Citrus Sinensis ID: 001912

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------100

MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccEEccccHHHHHHHHHcccccccccccccccccccHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEcHHHHHHHHHHHccccccEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccEEEccHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHccccccccccccccHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEcccccHHHHccccHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHHccccccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHccccHHcccc

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHEEcccccccEEEEEEEccccccHHHHHHcccccccccHHHHHHHHcHHHcHHcccccccccccccccccccEEEccccHHHcccccHHHHHHHHHHHHcccccEEHcccccHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccEEEEEHHHHHHcHHHHHcccEEEEEEccHHHHcccccHHHHHHHHHHHHcHccccEEEEEccccccccHHHHHHHHHHHcHHHHcccHccHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccEHEEcccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEEEEccccccEEcccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHccHHHcHHHHHHccccHHHHHHHHHccccccccccccHHHHccccHHHHHEEEEccccccccccccccccHHcccHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHcccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHccccccccccccHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHcccEccccccHHHHHHHcccccHHHHHHHHHHHcHHHHHHccc

MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAwrlskcrkfstepthfpksaladpnsttqlpenFRVRleicspdsfsvtplaiegfvypgEEECLRRLGQWlsdvmpshytqnnsggkacvyklrdynpvltclknsagievegipWVTLNVVEKLSHsidtgrwnpcrpehlsdEVVDEMIGKLPKSLLDVILPFQLEGVRfglrrggrcliademglgKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWlpfclpadihlvfghrnnpvhltrfPRVVVISYTMLHRLRKSMIEQDWALLIVDeshhvrcskrtsepeEVKAVLDVAAKVKRIVLLsgtpslsrpydifhqinmlwpgllgkakYDFAktycdvktvqgyqgqlfqdfskGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGvindsekdatndktpkdsdehddsgaccrlgkisyqELGIAKLSGFREWlsihpviaesdgaadidvnprsnKMIIFAHHLKVLDGVQEFIsekgigfvridgntlprdrqsavhsfqlsnEVKIAIIGITaggvgldfssaqnvvflelpqspslmlqaedrahrrgqtsAVNIYIFCakdttdeshWQNLNKSLRcvssatngkyDALQEIAVEGVSYLEmsdktdrgsedltldqvaSSDQFQELmkvpesseasdfrainTNDEITAKMNDKLLeesktdhsptetddhhnnvsqytgrihlyscvpgtdsrprplfesfrpeeldntehisgclkenpgyrHAIQAFINEWnalrpiertkllgkplqlplSVELCYLKETinhssggllkggskrrttpsleishplpsgaewkkvricsgsrkkekeytqgwtindeplcKLCQKTcksknaknaEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEhgvctncqldchklvkhikplslEQRRKYIVRVapnvasrqnm

meiteeqrQRAEANRLAALAKRKalqqsattasnrqdawrLSKCRKFSTepthfpksaladpnsttQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLShsidtgrwnpcrPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVrcskrtsepeevkaVLDVAAKVKRIVLLsgtpslsrpydIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKqhllvqlppkrRQIIRLLLKrseivsakaavgvindsekdatndktpkdsdehddsgACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMkvpesseasdfraiNTNDEITAKMNDKLLEESKTdhsptetddhhnnvsqytgRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETInhssggllkggskrrTTPSleishplpsgaewkkvricsgsrkkekeytqgwtindeplcKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKhikplsleqrrKYIVrvapnvasrqnm

MEITeeqrqraeanrlaalakrkalqqSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEvkavldvaakvkRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQlppkrrqiirlllkrSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKiaiigitaggvgLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHssggllkggskRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM

**********************************************************************NFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS********VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVI***********************ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP******************TSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYL*****************************************************************************QYTGRIHLYSCVP**********************HISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINH*****************************WKKVRIC********EYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVA*********

**IT**Q********************************************************************LEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLS***************L**EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN*VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG*************************ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT**************************************************************************************TDDHHNNVSQYT*********************************************HAIQAFINEW***********************LCY**********************************************************INDEPLCKLCQKT******KNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPL*******YIVRVAPNVA*RQ**

*************NRLAA********************WRLSKCRKFSTEPTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH************VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK****************SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLE**************HNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGG************SLEISHPLPSGAEWKKVRIC**********TQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM

*************NRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSAL***NSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVE************PCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD***********YLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLK*****************RTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVAS****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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xxxxxxxxxxxxxxxxxxxxxxxALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		997	2.2.26 [Sep-21-2011]
Q6NZP1		1069	DNA annealing helicase an	yes	no	0.443	0.413	0.370	3e-73
Q5FWF4		1079	DNA annealing helicase an	yes	no	0.455	0.420	0.354	6e-73
E1BB03		1074	DNA annealing helicase an	yes	no	0.449	0.417	0.361	4e-72
Q498E7		960	SWI/SNF-related matrix-as	N/A	no	0.477	0.495	0.327	6e-68
Q0P4U8		942	SWI/SNF-related matrix-as	yes	no	0.483	0.511	0.321	1e-67
B2ZFP3		807	SWI/SNF-related matrix-as	yes	no	0.471	0.582	0.333	3e-65
Q9NZC9		954	SWI/SNF-related matrix-as	no	no	0.456	0.476	0.332	2e-63
B4F769		910	SWI/SNF-related matrix-as	no	no	0.439	0.481	0.333	2e-60
Q8BJL0		910	SWI/SNF-related matrix-as	no	no	0.489	0.536	0.315	2e-59
Q8MNV7		690	Putative SMARCAL1-like pr	yes	no	0.419	0.605	0.326	1e-57

>sp\|Q6NZP1\|ZRAB3_MOUSE DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus GN=Zranb3 PE=1 SV=1	Back alignment and function desciption

 Score =  277 bits (709), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 44/486 (9%)

Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
           LP  L   +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA  +     +L+V P+
Sbjct: 29  LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88

Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
            LR  W EELE+W+P   P +I++V     N   + R P  RV V+ Y +L    +++++
Sbjct: 89  SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144

Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
               Q++ ++IVDESH+++   RT+     K +L +  K +R +LL+GTP+L RP ++F 
Sbjct: 145 ALNTQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 200

Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
           QI  L+P   G    ++AK YC+      Y G+  Q D      L EL+ LL   +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256

Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
           LK  +L QLPPK RQ I   L         AAV  +N S E+     + P         G
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 309

Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
              R+    +++  IAK    ++++ +   + ++D          S K ++FAHHL +L 
Sbjct: 310 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 352

Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
              E + E    ++RIDG+    +R   V+ FQ   + ++AI+ I A G GL F++A +V
Sbjct: 353 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 412

Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
           VF EL   P  + QAEDRAHR GQ S+VNI+   A  T D   W  LN+  +   S  NG
Sbjct: 413 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 472

Query: 665 KYDALQ 670
           + + LQ
Sbjct: 473 RKEKLQ 478

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|Q5FWF4\|ZRAB3_HUMAN DNA annealing helicase and endonuclease ZRANB3 OS=Homo sapiens GN=ZRANB3 PE=1 SV=2	Back alignment and function description

>sp\|E1BB03\|ZRAB3_BOVIN DNA annealing helicase and endonuclease ZRANB3 OS=Bos taurus GN=ZRANB3 PE=3 SV=3	Back alignment and function description

>sp\|Q498E7\|SMAL1_XENLA SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis GN=smarcal1 PE=2 SV=1	Back alignment and function description

>sp\|Q0P4U8\|SMAL1_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis GN=smarcal1 PE=2 SV=1	Back alignment and function description

>sp\|B2ZFP3\|SMAL1_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio GN=smarcal1 PE=2 SV=1	Back alignment and function description

>sp\|Q9NZC9\|SMAL1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1	Back alignment and function description

>sp\|B4F769\|SMAL1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Rattus norvegicus GN=Smarcal1 PE=2 SV=1	Back alignment and function description

>sp\|Q8BJL0\|SMAL1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Mus musculus GN=Smarcal1 PE=2 SV=1	Back alignment and function description

>sp\|Q8MNV7\|SMAL1_CAEEL Putative SMARCAL1-like protein OS=Caenorhabditis elegans GN=C16A3.1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		997
255547283		1229	ATP binding protein, putative [Ricinus c	0.997	0.809	0.633	0.0
297733908		1201	unnamed protein product [Vitis vinifera]	0.995	0.826	0.648	0.0
42567734		1190	SNF2 and helicase domain-containing prot	0.987	0.827	0.568	0.0
297810883		1194	SNF2 domain-containing protein [Arabidop	0.982	0.820	0.568	0.0
356519100		1193	PREDICTED: zinc finger Ran-binding domai	0.971	0.812	0.574	0.0
10176715		1178	unnamed protein product [Arabidopsis tha	0.975	0.825	0.558	0.0
359491297		1280	PREDICTED: zinc finger Ran-binding domai	0.749	0.583	0.648	0.0
218199966		1165	hypothetical protein OsI_26740 [Oryza sa	0.985	0.843	0.516	0.0
222637395		1174	hypothetical protein OsJ_24993 [Oryza sa	0.985	0.837	0.510	0.0
297607570		1158	Os07g0598300 [Oryza sativa Japonica Grou	0.975	0.840	0.511	0.0

>gi\|255547283\|ref\|XP_002514699.1\| ATP binding protein, putative [Ricinus communis] gi\|223546303\|gb\|EEF47805.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1355 bits (3508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/1104 (63%), Positives = 813/1104 (73%), Gaps = 109/1104 (9%)

Query: 1    MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQ-DAWRLSKCRKFS---------TE 50
            M ITEEQR+RAE+NRLAALAKRK   +S      +Q + W+L KCRK S         T+
Sbjct: 1    MPITEEQRERAESNRLAALAKRKVFTESVINQQQQQHNPWKLFKCRKLSSDRISTTSTTQ 60

Query: 51   PTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWL 110
             +  P  A  DPNS   L + FRVRLEICSPDSFS+TP A+ GF+Y GEEECLRRL  +L
Sbjct: 61   HSKPPPLAPIDPNSDAHLGQKFRVRLEICSPDSFSLTPEALRGFIYAGEEECLRRLNVFL 120

Query: 111  SDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDT 170
            +DVMPSHYTQN+ GGKACVYKLRDY+ VL+CLKN   IE+E IP+ TL+VV++LSHS +T
Sbjct: 121  ADVMPSHYTQNHGGGKACVYKLRDYDAVLSCLKNYKVIEIEKIPFGTLHVVQRLSHSFET 180

Query: 171  GRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKT 230
            GRW P RPEH +DE VDE+IG LP+ +LDV+LPFQL+G+RFGLRRGGRCLIADEMGLGKT
Sbjct: 181  GRWEPIRPEHFTDEKVDELIGNLPRKILDVLLPFQLDGLRFGLRRGGRCLIADEMGLGKT 240

Query: 231  LQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
            LQAIAIA CF++ G ILVVCPAILR SWAEELERWLP CLP++IHLVFGH+NNP +LTR 
Sbjct: 241  LQAIAIAGCFMNEGPILVVCPAILRFSWAEELERWLPSCLPSEIHLVFGHQNNPAYLTRC 300

Query: 291  PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
            PRVVVIS+ MLH L KSM+E++WALLIVDESHHVRCSK+ SEP E+KAVLDVAAKVKR+V
Sbjct: 301  PRVVVISFKMLHHLGKSMLEREWALLIVDESHHVRCSKKKSEPNEIKAVLDVAAKVKRMV 360

Query: 351  LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
            LLSGTPSLSRPYDIFHQINM  PGLLG++KYDFAKTYC +K V   +G+ FQDFS+G RL
Sbjct: 361  LLSGTPSLSRPYDIFHQINM--PGLLGQSKYDFAKTYCAIKHVPTSEGKSFQDFSRGTRL 418

Query: 411  EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
            EELN+LL QTVMIRRLK+H++ QLPPKRRQIIR+LLK+S IVSAK A G ++D+  +A  
Sbjct: 419  EELNMLLTQTVMIRRLKKHVMEQLPPKRRQIIRILLKKSNIVSAKGAFGTMSDNASEALL 478

Query: 471  DKT-PKDSDEH---------DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
              T  +D+  H            G+ C+L K+SYQELGIAKL  FREWLSIHP+I ESDG
Sbjct: 479  KFTIHEDNTLHAFTLYLHFLSGCGSFCKLNKLSYQELGIAKLPAFREWLSIHPLITESDG 538

Query: 521  AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
             A++DVN  S KMIIFAHH KVLDGVQE I EKGIGFVRIDGNTLPRDRQSAV SFQ SN
Sbjct: 539  VAELDVNCISQKMIIFAHHHKVLDGVQELIFEKGIGFVRIDGNTLPRDRQSAVRSFQSSN 598

Query: 581  E---VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
            E   VKIAIIG+TAGGVGLDFSSAQNVVFLELPQS SLMLQAEDRAHRRGQT+AVNIYIF
Sbjct: 599  EASIVKIAIIGVTAGGVGLDFSSAQNVVFLELPQSSSLMLQAEDRAHRRGQTNAVNIYIF 658

Query: 638  CAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLE----------MSDKT- 686
            CAKDT DE HWQ LNKSL  VSS TNGKYDA+ EI V+GVSYLE          +SDK  
Sbjct: 659  CAKDTVDERHWQYLNKSLHRVSSTTNGKYDAVPEIPVDGVSYLESTSEGSSGNQISDKAS 718

Query: 687  -------------------------------DRGSE------------DLTLD-QVASSD 702
                                           DR  E            D  L  ++AS+ 
Sbjct: 719  YAKLSAITEDSCTAKNMQPFENHDEAAGTLIDRSEEHPSYGATAVQTDDFHLKVELASTA 778

Query: 703  QFQELMKVPESSEASDFRAINTND---------EITAKMNDKLLEESKTDHSPT---ETD 750
              +EL      SE++    I+++          EI  + N     +   +H P    E D
Sbjct: 779  LDKELYNYIAESESNSDGGISSSKLDKGNGSEHEIEKEQNPLSQTKETYNHVPALGNEAD 838

Query: 751  DHHNN--------VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEEL---------DNTEH 793
            +  +N        VS+YTGRIHLYSC+ GTD RP+PLFE+FRPEE+         +N E 
Sbjct: 839  ETFSNQVYSLRFEVSKYTGRIHLYSCILGTDPRPQPLFENFRPEEIESFNSLVANNNNES 898

Query: 794  ISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGL 853
             +   K  P YRHA+ AFI EWN LRPIER KL+GK LQLPLS+ELCYL E INHS+ GL
Sbjct: 899  ATKPFKGIPPYRHALLAFIKEWNKLRPIERRKLVGKTLQLPLSIELCYLNENINHSTEGL 958

Query: 854  LKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTC 913
            LKGGSKRR TP  EIS+PLPSGA WK V + S   KKEK+YTQGWT+ DEPLCKLCQ  C
Sbjct: 959  LKGGSKRRMTPWFEISYPLPSGAVWKNVNLSSSYGKKEKQYTQGWTLMDEPLCKLCQTPC 1018

Query: 914  KSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIK 973
            K  NAK  E+FEDLFCNL CYEEYR+RTS R LR+ELF+IE+GVCTNCQLDCHKLVK I+
Sbjct: 1019 KGSNAKTPEFFEDLFCNLSCYEEYRIRTSSRSLRQELFQIEYGVCTNCQLDCHKLVKTIQ 1078

Query: 974  PLSLEQRRKYIVRVAPNVASRQNM 997
            PL+LE+RR+YI +VAPN+ASR+ +
Sbjct: 1079 PLTLERRREYIEKVAPNLASRKKL 1102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297733908\|emb\|CBI15155.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|42567734\|ref\|NP_196398.2\| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gi\|332003824\|gb\|AED91207.1\| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297810883\|ref\|XP_002873325.1\| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297319162\|gb\|EFH49584.1\| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356519100\|ref\|XP_003528212.1\| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|10176715\|dbj\|BAB09945.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359491297\|ref\|XP_002281382.2\| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|218199966\|gb\|EEC82393.1\| hypothetical protein OsI_26740 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|222637395\|gb\|EEE67527.1\| hypothetical protein OsJ_24993 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|297607570\|ref\|NP_001060181.2\| Os07g0598300 [Oryza sativa Japonica Group] gi\|255677946\|dbj\|BAF22095.2\| Os07g0598300, partial [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		997
TAIR\|locus:2142753		1190	AT5G07810 [Arabidopsis thalian	0.449	0.376	0.604	1.8e-289
MGI\|MGI:1918362		1069	Zranb3 "zinc finger, RAN-bindi	0.229	0.214	0.395	5.6e-67
UNIPROTKB\|Q5FWF4		1079	ZRANB3 "DNA annealing helicase	0.237	0.219	0.369	2.9e-66
UNIPROTKB\|E2RK04		1069	ZRANB3 "Uncharacterized protei	0.231	0.216	0.369	1.8e-65
UNIPROTKB\|E1BSZ6		1086	ZRANB3 "Uncharacterized protei	0.240	0.220	0.360	7.6e-65
UNIPROTKB\|E1BB03		1074	ZRANB3 "DNA annealing helicase	0.231	0.215	0.373	1.4e-64
UNIPROTKB\|E1BSZ4		1078	ZRANB3 "Uncharacterized protei	0.240	0.222	0.360	2.4e-64
UNIPROTKB\|F5GYN7		1077	ZRANB3 "Endonuclease ZRANB3" [	0.237	0.220	0.353	2.5e-62
ZFIN\|ZDB-GENE-060712-1		541	zranb3 "zinc finger, RAN-bindi	0.245	0.452	0.371	3.3e-56
UNIPROTKB\|Q0P4U8		942	smarcal1 "SWI/SNF-related matr	0.277	0.294	0.326	1.1e-54

TAIR\|locus:2142753 AT5G07810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1416 (503.5 bits), Expect = 1.8e-289, Sum P(3) = 1.8e-289
 Identities = 274/453 (60%), Positives = 333/453 (73%)

Query:    35 RQDAWRLSKCRKFSTEPTHFPKSALA--DPNS--TTQLPENFRVRLEICSPDSFSVTPLA 90
             RQ  +RL+KCRK        P+      +P    +T +PE FRVRLEICSPDSFSVTP+ 
Sbjct:    34 RQQDFRLAKCRKLDGSNDVCPQEGYRNYEPVRVLSTSVPEKFRVRLEICSPDSFSVTPVQ 93

Query:    91 IEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEV 150
             ++GF  P E+ECLR+L + LSD +P HYTQN+ GGKA VYK+RDYN V  CLK S  +EV
Sbjct:    94 LQGFRCPEEQECLRQLRKILSDAIPLHYTQNDDGGKAGVYKIRDYNKVSGCLKRSKSVEV 153

Query:   151 EGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR 210
             EG+PW TL VVEKLS S  +G+W PC PEH ++E V+++I  LP+ L++ +LPFQL+G+R
Sbjct:   154 EGVPWKTLAVVEKLSQSYISGKWQPCLPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLR 213

Query:   211 FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCL 270
             FGLRRGGRC IADEMGLGKTLQAIAIA CFIS GSILVVCPA+LR +WAEELERWLP CL
Sbjct:   214 FGLRRGGRCFIADEMGLGKTLQAIAIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCL 273

Query:   271 PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330
             P+D+HLVFGH++NP +L R+P+VVVISY ML  LR +M+E++WALLIVDESHH+RCSK+ 
Sbjct:   274 PSDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKK 333

Query:   331 SEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
             S+P E             I+LLSGTPS+SRP+DIFHQINMLWPGLLGK KY+FAKTYC+V
Sbjct:   334 SDPPEIKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEV 393

Query:   391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSE 450
               V+G QG++FQDFSKG RL ELN+LL QTVMIRRLKQHLL Q               S+
Sbjct:   394 GLVRGIQGKIFQDFSKGTRLLELNILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSD 453

Query:   451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
             I  A A V      +  A  + T K S E D +
Sbjct:   454 IALAMAIVSEAKKQKDGAIAEVTEK-SHEPDQN 485

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006310 "DNA recombination" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

MGI\|MGI:1918362 Zranb3 "zinc finger, RAN-binding domain containing 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5FWF4 ZRANB3 "DNA annealing helicase and endonuclease ZRANB3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RK04 ZRANB3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BSZ6 ZRANB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BB03 ZRANB3 "DNA annealing helicase and endonuclease ZRANB3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BSZ4 ZRANB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GYN7 ZRANB3 "Endonuclease ZRANB3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060712-1 zranb3 "zinc finger, RAN-binding domain containing 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0P4U8 smarcal1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016259001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (1082 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		997
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	6e-41
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	6e-30
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-21
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	3e-16
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	4e-15
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	6e-15
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	7e-15
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	1e-14
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	7e-10
PRK04914		956	PRK04914, PRK04914, ATP-dependent helicase HepA; V	1e-06
COG1061		442	COG1061, SSL2, DNA or RNA helicases of superfamily	2e-06

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  162 bits (411), Expect = 6e-41
 Identities = 115/535 (21%), Positives = 210/535 (39%), Gaps = 86/535 (16%)

Query: 187 DEMIGKLPKSLLDVIL-PFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACF- 240
           ++++       L   L P+QLEGV +            ++AD+MGLGKT+Q IA+     
Sbjct: 324 EDLLNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLL 383

Query: 241 ----ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP----------VH 286
               +  G  L+V PA L  +W  E E++ P      ++       +           +H
Sbjct: 384 ESIKVYLGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLH 443

Query: 287 LTRFPRVVVISYTMLHR---LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343
           L     VV+ +Y +L R       + + +W  +++DE+H +  + ++SE + ++      
Sbjct: 444 LVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI-KNDQSSEGKALQ-----F 497

Query: 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLW-PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ 402
            K    + L+GTP  +R  +++  +     PGLLG +   F + +      +   G L  
Sbjct: 498 LKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEA 557

Query: 403 DFSKGVRLEELNVLLKQTVMIRRLK--QHLLVQLPPKRRQIIRLLLK----------RSE 450
                  L +L        ++RR K    +L +LPPK  +++   L              
Sbjct: 558 RELGIELLRKLL----SPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEG 613

Query: 451 IVSAKAAVGVINDSEKDAT---------------------------NDKTPKDSDEHDDS 483
               +  +  +  ++ D                                           
Sbjct: 614 AEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLL 673

Query: 484 GACCRLGKISYQ--ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
                   +     +L   KL    E L +  ++ E              K++IF+    
Sbjct: 674 REDKDFDYLKKPLIQLSKGKLQALDE-LLLDKLLEEGHYH----------KVLIFSQFTP 722

Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
           VLD +++++   GI +VR+DG+T  + RQ  +  F    E K+ ++ + AGG+GL+ + A
Sbjct: 723 VLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGA 782

Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
             V+  +   +P++ LQA DRAHR GQ   V +Y    + T +E   +   K   
Sbjct: 783 DTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQE 837

Length = 866

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated	Back alignment and domain information

>gnl\|CDD\|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		997
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
PHA02558		501	uvsW UvsW helicase; Provisional	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	100.0
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.97
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.95
KOG0354		746	consensus DEAD-box like helicase [General function	99.94
PTZ00110		545	helicase; Provisional	99.94
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.93
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.93
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.93
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.93
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.92
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.92
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.92
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.92
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.91
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.91
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.91
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.91
PTZ00424		401	helicase 45; Provisional	99.91
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.91
PRK10689		1147	transcription-repair coupling factor; Provisional	99.9
PRK02362		737	ski2-like helicase; Provisional	99.9
KOG1123		776	consensus RNA polymerase II transcription initiati	99.9
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.9
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.9
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.89
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.89
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.87
PRK01172		674	ski2-like helicase; Provisional	99.86
PRK13767		876	ATP-dependent helicase; Provisional	99.86
PRK00254		720	ski2-like helicase; Provisional	99.86
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.86
COG1202		830	Superfamily II helicase, archaea-specific [General	99.84
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.8
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.8
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.78
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.78
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.78
COG4096		875	HsdR Type I site-specific restriction-modification	99.78
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.78
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.77
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.76
PRK09401		1176	reverse gyrase; Reviewed	99.75
COG1204		766	Superfamily II helicase [General function predicti	99.75
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.75
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.73
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.73
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.73
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.73
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.72
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.72
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.72
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.71
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.71
PHA02653		675	RNA helicase NPH-II; Provisional	99.71
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.71
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.7
COG4889		1518	Predicted helicase [General function prediction on	99.7
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.7
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.69
KOG4284		980	consensus DEAD box protein [Transcription]	99.68
COG1205		851	Distinct helicase family with a unique C-terminal	99.68
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.67
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.67
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.67
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.67
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.67
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.66
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.66
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.66
PRK05580		679	primosome assembly protein PriA; Validated	99.66
PRK14701		1638	reverse gyrase; Provisional	99.63
PRK09694		878	helicase Cas3; Provisional	99.61
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.61
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.6
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.6
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.58
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.57
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.56
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.55
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.55
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.52
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.51
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.5
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.48
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.46
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.45
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.45
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.45
KOG0327		397	consensus Translation initiation factor 4F, helica	99.44
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.43
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.41
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.4
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.39
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.38
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.36
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.35
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.3
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.26
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.25
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.2
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.19
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.18
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.15
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.14
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.11
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.08
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.05
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.04
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.95
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.85
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.85
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.84
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	98.83
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.82
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.8
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	98.8
PRK05298		652	excinuclease ABC subunit B; Provisional	98.73
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	98.71
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	98.65
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	98.61
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	98.61
COG0610		962	Type I site-specific restriction-modification syst	98.59
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.52
PF13871		278	Helicase_C_4: Helicase_C-like	98.5
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	98.48
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.47
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	98.45
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.44
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.37
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.32
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.11
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	98.1
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.09
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	97.95
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	97.86
PRK15483		986	type III restriction-modification system StyLTI en	97.83
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.77
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	97.71
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.67
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.67
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.66
PF07443		55	HARP: HepA-related protein (HARP); InterPro: IPR01	97.65
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	97.61
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.51
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	97.3
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.29
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.26
KOG1803		649	consensus DNA helicase [Replication, recombination	97.24
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.18
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	97.13
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.09
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	97.07
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	96.99
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	96.96
PRK14873		665	primosome assembly protein PriA; Provisional	96.93
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.85
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	96.7
PRK04296		190	thymidine kinase; Provisional	96.62
PRK10536		262	hypothetical protein; Provisional	96.51
TIGR00376		637	DNA helicase, putative. The gene product may repre	96.41
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.14
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.13
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	96.05
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.99
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	95.87
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	95.7
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	95.39
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	95.3
KOG1131		755	consensus RNA polymerase II transcription initiati	95.29
smart00382		148	AAA ATPases associated with a variety of cellular	94.99
PRK10875		615	recD exonuclease V subunit alpha; Provisional	94.92
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	94.74
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	94.62
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	94.57
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	94.55
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	94.54
PF13245		76	AAA_19: Part of AAA domain	94.37
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	94.18
PRK06526		254	transposase; Provisional	93.98
PHA02533		534	17 large terminase protein; Provisional	93.86
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	93.81
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	93.75
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	93.68
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	93.65
KOG1805		1100	consensus DNA replication helicase [Replication, r	93.56
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	93.46
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	93.37
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	93.31
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	93.15
PF09889		59	DUF2116: Uncharacterized protein containing a Zn-r	93.05
PRK09112		351	DNA polymerase III subunit delta'; Validated	92.97
PRK13889		988	conjugal transfer relaxase TraA; Provisional	92.95
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	92.85
CHL00181		287	cbbX CbbX; Provisional	92.53
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	92.44
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	92.42
PRK14974		336	cell division protein FtsY; Provisional	92.17
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	91.9
PRK08084		235	DNA replication initiation factor; Provisional	91.86
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	91.82
COG1435		201	Tdk Thymidine kinase [Nucleotide transport and met	91.81
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	91.63
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	91.55
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	91.46
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	91.39
PRK05707		328	DNA polymerase III subunit delta'; Validated	91.08
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	90.98
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	90.71
COG0464		494	SpoVK ATPases of the AAA+ class [Posttranslational	90.59
PRK13826		1102	Dtr system oriT relaxase; Provisional	90.52
PRK07952		244	DNA replication protein DnaC; Validated	90.5
PHA03368		738	DNA packaging terminase subunit 1; Provisional	90.38
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	90.37
PRK11823		446	DNA repair protein RadA; Provisional	90.23
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	90.17
COG3267		269	ExeA Type II secretory pathway, component ExeA (pr	90.08
PRK08181		269	transposase; Validated	89.99
PRK12402		337	replication factor C small subunit 2; Reviewed	89.68
PLN03025		319	replication factor C subunit; Provisional	89.53
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	89.51
PRK08727		233	hypothetical protein; Validated	89.29
PRK06921		266	hypothetical protein; Provisional	89.16
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	89.07
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	88.77
PRK03992		389	proteasome-activating nucleotidase; Provisional	88.7
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	88.69
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	88.66
PRK06893		229	DNA replication initiation factor; Validated	88.59
PF00265		176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	88.4
COG1066		456	Sms Predicted ATP-dependent serine protease [Postt	88.19
PTZ00293		211	thymidine kinase; Provisional	87.84
COG1419		407	FlhF Flagellar GTP-binding protein [Cell motility	87.69
PRK06835		329	DNA replication protein DnaC; Validated	87.68
TIGR00416		454	sms DNA repair protein RadA. The gene protuct code	87.65
PF00004		132	AAA: ATPase family associated with various cellula	87.64
PRK05642		234	DNA replication initiation factor; Validated	87.62
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	87.59
PRK14891		131	50S ribosomal protein L24e/unknown domain fusion p	87.48
TIGR03877		237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	87.17
PRK09183		259	transposase/IS protein; Provisional	87.05
PRK10865		857	protein disaggregation chaperone; Provisional	86.76
PHA02544		316	44 clamp loader, small subunit; Provisional	86.7
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	86.7
KOG0740		428	consensus AAA+-type ATPase [Posttranslational modi	86.61
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	86.39
PHA03333		752	putative ATPase subunit of terminase; Provisional	86.32
PRK06731		270	flhF flagellar biosynthesis regulator FlhF; Valida	86.31
PRK00807		52	50S ribosomal protein L24e; Validated	86.29
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	86.28
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	86.27
PRK14087		450	dnaA chromosomal replication initiation protein; P	86.27
PF13173		128	AAA_14: AAA domain	86.24
PRK12724		432	flagellar biosynthesis regulator FlhF; Provisional	86.17
PRK05986		191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	86.13
PRK00771		437	signal recognition particle protein Srp54; Provisi	85.85
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	85.8
PRK06067		234	flagellar accessory protein FlaH; Validated	85.77
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	85.73
PRK08769		319	DNA polymerase III subunit delta'; Validated	85.39
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	85.32
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	85.13
CHL00195		489	ycf46 Ycf46; Provisional	85.07
KOG0739		439	consensus AAA+-type ATPase [Posttranslational modi	85.02
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	84.83
PRK08116		268	hypothetical protein; Validated	84.73
cd01125		239	repA Hexameric Replicative Helicase RepA. RepA is	84.68
KOG0738		491	consensus AAA+-type ATPase [Posttranslational modi	84.59
KOG0737		386	consensus AAA+-type ATPase [Posttranslational modi	84.51
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	84.41
PRK14712		1623	conjugal transfer nickase/helicase TraI; Provision	84.35
PRK08903		227	DnaA regulatory inactivator Hda; Validated	84.32
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	84.3
PRK07471		365	DNA polymerase III subunit delta'; Validated	84.25
PLN00020		413	ribulose bisphosphate carboxylase/oxygenase activa	84.16
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	84.12
COG1222		406	RPT1 ATP-dependent 26S proteasome regulatory subun	83.99
PRK04195		482	replication factor C large subunit; Provisional	83.76
TIGR03881		229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	83.74
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	83.71
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	83.65
PRK12422		445	chromosomal replication initiation protein; Provis	83.6
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	83.56
PRK04328		249	hypothetical protein; Provisional	83.48
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	83.44
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	83.18
PTZ00112		1164	origin recognition complex 1 protein; Provisional	83.17
PRK08533		230	flagellar accessory protein FlaH; Reviewed	83.09
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	82.99
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	82.77
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	82.73
CHL00095		821	clpC Clp protease ATP binding subunit	82.7
PTZ00361		438	26 proteosome regulatory subunit 4-like protein; P	82.45
PRK00149		450	dnaA chromosomal replication initiation protein; R	82.32
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	82.09
CHL00176		638	ftsH cell division protein; Validated	82.06
cd01122		271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	81.89
PHA03372		668	DNA packaging terminase subunit 1; Provisional	81.84
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	81.83
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	81.78
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	81.77
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	81.65
PRK05298		652	excinuclease ABC subunit B; Provisional	81.61
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	81.17
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	80.76
COG1484		254	DnaC DNA replication protein [DNA replication, rec	80.57
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	80.4
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	80.26
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	80.25

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

Probab=100.00  E-value=1e-89  Score=741.70  Aligned_cols=510  Identities=35%  Similarity=0.516  Sum_probs=433.5

Q ss_pred             CceeecCCCCeeeEEecCChHHHHHHHhc--cCCceeeccCcccHHHHHhccccccCCCCCCCCCCCCChhhHhhhhcCC
Q 001912          116 SHYTQNNSGGKACVYKLRDYNPVLTCLKN--SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL  193 (997)
Q Consensus       116 ~~~~q~~~~~~~~~f~l~dy~~l~~~Lk~--l~~v~~e~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (997)
                      ..+..|+.+++.|.+..+||-.+...+++  ...+.++++|...               |...  +..++.....+..-+
T Consensus       129 ~d~r~yDvkk~sw~~~~sd~v~v~~i~k~~~avkv~ld~lp~~~---------------l~~a--~~~~ea~~~~l~ev~  191 (689)
T KOG1000|consen  129 VDSRNYDVKKRSWTVASSDHVTVSNILKNATAVKVELDPLPQNI---------------LGLA--NFKPEAAPSDLNEVM  191 (689)
T ss_pred             cchhccccccceeEEecccceeeecchhhhhcceeeeccccccc---------------eehh--ccCCccCHHHHhhcc
Confidence            56677888899999999998777444433  3345566666443               2211  122222333344457


Q ss_pred             ChhhhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCce
Q 001912          194 PKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD  273 (997)
Q Consensus       194 p~~l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~  273 (997)
                      |+.|...|.|||++||.|++++|||+|||||||||||+|||+++.+|+.+||+|||||+++...|++++.+|+|.+.+  
T Consensus       192 d~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~p--  269 (689)
T KOG1000|consen  192 DPKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIHP--  269 (689)
T ss_pred             CHHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhcccccc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998876  


Q ss_pred             EEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912          274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS  353 (997)
Q Consensus       274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT  353 (997)
                      |+++.++++...++-.+..|+|+||+++....+.+...+|.+||+||+|++|++++    ++++++..+..+++|+|+||
T Consensus       270 i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~skt----kr~Ka~~dllk~akhvILLS  345 (689)
T KOG1000|consen  270 IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKT----KRTKAATDLLKVAKHVILLS  345 (689)
T ss_pred             eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccch----hhhhhhhhHHHHhhheEEec
Confidence            88888888888777778899999999999999999888899999999999998664    45899999999999999999


Q ss_pred             ccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhcc
Q 001912          354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ  433 (997)
Q Consensus       354 GTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~  433 (997)
                      |||...+|.|||.++..+++.+|.. +++|..+||+...+     ..+.|++++.|+.||+.+|.+.+||||+|++|+.+
T Consensus       346 GTPavSRP~elytqi~avd~tlfp~-f~efa~rYCd~k~v-----r~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q  419 (689)
T KOG1000|consen  346 GTPAVSRPSELYTQIRAVDHTLFPN-FHEFAIRYCDGKQV-----RFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ  419 (689)
T ss_pred             CCcccCCchhhhhhhhhhccccccc-HHHHHHHhcCcccc-----ceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998876 57999999998755     36689999999999999999999999999999999


Q ss_pred             CCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCc
Q 001912          434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP  513 (997)
Q Consensus       434 LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~  513 (997)
                      ||||+++ |.+.....+.....+++....+....+.           ......+  ..+.|+..+++|+.++.+|+..|+
T Consensus       420 LPpKrr~-Vv~~~~gr~da~~~~lv~~a~~~t~~~~-----------~e~~~~~--l~l~y~~tgiaK~~av~eyi~~~~  485 (689)
T KOG1000|consen  420 LPPKRRE-VVYVSGGRIDARMDDLVKAAADYTKVNS-----------MERKHES--LLLFYSLTGIAKAAAVCEYILENY  485 (689)
T ss_pred             CCccceE-EEEEcCCccchHHHHHHHHhhhcchhhh-----------hhhhhHH--HHHHHHHhcccccHHHHHHHHhCc
Confidence            9999544 4455565555555555544433100000           0001111  235688999999999999999998


Q ss_pred             cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 001912          514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG  593 (997)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg  593 (997)
                      .+          ...++.|+|||+||..++|.|+.++.++++.++||||++++.+|+.+++.|+.+.+++|+++|..|+|
T Consensus       486 ~l----------~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~g  555 (689)
T KOG1000|consen  486 FL----------PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAG  555 (689)
T ss_pred             cc----------ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecc
Confidence            87          34679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhc
Q 001912          594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIA  673 (997)
Q Consensus       594 ~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~  673 (997)
                      +||+|++|+.|||++++|||+.+.||+||+||+||+..|.||+|+++||+||.+|+.+++|++.+.++-.|..+. +..+
T Consensus       556 vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~~-~~~e  634 (689)
T KOG1000|consen  556 VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDTF-RTAE  634 (689)
T ss_pred             cceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCcccc-eeec
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887665 5444


Q ss_pred             hhhhhc
Q 001912          674 VEGVSY  679 (997)
Q Consensus       674 ~~~~~~  679 (997)
                      .-++++
T Consensus       635 ~~g~s~  640 (689)
T KOG1000|consen  635 KMGLSF  640 (689)
T ss_pred             ccceee
Confidence            444444

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP)	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13826 Dtr system oriT relaxase; Provisional	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PHA03368 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK11823 DNA repair protein RadA; Provisional	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2	Back alignment and domain information

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00293 thymidine kinase; Provisional	Back alignment and domain information

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>TIGR00416 sms DNA repair protein RadA	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional	Back alignment and domain information

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK00807 50S ribosomal protein L24e; Validated	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated	Back alignment and domain information

>PRK00771 signal recognition particle protein Srp54; Provisional	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>CHL00195 ycf46 Ycf46; Provisional	Back alignment and domain information

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>cd01125 repA Hexameric Replicative Helicase RepA	Back alignment and domain information

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>PRK04328 hypothetical protein; Provisional	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases	Back alignment and domain information

>PHA03372 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

Homologous Structure Templates