~D~~~tal~~MIDsSdl~pnf~mrdpshafngvkl~gdarqt~fsrtf~~rsslewgvmvydysele~dp~kgr~yr~ 240 (365)
T d1fn9a_ 161 TKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRK 240 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESSEESCTHHHHTTSCBCGGGGGCCCCSSCCTTSCCCCCCEEECCHHHHHCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCCCCHHHH
T ss_conf 35789999888600165305332415833322662005740002000025776631444799765663368544502355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 elvtpardfghfglshysrattp~lgkmpavfsgmltgnckmyp~i~gtak~kt~~kl~~avn~~wgvekirya~gpgg~ 320 (365)
T d1fn9a_ 241 ELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGM 320 (365)
T ss_dssp HHTSTHHHHCCGGGCCCCEEECCCSTTCCEEECCGGGTSCCEEECCCHHHHHGGGHHHHHHHHHHSCHHHHHHHHCTTHH
T ss_pred HHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 53673021364441000223671002562565310147621431023620024378899987745403420221168863
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 tgwy~rtmqqapivltpa~ltmfpdt~kfgd~~~pvmigdpmi~g 365 (365)
T d1fn9a_ 321 TGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG 365 (365)
T ss_dssp HHHHHHHHHHHHHHTSCGGGGCCCSSCSSCSSSSCEEECCCEEEC
T ss_pred CHHHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 324443453088673468850277742135667863317864369
|
| >d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27492.01 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 Mns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtG~PI~ 80 (365)
T d1um0a_ 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCCE
T ss_conf 98764422788515578884489992408688858999999986679999998766899982799027368826577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~~~v~~IG~i 160 (365)
T d1um0a_ 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI 160 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEETTE
T ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 55414656751456664257777761111100785367888618899999999999999988875471589999944544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~kLda~LA~A~mSI 240 (365)
T d1um0a_ 161 KAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGL 240 (365)
T ss_dssp ECSSCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 45431011202444036872667888999999985188768668999855643444786557876421236999877425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 pAvKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~pq~Tvd~~~~e~~~~~~ 320 (365)
T d1um0a_ 241 NGVKAVEIGKGVESSLLKGSEYNDLMDQKGFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLK 320 (365)
T ss_dssp TTEEEEEETTGGGGGGSBHHHHCCCEETTEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEEBTTSCEEEECCC
T ss_pred CCEEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEEC
T ss_conf 33235641454666652576506732478874567785105767887669999957875567755435779987776016
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 gRhDpCivprA~~V~EAm~alvlaD~~L~~~~~~~~~~k~~~~~~ 365 (365)
T d1um0a_ 321 GRHDPCIAIRGSVVCESLLALVLADMVLLNLTSKIEYLKTIYNEN 365 (365)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSBHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988970726528999999999999999997563599999874179
|
| >d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein transglycosylase A, MLTA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=27491.17 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 f~l~pvsf~~LPGW~~Dd~~~al~Af~~SC~~l~~~~~~~~~~~~~t~~~~~~~c~~a~~~~~~~~~~aR~Ffe~~F~py 80 (365)
T d2pnwa1 1 FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPF 80 (365)
T ss_dssp CEEEECCGGGSTTGGGCCCTTHHHHHHHHHHHHTSSCCCCCCTTCCCHHHHHHHHHHHHHCCCCSHHHHHHHHHHHEEEE
T ss_pred CCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEE
T ss_conf 96337188778894112499999999999998721785545666778999999999998535699899999999718899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~~~~~~~Gl~TGYYEP~l~gS~~~~~~y~~PlY~~P~dLv~vdl~~f~~~l~~~~~~gR~~~~~~~py~~R~~I~~g~ 160 (365)
T d2pnwa1 81 RISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGC 160 (365)
T ss_dssp EEEC----CEEEEEEEECEEEEESSCCSSSCEEEEBCCTTEEECCTTTCCTTCCTTCCEEEEETTEEECCCCHHHHHTTT
T ss_pred EECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCC
T ss_conf 94048987536898667767000378988987744689531006622255434665302443168766777445554465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~~g~elaw~~d~vd~fflqIQGSgrv~l~dG~~~rv~yag~NG~pY~sigr~Li~~G~i~~~~~sm~~ir~wl~~nP~ 240 (365)
T d2pnwa1 161 LRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPD 240 (365)
T ss_dssp TTTSSCEEEEESCHHHHHHHHHHTEEEEECTTSCEEEEEEEEECSCCCCCHHHHHHHTTCSCTTTCCHHHHHHHHHHCGG
T ss_pred CCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCHH
T ss_conf 46778623673685777886303617999089998999871678986505679998768878210799999999997969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~ll~~N~syvFFr~~~~~~~~~Gp~Ga~gvpLtp~rSiAvD~~~~plG~p~~l~~~~~~~~~~~~~~~rl~~aqDTG 320 (365)
T d2pnwa1 241 EVDGVLWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTG 320 (365)
T ss_dssp GHHHHHTTCCCCEEEEEC-------CCBCTTSSBCCTTTEEECCTTTCCTTCEEEEEETTCCTTTTTSCEEEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99999860997599887788776789756137120125035405542578865999656777689987100669997446
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 gAIkG~~R~D~f~G~G~~A~~~Ag~~~~~g~~~~Llpk~~~~r~~ 365 (365)
T d2pnwa1 321 SAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR 365 (365)
T ss_dssp TTCCSTTEEEEEEEESHHHHHHHHTCEEEEEEEEEEEHHHHGGGC
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEECCHHHHCC
T ss_conf 523689726997408889998860768744799998734354439
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=100.00 E-value=0 Score=27487.72 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~L~~~i~~~i~~~G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~ 80 (365)
T d1zkda1 1 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT 80 (365)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 97207899999999956985599999997079986344789978899886788734799999999999999997177766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~~~~~~g~iiaNE~fDA 160 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDV 160 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSCCSSEEEEEESSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEEECCCCCC
T ss_conf 16995188611788866554123311355405898435456778898874166540111474243558759993255755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 lPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~G~~l~i 240 (365)
T d1zkda1 161 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII 240 (365)
T ss_dssp SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 00128997475421322232255204776310212467763033443147886323565899998765666405653433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 DYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL~~~GI~~~~~~l~~~~~ 320 (365)
T d1zkda1 241 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKAT 320 (365)
T ss_dssp EEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 10045554444203344443366213898753265118899999987458615234358999997889999999975399
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~Li~p~~~~MGe~FKVl~~~~~~~~~~~gf~~~ 365 (365)
T d1zkda1 321 PQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD 365 (365)
T ss_dssp HHHHHHHHHHHHHHHCEETTEETTTEEEEEEECTTCCCCTTTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCHHEEEEEEECCCCCCCCCCCCC
T ss_conf 889999999999726988100211279999817999988898999
|
| >d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Fe-only hydrogenase superfamily: Fe-only hydrogenase family: Fe-only hydrogenase domain: Fe-only hydrogenase, catalytic domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=27485.53 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~ 80 (365)
T d3c8ya1 1 HMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN 80 (365)
T ss_dssp CHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97899999968995899998927899999984899430028999999998699999983788899999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~P~isS~CPg~V~yiEk~~PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~e~~~ 160 (365)
T d3c8ya1 81 NGPFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEK 160 (365)
T ss_dssp TCSCCEECCCCHHHHHHHHHHCGGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEE
T ss_pred CCCCCEEEECCHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCC
T ss_conf 89987598479899999999675653325678888999999999987876099911289999834643224542821245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~sGG~~~~~~~~~~~~~~~~~~~~~~~~~~r 240 (365)
T d3c8ya1 161 DGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVR 240 (365)
T ss_dssp TTEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTSTTHHHHHHHHHHHHHHHTCCCSCCCCGGGC
T ss_pred CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 78987488953999999999759992238886668766777866512123663999999998774368865552024306
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~~~i~~~~~~~~~~~~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgGCinGgGq~~~~~~~~~~~~~~~~r~~~ 320 (365)
T d3c8ya1 241 GLNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASV 320 (365)
T ss_dssp SSCSEEEEEEEETTEEEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHHHHHHSCHHHHHHHH
T ss_pred CCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87751899997089178999960299999999987459999728998068998707998688896013268999999998
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~ 365 (365)
T d3c8ya1 321 LYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 365 (365)
T ss_dssp HHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf 875430377788855999999999986799838999972687029
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=100.00 E-value=0 Score=27482.65 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (365)
T d1jofa_ 1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCEEEEEEEC
T ss_conf 91199999314999899999858889389845445168999777999489899999938947899990899769876412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 89986789987899879999932799789986745788742068664033004764675568898115978889999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 82079987999970688716652511112788740899988998669995158998999995598753778731240245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCC
T ss_conf 56556665444435776316998999978997135787542279999856887144676766777679986478964899
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~~~~~~w~~ 365 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECC
T ss_conf 999999967999499999828867278999889999976879639
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27488.35 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~lpTT~VGS~PRp~eLk~a~e~~~~G~is~eel~~~~~~ai~~~v 80 (365)
T d1u1ha2 1 EGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVV 80 (365)
T ss_dssp THHHHHTTTTSSCCCSSSCCHHHHHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96899988089865267983789999999847999986232477889989999999976699999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~Q~~aGidiItDGE~~r~d~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~~k 160 (365)
T d1u1ha2 81 DLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 160 (365)
T ss_dssp HHHHTTCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSHHHHHHHTTSCSSCBE
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99998479967639813035999999752670000464157469711066041475446676408999998850122234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~i~gp~~l~~~~~~~~y~~~~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~n~~~ 240 (365)
T d1u1ha2 161 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITN 240 (365)
T ss_dssp EEEECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 45550368853126668899899999999999999999996699389957628764321242159999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVVd~r~~~~E~~e~v~~ri 320 (365)
T d1u1ha2 241 CGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRV 320 (365)
T ss_dssp TTSCTTSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCSCTTSSSCCCHHHHHHHH
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 43566655899732655412478885477420001103586278887775288998899888827999879999999999
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------9
Q 001846 864 --------------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------------V 864 (1006)
=
T Consensus 321 ~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~vr~e 365 (365)
T d1u1ha2 321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQ 365 (365)
T ss_dssp HHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999973885539981888999799899999999999999999659
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=27408.50 Aligned_cols=1 Identities=0% Similarity=0.603 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~ripsl~~~~~~~g~~~a~~~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~ 80 (364)
T d1w0pa3 1 VIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPI 80 (364)
T ss_dssp EEECTTCEEEEEEECSSSTTCEEEEEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 93468973547989807899899999623378998655896459999937897589998883158877786534577699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 160 (364)
T d1w0pa3 81 YDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAI 160 (364)
T ss_dssp EETTTTEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 97999969999975178877566455355448579986579998512352146420003505797120351992999788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~~~~~~~~~~~ 240 (364)
T d1w0pa3 161 VLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQF 240 (364)
T ss_dssp EESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETTEECCSEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 50578885037885168857886455676665334544345788722699965865678998157865577688975999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G~TW~~~~~l 320 (364)
T d1w0pa3 241 LSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQL 320 (364)
T ss_dssp EESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTTSCCEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 97589842235546753335776788632014776057896389996787876577860125999984799679997497
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
-
T Consensus 321 ~~g~~~Ys~~~~~~~g~~~~~ye~~~~~i~~~~~~~~~l~~~~~ 364 (364)
T d1w0pa3 321 VNGASAYSDIYQLDSENAIVIVETDNSNMRILRMPITLLKQKLT 364 (364)
T ss_dssp CSSBCCSEEEEECSSSEEEEEEECGGGCEEEEEEEHHHHGGGTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEHHHHHCCCC
T ss_conf 28997787327928998999999499838999987999521059
|
| >d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 8, HDAC8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27415.27 Aligned_cols=1 Identities=200% Similarity=2.463 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~pvyiy~~~~~~~~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~~~~ 80 (364)
T d1t64a_ 1 LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDS 80 (364)
T ss_dssp CCCEEECCHHHHHHHTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCCTTT
T ss_pred CCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98869969888416799898829999999999974996688896889799899998299999999998604026444112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~ 160 (364)
T d1t64a_ 81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL 160 (364)
T ss_dssp TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf 01067888887703999999985028999999875986500345754464333444454555689999999985103079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~ 240 (364)
T d1t64a_ 161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ 240 (364)
T ss_dssp EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98523577776044420687544533345567778898873105876445632334125565738999999976678862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~ 320 (364)
T d1t64a_ 241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320 (364)
T ss_dssp HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 57998899989714778997778727998999999999835998799979888878999999999999859988866898
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~~ 364 (364)
T d1t64a_ 321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 364 (364)
T ss_dssp CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 50155409973136686656566999999999999999987429
|
| >d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=27411.41 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~tP~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~~ 80 (364)
T d2jera1 1 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPE 80 (364)
T ss_dssp CCBCCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 98456899111387748995500328997689985204677999999999999985887399997928999999757566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 v~~~~~~~dD~W~RD~GPi~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~~lvlEGG~i 160 (364)
T d2jera1 81 ITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSF 160 (364)
T ss_dssp SEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEECCGGGE
T ss_pred EEEEECCCCCHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCE
T ss_conf 49999368875764551389991677567633664687655555555410278999999998366544665737748966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il~~~~~d~~~ 240 (364)
T d2jera1 161 HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNS 240 (364)
T ss_dssp EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTS
T ss_pred EECCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCC
T ss_conf 97799639975455514578999899999999999869863677658755677777754448994799569984388878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP~fg~ 320 (364)
T d2jera1 241 PFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGD 320 (364)
T ss_dssp TTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCC
T ss_conf 35799999999997656534898558862689742333333344534575435689886202578999999999902798
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
=
T Consensus 321 ~~D~~Al~~l~~~fP~r~Vv~I~~~~i~~~gG~iHCiT~q~P~~ 364 (364)
T d2jera1 321 ENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHXITQQEPKR 364 (364)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEECHHHHTTTCCTGGGCEEEECC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCHHHHCCCCC
T ss_conf 77899999999888899799971089875698014463127999
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=100.00 E-value=0 Score=27410.91 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~pLFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~ 80 (364)
T d1icpa_ 1 QVDKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQ 80 (364)
T ss_dssp CCCCCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCEECHHHH
T ss_conf 99898899972489999678427524489858999797999999999983964999710788873357999853134344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 i~~~k~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 160 (364)
T d1icpa_ 81 VEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEF 160 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 45677888886237882577640477554554445788875323456531112346565678887311066799999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~ 240 (364)
T d1icpa_ 161 RVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEA 240 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999999839986898305762131200110077675444204320167898765420124886466886043224677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~ 320 (364)
T d1icpa_ 241 GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAY 320 (364)
T ss_dssp CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEHH
T ss_conf 67516777889987752032245665158655455455447889999986478789978989999999998699765056
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
-
T Consensus 321 gR~~iadPd~~~k~~~g~pi~~~~~~~~~~~~~~~g~~~~p~~~ 364 (364)
T d1icpa_ 321 GRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 364 (364)
T ss_dssp SHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCSSTTTTCSCCCC
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 79999790499999709998988611342799998848798889
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27410.43 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~m~~~~~~P~rii~G~gal~~l~~~l~~~g~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~v~~~~~~~~~i~~~~~~~ 80 (364)
T d1kq3a_ 1 HMITTTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLV 80 (364)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTC
T ss_pred CCCCCEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 99755778978798059999999999973993899989865564799999998886698699618989807999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~D~IIavGGGs~~D~aK~ia~~~~~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~~~~~~~P~~viiDp~l~~t~P 160 (364)
T d1kq3a_ 81 EEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAP 160 (364)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHHTTCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHHSC
T ss_pred HCCCCEEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHH
T ss_conf 20576899813675410101223334210124225433332446513786326775311200244533887716666435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 240 (364)
T d1kq3a_ 161 ARFLVAGMGDALATWFEAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLS 240 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCBCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88886217888653777765554214001015555568999999999999988887777640337999999999877875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~~~~~~~~~~~H~~~~~~~~~~~~~~~~HG~~va~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~elGi~~~~~~~ 320 (364)
T d1kq3a_ 241 GLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDED 320 (364)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHH
T ss_conf 34213445566520002254523764202107899889999875406799999999999985999989992999998999
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
+
T Consensus 321 l~~ia~~a~~~~~~~~~~P~~~t~edi~~il~~A~~~~~~~~~~ 364 (364)
T d1kq3a_ 321 LMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGRMRKNL 364 (364)
T ss_dssp HHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998727775658996899999999999999998875579
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=0 Score=27410.42 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~a 80 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFA 80 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 96999992789936622589875996799758735789985477788564999998999998999999996698503552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 YGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~ 160 (364)
T d1sdma_ 81 YGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV 160 (364)
T ss_dssp ECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 23478776201656766551367899998865531034655369999888723632233576545554433133146760
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~ 240 (364)
T d1sdma_ 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS 240 (364)
T ss_dssp EEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---
T ss_pred CCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCCCCCCC
T ss_conf 20353000117788978986406600044534354103336359999999703676503567998404100352001466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak 320 (364)
T d1sdma_ 241 AGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVR 320 (364)
T ss_dssp ------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 67502332335643206899999997499757730112138878634999509999996987001899999999999984
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
=
T Consensus 321 ~i~n~p~~n~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~e 364 (364)
T d1sdma_ 321 SIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364 (364)
T ss_dssp TCCCCCCCCEECHHHHHHHTTTTCC-----------CCEECCCC
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 20667835579899999999999999998744027799997559
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27409.99 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvG 80 (364)
T d1um8a_ 1 LLSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG 80 (364)
T ss_dssp CCSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSS
T ss_pred CCCCCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 97779887999999589623808999999999998998887788764044443311112233456787532441899863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 KTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~ 160 (364)
T d1um8a_ 81 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 160 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78999999864435331112220144316676312103445420245899865463010166653134544555512214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d1um8a_ 161 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 240 (364)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 38898645540586122587778767764168996113455411131014566543014454310001100124666530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~G 320 (364)
T d1um8a_ 241 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG 320 (364)
T ss_dssp GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCC
T ss_conf 24578776530079999872301557402099999999879999999999998757927999899999999956587778
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
-
T Consensus 321 AR~L~riie~~l~~~~f~~p~~~~~~v~I~~~~V~~~~~~~~i~ 364 (364)
T d1um8a_ 321 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 364 (364)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCEEEC
T ss_conf 36789999999999855587789999997778867998881439
|
| >d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=27408.69 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~waD~~r~~~v~aN~~~~~d~~~A~~~GAdGIGL~RTEflfl~~~~~p~~~~~~~~~~~e~~~~ 80 (364)
T d1kbla1 1 IETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSDSVEAREE 80 (364)
T ss_dssp CCEECCCCCHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHTTCCSEEEECCTHHHHSHHHHHHHHHHHHCCSHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 99768887448999999877467107998289999999999769971548888998727876540566663367266799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~q~~~y~~i~~~~~g~pvtiRtlD~g~dk~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~E~NP~LG~RGiR~ 160 (364)
T d1kbla1 81 ALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNMGLTLAEVKAKVDELHEFNPMMGHRGCRL 160 (364)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTCCEEEECCCSCGGGGSCCSHHHHHHHHHHHTCCHHHHHHHHHHHCCSCGGGSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99998887877899999860898679851568864467873156899998739987887665424455784224433213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~~p~lf~~QlrAilrA~~~~~~~~g~~~~~~Im~Pmv~~~~E~~~~k~~i~~~~~~l~~~~~~~~~~~iG~MiE~Psa 240 (364)
T d1kbla1 161 AVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRA 240 (364)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf 42665236888999999999978843875431441131304999999998888899997530387766148775011599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 al~~d~~~~~vDF~SIGTNDLtQy~la~dRd~~~~~l~~y~~~~i~~~dP~~~~~~~av~~lI~~~~~~~~~~~~~i~vs 320 (364)
T d1kbla1 241 ALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCG 320 (364)
T ss_dssp HHTHHHHTTTCSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 97189987327679963306878887433253255665554420022375104406999999999999999737998699
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
=
T Consensus 321 iCGE~asdp~~~~~L~~lGi~~lS~sp~~vp~~r~a~aqa~~~~ 364 (364)
T d1kbla1 321 ICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNN 364 (364)
T ss_dssp ECSGGGGSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 71731159999999998699989978046699999999987439
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27408.64 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~ 80 (364)
T d1omwa3 1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD 80 (364)
T ss_dssp CCSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred CCHHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf 97776851018842889099999999999799999984587542667999999999999985089985889999999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~ 160 (364)
T d1omwa3 81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 160 (364)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECEEEECCCC
T ss_conf 88999991489838999873255327899999999999999999779622044422167858896798220102333788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li 240 (364)
T d1omwa3 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL 240 (364)
T ss_dssp CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 64331134554216876038999844104677899999985999888899899999998604688878877899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d1omwa3 241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQEL 320 (364)
T ss_dssp HHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--------------------CCCCSSSSGG
T ss_pred HHHCCCCHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
T ss_conf 99856698880887435799997491023789879962889959379988888687454665881011379889757899
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~q~~~ 364 (364)
T d1omwa3 321 YRNFPLTISERWQQEVAETVFDTINAETDRLEARKKTKNKQLGH 364 (364)
T ss_dssp GTTCCEECHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf 84687657637788888876644526578888642271633389
|
| >d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola insolens, Cel6a [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Humicola insolens, Cel6a [TaxId: 34413]
Probab=100.00 E-value=0 Score=27408.12 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~p~~gNPf~g~~~yvnP~~~~~v~~~a~~~~~d~~~~a~~~~va~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 80 (364)
T d1oc7a_ 1 APYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQ 80 (364)
T ss_dssp CCCCSCTTTTCEECCCHHHHHHHHHTTGGGCCCHHHHHHHHHHTTSCCCEEECSGGGTTTHHHHHHHHHHHHHHTTCSSC
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99789988898332474077899999873468988999999985378279711477777522778999999987214788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~lVvY~iP~RDC~a~as~Ge~~~~~~g~~~y~~Yid~I~~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~ 160 (364)
T d1oc7a_ 81 YAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAAST 160 (364)
T ss_dssp EEEEEEECCCTTCSTTSSSCCCCCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECTTSTHHHHHCTTSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 51389994799987320004897545766468899999999999975688634999777622223306880666778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~i~yAi~~l~~pnv~vYlDaGhsgWLgw~~n~~~~a~~~a~~l~~ag~~~~vrGFatNvsNy~~~~~~~~~~~~~~n 240 (364)
T d1oc7a_ 161 YRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPN 240 (364)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEECCCTTTTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTCCCCSSCSSCCGGGTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997169973899978877666760001268999999998647864343378704477666667887544578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~dE~~y~~~l~~~l~~~G~~~~fvIDTsRNG~gp~~~~~~g~WCN~~GaglG~rPt~~t~~~~vDA~lWIKpPGESDG 320 (364)
T d1oc7a_ 241 PNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECNG 320 (364)
T ss_dssp SCCSHHHHHHHHHHHHHHTTCCCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 76259999999999997458887448870467889877778888779999826889978999877677887588847788
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
.
T Consensus 321 ~~~~~~~~~D~~C~~~~a~~~aP~AG~Wf~~~f~~Lv~NA~P~f 364 (364)
T d1oc7a_ 321 TSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 364 (364)
T ss_dssp CCCTTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 88876666676667655789998677752999999997268999
|
| >d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase 10c species: Cellvibrio japonicus [TaxId: 155077]
Probab=100.00 E-value=0 Score=27407.39 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~l~~~~~~~f~~G~av~~~~~~~~~~~~~~~~~~~~~~~fn~~t~eN~mKW~~iep~~G~~nf~~~D~~v~~a 80 (364)
T d1us3a2 1 AYSANVDHLRDLAPSDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAFVDWA 80 (364)
T ss_dssp CCCCCCSCGGGGCSSSCCEEEEEBCTTCTTTBTTTCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 97564358999703689478885276555422246778999999768823165467768855889836838999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~gi~v~GH~lvW~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~ 160 (364)
T d1us3a2 81 TENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAF 160 (364)
T ss_dssp HHTTCEEEEEEEEECCGGGSCHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHH
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 98889899950687865578643235786579999999999999987524688357999860444578876556666437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~g~~~~~i~~Af~~Ar~~~p~a~l~~ndy~~~~~~~~~~~~~~~v~~l~~~g~~idgiG~Q~H~~~~~p~~~~i~~~ 240 (364)
T d1us3a2 161 YVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAA 240 (364)
T ss_dssp HHHTTSCSHHHHHHHHHHHHHCTTSEEEEEESSTTSCSHHHHHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 77708833999999999998640343211565334663134678999999986899655532410025799998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~~~~~~g~~I~iTEldi~~~~~~~~~~~~~~~~~~~~~~~~~QA~~~~~~~~~~~~~~~~~~~~~vt~Wg~~D~~sW~~ 320 (364)
T d1us3a2 241 MKKVVDLGLLVKITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLD 320 (364)
T ss_dssp HHHHHTTTCEEEEEEEEEESSCTTSTTTTTTCCCSCCHHHHHHHHHHHHHHHHHHHHHSCGGGEEEEEESCSBGGGCHHH
T ss_pred HHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 99998549905887404741467665444444688875899999999999999998455623455699815874876556
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~lL~d~d~~pKPAy~av~~~L~g~~~~~~~ 364 (364)
T d1us3a2 321 GLYREQFEDEKISWPLLFDNNYNDKPALRGFADALIGTQCTNTH 364 (364)
T ss_dssp HHTTTTTTTCCCCCCSSBCTTSCBCHHHHHHHHHHHTCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 87777666666687866889989988999999997799887889
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=27404.55 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~n~~~~~~~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~ 80 (364)
T d2e7ja1 1 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMH 80 (364)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 97566841027968999999999984477510034666411135708999999999998695979997969999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~ 160 (364)
T d2e7ja1 81 SLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 160 (364)
T ss_dssp HHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCH
T ss_conf 98679967974046431110688851211798630356433257999976655410467716999605779984552311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d2e7ja1 161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC 240 (364)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred HHEECCCCCCCHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 00000023321111144323444320133332213530331012788888999988799999985156657663333310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d2e7ja1 241 TARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 320 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf 03235799999999988999999987777788999999975986457888876559983541477789753256677988
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------9
Q 001846 864 -------------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------------V 864 (1006)
-
T Consensus 321 l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys 364 (364)
T d2e7ja1 321 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS 364 (364)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 87658713457876269980567999999999999999999759
|
| >d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27341.52 Aligned_cols=1 Identities=0% Similarity=-2.088 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~s~~e~l~~eA~~Fi~~~y~e~~~~~~~~~Rl~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V~D~ 80 (363)
T d1m7va_ 1 GSHMEILWNEAKAFIAECYQELGKEEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDR 80 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCSCGGGGGGCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 97678999999999999998648632489999999999974177438999998878998714552323002275725656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 R~v~t~~~m~eal~~Hl~~AtN~G~Ir~~ITVF~p~~~~~~~~RIwN~QLirYAGY~~dg~iiGDP~~vefT~~c~~lGW 160 (363)
T d1m7va_ 81 RDVRTKEDVRDALFHHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASRSLTAACEQLGW 160 (363)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHGGGSCCCEEEECCCCSSSCCSEEECCSBSSCBCEEC--CCCEECGGGHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 68999899999999999997079987623898078778999865644888866175889983689526899999997599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~t~FDvLPlviq~~g~~~P~~feiP~~lvlEV~i~HP~~~~f~~LgLkWyavP~iS~M~L~iGGi~y~aaPFNGWYM 240 (363)
T d1m7va_ 161 RGERTDFDLLPLIFRMRGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYM 240 (363)
T ss_dssp CCCCCTTCBCCEEEEETTCSSCEEECCCTTTCCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCEEECCCHHHEEEECCCCCCCHHHHHCCCCEEECHHHCCCHHHCCCEEECCCCCCCCEE
T ss_conf 99899888403899967999981331887783675157989755776698632032332240310888542456343422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~TEIgaRnl~D~~RYn~L~~VA~~mGlDt~~~~sLWkDrAlvElN~AVLhSF~~~gVtivDHHtas~~F~~f~~~E~~~~ 320 (363)
T d1m7va_ 241 GTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQALVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAG 320 (363)
T ss_dssp HHHHHTTTTTCTTTTCCHHHHHHHTTCCCSCGGGTHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHHHHHHHHHTT
T ss_pred EHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 00230244555777774799999948888997215778899999999999999879647052788999999999999818
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
=
T Consensus 321 r~~~gdW~WlvPP~S~s~tpvfH~~~~~~~~~Pnf~yq~~pw~ 363 (363)
T d1m7va_ 321 RKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363 (363)
T ss_dssp CCCBCCHHHHSCSSSGGGSGGGGSCCBCCCCSSEEECCCCTTC
T ss_pred CCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999984377788864344277776544445887502788899
|
| >d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27339.81 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 WLAEHMlIlgvt~P~g~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv~~vGDDiawi~~~~dG~l~AiNPE~G~FGVapgt 80 (363)
T d1khba1 1 WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGT 80 (363)
T ss_dssp CEEESCEEEEEECTTSCEEEEEEECCTTSCHHHHHTCCCCSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTC
T ss_pred CHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 92352343032489997799987567443421088718899996778941746777787889678536655753447898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~tnp~am~~l~~~~IFTNValt~DG~vwWeG~~~~~~~~~~~~~w~g~~~~~~~~~paaHpNsRFt~p~~qcp~id~~ 160 (363)
T d1khba1 81 SVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAA 160 (363)
T ss_dssp CTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTT
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98889999997536852443567789974678898889877524678899888888997778875202137669866843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~g~~g~vrrdPmAMlpF~gyn~gdY~~hWL~ 240 (363)
T d1khba1 161 WESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS 240 (363)
T ss_dssp TTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEEC--------CCEEECGGGCTTTCSSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 35987514778997565688887248731466607873210104567764146864318066543328898999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~A~eTPIG~vP~~~dLd~~GL~~~~~~el~~ 320 (363)
T d1khba1 241 MAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFS 320 (363)
T ss_dssp GGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--CEEEETTEEEECTTCSCCTTCCCCCHHHHTC
T ss_pred HHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHC
T ss_conf 51246567984799976534588886578863156999999998649755201676312683446866788666999838
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
+
T Consensus 321 vd~~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~m 363 (363)
T d1khba1 321 ISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 363 (363)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999999998733305099999999999999649
|
| >d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
Probab=100.00 E-value=0 Score=27339.36 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGilAADeS~gT~~Krl~~igventeenr~~yR~~lftsp~f~~~~IsGvILfe 80 (363)
T d1zaia1 1 PHSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFH 80 (363)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999980589869982689983777898769999778999999987148512205446897648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLd~L~~rl~~y~~~Ga~faKwRsVi~i~~~~ps~ 160 (363)
T d1zaia1 81 ETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSA 160 (363)
T ss_dssp HHHTCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCSSSCSCH
T ss_pred HHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 87511225998622566515854467347653336788644135662239999999986686513112102235677740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~v~~~l~~~~V~leg~lLKpnMv~~g~~~~ 240 (363)
T d1zaia1 161 LAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACT 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 24899899999999999865842002353442476315788999999999999876412323467501355666754355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamNk~~~~~pW~lsfSfgRALQ~~~lk~W~g~~~n~ 320 (363)
T d1zaia1 241 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENL 320 (363)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCTTSCEEEECCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESHHHHHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCH
T ss_conf 54886675566555654058977772110578765889999999986036899976999751766489999847882258
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
-
T Consensus 321 ~aaQ~~~~~ra~~Ns~A~~G~y~~~~e~~~~~~~~l~v~~~~y 363 (363)
T d1zaia1 321 KAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY 363 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSSSCCCCCCCCCCSCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999985468765850787776754455520067659
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=27335.29 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~e~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~ 80 (363)
T d1vyra_ 1 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIA 80 (363)
T ss_dssp CCSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHH
T ss_pred CCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCC
T ss_conf 95047983689989788738763468767798998989999999997086979981268885335799987437735503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 160 (363)
T d1vyra_ 81 AWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVN 160 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20033445652697046644126765454436787630101223555555344766664557877764566777999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~ 240 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 240 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf 99999999997513403451467103111446766566654464033444767888765553047887412311323311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~ 320 (363)
T d1vyra_ 241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA 320 (363)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred CHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCEEH
T ss_conf 10001330688999999877429806620347766786532888999898658539966899999999999879965115
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
+
T Consensus 321 ~gR~liadP~~~~K~~~g~~~~~~~~~~~~~~~~~~y~~y~~~ 363 (363)
T d1vyra_ 321 FGRDYIANPDLVARLQKKAELNPQRPESFYGGGAEGYTDYPSL 363 (363)
T ss_dssp ESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCSCCC
T ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 5499987921999998389999998754237999985789898
|
| >d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27335.24 Aligned_cols=1 Identities=100% Similarity=2.064 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 M~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~e~i~~~dail~Gaig~P~ 80 (363)
T d1cnza_ 1 MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPK 80 (363)
T ss_dssp CCCCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99986699989888559999999999999866619706999996428799974996889999999850413772257878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~~~~~ 160 (363)
T d1cnza_ 81 WENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK 160 (363)
T ss_dssp GTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCEE
T ss_conf 65543456644006799999738825777776125655323576554679842899874135433576531316885203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (363)
T d1cnza_ 161 AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred ECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 32237764899999999999999966995689813753304487899999986228874975176658999986455777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~~a~fEp~HGsapdiaGk~~aNP~a~Ils~ammL~~~lg~~~~A~ 320 (363)
T d1cnza_ 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAAT 320 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 66642357777678899887504542111034036407851677765334798864909999999999984189879999
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
|
T Consensus 321 ~i~~Av~~~l~~g~~T~Dl~~~~~~~~T~e~~dai~~~l~~~~ 363 (363)
T d1cnza_ 321 AIEQAINRALEEGVRTGDLARGAAAVSTDEMGDIIARYVAEGV 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCGGGTTTTTCCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999769967564689974899999999999987019
|
| >d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glutaminase/Asparaginase superfamily: Glutaminase/Asparaginase family: Glutaminase/Asparaginase domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27334.69 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~lPkI~ii~TGGTIa~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~~~~~~dS~~~~~~~~~ 80 (363)
T d1zq1a2 1 KPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDMKPKHWV 80 (363)
T ss_dssp CCCCCCCSSCCCCTTCCEEEEEECSCCCCEEEETTTTEEEECCCHHHHHHHCGGGGGTSEEEEEECCCCCGGGCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCEEEEEEECCCCCHHCCHHHHH
T ss_conf 98644345688999999799997787314046687783378799999998575455125267999633896247999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~~i~~~~~~~d~G~VvtHGTDTl~eTA~~L~~~l~~~~kPVVlTGa~~P~~~~~sDg~~NL~~Al~~A~~~~~~v~v 160 (363)
T d1zq1a2 81 KIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMV 160 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEE
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999998632777737983587739999999999724899638996334135677751077899999998565666326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~i~~a~~v~K~~t~~~~aF~sp~~~pLg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~pG 240 (363)
T d1zq1a2 161 VMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPG 240 (363)
T ss_dssp EEESSSSSSCEEEEETTSEEECBSSCSTTEEECSSCCSEEECTTSCEEESCSCCCBCCCCCCEECCCCCCCEEEEECCTT
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 75200143145532131012345655444468776744899738879862454468887534554245785799993699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~l~~~~~~g~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~~GvI~~gdlt~ 320 (363)
T d1zq1a2 241 ISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLP 320 (363)
T ss_dssp CCTHHHHHHHHTTCSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHHTTCEECTTCCH
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCEEECCCCCH
T ss_conf 99999999985798369998555888856788999999747926999368787885777654437788699898899899
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
-
T Consensus 321 ekArikLm~lL~~~~~~~eI~~~f~~nl~GE~t~~~~~~~~~~ 363 (363)
T d1zq1a2 321 ETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHSCSSTTSCSSCBTTCSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999859999999999971366853688766666569
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27333.06 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 1 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp CCTTCCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 92231356737878987999788878999999999978298999968985211342356727993515589899876148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76731023322222222222222222221246777767751752202446654235554456554554346677689888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~ 240 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf 78999999999999999984997899982157616876432222221100000113345543438998578874002778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~~t 320 (363)
T d2c5aa1 241 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRIT 320 (363)
T ss_dssp HHHHHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999985788882797168765389999999998689875476899998641455889999986999788999999999
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
-
T Consensus 321 i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (363)
T d2c5aa1 321 YFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADG 363 (363)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGGSCCCCCCCCCCCTTCCCCSCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 9999998876541454432145331110105312476233789
|
| >d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: CelA cellulase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=0 Score=27332.38 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~p~~~~~~~~~~~~~~~qa~~~~~~~~~w~~~k~~~~~~~~~~~~~rv~d~~~~~~~t~SEGQgYGMl~Av~~~d~~~ 80 (363)
T d1kwfa_ 1 AGVPFNTKYPYGPTSIADNQSEVTAMLKAEWEDWKSKRITSNGAGGYKRVQRDASTNYDTVSQGMGYGLLLAVCFNEQAL 80 (363)
T ss_dssp CCSSCCCCCSSSCSCSSSCHHHHHHHHHHHHHHHHHHHEECTTSTTSCEECCCGGGTTCEEHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99887788888766778757899999999999999998066798872488717988987312789999999998499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Fd~l~~wt~~~l~~~~L~aW~~~~~~~~~~~~~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~Y~~~A~~ii~~i~~~~v 160 (363)
T d1kwfa_ 81 FDDLYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHCV 160 (363)
T ss_dssp HHHHHHHHHTTBCTTSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999974566888536778999877677888989768999999999999774874088999999999999998510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~l~pg~~~~~~~~~npSY~~p~~~~~fa~~~~~~~W~~v~~~s~~ll~~~~~~~~~tGL~pDw~~~~~~p~~~~~ 240 (363)
T d1kwfa_ 161 EHGSYVLKPGDRWGGSSVTNPSYFAPAWYKVYAQYTGDTRWNQVADKCYQIVEEVKKYNNGTGLVPDWCTASGTPASGQS 240 (363)
T ss_dssp CTTTCCBCSBSSSCBTTBBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTTTSTTSCCCCSSBCTTSSCCTTSC
T ss_pred CCCCCEECCCCCCCCCCEECHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78984553676568988558032359999999963687338999999999999976405888888400046888588898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~ydA~Rvp~~ia~d~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~G~~~~~~~~~~f~A~~~~~~~~~~~~~~ 320 (363)
T d1kwfa_ 241 YDYKYDATRYGWRTAVDYSWFGDQRAKANCDMLTKFFARDGAKGIVDGYTIQGSKISNNHNASFIGPVAAASMTGYDLNF 320 (363)
T ss_dssp CSBSTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCGGGCCSCBCTTSCBCCCCCCTTTHHHHHHHHTTSSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 87565599999999998750157145899999999998459888750481698446888979899999999873588589
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~~sG~~~~p~~~~ 363 (363)
T d1kwfa_ 321 AKELYRETVAVKDSEYYGYYGNSLRLLTLLYITGNFPNPLSDL 363 (363)
T ss_dssp HHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHTTCCCCTTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999987522467777887899999999999749989887679
|
| >d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes family: D-aminoacid aminotransferase-like PLP-dependent enzymes domain: Branched-chain aminoacid aminotransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=27331.80 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d~m~~~~~~~~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~ 80 (363)
T d2a1ha1 1 SSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80 (363)
T ss_dssp CCCCGGGCEECCCSSCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCEECCCHHHCCCCCEEEEEEEEEE
T ss_conf 97542115999767998898972237777755651799992288300887868412610720111304424353689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~~~ 160 (363)
T d2a1ha1 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRAL 160 (363)
T ss_dssp CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEE
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 79997899735788777888889757999876899999999998777526654465379997622677644566776662
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~~G~de~l~L~~~dg~v~E~~~sN 240 (363)
T d2a1ha1 161 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMN 240 (363)
T ss_dssp EEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEE
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEE
T ss_conf 14897603456750013644689751011467545534214556422226888761489501100013451489616607
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 iF~v~~~kdG~~~l~tppl~~~ILpGITR~~Viela~~~g~i~V~Er~i~~~eL~~A~~~~~~dEvF~tgTa~~I~PV~~ 320 (363)
T d2a1ha1 241 IFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 320 (363)
T ss_dssp EEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEEE
T ss_conf 99998358885799723654334674489999999997399820664779999996765599618998478858999999
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
|
T Consensus 321 I~~~~~~~~i~~g~~g~~it~~L~~~l~~iq~G~~~~~W~~~v 363 (363)
T d2a1ha1 321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHEWMFPV 363 (363)
T ss_dssp EEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSCCTTEEEC
T ss_pred EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 9867964893899808899999999999976788899973579
|
| >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Hypothetical protein YteR domain: Hypothetical protein YteR species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27331.64 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~W~W~~G~~~~gl~~lye~Tgd~~y~~~a~~~~~~~~~~~g~~~~~~~~~d~~ 80 (363)
T d1nc5a_ 1 KSPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAI 80 (363)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTSSSTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHBCTTCCBCCCTTCGGGT
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 97579999999999973665348999982775649999999999883999999999999999844478745778987415
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~l~~ly~~Tgd~~y~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~d~a~~ 160 (363)
T d1nc5a_ 81 QAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVL 160 (363)
T ss_dssp GGGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 88999999998728688999999999862137878878631367887773642067748999999998698789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~l~d~~~gL~~h~~~~~~~~~~~~~~~~~~~~~WsRGngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~ 240 (363)
T d1nc5a_ 161 QESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSI 240 (363)
T ss_dssp HHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999997515889986525455676677788888786501100019999879999867777800999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~q~~d~G~w~~~~d~p~~~~~~~etSata~~~y~l~~g~~~g~l~~~y~~~~~ka~~~l~~~~~~~~~~g~~~v~~~~ 320 (363)
T d1nc5a_ 241 CRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDIC 320 (363)
T ss_dssp HTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 84558878662310567777898633589999999999998758444999999999999999987403899874650357
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
=
T Consensus 321 ~g~~~~~~~~y~~~~~~~~~~~G~g~fllA~~e~~~l~~~~~~ 363 (363)
T d1nc5a_ 321 VGTSAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK 363 (363)
T ss_dssp CSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899998200126787578757799999999999999984289
|
| >d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]
Probab=100.00 E-value=0 Score=27331.48 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 p~~~~~l~~~v~~~i~~~~~~~~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~~ta~~i~~L~e~G 80 (363)
T d1onha_ 1 PVSEKQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARG 80 (363)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 98979999999999999998389986999999999999995876006779889999978720559999999999998669
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~lddpv~~ylp~~~~~~~~~ITi~~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~i 160 (363)
T d1onha_ 81 EISLDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGAL 160 (363)
T ss_dssp SCCTTSBGGGTCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHH
T ss_conf 62242021011100244434555065676530467544586455788999999987554148740231256410013555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ie~~tg~~~~~~~~e~i~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l 240 (363)
T d1onha_ 161 AVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEEAHYAWGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVMANM 240 (363)
T ss_dssp HTGGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCCSSTTHHHHHCCEECHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 56404997004457888861696421446870014652136665974541011024445656614417999999999860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~G~ 320 (363)
T d1onha_ 241 APENVADASLKQGIALAQSRYWRIGSMYQGLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGS 320 (363)
T ss_dssp CGGGCCSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCHHHHHHHHSHHHHTSCEECEEEEEEECCCSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 68877716788888775321045787566655020366655554445777542113444445677777778747972365
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------9
Q 001846 864 ------------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------------V 864 (1006)
=
T Consensus 321 ~~G~~s~~~~~P~~~~~ivvl~N~~~~~~~~~~~a~~i~~al~ 363 (363)
T d1onha_ 321 TGGFGSYVAFIPEKQIGIVMLANTSYPNPARVEAAYHILEALQ 363 (363)
T ss_dssp CSSCEEEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7875299999977997999997489998899999999999639
|
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Polypeptide chain release factor 2 (RF2) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27267.13 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91689999999999999997769798999999999986397144499999999999999999999999999999988877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Ela~ee~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~ 160 (362)
T d1gqea_ 81 LELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 160 (362)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 87764110588888899999998622467787521367545454379998257606688999999999999999759858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~ 240 (362)
T d1gqea_ 161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDV 240 (362)
T ss_dssp EEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEE
T ss_pred EEECCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEE
T ss_conf 99414567766546999999776688999872375048884046777347998778899624787631111767827997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i 320 (362)
T d1gqea_ 241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI 320 (362)
T ss_dssp ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred EECCCCCCCCHHHHHCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 52699886512033141688744733677764221014789999999999999999999999999887423127576984
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
+
T Consensus 321 RtY~~~~~rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~~ 362 (362)
T d1gqea_ 321 RSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362 (362)
T ss_dssp EEEEGGGTEEEETTTCCEESCHHHHHTTCCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCCC
T ss_conf 676589981500053972578468758877999999987779
|
| >d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Sulfolobus fructose-1,6-bisphosphatase-like superfamily: Sulfolobus fructose-1,6-bisphosphatase-like family: Sulfolobus fructose-1,6-bisphosphatase-like domain: ST0318 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27266.25 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 k~TvSvIKADVGg~~GHt~~hp~ll~~a~~~l~~a~~~glliD~~v~~~GDDi~limTH~~G~d~~eiH~lAW~aF~~~t 80 (362)
T d1umga_ 1 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAA 80 (362)
T ss_dssp CEEEEEEEECCCBBTTTTBCCHHHHHHHHHHHHHHHHTTSCSEEEEEEETTEEEEEEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94699997236787777768989999999999861138868877667643742578754689894899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~vAK~l~LYGAGQDLL~DaFSGNvkGmGPgvAEmEf~ERpsEp~~vF~aDKTePGAfNlPlY~~FaDPfnt~GLvidp~m 160 (362)
T d1umga_ 81 KVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTM 160 (362)
T ss_dssp HHHHHTTCBTTTTTTCTTSSSSSCCCCCCEEEEEEECCCSSCEEEEEEEESBCGGGGHHHHHHHHHCTTTCTHHHHCGGG
T ss_pred HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 99887256556621211346765257787437887225789857999853888760120689984284578750317101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 h~Gf~FeV~Dv~~~k~i~l~~Pee~Ydllalig~~~RyvI~~V~~k~~~eiaav~St~RL~~iAG~YvGKDDPV~iVR~Q 240 (362)
T d1umga_ 161 HGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQ 240 (362)
T ss_dssp TTCEEEEEEETTTTEEEEEETTTTHHHHHHHHTSTTTEEEEEEEETTTCCEEEEECCCCCBCC---CBCCCSCEEEEECS
T ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHCEECCCCCCEEEEEEC
T ss_conf 36705899970257178851806877899983898735899998668997789976678776406120688866999846
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~gfPA~gEvlepFa~phlVaGwmRGSH~gPlMPV~~~da~~trFdgpPrV~alGFql~~GkL~GP~DlFddpafD~~R~~ 320 (362)
T d1umga_ 241 HGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRL 320 (362)
T ss_dssp SSSCCHHHHHHTTSSCCEEEETGGGCEEEECEEECSTTCSCCGGGCSCEEEEEEEEEETTEEEEEEESSCSGGGHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCCHHHHHHH
T ss_conf 88996465542244652114434566678743201456887567899768888888627887376324577430689999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
=
T Consensus 321 a~~~A~~mR~~Gpf~PhrLp~~emEYttlp~vl~kL~~rf~~ 362 (362)
T d1umga_ 321 ANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 362 (362)
T ss_dssp HHHHHHHHHTTTTCTTTBCCGGGCSSCCHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 999999998549987655897880211388999999887519
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27264.41 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~r~l~~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~ 80 (362)
T d1umda_ 1 HRFETFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIR 80 (362)
T ss_dssp CCCCSSCSSCBCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 99877886764777899989987899979999999999999999999999999977996022278978999999999758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~ 160 (362)
T d1umda_ 81 PGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRT 160 (362)
T ss_dssp TTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 78786873134189999987439999999845568986543542124212367444444223230077777876530344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~ 240 (362)
T d1umda_ 161 GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYY 240 (362)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHH
T ss_conf 42356522688656773499997764336870366520366644321011145344422232100026744505889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~ 320 (362)
T d1umda_ 241 VVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAE 320 (362)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999985689789971334335787655202220014667773299899999999987999999999999999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
|
T Consensus 321 V~~a~~~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~~ 362 (362)
T d1umda_ 321 LERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362 (362)
T ss_dssp HHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999998679989899971315799963999999999559
|
| >d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Ssud-like monoxygenases domain: Alkanesulfonate monooxygenase SsuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27258.59 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~AE~lGfd~~w~~eh~~~~dp~~~la~la~~T~rI~lgt~V~~ 80 (362)
T d1nqka_ 1 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRP 80 (362)
T ss_dssp CCBEEEEECCTTCEESSTTSSTTEECCCHHHHHHHHHHHHHHTCSEEEECCSTTSCCHHHHHHTTSTTCSSCEEEEEECT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 92479997456899887888888788999999999999998499999968888888899999999997490699999739
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~~~~g~~~~~~~~~~~~~E~~~ilr~l~~~e~v~~~G~~~~~~~~ 160 (362)
T d1nqka_ 81 SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGA 160 (362)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHTTTCCEEEECSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 98986999999999999749985268863666888852122220245566678989999875025664554124652587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~p~~~p~ppi~~a~~~p~~~~~Aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d1nqka_ 161 KLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW 240 (362)
T ss_dssp CCSSCCSSSSSSCEEEECSSHHHHHHHHHHCSEEEEECCCHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEESSHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
T ss_conf 54234478997016874265789998874265512458999999999999999999709975242343699944689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~V~e~L~~~~ 320 (362)
T d1nqka_ 241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYA 320 (362)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHSCC-----------------CTTEEETTEEGGGGSSSSSCSCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 98765665430889999986542012100466776530340144433467767777506888708858999999999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
+
T Consensus 321 ~~G~d~~~l~~~~~~~~l~~f~eeV~P~l~~~~~~~~~~~~~ 362 (362)
T d1nqka_ 321 ALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL 362 (362)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHTGGGSCBCCCCCCCCCCC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 729998999489998999999998999870135067899998
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=100.00 E-value=0 Score=27257.97 Aligned_cols=1 Identities=0% Similarity=-2.188 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~f~le~G~~l~~~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~ 80 (362)
T d2pl5a1 1 GSIGIIETKYAEFKELILNNGSVLSPVVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKS 80 (362)
T ss_dssp CCCCBCCCEEEEESCEECTTSCEESSEEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSS
T ss_pred CCCCCEEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 97673666688518756689887689569999630338889988998788776321155677667883358884599976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~~l~~viG~SmGGmqAl~wA~ 160 (362)
T d2pl5a1 81 FDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQALEWSI 160 (362)
T ss_dssp EETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 47553579962335676666675420012345557677520168899999999997186726777403577889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~ 240 (362)
T d2pl5a1 161 AYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPR 240 (362)
T ss_dssp HSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCS
T ss_pred HCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 48367664001346533677799999999999844974236875667836799999999999870926666563333444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~ 320 (362)
T d2pl5a1 241 GNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVK 320 (362)
T ss_dssp SCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 55442067799999998988874078778999986311146333225999996189988999857552759999999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
=
T Consensus 321 ~l~~a~~~v~~~eI~S~~GHdaFL~e~~~~~~~I~~FL~~p~ 362 (362)
T d2pl5a1 321 SLEAADKRVFYVELQSGEGHDSFLLKNPKQIEILKGFLENPN 362 (362)
T ss_dssp HHHHTTCCEEEEEECCCBSSGGGGSCCHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHCCCC
T ss_conf 997579976999948999742105488999999999973999
|
| >d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27257.62 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~et~e~~~~~dail~Gai 80 (362)
T d1vlca_ 1 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV 80 (362)
T ss_dssp CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97768985799998988667999999999999998762997899998457899997789787899999999789871577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 g~p~~~~~~~~~~~~~~~~~~lR~~ldlyanvRP~r~~~~~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~ 160 (362)
T d1vlca_ 81 GGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEK 160 (362)
T ss_dssp CCGGGTTSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 79986543213477665578899974433220026753034566666555667772379850124675557777788856
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~t~~~~~Riar~Af~~A~~~~k~Vt~v~K~Nv~~~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (362)
T d1vlca_ 161 GFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQF 240 (362)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCC
T ss_conf 99989943478789999999998618980799943775201589999999999667986999730989999998665777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~~fE~~HGSApdiaGk~iaNP~a~ils~ammL~~~lg~~~~A~~i 320 (362)
T d1vlca_ 241 DVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKI 320 (362)
T ss_dssp SEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 58985306666777899998513332101210422323125686201058986480999999999987346986999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
.
T Consensus 321 ~~Av~~~l~~G~~T~Dlg~~~~~~~~T~e~~dav~~~l~~l~ 362 (362)
T d1vlca_ 321 ERAVELVIEEGYRTRDIAEDPEKAVSTSQMGDLICKKLEEIW 362 (362)
T ss_dssp HHHHHHHHHTTCCCGGGCSSGGGCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999998599570004699997769999999999999759
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=100.00 E-value=0 Score=27256.62 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvih 80 (362)
T d1pvna1 1 AKYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIF 80 (362)
T ss_dssp CEECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 95456788785566983798767777101360268774024556663569847846888768999999999888977995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 R~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNV 160 (362)
T d1pvna1 81 GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNI 160 (362)
T ss_dssp CSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 05999999998642332023221211013567777777641854775300001015788999999886533103421244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 aT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla 240 (362)
T d1pvna1 161 VDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240 (362)
T ss_dssp CSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 67889999997297579844303434343655503771677999999999875332036875353323474662357888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~g 320 (362)
T d1pvna1 241 MGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLN 320 (362)
T ss_dssp TTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHH
T ss_pred EECCCEEEHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 71340021115405565577310103513666622531213322212446521036899737996268777889999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
=
T Consensus 321 glrs~~~y~G~~~l~~~~~~~~f~~~t~~~~~E~~~H~~~~~ 362 (362)
T d1pvna1 321 KVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEGGAHDVIVK 362 (362)
T ss_dssp HHHHHHHHTTCSBHHHHHHHCEEEEBCHHHHHHHSCCSSEEC
T ss_pred HHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEC
T ss_conf 999987532767599997488999988210211568826739
|
| >d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Thiaminase I species: Paenibacillus thiaminolyticus [TaxId: 49283]
Probab=100.00 E-value=0 Score=27255.80 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~tl~~~~~~~~p~~~~~~~~~~~~F~~~~P~V~v~~~~~~~~~~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~ 80 (362)
T d3thia_ 1 ITLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDIDQA 80 (362)
T ss_dssp CEEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCCCTTTCCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCTTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf 98999966788867999999999999988193899996652544489989699989088999998898233871011110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkd~~~~aG~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (362)
T d3thia_ 81 EDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASM 160 (362)
T ss_dssp GGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHHHTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHCEEECCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
T ss_conf 01113344311569979997651210799961468997389999973789999999751257887246305877526889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~ 240 (362)
T d3thia_ 161 YLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGD 240 (362)
T ss_dssp HHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHH
T ss_conf 99999861885113677633443679999999999997304775334466770122111005818999916587655543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~P~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~fl~s~e~~~~~~~~~g~~~~~~~~~pa~~~~~e~~~~ 320 (362)
T d3thia_ 241 YAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQYLLPARHQVYEALMQ 320 (362)
T ss_dssp GGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCCCEESBHHHHHHHTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 06766546415787789875450231101676479999999999719999999998468876742445057999863310
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
=
T Consensus 321 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~e~lg 362 (362)
T d3thia_ 321 DYPIYSELAQIVNKPSNRVFRLGPEVRTWLKDAKQVLPEALG 362 (362)
T ss_dssp TCTHHHHHHHHHTCTTCEECCCCTTHHHHHHHHTTTHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 398699999999987688761799999999999999998609
|
| >d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma reesei, Cel6a [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Trichoderma reesei, Cel6a [TaxId: 51453]
Probab=100.00 E-value=0 Score=27255.75 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~gNPf~g~~~yvnP~y~a~v~~~a~~~~~~~~~~~~~~ia~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (362)
T d1qjwa_ 1 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQ 80 (362)
T ss_dssp CCCSSCTTTTSEECCCHHHHHHHHHHTGGGCCHHHHHHHHHHTTSCCCEEECSGGGHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97678998897331473058899998751368788999999846780698237788740689999999998726887228
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 lV~Y~iP~RDC~a~ss~G~~~~~~~g~~~Yk~Yid~Ia~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~~~~~ 160 (362)
T d1qjwa_ 81 FVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLEC 160 (362)
T ss_dssp EEECCCTTCSTTCSTTCCSCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECSSSHHHHHHCTTSHHHHTTHHHHHHH
T ss_pred EEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99936999971444249986656554688999999999999856897439997776066654057844457789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~yAv~~L~~pnv~vYlDaGhsgWlgw~~n~~~~a~~~a~~l~~ag~~~~~rGFatNVSNy~~~~~~~~~~~t~~n~~~~ 240 (362)
T d1qjwa_ 161 INYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYN 240 (362)
T ss_dssp HHHHHHHTCCTTEEEEEECCCTTTTCSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTSCCCSSCSSCCGGGTTCSCCS
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999970899748999788776678743214789999999984667542327898556887766677765445675514
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 e~~Y~~~l~~~l~~~G~~~~~fVIDTsRNG~gp~~~~~~g~WCNp~G~glG~~Pt~~t~~~~vDA~lWIK~PGESDG~~~ 320 (362)
T d1qjwa_ 241 EKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSD 320 (362)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 89999999999985368899989857888999988767888879999847899988999876016898578826777888
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~~D~~c~~~~a~~~aP~AG~Wf~~~f~~Lv~nA~P~~~ 362 (362)
T d1qjwa_ 321 SSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 362 (362)
T ss_dssp TTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 888777766676567899897777479999999972689779
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=0 Score=27255.65 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
T d1v8ka_ 1 PNWEFARMIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHTCCTTTTTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 96689999999986413489877888888888999980899968863799469998899189981886444655676860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~ 160 (362)
T d1v8ka_ 81 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 160 (362)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHC
T ss_conf 67678661999998999999999999998741681388632578888603330577876555687133115567777630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~S 240 (362)
T d1v8ka_ 161 PRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS 240 (362)
T ss_dssp HHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CC
T ss_pred CCCCCCCHHHEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 12346323311021463277487634577544322124577465898899946889989987414545430245674567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 SRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~l 320 (362)
T d1v8ka_ 241 SRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 320 (362)
T ss_dssp CSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHH
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 51005799999855600136765202566554444453156553332211107789999999856999688746888886
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
-
T Consensus 321 LkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 321 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp TTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 133047998619999996987010899999999999974379
|
| >d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: D-Amino acid amidase DaaA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27255.12 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~i~~~~~~~~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~l 80 (362)
T d2drwa1 1 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL 80 (362)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
T ss_conf 95789999999999775997289999999999999857882056698799998697115689999999999997699877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 dd~v~~ylp~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~llg~ii 160 (362)
T d2drwa1 81 DEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMII 160 (362)
T ss_dssp TSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCEECCCCHH
T ss_conf 76664420354434332335555326899764332223332321026777766406766532201102454311043022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 e~~tg~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d2drwa1 161 AHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANA 240 (362)
T ss_dssp HHHHTSCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGG
T ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32057526666678888502876523357311454533310211556555643233345676566334621134445566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 aGgl~sta~Dla~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yG~G~~~~~~~~~~~~gH~G~~~G~~s~~~~~ 320 (362)
T d2drwa1 241 AGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRD 320 (362)
T ss_dssp GTCEEECHHHHHHHHHHHHTTSSSCHHHHHHHHTSCEECCCTTSCEEEECSSCEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred CCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEEEE
T ss_conf 57527189999999999847997899999999974256535799888704369998459941898246578823999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
-
T Consensus 321 p~~~~~iv~l~N~~~~~~~~~~~~~~~~~~~~il~ai~~~~~ 362 (362)
T d2drwa1 321 EETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 362 (362)
T ss_dssp TTTCCEEEEEESEECSSTTSHHHHTTHHHHHHHHHHHHHHTC
T ss_pred ECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 879989999994999556899999999999999999975649
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=100.00 E-value=0 Score=27254.90 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~q~~~~~l~e~a~~~~~~d~~lll~~y~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~nA~~fl~~~~Q~k~~k~~~~~v~ 80 (362)
T d1svma_ 1 KQVSWKLVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVL 80 (362)
T ss_dssp CCCCHHHHHHHHHHTTCCCHHHHHHHHHGGGSCSTTCHHHHTTCCHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97428888988987589739999999998712518889999877789999999860669999873106899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~kr~~~~~ms~~e~i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 160 (362)
T d1svma_ 81 AKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160 (362)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99997312699899999999999853863334544467888999999998644325899999999998289976769998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~ 240 (362)
T d1svma_ 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSV 240 (362)
T ss_dssp CSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
T ss_conf 99998889999999998599789997742011888875777799899999876541068997288750731134568860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~ 320 (362)
T d1svma_ 241 KVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPV 320 (362)
T ss_dssp CEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCH
T ss_conf 13444210024553167724650654300122466736886268974789999999984035788888999987368987
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
=
T Consensus 321 ~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~Gk~ile 362 (362)
T d1svma_ 321 AEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD 362 (362)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999987524149999999999976997779
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27254.24 Aligned_cols=1 Identities=0% Similarity=0.171 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA 80 (362)
T d2gjxa1 1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA 80 (362)
T ss_dssp CSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98558677638888089999999999998299389999874787600147873144337868878863899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lF~~~~iHiGgDE~~~ 160 (362)
T d2gjxa1 81 RLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDF 160 (362)
T ss_dssp HHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCSCCS
T ss_pred HHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 97598798536665046899874833137665788877755665777377899899999999885146537740540124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~w~~~p~~~~~~~~~g~~~~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~l~~d~ii~~W~~~~~~~~~~~~~~ 240 (362)
T d2gjxa1 161 TCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNYMKELEL 240 (362)
T ss_dssp HHHHHCHHHHHHHHHHTCTTCSHHHHHHHHHHHHHHHHTTTCEEEEEHHHHHTTCCCCTTCEEEECCSSSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 43336878899998617788999999999999999999739706744410256777899872564314543668989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~G~~~i~s~~~yl~~~~~g~~w~~~y~~~p~~~~~~~~~~~~ilG~e~~lW~E~i~~~~l~~~~~PRl~A~AE~~Ws 320 (362)
T d2gjxa1 241 VTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS 320 (362)
T ss_dssp HHHTTCEEEECTTCCTTSCBSSCTHHHHHHCCTTCSSCCHHHHTTEEEEEEEECTTSCSTTTHHHHHTTHHHHHHHHHHS
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97579859981674256567777656545531036766865650550347770107778510688899799999999859
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~d~~~f~~Rl~~~~~rL~~~Gi~~~p~~~~~c~~~~~~ 362 (362)
T d2gjxa1 321 NKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQ 362 (362)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCSSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
T ss_conf 987889999999999999999977998769998645420329
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27253.84 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~ 80 (362)
T d1q8ya_ 1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN 80 (362)
T ss_dssp CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 97888888844785799899750778189999999999799999983431336899999999998401455555422767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~ 160 (362)
T d1q8ya_ 81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME 160 (362)
T ss_dssp TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEE
T ss_conf 64789987631256520234320003542000001223467868999999999999988876405864656770570563
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~ 240 (362)
T d1q8ya_ 161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 240 (362)
T ss_dssp EEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 05765644305675314421234454223665210571321466777643201237899999878899898755432102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp 320 (362)
T d1q8ya_ 241 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 320 (362)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCC
T ss_conf 68999999983799878862453220001320122024323577644421000156743589999999998779945790
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------9
Q 001846 864 -----------------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------------V 864 (1006)
=
T Consensus 321 ta~e~L~Hp~f~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 362 (362)
T d1q8ya_ 321 DAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR 362 (362)
T ss_dssp CHHHHHTCGGGTTCTTCTTCCCTTSCTTCBSTTSTTSSSCCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 899996693407898744477998666788899984354409
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27184.35 Aligned_cols=1 Identities=0% Similarity=0.337 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~ 80 (361)
T d2ozla1 1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 80 (361)
T ss_dssp CCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98876565353302015779988788899999999999999999999999999779875065687877999999998679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v 160 (361)
T d2ozla1 81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEV 160 (361)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEECCCCCCHHEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 55785144444210223104610223312687565566554400123466667645445655157899997654058976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~~~A 240 (361)
T d2ozla1 161 CLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFA 240 (361)
T ss_dssp EEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99972688766763236555554326765899986786667770110354220001365415996267705799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A 320 (361)
T d2ozla1 241 AAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA 320 (361)
T ss_dssp HHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99986069888999865568887666652124777888744413899999999999879999999999999999999999
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
-
T Consensus 321 ~~~A~~sp~P~~~~l~~~VYa~~~p~~~~~~~~~~~~~~~~ 361 (361)
T d2ozla1 321 AQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361 (361)
T ss_dssp HHHHHHSCCCCGGGTTCSSSSSCCCEEEECSBTTCEEEECC
T ss_pred HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99998588969899973216899807877689996116789
|
| >d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Xanthan lyase species: Bacillus sp. gl1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=27182.35 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 sdd~~~lr~rw~~~l~g~~~~d~~d~~~~~~l~~l~~~A~~~~~~~~~~~~~~~lW~~l~~~~~~~~l~~~~~rl~~mA~ 80 (361)
T d1x1ia1 1 SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNAVYERLRTMAL 80 (361)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSSGGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91899999999999708876786768999999999999997787458887766767888766630479999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Ay~~pgs~ly~d~~l~~~I~~al~~~~~~~y~~~~~~~~~NWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (361)
T d1x1ia1 81 AATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDIAVLLYDDISAARMATYMDTIDYFT 160 (361)
T ss_dssp HHHSTTCTTTTCHHHHHHHHHHHHHHHHHTSSTTSCTTSSSHHHHHTHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 98299985538999999999999999971888888998999125551757999999998514169999999998999857
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 p~~~~TGaN~~d~a~~~~~rglL~~d~~~~~~a~~~i~~~~~~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG~~~l~~~~~ 240 (361)
T d1x1ia1 161 PSIGLTGAARAWQAIVVGVRAVIVKDAVKLAAARNGLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTAN 240 (361)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSTTSSSCCSSSSEECTTSCEEETTTEECTTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEECCCCEECCCCCHHHHHHHHHH
T ss_conf 89886530788789999999998469999999999976401305526888651478634257710167533999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~~~~~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 320 (361)
T d1x1ia1 241 LMYLLSGSTWSVSDPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFK 320 (361)
T ss_dssp HHHHHTTSTTCCCCGGGGHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99997799887887899999999996002574377016657764014788654457999999999987229999999999
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
-
T Consensus 321 ~~~k~~~~~d~~~~~~~~~~~~~~~~~~~ll~d~~i~~~~~ 361 (361)
T d1x1ia1 321 QIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVDDPSIAPAAA 361 (361)
T ss_dssp HHHHHHHHHCCSSCGGGGSCHHHHHHHHHHHTCTTCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999986076654235887889999999856898897879
|
| >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Deoxyhypusine synthase, DHS domain: Deoxyhypusine synthase, DHS species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27182.24 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~p~~a~~~v~~~s~~~p~~~~~V~g~df~~~~~~~~ll~~~~~~GFqA~~Lg~A~~i~~~Mi~~~~~~~~~~~~~~~~~~ 80 (361)
T d1dhsa_ 1 APAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLT 80 (361)
T ss_dssp CCHHHHHHHSCCCCCCCTTCCCCCCCCGGGCCCHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred CCHHHHHCCEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 95045424341678899999744178778998999999999873930788999999999998752257765422222234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~ctIfLt~agam~saGlr~~i~~LIr~g~Vd~IVtTga~lehDi~~~~g~~y~g~f~~dd~~Lr~~ginRIgd 160 (361)
T d1dhsa_ 81 QSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGN 160 (361)
T ss_dssp ------CSSEEEEEECTHHHHSTHHHHHHHHHHTTCCSEEEECHHHHHHHHHTTTSCCEECCTTCCHHHHHHTTEEEETT
T ss_pred CHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 00125666438986144411465799999999859977898068850399999808641076568848876437651220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 v~Ipee~~~~~e~~i~~il~~~~~e~~~~~~~~~~~e~i~~lg~~i~~~~Sil~~A~~~~vPVf~Pa~~DssiG~~l~~~ 240 (361)
T d1dhsa_ 161 LLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH 240 (361)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHCCTTCHHHHHHHTTCCEECTTTTSSHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
T ss_conf 63177999999999999999999985404776464999999974268952499999982997654776516699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~i~iGGGvpKh~i~~~~l~r~g~dyavqItta~~~dGslSGA~p~EaiSWG 320 (361)
T d1dhsa_ 241 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWG 320 (361)
T ss_dssp HHHSTTCCCCSHHHHHHHHHHHHTCSSEEEEEESCTHHHHHHHHHHHTTTSBSEEEEECCCCSTTCCSTTCCHHHHHHHT
T ss_pred HHCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 96189953559999999999987466762699959826378776455317998799970799986766689833013057
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
=
T Consensus 321 Ki~~~a~~v~V~~DATIv~PLl~a~~~~k~~~~~~~~~~~~ 361 (361)
T d1dhsa_ 321 KIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEKNED 361 (361)
T ss_dssp SBCTTCCCEEECSCHHHHHHHHHHHTGGGGHHHHHHHTTCC
T ss_pred CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 61789883799960779999999999975401124322489
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27181.35 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~ 80 (361)
T d1m32a_ 1 YLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVL 80 (361)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 95036999877799999851544698868999999999999999829899988999889789999999998654224653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~ 160 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTY 160 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEE
T ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 01101223457777655301233222234678640256899874247662699843002342011234442211452146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (361)
T d1m32a_ 161 IVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 240 (361)
T ss_dssp EEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf 75200256745532233445268763034533799866789625554100024566432200111011234566678777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~g 320 (361)
T d1m32a_ 241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 10446899999999985003566788899887777777622875467856649967999899988779999999999889
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
-
T Consensus 321 i~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~~~ 361 (361)
T d1m32a_ 321 FVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 361 (361)
T ss_dssp EECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 28978986889989984788899999999999999975999
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=100.00 E-value=0 Score=27180.35 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 1 SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 80 (361)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 99873357988188899999999987632146865434576898999999999999999968999878999788725999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~tg~~~~~~~i~~ 160 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKA 160 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEECCEEEE
T ss_conf 99985255689823898404111125555430374012102343333415555542046761489972464125115777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d2c0ra1 161 FPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPP 240 (361)
T ss_dssp CCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30468841899860333320234334325897413345245673799876876627443223324120003331014664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~G 320 (361)
T d2c0ra1 241 SFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20230115677766502424777789999998756665404654345777431454399997898546999999999788
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
=
T Consensus 321 I~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~ 361 (361)
T d2c0ra1 321 FVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG 361 (361)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88736988678698870688999999999999999999659
|
| >d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Betaine-homocysteine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27177.26 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~llerL~~~~ililDGgmGteL~~rG~~~~~~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~ 80 (361)
T d1lt7a_ 1 KGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV 80 (361)
T ss_dssp CCHHHHHHTTCCEECCTTHHHHHHHHTC-------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred CHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCHHH
T ss_conf 95889862699799978889999977999899988688852959999999999996799998278857879998613266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~aa~~~a~~~~~~~~~~VaGsigp~~~~~~~~~~~~~~~~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a 160 (361)
T d1lt7a_ 81 LEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWA 160 (361)
T ss_dssp --------CHHHHHHHHHHHHHTTTCEEEEEECCCHHHHTTCCHHHHHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 78899999999999998510244321010256678631121104788999999899887504322336777568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~g~nc~~~p~~~~~~i~~l~~~~~~~~~~~~~~~~p~~ 240 (361)
T d1lt7a_ 161 VETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLA 240 (361)
T ss_dssp HHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEEEEESSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred HHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99986036608898787178863677849999988730620555214554676899999999765541455135404652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~Ga~iIGGCCGttP~HI~~la~~l~~~~~~~~p~~~~~~~ 320 (361)
T d1lt7a_ 241 YHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGS 320 (361)
T ss_dssp BCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHTHHHHSSCCC-------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 33778776566789887687665647999999999999987990999898798999999999985145899998888877
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (361)
T d1lt7a_ 321 WGSGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 361 (361)
T ss_dssp -------------CTTSCHHHHHHCCCCCSCTTSCSCCCCC
T ss_pred CCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 36776426875015446599998626678998881024898
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=100.00 E-value=0 Score=27176.11 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~s~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~dL~~al~~~~~p~iI~v~G~I~~~~~~~~~~~~~~~~~ 80 (361)
T d1pe9a_ 1 AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKAR 80 (361)
T ss_dssp CCCCCTTTTCCCCSSSGGGSSSCCCTTTTCCGGGEEEECSHHHHHHHHTTTTSCEEEEECSEEETTTTCCCCSHHHHHHH
T ss_pred CCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 95212111322477634351799876888848779996999999998747997089998549978887443332220223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~i~v~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~ 160 (361)
T d1pe9a_ 81 SQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHV 160 (361)
T ss_dssp SEEECCSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESC
T ss_pred CEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 15871898579870688489621699850366426999827865575577765668775667873687517743999852
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~ 240 (361)
T d1pe9a_ 161 TISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTE 240 (361)
T ss_dssp EEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 74058766533345567630541025875057431373387546877623735677776555786259997854268757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 R~P~~r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 320 (361)
T d1pe9a_ 241 RAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSA 320 (361)
T ss_dssp CSSEESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEEESSCCEEEEESCEETTEE
T ss_pred CCCCEECCEEEEECCEEECCCCCCCCCCCEEEECCCCCEEEEECEEEECCCCCCCCCCCEEECCCCCEEECCCEEECCCC
T ss_conf 68873076489989665368676430001565057887799985088899987553220012178877955882520741
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~~~~~~~~py~y~~~~~a~~v~~~V~~~AGaGkl 361 (361)
T d1pe9a_ 321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL 361 (361)
T ss_dssp CCCTTSSCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 23368765555667875210456257788988744798879
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=0 Score=27175.53 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 97999888767999999999977997899984798644277787653168847998657898999999975799999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 60166666775999999999999999999999841222101468549999344101177866775434567887566889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a 240 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECEEHHHHH
T ss_conf 99999899999999999999999968989999138568929985769999999997499817947999689078899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~ 320 (361)
T d1kewa_ 241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL 320 (361)
T ss_dssp HHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCC
T ss_conf 99999985698899699899997534777767653001233445676543255689999875531578999998799889
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
-
T Consensus 321 ~~l~e~i~~ti~w~~~n~~~~~~~k~~~~~~~~~~~y~~~~ 361 (361)
T d1kewa_ 321 ETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGRQ 361 (361)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHSCCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999986998887661778999998515699
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27174.78 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~ 80 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE 80 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 92738789799998999999999985788899899898999999999999838999802599908889999987653111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~ 160 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD 160 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 23223233334520368998503437861133332223322211021003677416873044432233320234343200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d1d2fa_ 161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSP 240 (361)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSC
T ss_pred HHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 11332200010234332323333456532222233333334454444445420034132267888876510223466510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~ 320 (361)
T d1d2fa_ 241 SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVA 320 (361)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEE
T ss_conf 01247889987503411210133322036778888765310223355567415999983589999999999999869999
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
=
T Consensus 321 v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 321 IMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98360018899987999971899999999999999999619
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27181.22 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~ 80 (361)
T d1rqga2 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (361)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 96599944898889873456445629999999999981599267158537650999999998299999999999986000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~ 160 (361)
T d1rqga2 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF 160 (361)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCBCEEEEEEEEEECGGGT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 00001222233544566002344553443101368533124664100022011033213589954310263478750113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 240 (361)
T d1rqga2 161 AERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP 240 (361)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 54432101335433210345542002023333333346435667654346788278750345546564566676667733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~ 320 (361)
T d1rqga2 241 NEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 320 (361)
T ss_dssp TTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBH
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCH
T ss_conf 57777654016886348734655533100148999998632565542014778978897023975898668779988788
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
+
T Consensus 321 ~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~~ 361 (361)
T d1rqga2 321 HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361 (361)
T ss_dssp HHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99998868089999999608888999889999999864589
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=0 Score=27172.11 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~q~f~w~~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd 80 (361)
T d1mxga2 1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE 80 (361)
T ss_dssp CCSSCGGGTCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93124455887999452687887855999999789999649998996957407999889998865665567543456778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T d1mxga2 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFG 160 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78899999999999999779979998603255577656577666556545665567888766555676666554223456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (361)
T d1mxga2 161 GFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGA 240 (361)
T ss_dssp TSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC
T ss_conf 76423677605689999999987655441687604505421199999987775168733256346788998655532688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~~~~a~a~llt~pGiP~iyYGd~~~~ 320 (361)
T d1mxga2 241 KVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEW 320 (361)
T ss_dssp EEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 43041589999999944983789999862521025798781336736678010158999999982899017885897566
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------9
Q 001846 864 ----------------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~d~~~f~R~gd~~~ 361 (361)
T d1mxga2 321 LNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRR 361 (361)
T ss_dssp SCHHHHHHHHHHHHHTCCSCEEEEEECSSEEEEEECCCSSC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf 77079999999999716798478987799899996788889
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=0 Score=27103.67 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~ 80 (360)
T d1k32a3 1 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 80 (360)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCCHHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 98601005146889999999989969999899994899169998888999899999999992899899999899994887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf 50897127741211454321000111110000012221000000135520230121322566521233121100025654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 26630455713530354322110012577999999959985575333544023203641179852469601206877767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~ 320 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 15531136526654001012476752675413898569999735997069996489987999979997498864886879
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
|
T Consensus 321 ~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~~ 360 (360)
T d1k32a3 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360 (360)
T ss_dssp EECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 9999898999997899499999999985459984162259
|
| >d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Human (Homo sapiens), liver isozyme [TaxId: 9606]
Probab=100.00 E-value=0 Score=27109.55 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGiLAaDeS~gT~~Krl~~igventeenr~~yR~~l~tt~~~~~~~IsGvILfe 80 (360)
T d1qo5a_ 1 AHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFH 80 (360)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHSTTSCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCGGGGGTEEEEEECT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999981489879982689983777898769999779999998888518703435656898369
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLdgL~~Rl~~y~~~Ga~faKwRaVi~i~~~~ps~ 160 (360)
T d1qo5a_ 81 ETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSS 160 (360)
T ss_dssp TGGGCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCH
T ss_pred HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf 99841423677466899865963578348750007667765335662018899999986474445212200245577745
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~l~~~l~~~~V~LeG~lLKpnMv~pG~~~~ 240 (360)
T d1qo5a_ 161 LAIQENANALARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACT 240 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCBCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999999971976431433245788746889999999999999887652134678742001025511055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamN~~~~~~pW~lsfSygRALQ~s~Lk~W~g~~~n~ 320 (360)
T d1qo5a_ 241 KKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAANK 320 (360)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCTTCCEEEEBCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESGGGTHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHH
T ss_conf 55787888899887764303667871001688744888999999986157899976899643756189999857881428
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
.
T Consensus 321 ~~aQ~~~~~ra~~Ns~A~~G~y~~~~~~~~~~~~~lfva~ 360 (360)
T d1qo5a_ 321 EATQEAFMKRAMANCQAAKGQYVHTGSSGAASTQSLFTAC 360 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCSCCCHHHHSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 9999999999986068756740788887865443003139
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=100.00 E-value=0 Score=27100.71 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~W~~~w~~~a~~~~~~a~~~~~~g~~~~A~~~~~~A~~~~~~a~~~~~ 80 (360)
T d2jbwa1 1 KPEDEMDNWGRLILDGVSYSDMVGARDRPKEITWFDYWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWF 80 (360)
T ss_dssp CHHHHHCCHHHHHHHTCCHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 92658888776761797589998630689942799999999999999999999769987899999999999997356557
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~ip~dg~~l~g~l~~P~~~~~~P~Vi~~hG~~~~~e~~~~~~~~l~~~G~~ 160 (360)
T d2jbwa1 81 DERRQKGQARKVELYQKAAPLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMA 160 (360)
T ss_dssp STHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEETTEEEEEEEECCSSSCCEEEEEEECCSSCCTTTTHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 93677899999999999986479873996357677666239993699999529999379876477899999999966998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 vl~~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~ 240 (360)
T d2jbwa1 161 TATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDY 240 (360)
T ss_dssp EEEECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTT
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 99971642223576555656699999999999996600155553423331050999987515987554999746555777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vp~~~~~~l~~~~~~~~~~l~~~~~g 320 (360)
T d2jbwa1 241 WDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLVVEKDG 320 (360)
T ss_dssp GGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCGGGEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 75433456677777506873577889877406645467527999899972999928999999999657998599997999
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
-
T Consensus 321 ~H~~~~~~~~~~~~i~dWl~~~L~~g~~~apt~~~~p~~~ 360 (360)
T d2jbwa1 321 DHCCHNLGIRPRLEMADWLYDVLVAGKKVAPTMKGWPLEH 360 (360)
T ss_dssp CGGGGGGTTHHHHHHHHHHHHHHTSSCCCCCCEESCSCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9677767579999999999998314897899877788889
|
| >d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=27107.88 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 mntfG~~~r~tt~GESHG~~lg~vidG~PaGl~i~~e~I~~~L~RR~pg~~~~t~R~E~D~veilSGv~~G~TtG~PI~~ 80 (360)
T d1sq1a_ 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80 (360)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTTC-----------CCEEECSSEETTEECSSCEEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEE
T ss_conf 98775523898525578884489993409588609999999996179999889867888717992263689876750078
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~s~v~~IG~~~ 160 (360)
T d1sq1a_ 81 VVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV 160 (360)
T ss_dssp EEC----------------------------------------CCCTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf 88716787310466623678750777876553985776887515999999999999999999862100666788996661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gvP~GLG~p~fdkLda~LA~A~mSIpAv 240 (360)
T d1sq1a_ 161 SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMGINAV 240 (360)
T ss_dssp CCSCGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHHTSTTE
T ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 47776646877732573347546778999999999854578763189999846997648601365135888777336310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 KGVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~~GGi~GGiSnG~pi~~rva~KP~sSi~k~q~TVd~~~~~~~~~~~gRh 320 (360)
T d1sq1a_ 241 KAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRH 320 (360)
T ss_dssp EEEEETTGGGGGGSCHHHHCCCCSSSSCSCCTTCSEETTEEBSSCEEEEEEECCCC---------------------CCS
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 01530565565420066462222136644456786000235888628999978875567753222178988788557877
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
=
T Consensus 321 Dpc~vprA~~V~Eam~a~vlad~~L~~~~~~~~~~~~~~g 360 (360)
T d1sq1a_ 321 DPCVGVRGSVVASAMVRLVLADCLLLNASANLNNLKNAYG 360 (360)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 8707165049999999999999999845779999875449
|
| >d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: AF1104-like superfamily: AF1104-like family: AF1104-like domain: Hypothetical protein At2g17340 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27106.47 Aligned_cols=1 Identities=100% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~ 80 (360)
T d1xfia_ 1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE 80 (360)
T ss_dssp CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97566466774213766887788887555221526677999999977889999985089999889999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif 160 (360)
T d1xfia_ 81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF 160 (360)
T ss_dssp HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99848765576017889999999999976999800999999999999987999999753016079999999999987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~rell~~g~~V~ 240 (360)
T d1xfia_ 161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV 240 (360)
T ss_dssp ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEE
T ss_pred HCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 30220021444046426999999854589753669999998735775407999358734999887899999965898499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~ 320 (360)
T d1xfia_ 241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIE 320 (360)
T ss_dssp EEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 99888752336249999999998751205765202135189657999887185768999999983699999828751132
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
|
T Consensus 321 tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~ 360 (360)
T d1xfia_ 321 TNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360 (360)
T ss_dssp BSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred CCCHHHCCCCEEHHHHHCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 0101322788103334258999999499611279982479
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=100.00 E-value=0 Score=27104.91 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~ 80 (360)
T d1w23a_ 1 VKQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 98436707988488999999999998753046865434576788999999999999999968999878999478489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~ 160 (360)
T d1w23a_ 81 TMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQN 160 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEEEE
T ss_conf 99876411467654155324123334788777640201202444453201112200335553213754881665104432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1w23a_ 161 FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP 240 (360)
T ss_dssp CCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 21463036986113453432243565542488504434457765046703434313445774200124543100013331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~G 320 (360)
T d1w23a_ 241 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQG 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20120015778777641004899999999999888887633520036888201640699998599735999999999789
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
-
T Consensus 321 I~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~~ 360 (360)
T d1w23a_ 321 FVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA 360 (360)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8665077766717899508999999999999999998559
|
| >d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Amidinotransferase domain: L-arginine: glycine amidinotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27104.43 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~vn~~sE~~~Lk~VivGr~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ea~ee~d~l~~~Le~~GV~V~r 80 (360)
T d1jdwa_ 1 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRR 80 (360)
T ss_dssp CCCBBCBSSSCEEEEEECBCTTCBCCCCCHHHHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99722767463739999517767799976221347856665542332146455999999999999999999876967861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (360)
T d1jdwa_ 81 PDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELY 160 (360)
T ss_dssp CCCCCTTCEEECSSCEEECCCBCCHHHHEEEEBTEEEECCBSCGGGTTGGGGTHHHHHHHHHTTCEEEECCCCCCCGGGB
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 46233310101000003675545476202663794233333456553524454157887514675304435543345333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~H 240 (360)
T d1jdwa_ 161 NQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMH 240 (360)
T ss_dssp CTTCCCSSHHHHHHHHHHTCCSBCSSSCCBCGGGEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHCC
T ss_conf 45544544454321112463254055125425420111652120234422135899998644665311102336733327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 lD~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~N~LsI~p~~Vi~~~~n~~~~~~L 320 (360)
T d1jdwa_ 241 IDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMF 320 (360)
T ss_dssp STTTEEEEETTEEEECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHH
T ss_pred CCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEECCCCHHHHHHH
T ss_conf 66226871587189951336355531332585358535223454542153453051589997699999908889999999
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
=
T Consensus 321 ~~~Gi~vi~i~~~e~~~~~GG~~CmT~pl~Reg~~e~y~~ 360 (360)
T d1jdwa_ 321 EKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 360 (360)
T ss_dssp HHTTCEEEEECCHHHHTTTCCTTTTEEEEEESCCCCCSCC
T ss_pred HHCCCEEEEECHHHHHCCCCCCEEECCCEEECCCCCCCCC
T ss_conf 9888989992626543159997384725087786554669
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27103.74 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 93774798858899999999998751024686543457678899999999999999996899997799978826888863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i 160 (360)
T d1bjna_ 81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET 160 (360)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCC
T ss_pred HHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 00102566543330035630344687776417632121012477764035666412577604999655555457652100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1bjna_ 161 PDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 240 (360)
T ss_dssp CCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred ECCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 01244522565662352424436513305999726665447776267641012211446774112678876532024444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi 320 (360)
T d1bjna_ 241 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGL 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 30278889999988641068999999999999988755335430125774344523999875885249999999997898
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~~ 360 (360)
T d1bjna_ 321 HALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 360 (360)
T ss_dssp ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7634877567388983488999999999999999999739
|
| >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Patatin domain: Patatin species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Probab=100.00 E-value=0 Score=27100.47 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~ 80 (360)
T d1oxwa_ 1 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP 80 (360)
T ss_dssp CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99700899989878999999999999997497234667997142099999963999999999869970318999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 160 (360)
T d1oxwa_ 81 FYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDIS 160 (360)
T ss_dssp HHHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99861210100123346764546999999999958701332167532673015888748973644356886322698861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~~~~~~~~~~~~~~~~~~~s~gtg~~~ 240 (360)
T d1oxwa_ 161 YSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTS 240 (360)
T ss_dssp HHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBC
T ss_pred HHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 15513887778779732247787326774033542256726778999987624675322245677663155314666664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~ 320 (360)
T d1oxwa_ 241 EFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQ 320 (360)
T ss_dssp TTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 33333212442001167689999999876559999999999987447988479974886656541146899999999999
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
-
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~L~~~~~~L~~er~~r~~~~ 360 (360)
T d1oxwa_ 321 VGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRANKA 360 (360)
T ss_dssp HHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999996330343066799999999999999998763059
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=27098.36 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDI 80 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95778998968899999999801879699998168987666543454422215764246763212211488755478655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 160 (360)
T d1kdga1 81 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQG 160 (360)
T ss_dssp SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCHHCCCCCCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 43101220111011333112244022100246653333013444333202332110037886344422589999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~ 240 (360)
T d1kdga1 161 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFI 240 (360)
T ss_dssp CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCEEE
T ss_conf 16787455788544321000120135322322211356664266300104867999997299899999985236762489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~p~v~~~l~~~~~~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~ 320 (360)
T d1kdga1 241 PVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTN 320 (360)
T ss_dssp EEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTCBCSCTTTCSBCTTCBBTTCS
T ss_pred EEEECCEEEEECHHHHCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEECCCCEEECCC
T ss_conf 99979999993656747299986589955666775328643445546453133663200017897562777531463368
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
=
T Consensus 321 ~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~~~~ 360 (360)
T d1kdga1 321 NLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGGP 360 (360)
T ss_dssp SEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8368854036545789977556588999998875204899
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=100.00 E-value=0 Score=27102.06 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~ 80 (360)
T d1pn0a1 1 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDM 80 (360)
T ss_dssp CCEEEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 99888788989989598999999998705332489868998689998868859998989999999869838999626776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~dg~~s 160 (360)
T d1pn0a1 81 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAY 160 (360)
T ss_dssp CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEECCCC
T ss_conf 31599722667741112455543333344320253188999999999986165411356732563688638999605776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1pn0a1 161 PVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMI 240 (360)
T ss_dssp CEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 35999998404566542331113787058866327765512456865302368888777631754332001011221110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 320 (360)
T d1pn0a1 241 VTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRL 320 (360)
T ss_dssp ECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14444646928983675432050457887520889999999888876589738999999999999999999999999998
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------9
Q 001846 864 ---------------------------------------V 864 (1006)
Q Consensus 864 ---------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~y~~ 360 (360)
T d1pn0a1 321 FSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDE 360 (360)
T ss_dssp HHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf 7799368888860335587899999865554330766688
|
| >d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Bacteriochlorophyll A protein superfamily: Bacteriochlorophyll A protein family: Bacteriochlorophyll A protein domain: Bacteriochlorophyll A protein species: Prosthecochloris aestuarii, strain 2k [TaxId: 1102]
Probab=100.00 E-value=0 Score=27035.73 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 tTtA~~Dyeiileggssswg~vk~rakvNVP~a~pllp~dc~iKi~~Kpl~~~kgvVR~t~~ieSiVDstknkl~vE~DI 80 (359)
T d4bcla_ 1 TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDI 80 (359)
T ss_dssp CCEEEEEEEEEECCTTCCCEEEEEEEEECSCCCCSSCCEEEEEEEEEEECC---CCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHCCEEEEEEEE
T ss_conf 94212334789707876531023567603898777766666227620205776786999864045776401404899862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ANEtkdrRiavGEG~vsVGdFSH~FsfEGsVvnl~YyRsdavrrNvpnp~ymqGrqfHDi~mkVPldn~dlIdTWe~~~~ 160 (359)
T d4bcla_ 81 ANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQ 160 (359)
T ss_dssp EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEESCCCHHHHTTCSSCCCCCEEEEEEEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCEEEECCCEEEEEEEEEEEEEEEECCHHHHHCCCCCEEECCCCHHHEEEECCCCCHHHHHHHHHHHH
T ss_conf 35787640673243387602224578620488999950146763599865552731100478558995568899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 a~~~~~~nF~dwIrdfWfIGPa~~al~egGQ~is~I~v~~~~~e~g~k~pvgv~rwrfsh~gsgivdsisrw~elfp~d~ 240 (359)
T d4bcla_ 161 SISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGGEKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQ 240 (359)
T ss_dssp HC---CCSHHHHHHHHHSTTTHHHHHHHTTEEECCCEEEEEEEECC---CEEEEEEEEEEEESSCCHHHHTTTTTCCGGG
T ss_pred HHHCCCCCHHHHHHHHEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHH
T ss_conf 87538974566556514522778888752730330799741025688787553267863787510226777887477634
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~~pa~ieg~frsdsqgievkvdg~lpgvsvdaggg~rrilnhpliplvHHGmvgk~n~f~vd~q~kv~lPkGyK~ryaA 320 (359)
T d4bcla_ 241 LNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAA 320 (359)
T ss_dssp CSSCEEEEEEEEECSSCEEEEEEEEETTSEEEEETTEEEECCCCHHHHHHHTTTTTSSCCEEEEEEEEECCTTCEEEEEE
T ss_pred CCCCCEECCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHCCCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEECC
T ss_conf 39850441454456774489982456860442788722441688620031230312577613368999726871676516
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
-
T Consensus 321 pqf~sqn~eey~wsGG~Ya~W~EhvCKGg~gqF~ilyaq 359 (359)
T d4bcla_ 321 PQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ 359 (359)
T ss_dssp SCCSEEETTEEEEESHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CHHHHCCHHHEEECCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 301001254368637147888875414887754788429
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27027.67 Aligned_cols=1 Identities=100% Similarity=1.732 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~f~f~~P~~i~fG~g~l~~l~~~~~~~g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~ 80 (359)
T d1o2da_ 1 VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVE 80 (359)
T ss_dssp CCCCCCCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHH
T ss_pred CEECCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 93737999899948999999999997599589998586888740999999999876984999757468979899987642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtgse~t~~avi~~~~~~~k~~ 160 (359)
T d1o2da_ 81 RYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGC 160 (359)
T ss_dssp HHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCCEEEEECTTSCEEEE
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCHHHHHHHHHCCCCC
T ss_conf 00135775688516642001899999998489971331167534457787588426455422114214545675500102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~a~~ai~~~~~~l~~~~~~~~~a~~~l~~as 240 (359)
T d1o2da_ 161 TLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSRKSTPPSDALAIEAMKIIHRNLPKAIEGNREARKKMFVAS 240 (359)
T ss_dssp ECCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 35778768860754058534445665317999988876400255156688999999999876532104699999877899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~g~a~~~~g~g~~Hai~h~l~~~~~i~HG~~~ai~lp~v~~~~~~~~~ek~~~ia~~lg~~~~~~~~~lglp~~lg~~ 320 (359)
T d1o2da_ 241 CLAGMVIAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVS 320 (359)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTCHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99987551678644410245213303877412578879999999998759999999999889999999985991005979
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
|
T Consensus 321 ~~~i~~~~~~a~~~~~~~~np~~~t~e~i~~il~~alg~ 359 (359)
T d1o2da_ 321 SEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYREALGV 359 (359)
T ss_dssp HHHHHHHHHHHTTCGGGGGSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999987385021899468999999999987669
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=0 Score=27031.06 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtg 80 (359)
T d1goxa_ 1 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 80 (359)
T ss_dssp CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCC
T ss_conf 95467999999999868888889870567741999999999984626331246887798755678835578615265323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 g~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~ 160 (359)
T d1goxa_ 81 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 160 (359)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 46677864787656688629722334554565023677469984112222106778999999888754033442224102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~ 240 (359)
T d1goxa_ 161 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 240 (359)
T ss_dssp CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 22344412442357853314566553036676556411799998513788999999999861566532200244688899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~ 320 (359)
T d1goxa_ 241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGE 320 (359)
T ss_dssp HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred HHHCCCCCEECCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCH
T ss_conf 98706653220321110000000025445566503478621465057575778999998489989876899999984349
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
=
T Consensus 321 ~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~~ 359 (359)
T d1goxa_ 321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC
T ss_conf 999999999999999999985899978959954657899
|
| >d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TROVE domain-like family: TROVE domain-like domain: 60-kda SS-aARo ribonucleoprotein species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=100.00 E-value=0 Score=27029.93 Aligned_cols=1 Identities=0% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~q~~p~~~~qv~N~aGg~a~~~~~~~~L~rfl~~Gt~~~tyY~~~~~l~~e~~~~l~~l~~~~~~~~~v~~l~~~~~~g 80 (359)
T d1yvra1 1 MDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEG 80 (359)
T ss_dssp CCTTSCSSTTCEECTTSCEEEECCHHHHHHHHHHHCCTTCCSSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 98777698211556667720369989999999961368986745826526889999999997278278999999998437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~r~~p~l~aLal~a~~~d~~~r~~a~~~~~~v~r~~~~L~~fv~~~~~~~~~~~~~~~gr~lrkav~~Wy~~~~~~~L 160 (359)
T d1yvra1 81 RAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNL 160 (359)
T ss_dssp CSSCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 88784269999999986898889999999999996682189999999998536768786258999999999864998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 A~~~~Ky~~r~gwShkDlLrl~Hpkp~~~~~~~l~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 240 (359)
T d1yvra1 161 AMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEI 240 (359)
T ss_dssp HHHHTSCCCSSSCCHHHHHHHTTCCCSSHHHHHHHHHHHTCHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998517778997999999808999847899999999638511111134433660379999999999998715878889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~lI~~~~Lt~E~~p~~~~~~~~vWeaLi~~mp~~ALLRNL~~l~~~gvl~~~~~~~~~V~~rL~D~~~l~~arihP~~~ 320 (359)
T d1yvra1 241 IHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHI 320 (359)
T ss_dssp HHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTCHHHHHHTTCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 99999728989870144316899999998718899999978877452567877278999999847999999725582999
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
|
T Consensus 321 L~A~~~Y~~g~~~~~~~~w~p~~~i~~AL~~A~~~sf~~ 359 (359)
T d1yvra1 321 LVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKL 359 (359)
T ss_dssp HHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999984478666677788599999999999987079
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=100.00 E-value=0 Score=27028.33 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~ 80 (359)
T d1m6ex_ 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL 80 (359)
T ss_dssp CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98417603379998533999999999999998999999999624677899865999727899965799999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~ 160 (359)
T d1m6ex_ 81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE 160 (359)
T ss_dssp HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCC
T ss_conf 98638999972899847888526799998463012678875898657722320178874577642003344303885445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eG 240 (359)
T d1m6ex_ 161 SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEG 240 (359)
T ss_dssp CCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTT
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 78886797479998999999999999999999999998357857999985567898888863518999999999999859
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 lI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hf 320 (359)
T d1m6ex_ 241 LIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF 320 (359)
T ss_dssp CSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98899997316842668889999885148975655447654154201223444565889999999999999999999985
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
=
T Consensus 321 g~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~sL~rK~~ 359 (359)
T d1m6ex_ 321 GEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKSD 359 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 828899999999999996076549953999999996689
|
| >d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27027.62 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~K~K~aVLl~n~G~P~s~~dv~~yL~~~~~d~~vi~~P~~~~l~~~i~~~r~~~~~~~Y~~igg~SPL~~~t~~q~~~l~ 80 (359)
T d2hrca1 1 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMV 80 (359)
T ss_dssp CCCCEEEEEEECCCCSSGGGHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99966999974799999789999999974799721163488888887411008899999863899922999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~L~~~~~~~~~~~v~~amry~~P~i~~~l~~l~~~G~~~iv~lPLyPqyS~sTtgs~~~~~~k~l~~~~~~~~~~~~~i 160 (359)
T d2hrca1 81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTI 160 (359)
T ss_dssp HHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89876347665437998514355305889999985587440010155423412003226899999998541013566434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~p~yi~a~a~~i~~~~~~~~~~~~~~~~llfS~HglP~~~~~~gdpY~~q~~~t~~~i~~~l~~~~~~~~~fQSr 240 (359)
T d2hrca1 161 DRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK 240 (359)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHTTSCGGGTTTCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEECC
T ss_conf 67788188999999999999972553357772699961123131454189517889999999998734430333244447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~g~~~Wl~P~~~~~l~~l~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~~~~G~~~~~~vp~lN~~p~fi~~la~l 320 (359)
T d2hrca1 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADL 320 (359)
T ss_dssp CSSSCBSSSBHHHHHHHHHHTTCCEEEEEECSCSSCCHHHHTTTTTHHHHHSCSSSCCSEEEECCCSTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 79976679858999999997499739998986566534679988899999999975996489827999998999999999
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
+
T Consensus 321 v~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 359 (359)
T d2hrca1 321 VHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 359 (359)
T ss_dssp HHHHHHHTCSSCGGGGSCCTTCCCHHHHHHHHHHHTCCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 999864788777556888999887103888850053779
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=27026.30 Aligned_cols=1 Identities=0% Similarity=-1.489 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~gPL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i 80 (359)
T d1x74a1 1 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLI 80 (359)
T ss_dssp CCTTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCEEE
T ss_conf 98999989998278308999999999839979998999999813456651898599972859899999999986689988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~n~~pg~~~~lgl~~~~l~~~nP~lI~~sisgfG~~Gp~~~~~~~D~~~qA~sG~~~~~g~~~~~P~~~~~~~~d~~~g~ 160 (359)
T d1x74a1 81 EGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGS 160 (359)
T ss_dssp ECSCTTHHHHHTCSHHHHHHHCTTCEEEEEESSCSSSTTTTSCCCHHHHHHHTSTGGGSSCTTSCCCCCTTCCCCCCTTH
T ss_pred ECCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEHHHHHHHH
T ss_conf 66888736541898788776347816999968988898666565654455556622212789999878732189876799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~y~t~DG~~i~~~~~~ 240 (359)
T d1x74a1 161 MFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIE 240 (359)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf 99999999999999856997486311167788877799999980798865688867666765476254788368996277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~el~~~l~~~~~~~t~~e~~~~l~~~gvp~~pV~~~~ev~~dpq~~~r~~~~~ 320 (359)
T d1x74a1 241 PQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYE 320 (359)
T ss_dssp HHHHHHHHHHHTCCGGGSCCTTCGGGHHHHHHHHHHHHHTSCHHHHHHHTSSSSSCEEECCCHHHHTTCHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCHHHHHHCCEEE
T ss_conf 78777654121201344321101444688899998776666489999999767970895289999874978897199998
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~p~~s~tp~~~~~~P~lGeht~eIL~e~lG 359 (359)
T d1x74a1 321 ANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 359 (359)
T ss_dssp CSSSEEECCSSEESSSCCCCCCCCCCCCCHHHHHHHHTC
T ss_pred ECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 689114578878899998899999999789999997279
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=100.00 E-value=0 Score=27025.80 Aligned_cols=1 Identities=0% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~v~~~a~Gfa~~ttGG~~g~~~~Vtt~~eL~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1idka_ 1 VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDD 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97565574144578788897379938999999986289974999863480356644112333234565431101114443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~ 160 (359)
T d1idka_ 81 WCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDD 160 (359)
T ss_dssp HHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECS
T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCEEEECCCEEEEECCCEEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf 22235556763014532167770572799608861588499657468874682199979599568777787887588517
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~ 240 (359)
T d1idka_ 161 CDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240 (359)
T ss_dssp CEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCCCEEEECEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCEE
T ss_conf 86489980060357788635610578726620406523312234566556687332289862899924981577888401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 320 (359)
T d1idka_ 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGT 320 (359)
T ss_dssp CTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCCCCCEEESSCC
T ss_pred CCCCEEEEECCEEECCCCEEEECCCCEEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34305999876997762557835775158996618867767754467723733567777421244476443113354664
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~a~~v~~~V~~nAG~Gkl 359 (359)
T d1idka_ 321 FSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL 359 (359)
T ss_dssp CCCBCCTTGGGGTTSCCCCCCCGGGHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 366776521355665545768878977766434898879
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27024.96 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~l~~~~~~~~~r~~d~~fa~~~~~~~~~~~~l~~al~s~~~~~Gh~cl~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1w36d1 1 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 80 (359)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHTTCSEEETTTTTTGGGGSSSCCCCSSCCTTCSTH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCHHHH
T ss_conf 96899999998183568999999998558985899999999999839997627999751200244430222155558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~l~~~~~v~~~~~~~p~vl~~~~lyl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~A~~~a 160 (359)
T d1w36d1 81 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA 160 (359)
T ss_dssp HHHHHHSTTEESSSSCCSEEECSSEEEEHHHHHHHHHHHHHHTSCCBCCCCCHHHHHHHHHTTCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99987276656777888658778884047899999999999998637799983789999997465765663899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (359)
T d1w36d1 161 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 240 (359)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTT
T ss_pred HCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 70885999768988752169999999999875269828984375999999998887777645810445542013455789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~lILvGD~~QLppV~~G~vl~dl~~~~~~~~ 320 (359)
T d1w36d1 241 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 320 (359)
T ss_dssp SCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCC
T ss_pred HHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98763100067777543666541346533214489999999987259998999777221668788818999999773477
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~l~r~~~~~~~~~~~~~~~~i~d~l~~L~knyR 359 (359)
T d1w36d1 321 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 359 (359)
T ss_dssp CHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHCCCCCCC
T ss_conf 899999999985410001333334202172112545789
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=100.00 E-value=0 Score=27022.05 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 a~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~eL~~al~~~~PriI~~~gtid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1qcxa_ 1 AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98776676055688788897489938999999986289974999886681344556322334245554322222325332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~ 160 (359)
T d1qcxa_ 81 WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD 160 (359)
T ss_dssp HHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEES
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCEEEEECCCCEEEECEEEECCCCCCCCCCCEEEEEC
T ss_conf 22344556762035530267650784798749851588189746568886784489969098558777787897478617
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~ 240 (359)
T d1qcxa_ 161 SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV 240 (359)
T ss_dssp CCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEECCCCCCCCEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 88789982564456887537602677756865307616754101256567787400279861999925615887778606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~ 320 (359)
T d1qcxa_ 241 QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG 320 (359)
T ss_dssp CSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSCCCCCEEESCC
T ss_pred CCCCEEEEEEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 07844899941796767778824775189998158889887665564320304687554531245556400011335676
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------9
Q 001846 864 --------------------------------------V 864 (1006)
Q Consensus 864 --------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~t~~~a~~v~~~V~~~AG~GK 359 (359)
T d1qcxa_ 321 SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK 359 (359)
T ss_dssp CCCCBCGGGGGGGTTSCCCCCCCGGGHHHHHHHHSSTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 314688530046677663576899999987775289999
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26951.96 Aligned_cols=1 Identities=100% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 dRv~P~C~~f~~CGGC~~qh~~y~~Ql~~K~~~l~~~~~~~~~~v~~~~p~~YR~r~~~~v~~~~~~~~~~~Gf~~~~s~ 80 (358)
T d1uwva2 1 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 80 (358)
T ss_dssp TBCCCSCTTTTTBTTCSCTTBCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTSS
T ss_pred CCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
T ss_conf 98898999999485861008999999999999999862765676657888777415999845765889569989735884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~iV~i~~C~i~~~~i~~~l~~lr~~l~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (358)
T d1uwva2 81 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 160 (358)
T ss_dssp CEEECSCCTTBCHHHHHHHHHHHHHHTTCGGGGGEEEEEEEEETTEEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 06614125145577999999988754033445520399999831880899995266677789999975311363899940
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv 240 (358)
T d1uwva2 161 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 240 (358)
T ss_dssp SSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred CCEEEEEECCCCEEEECCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHCCCCCCEEEEC
T ss_conf 43367762487248960888999877133003303446779889875246788449995366665521003565279822
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tl 320 (358)
T d1uwva2 241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL 320 (358)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 47499999999848755324621342204543234455404675599679973479999999974999899992898998
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
|
T Consensus 321 aRDl~~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~Rv 358 (358)
T d1uwva2 321 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 358 (358)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC-
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf 87799998779767599997359998618999999969
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=100.00 E-value=0 Score=26948.97 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~g~l~~~G~~~~d~~G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRlpv~~~~~~~~~~~~~~~ 80 (358)
T d1ecea_ 1 AGGGYWHTSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSIN 80 (358)
T ss_dssp CCCSCCEEETTEEECTTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCC
T ss_pred CCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCC
T ss_conf 99970996099799999989999987667411345666667724799999999976998899347688746877777755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~ 160 (358)
T d1ecea_ 81 FYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLH 160 (358)
T ss_dssp CSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECS
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 33368111011699999999999997899066401356666888655688277999999999998864476536755320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 NEP~~~~~~~~~~~~~~~~~~~~~~~~~Ir~~d~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~H~Y 240 (358)
T d1ecea_ 161 NEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDY 240 (358)
T ss_dssp SCCCTTCBSSCCCTTTBHHHHHHHHHHHHHHHCTTSEEEEECBSEETTEECSTTTBCTTTTTSCCCCSSSSCEEEEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 33456776775413455899999999999850899589996546676665322566430432776678667658986414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~W~ 320 (358)
T d1ecea_ 241 ATSVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGADSFQWTFWS 320 (358)
T ss_dssp CTTTCCCGGGSCTTTTTTHHHHHHHHTHHHHHTTSSCEEEEECCCCCCSHHHHHHHHHHHHHTCCHHHHTTSSCEEEESC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78767753456630356677788889999998459709992678888999869999999999999998540181699973
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
|
T Consensus 321 ~k~~~~~~~G~~~~dw~~~~~~~~~~i~~~~~~~~~~~ 358 (358)
T d1ecea_ 321 WNPDSGDTGGILKDDWQTVDTVKDGYLAPIKSSIFDPV 358 (358)
T ss_dssp SCSCCTTTCCSBCTTSSSBCHHHHHHHGGGCCCCCCCC
T ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 77777887640169888878366532030213568989
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26948.88 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~v~t~~nlk~~L~~A~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~ 80 (358)
T d1dosa_ 1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG 80 (358)
T ss_dssp CCGGGTCCSEECCTHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHH
T ss_conf 94663346776757999999999998795699878698999999999999968998999061688770764156668767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~a~~v~~~a~~~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~Tk~v 160 (358)
T d1dosa_ 81 AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKY 160 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88888898999999999837997899657652146778887788899999982777776556778857789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l 240 (358)
T d1dosa_ 161 LERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTI 240 (358)
T ss_dssp HHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHH
T ss_pred HHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
T ss_conf 99985537768984336404567753210102330599899999999876467651565432614553478876677014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdlr~a~~~~ir~~~~~n~~~~~~~~~~~~~~ 320 (358)
T d1dosa_ 241 LRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGE 320 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf 69999999987289986534120588897688999999819848961719999999999999984846541113675444
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
+
T Consensus 321 ~~~~k~~fDPrk~l~~a~~am~~~v~~~~~~fgs~nkl 358 (358)
T d1dosa_ 321 DQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358 (358)
T ss_dssp EEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57777767908889999999999999999982897779
|
| >d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Escherichia coli, cephalosporinase [TaxId: 562]
Probab=100.00 E-value=0 Score=26947.08 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~p~~~~~~v~~~i~~~~~~~~ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~lv~~G~l 80 (358)
T d2hdsa1 1 APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEI 80 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 96789999999999999838998699999999999999688602566988999997863045999999999999755986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ld~~v~~ylp~~~~~~~~~iTir~LLshtsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie 160 (358)
T d2hdsa1 81 KLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAV 160 (358)
T ss_dssp CTTSBHHHHCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 42300010000002321101455665026768980430121222089999876175335898426743541110013231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~tg~~~~~~~~~~i~~PLgm~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~f~~~~l~~~~~ 240 (358)
T d2hdsa1 161 KPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDI 240 (358)
T ss_dssp GGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCC
T ss_conf 13699821202667775059642527898467315102433686412344545578764623899999999998589987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~G~~~G~~ 320 (358)
T d2hdsa1 241 NEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFG 320 (358)
T ss_dssp SSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCTHHHHTSTTSSSSCCCEECEEEEEEECCCSSEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
T ss_conf 86888888877632302368766555402035667753234676655211234444556777777850797345267425
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
=
T Consensus 321 s~~~~~Pe~~~~ivvltN~~~~~~~~~~~~~~il~al~ 358 (358)
T d2hdsa1 321 SYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNALQ 358 (358)
T ss_dssp EEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999987997999997799998789999999999759
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=100.00 E-value=0 Score=26945.06 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~dpr~dP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~ 80 (358)
T d1jkma_ 1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETS 80 (358)
T ss_dssp CHHHHCTTCCTTTCTTSCHHHHHHHHTTTTTSCCCCCSSCTTSCHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99888987786779998999999997536665677998783315599999987647999988755454269988885079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~i~~~dg~~i~~~iy~P~~~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~pe~~~p~ 160 (358)
T d1jkma_ 81 TETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHPFPS 160 (358)
T ss_dssp EEEEECTTSCEEEEEEEEETTCCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTEECCTTH
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCH
T ss_conf 99996789988899999417888898749996387104066542221067888875100133000001246565677733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 240 (358)
T d1jkma_ 161 GVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSL 240 (358)
T ss_dssp HHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCH
T ss_conf 56777888889987232468754034444672679999999976527876542223455211366576411110234210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~~e~~~~~~~L~~aGv~v~~~~ 320 (358)
T d1jkma_ 241 VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARV 320 (358)
T ss_dssp HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 00234445516666677642775577457300234530110258999899987887787999999999998799589999
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
=
T Consensus 321 ~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 358 (358)
T d1jkma_ 321 NIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR 358 (358)
T ss_dssp ETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79896463542466697899999999999999897569
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=100.00 E-value=0 Score=26946.58 Aligned_cols=1 Identities=0% Similarity=-2.553 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 GFID~HtH~D~~~~~~p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~~~~~N 80 (358)
T d1m7ja3 1 GFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVN 80 (358)
T ss_dssp CEEESSCCCTTHHHHCTTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSE
T ss_pred CCEECCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 92522788845532597986414699764888177777145775442005778504777686789999999973587654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 va~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~ 160 (358)
T d1m7ja3 81 AACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHM 160 (358)
T ss_dssp EEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 03541455554415583023578899999999999999658765235775441035898999999988886098346653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 r~~~~~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~~~ 240 (358)
T d1m7ja3 161 RDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAG 240 (358)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf 25663178888999999997298657513345777652568999999999863798641215854134522234444133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~~~igSDgga~~~~~hpr~~gt 320 (358)
T d1m7ja3 241 RTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGT 320 (358)
T ss_dssp CEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHH
T ss_pred CHHHHCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 30110266676542574999998839987887888742210010589999999983999228767665789958888661
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
=
T Consensus 321 f~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~dRG 358 (358)
T d1m7ja3 321 FPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERG 358 (358)
T ss_dssp HHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999567881789999999987999983987899
|
| >d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase A, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26943.58 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~Yy~~W~~y~~~~~~~~I~~~~~THi~YAFa~v~~~~~~~~~~~~~~~~~~ 80 (358)
T d1edqa2 1 TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQ 80 (358)
T ss_dssp TTCTTSCCCCCCCCTTCCCBCCCSSCEEEEEEEGGGGSTTCCCGGGSCGGGCSEEEEEEECBCCCTTTSGGGGGSTTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99754688779778889888789998999995952023899992469986797699950772698874654222333222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~LK~~~p~lKvllSiGGw~~s~~~~~~a~~~~R~~ 160 (358)
T d1edqa2 81 ALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR 160 (358)
T ss_dssp HHHHHTTTCCTTSBCCSCHHHHHTSCBTTBCSTTCSSCHHHHHHHHHHHHCTTCEEEEEEECSSSCGGGGGTTSHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 22224466777615612714432033467664344344289999999974899769999989987888602358789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 Fi~svv~~l~~y~~fDGIDIDWEyP~~~g~~~~~~~~~D~~nf~~Ll~eLR~~l~~~~~~~~~~~~ls~a~~~~~~~~~~ 240 (358)
T d1edqa2 161 FVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDK 240 (358)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTSCSSCTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECSHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 99999999998353786131124323345778778978998999999999999887643317742025650476445413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~l~~~vD~inlMtYD~~G~w~~~~~g~~t~l~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGRs~~~K~ 320 (358)
T d1edqa2 241 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMDARSVQAKG 320 (358)
T ss_dssp SCHHHHGGGCSEEEEECCCSSCTTCSSSCCCSSCSSCCTTCTTCSCCHHHHHHHHHHHTCCGGGEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHH
T ss_conf 21777863378898860245577787887877888887667877652999999999878998896999685479999887
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------9
Q 001846 864 -------------------------------------V 864 (1006)
Q Consensus 864 -------------------------------------V 864 (1006)
-
T Consensus 321 ~y~~~~~lgG~~~W~~~~D~g~ll~a~~~~l~~~~~~~ 358 (358)
T d1edqa2 321 KYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAGVQ 358 (358)
T ss_dssp HHHHHHTCCEEEEECGGGCCSHHHHHHHHHTTCCBSCC
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 78862897439887156786289999998647854679
|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26875.55 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~w~Fd~f~l~~~~~~~~L~~~~~~if~~~~l~~~f~i~~~~l~~Fl~~v~~~Y~~~~nPYHN~ 80 (357)
T d1taza_ 1 VGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQ 80 (357)
T ss_dssp CCCCCCHHHHHHHTTTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHHHTTTCCSSSSH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99889899999986455699980130101389829999999999878376439899999999999998457789875359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYnd~SvLEnhH~~~~~~lL~ 160 (357)
T d1taza_ 81 IHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQ 160 (357)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999999635632338999999999999988248899635799863887888639987789999999999980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~i~~~l~~~~~~~~r~~ii~~ILaTDm~~H~~~l~~~~~~~~~~~~~~r~~~~~~lik~ADis~~~rp~~~~~~W~ 240 (357)
T d1taza_ 161 DDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWT 240 (357)
T ss_dssp SGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 61000103899899999999999998222267689999999999974114109999999998623554236779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~l~~Ef~~Qgd~E~~~gl~~sp~~dr~~~~~~~~QigFi~~iv~Plf~~l~~~~p~~~~p~~~~~~~n~~~~~~~~~~~ 320 (357)
T d1taza_ 241 KALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQP 320 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998899845999987668754320788999999999999999998770653688899999999899987641
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~~~~~~a~ 357 (357)
T d1taza_ 321 SLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 357 (357)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2234557876234321314556545438999987439
|
| >d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=100.00 E-value=0 Score=26875.53 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~el~~~a~~~~~~GKGilAADeS~gT~~Krl~~iGventEenr~~~R~~l~tsp~~~~ 80 (357)
T d2qapa1 1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 80 (357)
T ss_dssp CCEEEEEGGGSGGGCSCCCTTHHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGG
T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 96121111037775445847899999999998079986998358998277789876999978999999998847987555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~IsGvILfeeTm~q~~~~g~~~~~ll~~kGIVPgIKVDkGl~~~~~G~~~ek~t~gLD~L~~R~~ey~~~Ga~faKwRsV 160 (357)
T d2qapa1 81 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNV 160 (357)
T ss_dssp TEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCHHC
T ss_conf 44689812898732302799779999847981544247751478789974642625677999877754233300310100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 i~i~~~~ps~~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vte~vl~~~~~~l~~~~V~Leg~lLKp 240 (357)
T d2qapa1 161 YKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKP 240 (357)
T ss_dssp ECCBTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 43666775044466568999999999997497631051233224564688899999999999998875314445776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 nMv~~G~~~~~~~~~e~va~~tv~~l~~tvP~~VpgIvfLSGGqS~eeAt~~LnaiN~~~~~~pw~lsfSfsRALQ~s~L 320 (357)
T d2qapa1 241 NMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 320 (357)
T ss_dssp CCCCCCTTSSCCCCHHHHHHHHHHHHHHHSBTTCCEEEECCTTCCHHHHHHHHHHHTTCCSCCCSEEEEEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 42224543345688556302356665214797787113147886789999999997424578998589863397608999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
=
T Consensus 321 k~W~g~~env~~aQ~~~~~Ra~~ns~A~~G~y~~~~e 357 (357)
T d2qapa1 321 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDD 357 (357)
T ss_dssp HHHTTSGGGHHHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9857974639999999999999868986688687789
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=26872.81 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~f~~~~f~l~~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyf 80 (357)
T d2b61a1 1 SVQNVVLFDTQPLTLMLGGKLSYINVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYF 80 (357)
T ss_dssp CCEEEEESSSSCEECTTSCEECSEEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCE
T ss_pred CCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 97428998479825689986589569999623337889988998488776653335678887588712799766777518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 VI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~ 160 (357)
T d2b61a1 81 FISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQANQWAIDYPDFMD 160 (357)
T ss_dssp EEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHHHHHHHSTTSEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 99855667766667767889888997776422110689999999999871866488884040788899999874267774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~ 240 (357)
T d2b61a1 161 NIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWG 240 (357)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTS
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 33244456433235788878899999828777788755688830689999999886404789999874522234433236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~ 320 (357)
T d2b61a1 241 DYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQ 320 (357)
T ss_dssp CCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 53569999999889887607999999999986632654333338999862699889998477506598999999999986
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~v~~~~I~S~~GHdafL~e~~~~~~~I~~fL~~~ 357 (357)
T d2b61a1 321 SGVDLHFYEFPSDYGHDAFLVDYDQFEKRIRDGLAGN 357 (357)
T ss_dssp TTCEEEEEEECCTTGGGHHHHCHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6998699997999875554769899999999997359
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=0 Score=26872.32 Aligned_cols=1 Identities=100% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~ 80 (357)
T d1gcya2 1 DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFW 80 (357)
T ss_dssp CCCCCCTTCCCCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCH
T ss_conf 95556898605358987788624468788777747999999789999739999996947547866777777888788470
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (357)
T d1gcya2 81 HDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD 160 (357)
T ss_dssp SSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTST
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30656866799999999999999638737898700354788875100465688765456677778888878555445665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T d1gcya2 161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ 240 (357)
T ss_dssp TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCHHHH
T ss_conf 54477987999999999998777528987999515308999999998501788234543225763011011210110456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~a 320 (357)
T d1gcya2 241 IIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA 320 (357)
T ss_dssp HHHHHHHHHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 66767640344310035554300456999999985076656645257740477755424457864334287999999999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
|
T Consensus 321 lllt~pGiP~IyyGde~d~g~~d~i~~li~iRk~~~i 357 (357)
T d1gcya2 321 YILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGV 357 (357)
T ss_dssp HHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9995799127970785467886999999999976879
|
| >d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thiobacillus ferrooxidans [TaxId: 920]
Probab=100.00 E-value=0 Score=26870.56 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 M~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~dail~Gai~~p~~~~ 80 (357)
T d1a05a_ 1 MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDA 80 (357)
T ss_dssp CCEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97899977678669999999999999987708985999997552425441994899999999973065406656887567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~lR~~ldlyanvRP~k~~pg~~~~~pl~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (357)
T d1a05a_ 81 YPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (357)
T ss_dssp SCGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEE
T ss_conf 78555666477889975695588777640367666789886667761399987455643357753221267764899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~t~~~~~ri~~~Af~~a~~r~k~vt~v~K~ni~~~~~lf~~~~~eva~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (357)
T d1a05a_ 161 VYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240 (357)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 96289999999999988645786488885366411368999999999865898278751799999998745456567851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~a~fE~~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~Av 320 (357)
T d1a05a_ 241 GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAV 320 (357)
T ss_dssp CHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 17888878899988735765410300068730102456878000589865949999999999972089879999999999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
=
T Consensus 321 ~~~i~~g~~T~Dlgg~~t~~~~T~e~~daV~~~l~~~ 357 (357)
T d1a05a_ 321 QRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNALNLK 357 (357)
T ss_dssp HHHHHTTCCCGGGCCTTSCCCCHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999769967566999998768999999999987469
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=100.00 E-value=0 Score=26869.74 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~p~~~~~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 80 (357)
T d1t1ga_ 1 AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE 80 (357)
T ss_dssp CCCEEECHHHHHHHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHHHHHTTCCCCCEEEEESTTCCCCCCSCTTSTHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99874789999998787889898897899997688778688987775058878998633799999887876556443005
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~d~~~~~GvAp~A~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~ 160 (357)
T d1t1ga_ 81 LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA 160 (357)
T ss_dssp HHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 77643125414676998741247884589999998741149808965666576766543489998766532157867999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~p~~~~~~~~~~~~ 240 (357)
T d1t1ga_ 161 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSA 240 (357)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCEEEEEECBCHHHHCBCCCEECSSSCCCGGGTTSCCCCCS
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84168743211344544201135776236654023678775445201266666433447744121367523354234556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g 320 (357)
T d1t1ga_ 241 NPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEG 320 (357)
T ss_dssp STTCCCCCEECSEEEECCTTEEEEEEETTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSC
T ss_pred CCCCCCCCEECCEECCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCC
T ss_conf 67777773313321135787742774699666168831687999999999976405886765999986260133124326
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~~l~p 357 (357)
T d1t1ga_ 321 NNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP 357 (357)
T ss_dssp BCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7788888776567668988846741549999874088
|
| >d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: CCP-like domain: Fungal peroxidase (ligninase) species: Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=26869.46 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 a~c~~g~~~~na~cc~~~~v~~dlq~~~~~~~c~~~A~~~lRL~FHDcfv~~~~~g~~~~gGcDgSill~~~~E~~~~~N 80 (357)
T d1yyda1 1 AVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSAN 80 (357)
T ss_dssp CBCTTSCBCSCGGGTTHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 92899753677435467999999999985587507899999999824105103567678999781302178644678665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~Gld~i~~~~~~~~~~~~~VScADiialAardAV~~~~GGP~~~v~~GR~Da~~a~~~~~LP~p~~~~~~l~~~Fa~~~G 160 (357)
T d1yyda1 81 NGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGG 160 (357)
T ss_dssp TTTHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHTSTTCCCCCCEECCCSCCCCCCTTCSCCTTCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88799999999999637998999999999999997306897204248888642234446789864569999999766512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 lt~~dmVaLsGAHTIG~ah~~~~~~~~~~~~~tp~~fDn~~f~~ll~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~L~ 240 (357)
T d1yyda1 161 FTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240 (357)
T ss_dssp CCHHHHHHHGGGGGGCEESSSSTTCSCEESSSCTTSCSSHHHHHHTBCCCBCSSCSCCTTEECBSCCCCBTTBCCCCEEH
T ss_pred CCHHHHHEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 88377611323331000245677754333466656301799999986368988888887601377744440102466248
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 SD~~L~~D~~T~~~V~~yA~n~~~F~~~Fa~AmvKms~lG~~~~~l~dcs~v~p~~~~~~~~~~~~p~~~~~~d~~~~~~ 320 (357)
T d1yyda1 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCP 320 (357)
T ss_dssp HHHHHHHSTTTHHHHHHTTTCHHHHHHHHHHHHHHHTTTTSCGGGSEECGGGSCCCCCCCCCCCCBCTTCCGGGBCCCCT
T ss_pred HHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99988419889999999965999999999999999997699953144577657899887788876789998676553055
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (357)
T d1yyda1 321 SERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA 357 (357)
T ss_dssp TSCCCCCCBCSCSSCCCCCSSTTSCSCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999887789985334457899877689756678999
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=0 Score=26872.38 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lPK~eLH~HL~Gsi~~~~l~~la~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 80 (357)
T d2amxa1 1 EIKFLKKEDVQNIDLNGMSKKERYEIWRRIPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLA 80 (357)
T ss_dssp SCCCCCHHHHTTCCGGGCCHHHHHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHTTCCTTSCHHHHHHHHCCCSTTCCHH
T ss_pred CCCHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 93455522555687000470789999983908898667878999999999999729799999499999874567626599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~f~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~v~y~Elr~~p~~~~~~~g~~~~~v~~~i~~g~~~a~~~~~~~~~~~ 160 (357)
T d2amxa1 81 EFIRKAISVSDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVA 160 (357)
T ss_dssp HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999878778733899999999999999998415161133454324545676457799999999999987439845898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~a~~~~~~vvGidl~g~e~~~~~~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~~l 240 (357)
T d2amxa1 161 LICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINIL 240 (357)
T ss_dssp EEEECCCCCSHHHHHTTTHHHHHTTTTEEEEECCSSCCCCGGGHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 63210266125557999999996388657312467766623469999999831876443455458999747899999704
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~RIgHGv~~~~d~~l~~~l~~~~I~leiCPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f~t~ls~ey~~~ 320 (357)
T d2amxa1 241 NVERIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKL 320 (357)
T ss_dssp CCSEEEECGGGGGCHHHHHHHHHHTCEEEECHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHEECCHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHCCCHHHHHHHH
T ss_conf 97313652430058788998887185389887500242358970028999999889959995899412178879999999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
.
T Consensus 321 ~~~~~ls~~el~~l~~nsi~~sF~~~~~K~~l~~~~~ 357 (357)
T d2amxa1 321 YIHLNFTLEEFMIMNNWAFEKSFVSDDVKSELKALYF 357 (357)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9981989999999999999986899999999998659
|
| >d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin species: Mucor pusillus [TaxId: 4840]
Probab=100.00 E-value=0 Score=26866.58 Aligned_cols=1 Identities=0% Similarity=-2.420 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~ 80 (357)
T d1mppa_ 1 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT 80 (357)
T ss_dssp CCEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred CCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 95445525458798899999982899599999948975428714899998553589878874587622679445886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 g~~~G~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 160 (357)
T d1mppa_ 81 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI 160 (357)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSS
T ss_pred CCEEEEEEEEECCCCCCEECCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 71789998350212660488688999994045423215655433211235545776422244688788789999861565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~ 240 (357)
T d1mppa_ 161 SSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFI 240 (357)
T ss_dssp SSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEE
T ss_pred CCCEEEEEECCCCCCCEEECCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCCEEEECCCCCCC
T ss_conf 55169998336899963987531766727730578721477874368998706998875765328973148613674236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 lp~~~~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~c~~~~~~~~ 320 (357)
T d1mppa_ 241 APSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG 320 (357)
T ss_dssp EEHHHHHHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHEEEEECCCCCEEEEEECCCC
T ss_conf 98999999999856775346885102420144568507999811565356679998659928996589988999984799
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
=
T Consensus 321 ~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~~~~~ 357 (357)
T d1mppa_ 321 GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYEND 357 (357)
T ss_dssp SSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTCCC
T ss_pred CCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 9999945697397999998999999999998678998
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=100.00 E-value=0 Score=26866.43 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~p~~a~~~~~l~~~G~~~l~d~~G~~v~lrGv~~~~~~w~~~~~~~~~~~~l~~~~G~N~VRlp~~~~~~~~ 80 (357)
T d1g01a_ 1 PAGMQAVKSPSEAGALQLVELNGQLTLAGEDGTPVQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRLAMYIGENGY 80 (357)
T ss_dssp CTTCTTCCCHHHHCSCEEEEETTEEEEECTTSCBCCCEEEEESCHHHHGGGCSHHHHHHHHTTSCCSEEEEEEESSSSST
T ss_pred CCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEEEEECCCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 98544567965346788599738589999999999999885676200465568999999998649977988636557887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~ld~~V~~a~~~GiyVIlD~H~~~~~~~~~~~~~~~~~~W~~iA~ry~~~~~~~~v~~el~NEP~~~~~~~~ 160 (357)
T d1g01a_ 81 ATNPEVKDLVYEGIELAFEHDMYVIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIWELANEPSPNNNGGP 160 (357)
T ss_dssp TTCTTHHHHHHHHHHHHHHTTCEEEEEEECCSSSCTTSGGGTTHHHHHHHHHHHHTTCTTGGGEEEECCSCCCSCCTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 44989999999999999978988998613268888880355666779999999975476237999987516353567654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~IR~~~~~~iiv~~~~w~~~~~~~~~~~~~~~nvvys~H~Y~~~~~~~~~~~~~~~~~~ 240 (357)
T d1g01a_ 161 GLTNDEKGWEAVKEYAEPIVEMLREKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVHFYTGSHGASHIGYPEGTPSS 240 (357)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHTCHHHHHHSCCSSSSEEEEEEEETTTSCCCCCCCCTTCCGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 56676136899999999999999853993499804876665200013557999779998872675677667777566447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~g~Pv~vgEfG~~~~~~~~~~~~~~~~~~~~~~~~~~isw~~W~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
T d1g01a_ 241 ERSNVMANVRYALDNGVAVFATEWGTSQANGDGGPYFDEADVWLNFLNKHNISWANWSLTNKNEISGAFTPFELGRTDAT 320 (357)
T ss_dssp GCCCHHHHHHHHHHTTCCEEEEEEESSBTTTBSCCCHHHHHHHHHHHHHTTCCEEEEEECCSSSTTCSBCCCCTTSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999997699889983377678887876789999999999974993589957588776433067665566754
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
-
T Consensus 321 ~~~~~~~~~w~~~~l~~sG~~v~~~l~g~~~~~~~~~ 357 (357)
T d1g01a_ 321 DLDPGANQVWAPEELSLSGEYVRARIKGIEYTPIDRT 357 (357)
T ss_dssp CSSCCTTCCCCGGGBCHHHHHHHHHHHTCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5566667888765615467999998536778885789
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26865.72 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 98899968886899999999997869899997897555556688887403303897599982067979988887525987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK 160 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89985203553446559999999999999999999998489988689999845651889888958999999988699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~ 240 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMML 240 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCEEECHHHHHHHHHH
T ss_conf 99999999999996997899996454599877677714789999999838972699799980444443044878999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 320 (357)
T d1db3a_ 241 QQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLL 320 (357)
T ss_dssp SSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCC
T ss_pred HCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 27899759978998164599999999983976321455331000233211222433566760376155357886446404
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------9
Q 001846 864 ------------------------------------V 864 (1006)
Q Consensus 864 ------------------------------------V 864 (1006)
-
T Consensus 321 ~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk~~ 357 (357)
T d1db3a_ 321 GDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (357)
T ss_dssp BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 4889999997998689899999999999999970129
|
| >d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Conserved core of transcriptional regulatory protein vp16 superfamily: Conserved core of transcriptional regulatory protein vp16 family: Conserved core of transcriptional regulatory protein vp16 domain: Conserved core of transcriptional regulatory protein vp16 species: Herpes simplex virus type 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=26806.49 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~r~psPp~~~sp~~Ly~rLl~eL~F~eGp~Lls~le~wNeDLFSclP~n~dLY~~~~~LSt~~~eVi~~~~~~~p~~~~i 80 (356)
T d16vpa_ 1 SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYVPERTQI 80 (356)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHTCTTHHHHHHHHHHCCCCCSTTSCCCGGGGTTCGGGCSCHHHHHHHHHHCCCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99998988789799999999873998517899999984205550377874676531055389899999876179987750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 dL~ahG~~~~P~~Pa~~eeLP~Yv~avq~fF~sELrAREe~Y~~Ll~~YC~AL~~yLr~sa~~~~r~~~~~~~~~~~~~~ 160 (356)
T d16vpa_ 81 DIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEM 160 (356)
T ss_dssp CTTCCCSSCCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 01478998899999882353899999999999999998999999999999999999999887751310344541679999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~rq~i~~rYYRE~arLArllylHLYls~tRevswrl~A~Q~~~q~vF~~L~y~W~q~RQf~ClFhPvlfnhGvV~leg~p 240 (356)
T d16vpa_ 161 LRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVP 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEESCSHHHHSSCCSCSBCCSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEECCCEEEECCEEEECCCC
T ss_conf 99999999999999999999999999999999999999986132634605740113432367535335417635667987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 L~a~~Lr~~Ny~R~eLGLPlvR~~lvEE~~~pL~~~P~fs~~~pRssGyl~~~IraKmeaYS~~hp~~~~~~~~dH~YaR 320 (356)
T d16vpa_ 241 IEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSR 320 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCBCTTTSCTTSCSCCCCCCCTTSCCHHHHHHHHHHHHHTSTTC-----------------
T ss_pred CCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 88899988889998718840110100468987425886556785305689999999864420368888875444576447
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
+
T Consensus 321 ~~~~~nYGst~eaml~~~~~~~p~~~~~~~~r~~~~ 356 (356)
T d16vpa_ 321 APTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL 356 (356)
T ss_dssp ----------------------------CCCEEEEC
T ss_pred CCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 888888773232101699999635532234321359
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26796.54 Aligned_cols=1 Identities=0% Similarity=0.171 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~ 80 (356)
T d1r3sa_ 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV 80 (356)
T ss_dssp CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99764489999975998999998888445425889999871289999855999999998448986795425622442101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~ 160 (356)
T d1r3sa_ 81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG 160 (356)
T ss_dssp HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf 34228635644889866776433202332101100002144899999999998735565663032031888999872134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~ 240 (356)
T d1r3sa_ 161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240 (356)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 21378898876303577889999999988999999860566540203520121357888888899999999999875101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~ 320 (356)
T d1r3sa_ 241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP 320 (356)
T ss_dssp TTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 24777302101044787888874248561254235799999998489832882888899859999999999999998189
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
=
T Consensus 321 ~~~I~nlGhGI~p~tp~env~a~v~~vr~~~k~~~~ 356 (356)
T d1r3sa_ 321 HRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQ 356 (356)
T ss_dssp SSEEEEESSCCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 994896999759899999999999999996887459
|
| >d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=100.00 E-value=0 Score=26793.75 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~w~~~~~g~ee~~~~~l~spp~g~~l~s~~gd~~gf~~~dl~~p~~~~~~p~~~~~~~id~a~~~p~~ivr~G~~~~ 80 (356)
T d2ebsa2 1 WAPSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSIDAAGNFPNVVVRAGSSGH 80 (356)
T ss_dssp CCCCEEECCTTCBCCBEEEEECCSSSSSEEEEESSSBCBEESCTTSCCCBCCSSCCSEEEEEEECSSCTTCEEEEEECCC
T ss_pred CCCCCEECCCCEEHHHEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHEEEHHHCCCEEEEEECCCC
T ss_conf 99854576578010000015758999810688864785597458887535268885640120104118956999967788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~StDgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~ 160 (356)
T d2ebsa2 81 EYDSACARGAYATDGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKA 160 (356)
T ss_dssp CBTTBCTTEEEESSSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCS
T ss_pred CCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCCC
T ss_conf 78888872799840522442787688886566446646999458993078731467886449970797113876777888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~i~~d~~~~~~~Ya~~~g~ly~StDgG~TW~~~~~~~~~~~~~~~~v~p~~~g~v~v~~~~~Gl~~StDgG~TWt~i 240 (356)
T d2ebsa2 161 QTANVLSDKVQDGTFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDFGASFTRV 240 (356)
T ss_dssp CCSCEEECSSSTTCEEEEETTEEEEESSTTSEEEECCBTCCCCCCCCCEECTTSTTCEEEEETTTEEEEESSTTSBCEEE
T ss_pred CCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCEEEEC
T ss_conf 73189996767965785046319994787654532256775454036888741699502112445259922776348981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~~~~~~~GvyrS~D~G~TW~~Ind~~~~~g~~~~i~~Dp~~~grvYv 320 (356)
T d2ebsa2 241 GTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKPGSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYL 320 (356)
T ss_dssp SSCEEEEEEEEEEC---------CCEEEEEEEESSTTSCSEEEEESSTTSSCEECCCTTSCTTCEEEEEECTTSTTCEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEECCCCCCCEEEE
T ss_conf 47888764013333566454678875599999864798076999969997934995997777752289718976998999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
.
T Consensus 321 gT~GrGi~y~~~~~~~s~~~~~~~~~~~~~~~~~~~ 356 (356)
T d2ebsa2 321 GTNGRGIVYADLTNKKSNEEKSTAKCANGQKGTHCY 356 (356)
T ss_dssp EEBSSCEEEEECCC----CCCCEEEETTCCSSSCCC
T ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 968876799967788577887420127888887679
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=0 Score=26793.60 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~ 80 (356)
T d1l0wa3 1 TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV 80 (356)
T ss_dssp CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 96962685445654456698887413365117887999999999999999999988898999898124677764432002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~ 160 (356)
T d1l0wa3 81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFRE 160 (356)
T ss_dssp ECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22113201117772856777775232368679982123522268754045668877666788878999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~ 240 (356)
T d1l0wa3 161 ALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVR 240 (356)
T ss_dssp HTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCB
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCE
T ss_conf 72877778977511776677870474767777566542036653113110012233437743687665100103888620
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Ird 320 (356)
T d1l0wa3 241 ALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 320 (356)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGG
T ss_pred EEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHH
T ss_conf 21230233878862107871748999999999767832357789999999667989962377709999999809995885
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
-
T Consensus 321 vi~FPR~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1l0wa3 321 VIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP 356 (356)
T ss_dssp GSSSCCCTTSCBTTTTBSEECCHHHHHHHTEEECCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECCC
T ss_conf 346899999998667899989999998668462185
|
| >d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26793.58 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 k~~tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l 80 (356)
T d1lbqa_ 1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV 80 (356)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSSHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99659999878899986899999999758986446878899998656475687999999998189881089999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~~~~ 160 (356)
T d1lbqa_ 81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV 160 (356)
T ss_dssp HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSEEEE
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 98850233435772168873146320888999998579864378844234427888899999999988750102566426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 I~~~~~~p~yI~a~a~~i~~~l~~~~~~~~~~~~LlfS~HgiP~~~~~~gdpY~~q~~~t~~~v~~~l~~~~~~~~~fQS 240 (356)
T d1lbqa_ 161 IDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQS 240 (356)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 44644312279999999999999767544567379995477653333327874689999999876430566645777640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 r~g~~~WL~P~t~~~le~l~~g~k~v~v~p~gFvsD~lETL~Eidie~~~~~~gg~~f~~vp~lN~~p~fi~~La~lV~~ 320 (356)
T d1lbqa_ 241 QVGPKPWLGAQTAEIAEFLGPKVDGLMFIPIAFTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKS 320 (356)
T ss_dssp CCSSSCBCSCBHHHHHHHHGGGCSCEEEECTTCSSCCHHHHTCCCCCCCTTCTTGGGEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 45677777875599999840489748998885242234449887777999971887499868998998999999999999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
=
T Consensus 321 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1lbqa_ 321 HLQSNQLYSNQLPLDFALGKSNDPVKDLSLVFGNHE 356 (356)
T ss_dssp HHHHCCSSCTTHHHHHHHCCCSSCCSCHHHHSBCCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 865685567446644334768871118698616899
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=26793.12 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~ 80 (356)
T d1jnra2 1 VYYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG 80 (356)
T ss_dssp CCCCSSCCCCCGGGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSS
T ss_pred CCCCCCHHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97775033213556776687649899898889999999999978867697999967889997359877899974233323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~Ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1jnra2 81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAA 160 (356)
T ss_dssp SBSCCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf 56766899999999998606876188999988741123556876097742013323322333100246640788999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tG 240 (356)
T d1jnra2 161 KMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTG 240 (356)
T ss_dssp HHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBS
T ss_pred HHHHCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86304517899999887653024665214568877404837984078799917875331357777644564447987577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 dG~~ma~~aGa~l~~~~~~q~~p~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~ 320 (356)
T d1jnra2 241 SGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRF 320 (356)
T ss_dssp HHHHHHHHHTCCEESCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 09999998534524787247616645782432456567664004352121420017766557355655412328999999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
-
T Consensus 321 i~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ 356 (356)
T d1jnra2 321 ILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLS 356 (356)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 972899887788999999988776899998507999
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=0 Score=26792.92 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~ 80 (356)
T d1rkxa_ 1 INNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP 80 (356)
T ss_dssp CCHHHHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCHH
T ss_conf 97344188989997888779999999999779989999789986177776640146876998405685760023430202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k 160 (356)
T d1rkxa_ 81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSK 160 (356)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44444421565653246775353322334035666643045543222222212234565433322234568988432432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a 240 (356)
T d1rkxa_ 161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG 240 (356)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 33204566776521342010355733774267776488855143799999999718996688621342122123342200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~~ 320 (356)
T d1rkxa_ 241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWN 320 (356)
T ss_dssp HHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCCCC
T ss_conf 23455540345654444332222223322110245666787489862797179999875765686999999879986888
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
=
T Consensus 321 l~egi~~ti~wyk~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1rkxa_ 321 LNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999999998748998998999999971589
|
| >d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Bacillus coagulans [TaxId: 1398]
Probab=100.00 E-value=0 Score=26792.72 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 m~~rI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~e~i~~~dail~Gav~~p~~~ 80 (356)
T d1v53a1 1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD 80 (356)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 97079998878765999999999999998624997499999556899997499288999999986082799256798867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~~~~~~~lR~~ldlyanvRPv~~~~gi~~~~p~~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~~~~~ 160 (356)
T d1v53a1 81 HNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL 160 (356)
T ss_dssp SSCGGGCHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESSTTCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf 78988583021689998708725566665430344579977667788239996046766065305330224652002200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~t~~~~~ri~r~af~~A~~r~kkVt~v~K~nv~~~~~~~~~~~~eva~eyp~I~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (356)
T d1v53a1 161 AYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCEEEC
T ss_conf 02321430034577767874598465775254102450586999999836898699998836678898722344664532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~~s~ni~~d~~a~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~A 320 (356)
T d1v53a1 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKA 320 (356)
T ss_dssp CHHHHHHHHHHHTTTTSCTTSCEEEEECSSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 67888888899988736763111200268731463378887234448996592999999999998637987999999999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
=
T Consensus 321 v~~~l~~g~~T~Dl~~~~gg~~~T~e~~dav~~~L~ 356 (356)
T d1v53a1 321 VDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356 (356)
T ss_dssp HHHHHHTTEESSSSCCTTCEECCHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCC
T ss_conf 999998599473556679970379999999998429
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=100.00 E-value=0 Score=26791.98 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
.
T Consensus 1 f~~RG~mlD~aR~f~~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~i 80 (356)
T d1jaka1 1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 80 (356)
T ss_dssp CSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98438678767998599999999999998299079999864887610016873465436756667788885289999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 v~ya~~rgI~viPEid~PgH~~~~~~~~pel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lfp~~~~Hi 160 (356)
T d1jaka1 81 VRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHI 160 (356)
T ss_dssp HHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEEC
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999729868644777304679987584002568998644466778865566856789999999999987515507986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 GgDE~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~e~~~~~~~~~~vV~~W~~~~~~~~~~~~~~~~~~~G~~vI~s~~~ 240 (356)
T d1jaka1 161 GGDEAHSTPKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPAD 240 (356)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGSCCCTTCEEEECCCTTSCHHHHHHHHHHHHTTCEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf 00244444078999999999999998599458740013678988867887730356763267999999809969977870
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~Yld~~~~~~~~~~~~w~~~~~~~~~y~~~P~~~~~~~~~~~ilG~e~~lWtE~i~~~~~~~~~~~PR~~AlAEr~Ws~ 320 (356)
T d1jaka1 241 RTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 320 (356)
T ss_dssp TTCTTBCSSTTCSSSBCTTCCCCHHHHHSCCGGGSSTTCCGGGEEEEEEEECCTTCCSHHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHEECCCCCCCCCCCCCCCCEEEHHHEEECCCCCCCCCCCHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 12020366789987753345122311450366567874521056478855054777998999988775599999998688
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
-
T Consensus 321 ~~~~d~~~f~~RL~~~~~~l~~~Gv~y~r~p~~pw~ 356 (356)
T d1jaka1 321 ASTHDWDTYKVRLAAQAPYWEAAGIDFYRSPQVPWT 356 (356)
T ss_dssp GGGCCHHHHHHHHHTTHHHHHHHTCCCCCCTTSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 867999999999999999999779980679999999
|
| >d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=26795.03 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~ad~~r~i~i~aNi~~~~e~~~a~~~gadGVGL~RtEflfl~~~~~~~~~~~~i~~p~~ee~~~~~~~~~~ 80 (356)
T d1vbga1 1 SGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDRLLP 80 (356)
T ss_dssp SCHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCCSEEEEEHHHHHTTCHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 93488999987537764899858999999999847997171777888741886304678987629999999999998788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~q~~~y~~i~~~~~g~pvtiRtlD~~~dk~lp~~~~~~~~~~l~~~~g~dk~~~~~~~~~~~E~NP~LG~RGiR~~l~~p 160 (356)
T d1vbga1 81 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCRLGISYP 160 (356)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCSCGGGGSCCSCHHHHHHHHHHHHCCCHHHHHHHHHHHCCSCGGGSSCTHHHHHHSH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHCEEEEECHHHH
T ss_conf 78999999999748996699984278776676630567999999871998024554321334688432020455010211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~f~~ql~Ail~A~~~~~~~~~~~~~~IMiPmV~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iGiMiEvPsaal~~d~ 240 (356)
T d1vbga1 161 ELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADE 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 21357899999898744545756536550058763999999998887757888873066667435552357289997999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~DF~SIGTNDLtQytla~DRdn~~~~~~~y~~~~~~~~dp~~pav~~~i~~lI~~a~~~~k~~~~~i~vsiCGE~a 320 (356)
T d1vbga1 241 IAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHG 320 (356)
T ss_dssp HTTTCSEEEECHHHHHHHHHTCCTTTGGGTHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEEESGGG
T ss_pred HHHEEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 96567899953038999999861310000026888630122587547789999999999999988507999699706434
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
|
T Consensus 321 sdp~~~~~L~~lGi~~iS~sp~~ip~~k~a~aq~~~ 356 (356)
T d1vbga1 321 GEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV 356 (356)
T ss_dssp GSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCC
T ss_conf 799999999987999899890778999999977509
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=100.00 E-value=0 Score=26794.45 Aligned_cols=1 Identities=0% Similarity=-2.553 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~ 80 (356)
T d1w8oa3 1 GEPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPI 80 (356)
T ss_dssp CCCCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSC
T ss_pred CCCCCCEEECCCCCCCCCEEEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 99741200110057688383670789998999999999646489988887329999906899787788873238887764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1w8oa3 81 KGFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAAS 160 (356)
T ss_dssp BEEEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECS
T ss_pred CCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34466248996899839999964035774443336787787479999983687652104652056655434432123466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 240 (356)
T d1w8oa3 161 GEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGYRKV 240 (356)
T ss_dssp EECEECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCBCSSCCSEEEEECTTSCEEEEECCTTCCSEEEE
T ss_pred CCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 32046000244664045553012236632577752688752001446675543316899257620255642555540577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~i~~~ 320 (356)
T d1w8oa3 241 AVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG 320 (356)
T ss_dssp EEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEECCCCCEECCC
T ss_conf 88426887543022014335788787326743665346789809999799998897316999990799155886081799
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
=
T Consensus 321 ~~~Ys~~~~~~dg~i~~~ye~g~~~~~~~~~l~~~~ 356 (356)
T d1w8oa3 321 SMSYSTLTALPDGTYGLLYEPGTGIRYANFNLAWLG 356 (356)
T ss_dssp ECCCEEEEECTTSCEEEEECCSSEEEEEEECHHHHT
T ss_pred CCCCCEEEECCCCEEEEEEECCCCCEEEEEEHHHCC
T ss_conf 976863689589989999988997389996289979
|
| >d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase B, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26790.74 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~yy~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lTHi~yaFa~i~~~g~~~~~~~~~~~~~~~~~~~~~~lK 80 (356)
T d1goia2 1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALK 80 (356)
T ss_dssp CCCEEEEEEECCHHHHHTCCSSCTTTCSSCGGGSCHHHHHHCSEEEEEEEEECTTSSEECCTTCCHHHHHHHHHHHHHGG
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98579999867745767624467766776720088404752994999879977996488258765267788999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~p~lKvllSiGGW~~s~~~~~~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGIDIDWE~P~~~~~~~~~~l~~el~ 160 (356)
T d1goia2 81 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIR 160 (356)
T ss_dssp GGCTTCEEEEEEECHHHHSTTSTTHHHHHHHTSSHHHHHHHHHHHHHHHHHHTCSEEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 87889869999837767788765543067885899999999999999999829982446420135444455336899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~d~~~l~~~vD~invMtYD~~g~w~~~tg~~spLy~~~~~p~~~~~ 240 (356)
T d1goia2 161 TLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNA 240 (356)
T ss_dssp HHHHHHHHHTTCTTSCCEEEEEEESSHHHHTTTGGGHHHHHTTCSEEEEECCCSSCTTSSSCCCTTCSSBCTTSCCBCCG
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 98778888746545543058840577777752104799863215746787302367888887887745477889733212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vsydd~~Si~~K~~y~~~~~LgGv~iW~l~~Dd~ 320 (356)
T d1goia2 241 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQDNR 320 (356)
T ss_dssp GGGSSCCCCHHHHHHHCCSSBCCCHHHHHHHHHTSTTCCGGGEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECGGGSCT
T ss_pred CCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 55444566765456566887522225899977986599843405882149999999999999957998999981488899
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------9
Q 001846 864 -----------------------------------V 864 (1006)
Q Consensus 864 -----------------------------------V 864 (1006)
=
T Consensus 321 ~gsLl~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1goia2 321 NGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPG 356 (356)
T ss_dssp TCHHHHHHHHHHHCTTCCCTTCCCCSCBCCCCCCTT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 967999987762687899653506788154178999
|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Gentisate 1,2-dioxygenase-like domain: Gentisate 1,2-dioxygenase species: Silicibacter pomeroyi [TaxId: 89184]
Probab=100.00 E-value=0 Score=26721.29 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~plw~~~~~~~p~~p~~~~~p~~w~~~~~~~~l~~~~~~~~~~~~~rr~~~l~np~~~~~~~ 80 (355)
T d3bu7a1 1 RDTPELEAYYDDLAKIETGALWTVANDIEPWEPTPKSAPVHWKWSDLRREVLRAIDLVRPEDAGRRVVYLRNPQRKDVSA 80 (355)
T ss_dssp CCCHHHHHHHHHHHHTTCCCGGGSCGGGSCSSCCCSSCCCEECHHHHHHHHHHHHHHSCSSCSSCCCEECCCGGGGGGTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCCCCCCC
T ss_conf 98578999999998768945110046778999998862216009999999998741168311770599960798778777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~t~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D 160 (355)
T d3bu7a1 81 ACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD 160 (355)
T ss_dssp SBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred CCCHHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECC
T ss_conf 67204532076689983730115442048999898079989998877667999995899528622478997489998125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~ 240 (355)
T d3bu7a1 161 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI 240 (355)
T ss_dssp HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred HHHHHHCCCEECCCCCHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 67876326300125840014555787602455344565443456776668533366442167789898547888778559
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 l~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~ 320 (355)
T d3bu7a1 241 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQER 320 (355)
T ss_dssp EEECCTTTSSCSSSSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCEEEEEECCCEEEECCCCCEEEECCCCC
T ss_conf 99646655577752016789997899705883735707999997849999999998862899899499984785558998
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
-
T Consensus 321 e~~~Lf~~~D~P~~~~Lg~~~e~~~~~~~~~q~~~ 355 (355)
T d3bu7a1 321 DDACLFSFNDFPVMEKLGFWAEQALEDNGGHQIVA 355 (355)
T ss_dssp CCEEEEEEESHHHHHHTTCCCEEECCSTTTCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86899995475999876167775411047976569
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26720.58 Aligned_cols=1 Identities=0% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRg 80 (355)
T d1jbqa_ 1 WIRPDAPSRCTWQLGRPASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRI 80 (355)
T ss_dssp CCCTTSCCCCCCCTTSCGGGCCSCCCCCCCCCSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 98899998865548986888997666776556410318775489973788643277599977999977889755979999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 a~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~ 160 (355)
T d1jbqa_ 81 SLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPES 160 (355)
T ss_dssp HHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 99999999972886667669972555400488999986257708996123168899999844976999216643101555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep 240 (355)
T d1jbqa_ 161 HVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP 240 (355)
T ss_dssp HHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 34699999973356513444576532001005650034441389998568622587037788888752487536986325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~ 320 (355)
T d1jbqa_ 241 EGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQ 320 (355)
T ss_dssp TTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHH
T ss_conf 67720133333322334522355456620111100120220358989999999999998095982899999999999977
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
+
T Consensus 321 ~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~ 355 (355)
T d1jbqa_ 321 ELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL 355 (355)
T ss_dssp GCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 60896989999777976235642689999877899
|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type E [TaxId: 556]
Probab=100.00 E-value=0 Score=26716.97 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
-
T Consensus 1 ~~~~~~a~~G~a~~~g~~t~GG~gg~v~~Vt~l~dL~~al~~~~~~~~vi~v~G~I~~~~~~~~~~~~~~~~~~~i~v~s 80 (355)
T d1pcla_ 1 AVETDAATTGWATQNGGTTGGAKAAKAVEVKNISDFKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPS 80 (355)
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEECEEEECCCCCCEECCCCCCCCCEEECCC
T ss_conf 95456788741512798775789963999289999999873769942999987399767762010033212230376079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 n~TI~G~G~~~~i~g~gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~~~~~vwIDHcs~s~~~d~~~~ 160 (355)
T d1pcla_ 81 NTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDK 160 (355)
T ss_pred CCEEEECCCCEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 97698535753995578999736548997348625756687546687767667638842885089977552467656544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~~~~~~~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~G~~h 240 (355)
T d1pcla_ 161 YTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIH 240 (355)
T ss_pred CCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 33435653103561466024601489842123775420133677788655677615889534435776659851255798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 v~NN~~~n~~~~~~~~~~y~~~~~~~~~v~~e~NyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (355)
T d1pcla_ 241 AYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNPECSIVKQFNSKVFSDKGSLVNGSTTTKLDTC 320 (355)
T ss_pred EECCEEECCCCCCCCCCEEEECCCCCCEEEEECCEEECCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 98848888777534420055136767469986978878998654225777550440588577457533068623435776
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
|
T Consensus 321 ~~~~~~~~~p~~~~~~~~a~~v~~~V~~~AGAGkl 355 (355)
T d1pcla_ 321 GLTAYKPTLPYKYSAQTMTSSLATSINNNAGYGKL 355 (355)
T ss_pred CCCCCCCCCCCCCEECCHHHHHHHHHHHCCCCCCC
T ss_conf 55312457875242128578777877626788859
|
| >d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Bacterial luciferase (alkanal monooxygenase) domain: Bacterial luciferase alpha chain, LuxA species: Vibrio harveyi [TaxId: 669]
Probab=100.00 E-value=0 Score=26717.70 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 M~fg~f~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gf~~~~~~ehh~~~~~~~~~p~~~~a~~a~~T~~I~lgt~v~~~~~ 80 (355)
T d1luca_ 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPT 80 (355)
T ss_dssp CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEECCCCSBTTBCCSCHHHHHHHHHHHCSSCEEEEEEEEGGG
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 91357668879999799999999999999999879989996235788877767999999999996791068542367887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~P~~~A~~~atLd~ls~GR~~lGig~G~~~~~~~~~G~~~~~~~~~~~E~~~il~~l~~~~~~~~~G~~~~~~~~~~~P 160 (355)
T d1luca_ 81 AHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADNEHIKFPKIQLNP 160 (355)
T ss_dssp SCHHHHHHHHHHHHHHHTSCEEEEEECCCCHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHSEEEEESSSCEEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65999999998887626997146542034300343210121001101578888887520243322222344444322366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~p~q~~~~Pi~~a~~sp~~~~~Aa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~v~~~~e~A~ 240 (355)
T d1luca_ 161 SAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVTKIDHCLSYITSVDHDSNRAK 240 (355)
T ss_dssp CCSSTTSSCEEECCCSHHHHHHHHHTTCCBEECSSSCHHHHHHHHHHHHHHHHHTTCCGGGCCCEEEEECEECSSHHHHH
T ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 43567888620120322789999985067644354203331127899999887622454333210010011467799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~v~~~l~~~~e~~Gv 320 (355)
T d1luca_ 241 DICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRDFVLKGHKDTNRRIDYSYEINPVGTPEECIAIIQQDIDATGI 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------------------------CCSGGGGGSSEESHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 99999999999986421013576132125421102344555403501678887427741564899999999999997599
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
=
T Consensus 321 d~~~l~~~~~~~~~~~~~sl~lfae~V~P~lr~~~ 355 (355)
T d1luca_ 321 DNICCGFEANGSEEEIIASMKLFQSDVMPYLKEKQ 355 (355)
T ss_dssp CEEEEECGGGCSHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97999788999999999999999984101124899
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26716.29 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~ 80 (355)
T d2b1pa1 1 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIS 80 (355)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99879995894045337759988962175859999999999989999998823369799999999999998648987648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl 160 (355)
T d2b1pa1 81 LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 160 (355)
T ss_dssp CSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEE
T ss_pred EEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99897025643457626999841446778765038999999999999999998865221124567763211365443132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~ 240 (355)
T d2b1pa1 161 LDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE 240 (355)
T ss_dssp CCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf 01023211466655332214655558133147777877433356625789865989988897788999999720589879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~~ 320 (355)
T d2b1pa1 241 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320 (355)
T ss_dssp HHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCC
T ss_conf 99876566777764175435666421264333543210133379999999999876994579089999669420878881
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355)
T d2b1pa1 321 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN 355 (355)
T ss_dssp HHHTCCCC-------CCCCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCC
T ss_conf 00458999877702332415999999999998629
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=0 Score=26715.91 Aligned_cols=1 Identities=100% Similarity=1.931 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
|
T Consensus 1 ~~~~~hgg~~~~~~~~~g~~p~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~ 80 (355)
T d1lc5a_ 1 LFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAG 80 (355)
T ss_dssp CCCCSSSCCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTTCHHHHHHHHHHHTSCGGGEEEE
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEEC
T ss_conf 98678898799999981988432688669898989899999999987777306999975999999999869787989965
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~ 160 (355)
T d1lc5a_ 81 NGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLL 160 (355)
T ss_dssp SSHHHHHHHHHHHHCCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCC
T ss_conf 53899999987540223223457741100012223434320354221477530000000246665245542146755332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~ 240 (355)
T d1lc5a_ 161 PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQ 240 (355)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCHHHHHHHHHH
T ss_conf 10443001454212323333443331343320122222311244310102554333101123342331423466787752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~L~~~gv~v 320 (355)
T d1lc5a_ 241 QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILI 320 (355)
T ss_dssp SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESCTTCCHHHHHHTTTEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCEE
T ss_conf 28732122333323333222220578999999999999877764298188899877999978999999999999789199
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
+
T Consensus 321 r~~~~f~~~~~~~iRis~~~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 321 RSCANYPGLDSRYYRVAIRSAAQNERLLAALRNVL 355 (355)
T ss_dssp EECTTSTTCCTTEEEEECCCHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 96765789899989998189999999999999769
|
| >d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FucI/AraA N-terminal and middle domains superfamily: FucI/AraA N-terminal and middle domains family: L-fucose isomerase, N-terminal and second domains domain: L-fucose isomerase, N-terminal and second domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26720.22 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
+
T Consensus 1 ~~~~~~pkiGirp~~Dgr~~~~re~le~~t~~~ak~~a~~l~~~l~~~~g~~ve~V~~d~~i~~~~eA~~~aekf~~~~v 80 (355)
T d1fuia2 1 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNV 80 (355)
T ss_dssp CCSCSCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 98678980677853356504432038999999999999999987412689976999467516886999999999866598
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 d~~i~v~p~w~~~~~~~~~~~~~p~~vw~fn~~erpG~vgl~a~~aa~~q~Gip~~~iyg~~vqd~~d~~~p~dv~ekll 160 (355)
T d1fuia2 81 GLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL 160 (355)
T ss_dssp EEEEEEESSCCCHHHHSCCCSSSCEEEEECBCSSSBHHHHHHHHHHHHHHTTCCCEEEECSSCCCTTCCCCCHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 77999825546615545314799866882689999868999999999986598734760776668754226699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~faRAa~av~~Lrg~~ig~iG~~~mGm~~~~~d~~~l~~~fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~~~~ 240 (355)
T d1fuia2 161 RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY 240 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSCSTTCGGGSCCHHHHHHHHCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999998658927887785677441257999999983995278759999999974689999999999999973302
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 g~d~n~~~~~~~~~~~~e~~e~~vkm~~~~rdlm~~n~~l~~~~~~ee~~g~~aia~gfqgqr~wtd~~p~~d~~ea~LN 320 (355)
T d1fuia2 241 GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILN 320 (355)
T ss_dssp CCCCSCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHTTCHHHHTCCCEEEEEECCTTTTTTTSCCSHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHC
T ss_conf 41357512477776759899999999999999985081034414157656888425531245202103655107899857
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
-
T Consensus 321 s~~dwnG~rep~~~AtE~D~~~altMl~~~lLTgt 355 (355)
T d1fuia2 321 SSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGT 355 (355)
T ss_dssp SSEETTEECCCCCEEETTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 84444787686336633340108999999875089
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=26714.49 Aligned_cols=1 Identities=0% Similarity=-2.420 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 001846 863 L------------------------------------------------------------------------------- 863 (1006)
Q Consensus 863 L------------------------------------------------------------------------------- 863 (1006)
=
T Consensus 1 ~~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 1 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 99717476589999999982664777671999999999499999899998569948999999996777642015899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 69993899989998347873799962433300011061021538997388746998299996589907998445784412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001846 864 -------------------------------------------------------------------------------- 863 (1006)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1006)
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~ 320 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET
T ss_pred EEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 68543303510899980799767887406871265179975999867888498996689987799992899969999978
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------9
Q 001846 864 ----------------------------------V 864 (1006)
Q Consensus 864 ----------------------------------V 864 (1006)
=
T Consensus 321 ~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf 99989999999998999992869796589969999
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