Citrus Sinensis ID: 002026
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 978 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LT25 | 835 | Pre-mRNA-processing prote | yes | no | 0.751 | 0.880 | 0.575 | 0.0 | |
| Q8CGF7 | 1100 | Transcription elongation | yes | no | 0.599 | 0.532 | 0.284 | 1e-58 | |
| O14776 | 1098 | Transcription elongation | yes | no | 0.606 | 0.540 | 0.281 | 2e-58 | |
| B6EUA9 | 958 | Pre-mRNA-processing prote | no | no | 0.387 | 0.395 | 0.290 | 1e-33 | |
| Q9R1C7 | 953 | Pre-mRNA-processing facto | no | no | 0.389 | 0.399 | 0.258 | 8e-30 | |
| F4JCC1 | 992 | Pre-mRNA-processing prote | no | no | 0.402 | 0.397 | 0.270 | 5e-25 | |
| Q5VWI1 | 586 | Transcription elongation | no | no | 0.247 | 0.412 | 0.291 | 8e-22 | |
| Q3B807 | 590 | Transcription elongation | no | no | 0.134 | 0.223 | 0.441 | 9e-22 | |
| O75400 | 957 | Pre-mRNA-processing facto | no | no | 0.449 | 0.459 | 0.248 | 3e-20 | |
| P34600 | 724 | WW domain-containing prot | no | no | 0.434 | 0.587 | 0.221 | 9e-17 |
| >sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1 | Back alignment and function desciption |
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Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/779 (57%), Positives = 572/779 (73%), Gaps = 44/779 (5%)
Query: 184 FVTPQTQAPPGLLTLRTKDTSSAF-GDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYP 242
F P T APPGL+T + AF G S RP + A N G I +YP Y
Sbjct: 94 FGRPGTLAPPGLMT-----SPPAFPGSNPFSTTPRPGMSAGPAQMNPG--IHPHMYPPYH 146
Query: 243 SLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGL 302
SLP +PQG L+PP MG P PFL +P +P +P P G+ +P++ + P G
Sbjct: 147 SLP---GTPQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGI-SPNLPYSGSHPLGA 202
Query: 303 SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGAS-VNEQLDAWTA 361
S + + A+PG Q + G K E + + R G+ V +LDAWTA
Sbjct: 203 SPMGSVGNVH--ALPGRQPDISPGR---------KTEELSGIDDRAGSQLVGNRLDAWTA 251
Query: 362 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKK 421
HK++ G++YYYN+VTG+STYEKP GF GEPDKVPVQP P+SME L GTDWALV+TNDGKK
Sbjct: 252 HKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKK 311
Query: 422 YYYNSKMKVSSWQIPSEVTELKKKEDDDTLKE-QSVPNTNIVIEKGSNAISLSSPAVNTG 480
YYYN+K KVSSWQIP+EV + KK ++ ++ SVP+ ++ EKGS+ SLS+PA++ G
Sbjct: 312 YYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLT-EKGSDLTSLSAPAISNG 370
Query: 481 GRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKG 540
GRDA +L+T++ SSALDL+KKKL DSG P +S TSE+N K EVT G
Sbjct: 371 GRDAASLKTTNF--GSSALDLVKKKLHDSGMPVSS-------TITSEANSGKTTEVTPSG 421
Query: 541 LQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKE 600
++ N+ K+KD G G +SDSSSDSED ++GP+KEEC +FKEMLKERG+APFSKWEKE
Sbjct: 422 -ESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKE 480
Query: 601 LPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDI 660
LPKI+FDPRFKAI S S RR+LFE+YVKTRAEEER+EKRAA KAAIEGF+QLL++ S DI
Sbjct: 481 LPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDI 540
Query: 661 DHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSM 720
D TDY+ FKKKWG+D RFEA++RK+RE LLNERVL LKR+AE+KAQ IRAAAAS FK+M
Sbjct: 541 DQHTDYRAFKKKWGNDLRFEAIERKEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTM 600
Query: 721 LREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARR 780
LRE+ +I+++S WSKVKD LR++PRY+SV HEDREV + EY+ ELKAA+ + E KA R
Sbjct: 601 LRER-EISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEYIAELKAAQRGDDHEMKA-R 658
Query: 781 EEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRP 840
+E++KL+ERERE+RKRKERE QE+ERVR K+RRKEA +S+QALLVE I+DP+ASWTES+P
Sbjct: 659 DEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKP 718
Query: 841 KLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGK 900
LE+DPQ RA+N DL+ +D+EKLFR+H+K+LYERC HDF+ LLAE +++EAA +TEDGK
Sbjct: 719 ILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGK 778
Query: 901 TVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSR 959
T LNSWSTAK+VLKP+ RYSKMPR++RE +WRR+ E+I RK Q +N+++ K R
Sbjct: 779 TALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRK------QRHENYQEEKQR 831
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Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 | Back alignment and function description |
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| >sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 | Back alignment and function description |
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| >sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens GN=TCERG1L PE=2 SV=2 | Back alignment and function description |
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| >sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus GN=Tcerg1l PE=2 SV=3 | Back alignment and function description |
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| >sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 | Back alignment and function description |
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| >sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 978 | ||||||
| 359473511 | 1046 | PREDICTED: transcription elongation regu | 0.988 | 0.924 | 0.606 | 0.0 | |
| 255549485 | 886 | Pre-mRNA-processing protein PRP40, putat | 0.873 | 0.963 | 0.643 | 0.0 | |
| 356540998 | 1007 | PREDICTED: transcription elongation regu | 0.980 | 0.952 | 0.570 | 0.0 | |
| 356544406 | 930 | PREDICTED: transcription elongation regu | 0.925 | 0.973 | 0.572 | 0.0 | |
| 449447994 | 845 | PREDICTED: pre-mRNA-processing protein 4 | 0.844 | 0.977 | 0.596 | 0.0 | |
| 356541002 | 857 | PREDICTED: transcription elongation regu | 0.822 | 0.938 | 0.641 | 0.0 | |
| 357473833 | 1013 | Transcription elongation regulator [Medi | 0.889 | 0.858 | 0.571 | 0.0 | |
| 297830652 | 835 | hypothetical protein ARALYDRAFT_898376 [ | 0.754 | 0.883 | 0.584 | 0.0 | |
| 115482600 | 1078 | Os10g0485000 [Oryza sativa Japonica Grou | 0.805 | 0.730 | 0.524 | 0.0 | |
| 449492536 | 628 | PREDICTED: LOW QUALITY PROTEIN: pre-mRNA | 0.581 | 0.906 | 0.697 | 0.0 |
| >gi|359473511|ref|XP_002272014.2| PREDICTED: transcription elongation regulator 1-like [Vitis vinifera] gi|297738259|emb|CBI27460.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1139 bits (2947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1057 (60%), Positives = 753/1057 (71%), Gaps = 90/1057 (8%)
Query: 1 MTSPAWLPPEVQQLTANAPISG----------KPVGGSLVASSTPIAPTSNGSDTATNDS 50
M SPAWLP EVQ + P++G G++ +S TS G+ ++S
Sbjct: 1 MASPAWLPVEVQSSASQNPVTGLPAGGPSGGPPTPTGAIAPASVATIRTSEGASGTASNS 60
Query: 51 ISGPSQAKSVTATGGVIPQSSFSFQN----SEGSGHS----ASSVINSNPSVPPGV---- 98
I +Q K V A V+P SFS+ + SG S + SVI+SNP V
Sbjct: 61 IQESAQGKFVNAPPHVLPGPSFSYSGIPHVTTASGTSQQLPSGSVISSNPLASTVVFQTP 120
Query: 99 ---------SSFTYSASQTVVGYSPNQQFQ-------------PNM-------------- 122
SF+Y+ + G+ +Q FQ PN
Sbjct: 121 VPGPSSSSGPSFSYNIAHKGAGFPGSQPFQSSTSIASGPRGPTPNAASFSFNGNPQLVQK 180
Query: 123 -------NKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIP 175
N ++AG SS S SQ V S ST++ SS+ + TT WMP+ P
Sbjct: 181 DQTLKSDNSGAVAQEAGSMSSASHVSQSVPFPC---SSSTMSVSSSPKMGPTTLWMPSNP 237
Query: 176 SFSTPPGL----------FVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSA 225
SF P G+ + P T L SA DF SS R P+A
Sbjct: 238 SFPVPSGMPVTPGTPGPPGIAPSTPLSSNLA------VPSASMDFSSSVVSRAIF--PAA 289
Query: 226 PSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAH 285
P +S AIQ QIYP+Y SLP S QGP L+PPQMG P PF+PYPA YP+PFPLPAH
Sbjct: 290 PVSSNPAIQQQIYPSYSSLPATNASSQGPWLQPPQMGGLPRPPFVPYPAVYPTPFPLPAH 349
Query: 286 GMPNPSVSQIDAQPPGLSSVRTAAATSHS-AIPGHQLVGTSGN-TEAPPSGTDKKEHVHD 343
GMP PSV D+QPPG++ V TA T S A+ GH L TSG +E PP G D +HV+
Sbjct: 350 GMPLPSVPLPDSQPPGVTPVGTAGGTPISAAVSGHHLANTSGMLSELPPPGIDDNKHVNG 409
Query: 344 VSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISM 403
++ GA+VNEQ+DAWTAHKTDTG+VYYYNA+TGESTYEKP+ FKGE DKV VQPTP+S
Sbjct: 410 AGTKDGAAVNEQVDAWTAHKTDTGVVYYYNALTGESTYEKPSDFKGEADKVTVQPTPVSW 469
Query: 404 EHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSV--PNTNI 461
E LTGTDWALVTTNDGKKYYYN+K K+SSWQIP+E+TE++KK+D LKE ++ PNTN+
Sbjct: 470 EKLTGTDWALVTTNDGKKYYYNTKTKLSSWQIPTELTEMRKKQDSVALKEHAMLAPNTNV 529
Query: 462 VIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSS 521
EKG + I+LS+PAV TGGRDAT LRTS++PGS+SALD+IKKKLQDSG P S SS
Sbjct: 530 STEKGPSPIALSAPAVTTGGRDATPLRTSAVPGSASALDMIKKKLQDSGAPATSSPVHSS 589
Query: 522 AAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIK 581
SE NGS+ +E TVKGLQ+EN+KDKLKD NGDG MSDSSSDSED ++GPTKEECII+
Sbjct: 590 GPIASELNGSRVIEPTVKGLQSENSKDKLKDTNGDGNMSDSSSDSEDVDSGPTKEECIIQ 649
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAA 641
FKEMLKERGVAPFSKWEKELPKIVFDPRFKAI SARR+LFE YV+TRAEEERKEKRAA
Sbjct: 650 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPGYSARRSLFEHYVRTRAEEERKEKRAA 709
Query: 642 QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRA 701
Q+AAIEGFKQLLEE SEDIDH T+YQTF+KKWG DPRFEALDRKDRELLLNERVLPLKRA
Sbjct: 710 QRAAIEGFKQLLEEASEDIDHKTEYQTFRKKWGDDPRFEALDRKDRELLLNERVLPLKRA 769
Query: 702 AEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEY 761
AEEKAQAIRAAA SSFKSMLR+KGDIT S+RWS+VKD LR+DPRYK V+HEDRE++FNEY
Sbjct: 770 AEEKAQAIRAAAVSSFKSMLRDKGDITTSTRWSRVKDSLRNDPRYKCVKHEDREILFNEY 829
Query: 762 VRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQ 821
+ ELKAAEEE EREAK+++EEQ+KLKERERE+RKRKEREEQEMERVRLKVRRKEAV+S+Q
Sbjct: 830 ISELKAAEEEVEREAKSKKEEQDKLKERERELRKRKEREEQEMERVRLKVRRKEAVSSYQ 889
Query: 822 ALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 881
ALLVETIKDPQ SWTES+PKLEKDPQ RATN+DLD SD EKLFREHIK L+ER AH+FR
Sbjct: 890 ALLVETIKDPQVSWTESKPKLEKDPQARATNSDLDPSDLEKLFREHIKMLHERRAHEFRA 949
Query: 882 LLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRK 941
LL+EV+TAEAA QETEDGKTVL SWSTAKR+L+ + RY KMPRK+RE++WRR++EE+ RK
Sbjct: 950 LLSEVLTAEAATQETEDGKTVLTSWSTAKRLLRSDTRYIKMPRKDRESVWRRYSEEMLRK 1009
Query: 942 HKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR 978
K + DQ E+ H + K RSS D GR PS SRR ERR
Sbjct: 1010 QKLAQDQTEEKHTEVKGRSSVDSGRFPSGSRRAHERR 1046
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549485|ref|XP_002515795.1| Pre-mRNA-processing protein PRP40, putative [Ricinus communis] gi|223545064|gb|EEF46576.1| Pre-mRNA-processing protein PRP40, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356540998|ref|XP_003538971.1| PREDICTED: transcription elongation regulator 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356544406|ref|XP_003540642.1| PREDICTED: transcription elongation regulator 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449447994|ref|XP_004141751.1| PREDICTED: pre-mRNA-processing protein 40C-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356541002|ref|XP_003538973.1| PREDICTED: transcription elongation regulator 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357473833|ref|XP_003607201.1| Transcription elongation regulator [Medicago truncatula] gi|355508256|gb|AES89398.1| Transcription elongation regulator [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297830652|ref|XP_002883208.1| hypothetical protein ARALYDRAFT_898376 [Arabidopsis lyrata subsp. lyrata] gi|297329048|gb|EFH59467.1| hypothetical protein ARALYDRAFT_898376 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|115482600|ref|NP_001064893.1| Os10g0485000 [Oryza sativa Japonica Group] gi|78708826|gb|ABB47801.1| FF domain containing protein, expressed [Oryza sativa Japonica Group] gi|113639502|dbj|BAF26807.1| Os10g0485000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|449492536|ref|XP_004159026.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing protein 40C-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 978 | ||||||
| UNIPROTKB|F1RM10 | 1068 | TCERG1 "Uncharacterized protei | 0.182 | 0.166 | 0.364 | 1e-39 | |
| UNIPROTKB|F1NT10 | 1019 | TCERG1 "Uncharacterized protei | 0.216 | 0.208 | 0.337 | 2e-39 | |
| UNIPROTKB|O14776 | 1098 | TCERG1 "Transcription elongati | 0.182 | 0.162 | 0.364 | 3.1e-39 | |
| UNIPROTKB|F1MKU9 | 1062 | TCERG1 "Uncharacterized protei | 0.182 | 0.167 | 0.364 | 5.4e-39 | |
| RGD|1311748 | 1081 | Tcerg1 "transcription elongati | 0.182 | 0.164 | 0.364 | 1.2e-38 | |
| MGI|MGI:1926421 | 1100 | Tcerg1 "transcription elongati | 0.182 | 0.161 | 0.364 | 1.7e-38 | |
| WB|WBGene00022855 | 914 | tcer-1 [Caenorhabditis elegans | 0.188 | 0.201 | 0.317 | 3.8e-28 | |
| UNIPROTKB|F1NQH4 | 1076 | PRPF40A "Uncharacterized prote | 0.552 | 0.501 | 0.227 | 4.5e-27 | |
| ZFIN|ZDB-GENE-030131-274 | 851 | prpf40a "PRP40 pre-mRNA proces | 0.179 | 0.206 | 0.304 | 3e-26 | |
| TAIR|locus:2194894 | 958 | PRP40A "pre-mRNA-processing pr | 0.544 | 0.556 | 0.217 | 4.3e-26 |
| UNIPROTKB|F1RM10 TCERG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 1.0e-39, Sum P(3) = 1.0e-39
Identities = 67/184 (36%), Positives = 93/184 (50%)
Query: 581 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 640
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 635 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 693
Query: 641 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 699
FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 694 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 751
Query: 700 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 758
S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 752 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 810
Query: 759 NEYV 762
+Y+
Sbjct: 811 KQYI 814
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| UNIPROTKB|F1NT10 TCERG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O14776 TCERG1 "Transcription elongation regulator 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MKU9 TCERG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1311748 Tcerg1 "transcription elongation regulator 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1926421 Tcerg1 "transcription elongation regulator 1 (CA150)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| WB|WBGene00022855 tcer-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NQH4 PRPF40A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-274 prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| TAIR|locus:2194894 PRP40A "pre-mRNA-processing protein 40A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LT25 | PR40C_ARATH | No assigned EC number | 0.5750 | 0.7515 | 0.8802 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 978 | |||
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 3e-20 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 1e-12 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 4e-11 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 9e-10 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 1e-08 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 4e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| pfam00397 | 30 | pfam00397, WW, WW domain | 1e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-06 | |
| cd00201 | 31 | cd00201, WW, Two conserved tryptophans domain; als | 2e-06 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 4e-06 | |
| smart00456 | 33 | smart00456, WW, Domain with 2 conserved Trp (W) re | 4e-06 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 8e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-06 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 3e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-05 | |
| COG1390 | 194 | COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su | 6e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| pfam13908 | 177 | pfam13908, Shisa, Wnt and FGF inhibitory regulator | 1e-04 | |
| cd00201 | 31 | cd00201, WW, Two conserved tryptophans domain; als | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| pfam00397 | 30 | pfam00397, WW, WW domain | 6e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.001 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.001 | |
| smart00456 | 33 | smart00456, WW, Domain with 2 conserved Trp (W) re | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.002 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 0.002 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.002 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam06098 | 288 | pfam06098, Radial_spoke_3, Radial spoke protein 3 | 0.004 | |
| pfam13300 | 88 | pfam13300, DUF4078, Domain of unknown function (DU | 0.004 |
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 3e-20
Identities = 82/424 (19%), Positives = 156/424 (36%), Gaps = 58/424 (13%)
Query: 349 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG-FKGEPDKVPVQPTPISMEHLT 407
G + E W K G +YYYN TG+S++EKP KG + + V P
Sbjct: 7 GMASGEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDP--------- 57
Query: 408 GTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGS 467
W T DGK YYYNS + S W+IP E +KK + + + +I
Sbjct: 58 ---WKECRTADGKVYYYNSITRESRWKIPPE----RKKVEP---IAEQKHDERSMIGGNG 107
Query: 468 NAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSE 527
N ++++ + R S G +S D + + T + + ++
Sbjct: 108 NDMAITDHETSEPKYLLG--RLMSQYGITSTKDAVYRL-----TKEEAEKEFITMLKENQ 160
Query: 528 SNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSD--------SSSDSEDGETGPTKEECI 579
+ + + ++ L++ D + + E+ + E
Sbjct: 161 VDSTWPIFRAIEELRDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINE-- 218
Query: 580 IKFKEMLK-ERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEK 638
F +ML + ++ W P + ++ ++ +R F++Y E+
Sbjct: 219 --FCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVG 276
Query: 639 RAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPR------FEALDRKDRELLLN 692
+ A+ +++L + + + + S R + LDRKD
Sbjct: 277 KHMGGTALGRLEEVLRSLGSET--FIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFI 334
Query: 693 ERVLPLKRAAEEKAQAIRAAAAS-------SFKSMLRE---KGDITLSSRWSKVKDILRD 742
V L++ + +AAAA F+++LR+ +G I +W +++D
Sbjct: 335 RYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRMKWKNAYPLIKD 394
Query: 743 DPRY 746
DPR+
Sbjct: 395 DPRF 398
|
Length = 590 |
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215899 pfam00397, WW, WW domain | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator | Back alignment and domain information |
|---|
| >gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|215899 pfam00397, WW, WW domain | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3 | Back alignment and domain information |
|---|
| >gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 978 | |||
| KOG0155 | 617 | consensus Transcription factor CA150 [Transcriptio | 100.0 | |
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 100.0 | |
| KOG0155 | 617 | consensus Transcription factor CA150 [Transcriptio | 100.0 | |
| KOG0152 | 463 | consensus Spliceosomal protein FBP11/Splicing fact | 99.96 | |
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 99.93 | |
| KOG0152 | 463 | consensus Spliceosomal protein FBP11/Splicing fact | 99.67 | |
| KOG4271 | 1100 | consensus Rho-GTPase activating protein [Signal tr | 99.43 | |
| PF01846 | 51 | FF: FF domain; InterPro: IPR002713 The FF domain m | 99.08 | |
| smart00441 | 55 | FF Contains two conserved F residues. A novel moti | 99.01 | |
| PF01846 | 51 | FF: FF domain; InterPro: IPR002713 The FF domain m | 98.66 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.64 | |
| smart00441 | 55 | FF Contains two conserved F residues. A novel moti | 98.63 | |
| KOG4271 | 1100 | consensus Rho-GTPase activating protein [Signal tr | 98.59 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.41 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.4 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 98.35 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 98.33 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 98.19 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.17 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 98.02 | |
| KOG3259 | 163 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 97.36 | |
| KOG1891 | 271 | consensus Proline binding protein WW45 [General fu | 97.31 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.0 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 96.95 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 96.9 | |
| KOG3259 | 163 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 96.86 | |
| KOG1830 | 518 | consensus Wiskott Aldrich syndrome proteins [Cytos | 96.44 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 96.28 | |
| KOG3671 | 569 | consensus Actin regulatory protein (Wiskott-Aldric | 96.25 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 96.15 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 95.95 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.95 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 95.79 | |
| KOG0119 | 554 | consensus Splicing factor 1/branch point binding p | 95.69 | |
| KOG0119 | 554 | consensus Splicing factor 1/branch point binding p | 95.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 95.51 | |
| KOG3671 | 569 | consensus Actin regulatory protein (Wiskott-Aldric | 95.41 | |
| KOG1830 | 518 | consensus Wiskott Aldrich syndrome proteins [Cytos | 95.35 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 95.31 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 95.22 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 95.15 | |
| KOG0940 | 358 | consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos | 93.72 | |
| KOG2375 | 756 | consensus Protein interacting with poly(A)-binding | 93.07 | |
| PF03154 | 982 | Atrophin-1: Atrophin-1 family; InterPro: IPR002951 | 91.94 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 91.23 | |
| PHA03378 | 991 | EBNA-3B; Provisional | 90.38 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 89.76 | |
| KOG0150 | 336 | consensus Spliceosomal protein FBP21 [RNA processi | 89.73 | |
| KOG3209 | 984 | consensus WW domain-containing protein [General fu | 89.1 | |
| KOG0702 | 524 | consensus Predicted GTPase-activating protein [Sig | 86.78 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 86.43 | |
| KOG4592 | 728 | consensus Uncharacterized conserved protein [Funct | 85.56 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 84.2 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 82.43 | |
| KOG0150 | 336 | consensus Spliceosomal protein FBP21 [RNA processi | 81.35 |
| >KOG0155 consensus Transcription factor CA150 [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-81 Score=692.54 Aligned_cols=595 Identities=31% Similarity=0.473 Sum_probs=472.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccCCCCCCccccCCCCCCCCCCCCCCc
Q 002026 258 PPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDK 337 (978)
Q Consensus 258 pp~~~~~~~~p~~~y~~~~~g~~~~p~~g~~~~~~~~p~~~ppg~~~~g~~~~~~~~~~~g~q~~~t~g~~~~~~~~~~~ 337 (978)
+|.|++.+++| +.++.|++|.|+|..+.+. +.....+.|.|+.+.+..+++.+ -++. .||-
T Consensus 1 ~p~~~~~~~ap--s~wtef~ap~G~pyy~ns~-t~~st~ekP~~l~~~~s~~~~~~--~p~~----sp~~---------- 61 (617)
T KOG0155|consen 1 MPHGQIPMSAP--SGWTEFKAPDGIPYYWNSE-TLESTWEKPSFLEKNESSGVTAS--EPSL----SPAI---------- 61 (617)
T ss_pred CCCCCCCCCCC--CCCccCCCCCCcceecccc-cccchhhCchhhhhccccCcccc--CCcc----Ccch----------
Confidence 46777788888 8899999999999999883 43366667888888776665321 0111 2221
Q ss_pred ccccccccccccccccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcC
Q 002026 338 KEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTN 417 (978)
Q Consensus 338 ~~~~~~~~~~~~~a~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~ 417 (978)
+. .+...|+.+..+.|-.||||..+ +.+.|....+...+.+.+|.+. .+++|++||.|||+
T Consensus 62 -------------~~-~~~~t~~~~~~e~~~~k~~~s~~---~~ee~~~~~~~~kk~p~rPi~~--~~ipgtdWcVVwTg 122 (617)
T KOG0155|consen 62 -------------AE-AQQKTSSNAFGENPSEKLFVSEN---AAEERKNSRAARKKLPDRPIFK--KPIPGTDWCVVWTG 122 (617)
T ss_pred -------------hh-hhhhhhhccCCcchHHHHHhCcc---hhhcCCCcccccccCCCCCCCC--CCCCCCCeEEEEeC
Confidence 00 12456999999999999999988 8999998888777766666554 35899999999999
Q ss_pred CCceEEEeCCCCeeeccCChhHHHhhhhcchhhhhhcCCCCcchhhcccCCcccCCCCCccCCCCCccccccCCCCCCch
Q 002026 418 DGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSS 497 (978)
Q Consensus 418 dGr~YyyN~~T~~S~We~P~el~~l~~k~e~~~~ke~s~p~~~v~~e~~~~~~~~~apa~~~~g~~~~~~k~~~~~~~~s 497 (978)
|||+||||+.|+.|+|++|.++.+. .+.+.+- +.|... .++.++....+.+|+.+.++.+..... +.
T Consensus 123 D~RvFFyNpktk~S~We~P~dlk~r---~dvdkii--s~Ppsk-k~eees~kt~~eap~~s~~~~~~aed~-------~~ 189 (617)
T KOG0155|consen 123 DNRVFFYNPKTKLSVWERPLDLKGR---LDVDKII--SKPPSK-KQEEESKKTNHEAPHESRHLQTEAEDP-------SG 189 (617)
T ss_pred CCceEEeCCccccccccCchhhccc---ccHHHHh--cCCcch-hhhhhcccccCCCcchhccccchhccC-------cc
Confidence 9999999999999999999998753 2332221 223221 233444445566776665555432211 11
Q ss_pred hHHHHHhhhccCCCCCCCCCCCCcccccccC-CCCccchhhhcccccccchhhhcccCCCCCCCCCCCCCCCCCCCCCHH
Q 002026 498 ALDLIKKKLQDSGTPTASPAPVSSAAATSES-NGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKE 576 (978)
Q Consensus 498 a~d~~kkk~~~s~~p~~sp~~~~~~~~~~e~-~~s~~~~~t~~~~~~e~~~~K~kd~~~~~~~s~~ssdseeee~~~skE 576 (978)
..+....+...++.++.. ....+. ++. + ..+.....+.+.+.+++...+++|
T Consensus 190 ~~d~~~sEe~~E~~~vk~-------kk~ke~~~~~---------l-----------q~e~~~~~eas~da~~e~~~vplE 242 (617)
T KOG0155|consen 190 KEDVSYSEEFYEDSDVKE-------KKEKEHSAGE---------L-----------QPEQLAAEEASYDAAEERTNVPLE 242 (617)
T ss_pred hhhhhHHHhhhccCchhh-------hhhccccccC---------C-----------CccccchhhhccccccccccCCHH
Confidence 334443333344433221 000000 000 0 001112233456677788899999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002026 577 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEV 656 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~aL~s~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~~LLee~ 656 (978)
|+..+|++||+|+||.+|++||+++++|++||||.+|.+. +||+||++||+.++++++.+++.+.+.|+++|..||.++
T Consensus 243 er~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s~-~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~ 321 (617)
T KOG0155|consen 243 ERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSG-ERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEA 321 (617)
T ss_pred HHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999987 999999999999999999999999999999999999997
Q ss_pred hcCCCCCccHHHHHHHhcCCchhccCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHH
Q 002026 657 SEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSK 735 (978)
Q Consensus 657 ~~~I~~~T~W~e~~kk~~~DpRfkaLd~-~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsd 735 (978)
.++..++|+.|..+|++|+||++++. +|||.||++||..|++.++++.+..+++++.+|.+||.+. .|+..+.|++
T Consensus 322 --~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~ 398 (617)
T KOG0155|consen 322 --ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSK 398 (617)
T ss_pred --cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhH
Confidence 47888999999999999999999998 9999999999999999999999999999999999999998 4999999999
Q ss_pred HHHHhccCchhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002026 736 VKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRK 814 (978)
Q Consensus 736 vk~~L~~DpRy~aL~~-~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKeReeke~eR~R~k~rr~ 814 (978)
++..|++++||++|+. ++|+.||.+||.+|..+...+..+.+++ ..+++|++|+|||++++.++.+|.+|+|+++++.
T Consensus 399 tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~-r~ea~lrererev~k~~~~q~~e~~rerek~k~~ 477 (617)
T KOG0155|consen 399 TKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREK-RLEAQLREREREVEKELGNQLRERTREREKQKRG 477 (617)
T ss_pred HHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 8999999999999987654433333333 3456799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002026 815 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQ 894 (978)
Q Consensus 815 Ear~~F~aLL~E~v~~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~ek~r~dFr~LL~E~~~~~~~~~ 894 (978)
||.+.|++||+|+|++++.+|.|.+++|++|+|| +.++.|+..++++||+|||+.|+++|+++|+.||.++.
T Consensus 478 e~~~~y~all~d~irs~e~sw~e~rrilrkd~r~-as~~~le~~~keklf~dhiksl~~k~re~f~qllde~~------- 549 (617)
T KOG0155|consen 478 EAEDTYRALLIDLIRSTENSWHEARRILRKDERY-ASCDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEHE------- 549 (617)
T ss_pred HHHHHHHHHHHHHHhCcccchHHhHHHhhccccc-ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------
Confidence 9999999999999999999999999999999995 55678899999999999999999999999999999985
Q ss_pred hhccCCccccCHHHHHHhcCCCcccCCCChhHH--HHHHHHHHHHHHHhhhcccc
Q 002026 895 ETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER--EALWRRHAEEIQRKHKSSLD 947 (978)
Q Consensus 895 ~~~d~~t~~~sW~e~kk~Lk~D~RY~~l~~~eR--e~lf~~~ie~l~~k~k~~~~ 947 (978)
.+|+.+.|.+++++|+++++|.++.+++| +.-|++|++..++..+..|+
T Consensus 550 ----~it~~~~w~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~~~~~~~~d~fr 600 (617)
T KOG0155|consen 550 ----KITPMMRWREAKKIIQEEETFVKIASSERKVERDFRDWQERRHDHLTDEFR 600 (617)
T ss_pred ----hcchHHHHHHhhHHHhhhHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 36778889999999999998888876665 45566666666665555553
|
|
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0155 consensus Transcription factor CA150 [Transcription] | Back alignment and domain information |
|---|
| >KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] | Back alignment and domain information |
|---|
| >smart00441 FF Contains two conserved F residues | Back alignment and domain information |
|---|
| >PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] | Back alignment and domain information |
|---|
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
| >smart00441 FF Contains two conserved F residues | Back alignment and domain information |
|---|
| >KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1891 consensus Proline binding protein WW45 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
| >KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >PHA03378 EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3209 consensus WW domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4592 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 978 | ||||
| 3hfh_A | 190 | Crystal Structure Of Tandem Ff Domains Length = 190 | 2e-12 | ||
| 4fqg_A | 190 | Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat | 4e-10 | ||
| 2dod_A | 82 | Solution Structure Of The First Ff Domain Of Human | 8e-09 | ||
| 2kis_A | 71 | Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2 | 2e-08 | ||
| 2l5f_A | 92 | Solution Structure Of The Tandem Ww Domains From Hy | 6e-07 | ||
| 2jxw_A | 75 | Solution Structure Of The Tandem Ww Domains Of Fbp2 | 2e-05 | ||
| 1o6w_A | 75 | Solution Structure Of The Prp40 Ww Domain Pair Of T | 2e-05 | ||
| 2dof_A | 85 | Solution Structure Of The Fourth Ff Domain Of Human | 5e-05 |
| >pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains Length = 190 | Back alignment and structure |
|
| >pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain Length = 190 | Back alignment and structure |
| >pdb|2DOD|A Chain A, Solution Structure Of The First Ff Domain Of Human Transcription Factor Ca150 Length = 82 | Back alignment and structure |
| >pdb|2KIS|A Chain A, Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2 Interdomain Linker Length = 71 | Back alignment and structure |
| >pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11 Length = 92 | Back alignment and structure |
| >pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21 Length = 75 | Back alignment and structure |
| >pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75 | Back alignment and structure |
| >pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human Transcription Factor Ca150 Length = 85 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
Score = 168 bits (425), Expect = 8e-48
Identities = 69/194 (35%), Positives = 94/194 (48%), Gaps = 6/194 (3%)
Query: 572 GPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRA 631
GP + +F +ML ERGV+ FS WE EL IVFDPR+ + R +F++YV TRA
Sbjct: 1 GPLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNP-XERXQVFDQYVXTRA 59
Query: 632 EEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRK-DRELL 690
EEER+E A E F ++EE + + F D RF A++ DRE L
Sbjct: 60 EEERREXXNXIMQAXEDFXXMMEE--AXFNPRATFSEFAAXHAXDSRFXAIEXMXDREAL 117
Query: 691 LNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVR 750
NE V + E + S F +L + SRWS V D + DPRY +V
Sbjct: 118 FNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRWSXVXDXVESDPRYXAVD 176
Query: 751 HED-REVIFNEYVR 763
RE +F +Y+
Sbjct: 177 SSSMREDLFXQYIE 190
|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Length = 59 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 978 | |||
| 3hfh_A | 190 | Transcription elongation regulator 1; helix bundle | 100.0 | |
| 3hfh_A | 190 | Transcription elongation regulator 1; helix bundle | 99.92 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 99.77 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 99.75 | |
| 2dod_A | 82 | Transcription elongation regulator 1; FF domain, s | 99.73 | |
| 1uzc_A | 71 | Hypothetical protein FLJ21157; nuclear protein, st | 99.68 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 99.64 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 99.62 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 99.61 | |
| 2b7e_A | 59 | PRE-mRNA processing protein PRP40; structural prot | 99.59 | |
| 2dof_A | 85 | Transcription elongation regulator 1; FF domain, s | 99.57 | |
| 2juc_A | 59 | PRE-mRNA-splicing factor URN1; FF, helical bundle, | 99.37 | |
| 2doe_A | 83 | Transcription elongation regulator 1; FF domain, s | 99.35 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 99.16 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 99.02 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 99.01 | |
| 2doe_A | 83 | Transcription elongation regulator 1; FF domain, s | 98.87 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.86 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 98.85 | |
| 2cqn_A | 77 | Formin-binding protein 3; FF domain, structural ge | 98.84 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 98.8 | |
| 2cqn_A | 77 | Formin-binding protein 3; FF domain, structural ge | 98.73 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 98.73 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 98.72 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 98.72 | |
| 2dof_A | 85 | Transcription elongation regulator 1; FF domain, s | 98.71 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.7 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 98.7 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 98.65 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 98.64 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.62 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 98.58 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 98.57 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 98.55 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 98.55 | |
| 1uzc_A | 71 | Hypothetical protein FLJ21157; nuclear protein, st | 98.52 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 98.52 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.5 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 98.49 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 98.48 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 98.48 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 98.46 | |
| 2dod_A | 82 | Transcription elongation regulator 1; FF domain, s | 98.46 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 98.44 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 98.44 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 98.44 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 98.42 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 98.42 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 98.39 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 98.39 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 98.38 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 98.34 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.31 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 98.31 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 98.28 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 98.28 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 98.28 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 98.27 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 98.26 | |
| 2juc_A | 59 | PRE-mRNA-splicing factor URN1; FF, helical bundle, | 98.25 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.25 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 98.23 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 98.23 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 98.21 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.2 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 98.19 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.17 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 98.17 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 98.16 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 98.16 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 98.12 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 98.11 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 98.09 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 98.09 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 98.08 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 98.08 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 98.06 | |
| 2b7e_A | 59 | PRE-mRNA processing protein PRP40; structural prot | 98.05 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 98.01 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 97.97 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 97.97 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 97.97 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 97.94 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 97.94 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 97.93 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 97.92 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 97.91 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 97.88 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 97.87 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 97.82 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 97.79 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 97.79 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 97.75 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 97.74 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 97.65 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 97.64 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 97.43 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 97.29 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 97.29 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 96.7 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 96.37 | |
| 2kfd_A | 69 | PRE-mRNA-processing protein PRP40; FF domain, mRNA | 96.1 | |
| 2kfd_A | 69 | PRE-mRNA-processing protein PRP40; FF domain, mRNA | 95.78 | |
| 2k85_A | 69 | Glucocorticoid receptor DNA-binding factor 1; FF d | 95.66 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 95.35 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 94.9 | |
| 2k85_A | 69 | Glucocorticoid receptor DNA-binding factor 1; FF d | 94.1 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 93.88 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 92.32 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 89.09 | |
| 3le4_A | 79 | Microprocessor complex subunit DGCR8; WW motif, di | 80.09 |
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=336.34 Aligned_cols=188 Identities=37% Similarity=0.638 Sum_probs=159.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 572 GPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQ 651 (978)
Q Consensus 572 ~~skEEak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~aL~s~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~~ 651 (978)
|+++|||+++|++||++++|+++|+|+++|++|++||||.+| +..+||++|++||.+++++++++++.+.+.++++|++
T Consensus 1 ~~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~ 79 (190)
T 3hfh_A 1 GPLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXX 79 (190)
T ss_dssp -CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999 7999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCccHHHHHHHhcCCchhccCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 002026 652 LLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLS 730 (978)
Q Consensus 652 LLee~~~~I~~~T~W~e~~kk~~~DpRfkaLd~-~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~ 730 (978)
||++. .|+++++|.+|.++|.+||||++|.. .||++||++||..|+++++++++..+++++++|.+||.++ .|++.
T Consensus 80 lL~e~--~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~ 156 (190)
T 3hfh_A 80 MMEEA--XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQ 156 (190)
T ss_dssp -----------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTT
T ss_pred HHHHc--CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCC
Confidence 99986 49999999999999999999999987 9999999999999999988888888899999999999999 89999
Q ss_pred CChHHHHHHhccCchhhcCCcc-cHHHHHHHHHH
Q 002026 731 SRWSKVKDILRDDPRYKSVRHE-DREVIFNEYVR 763 (978)
Q Consensus 731 T~Wsdvk~~L~~DpRy~aL~~~-dRe~lFeeyI~ 763 (978)
|+|.+|+..|.+|+||++|+.. +|+.||++||+
T Consensus 157 t~W~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 157 SRWSXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp CCHHHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence 9999999999999999999984 99999999983
|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
| >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
| >2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
| >3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 978 | ||||
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 3e-19 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 8e-14 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 2e-13 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 4e-13 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 1e-06 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 2e-17 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 1e-16 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 4e-15 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 2e-11 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 0.002 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 3e-16 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 2e-15 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 9e-15 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 2e-12 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 4e-15 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 2e-12 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 3e-11 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 4e-07 | |
| d2b7ea1 | 56 | a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP | 5e-13 | |
| d2b7ea1 | 56 | a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP | 9e-05 | |
| d2dk1a1 | 38 | b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP | 2e-11 | |
| d2dk1a1 | 38 | b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP | 6e-06 | |
| d1o6wa1 | 29 | b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y | 6e-09 | |
| d1o6wa1 | 29 | b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y | 5e-05 | |
| d1ywia1 | 28 | b.72.1.1 (A:15-42) Huntingtin-interacting protein | 3e-08 | |
| d1ywia1 | 28 | b.72.1.1 (A:15-42) Huntingtin-interacting protein | 8e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 9e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.001 | |
| d1o6wa2 | 46 | b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's | 2e-07 | |
| d1o6wa2 | 46 | b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's | 4e-05 | |
| d2rm0w1 | 37 | b.72.1.1 (W:1-37) Formin binding protein FBP28 dom | 2e-07 | |
| d2rm0w1 | 37 | b.72.1.1 (W:1-37) Formin binding protein FBP28 dom | 4e-06 | |
| d2cqna1 | 64 | a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapi | 4e-07 | |
| d2cqna1 | 64 | a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapi | 3e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-05 | |
| d1pina1 | 34 | b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho | 6e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.004 |
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Another 3-helical bundle superfamily: FF domain family: FF domain domain: Transcription elongation regulator 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (199), Expect = 3e-19
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 805 ERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLF 864
+R R + +R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF
Sbjct: 1 DREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLF 59
Query: 865 REHIKTLYER 874
EHI+ L ++
Sbjct: 60 NEHIEALTKK 69
|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 | Back information, alignment and structure |
|---|
| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 978 | |||
| d2b7ea1 | 56 | Pre-mRNA-processing protein PRP40 {Baker's yeast ( | 99.6 | |
| d1uzca_ | 69 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2doda1 | 69 | Transcription elongation regulator 1 {Human (Homo | 99.53 | |
| d2doea1 | 70 | Transcription elongation regulator 1 {Human (Homo | 99.42 | |
| d2dofa1 | 72 | Transcription elongation regulator 1 {Human (Homo | 99.32 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 99.19 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 99.16 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 99.15 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 99.13 | |
| d2dofa1 | 72 | Transcription elongation regulator 1 {Human (Homo | 99.1 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 98.94 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.93 | |
| d2doea1 | 70 | Transcription elongation regulator 1 {Human (Homo | 98.92 | |
| d2doda1 | 69 | Transcription elongation regulator 1 {Human (Homo | 98.9 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.86 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 98.85 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 98.8 | |
| d1uzca_ | 69 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 98.69 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.68 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 98.63 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 98.55 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 98.54 | |
| d2cqna1 | 64 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 98.34 | |
| d2cqna1 | 64 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 98.29 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 98.11 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 98.06 | |
| d2b7ea1 | 56 | Pre-mRNA-processing protein PRP40 {Baker's yeast ( | 98.05 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 98.04 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 97.69 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 96.71 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 91.41 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 85.1 | |
| d2ysca1 | 26 | Amyloid beta A4 precursor protein-binding family B | 80.61 |
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: Another 3-helical bundle superfamily: FF domain family: FF domain domain: Pre-mRNA-processing protein PRP40 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.4e-16 Score=129.66 Aligned_cols=54 Identities=26% Similarity=0.492 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhccc-ccCchhhcccCh-HHHHHHHHHHHHHH
Q 002026 577 ECIIKFKEMLKERGVAPFSKWEKELPKI-VFDPRFKAIQSQ-SARRALFERYVKTR 630 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~~~stWekal~kI-~~DPRY~aL~s~-~ERKqlFeeYi~er 630 (978)
||+++|++||++++|+++|+|+++|++| ++||||++|.++ .|||++|++||.+|
T Consensus 1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~R 56 (56)
T d2b7ea1 1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 56 (56)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhcC
Confidence 6899999999999999999999999976 679999999765 59999999999753
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| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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