Citrus Sinensis ID: 002095

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------

MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETERVRELLSSSASSPKAVSETVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQVMGSSMGNT

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHcccHHHHHHHcccccccccccccHHHccHHHHHHcccccccccccccccccHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHccccccccccHHHccccHHHHHHHHcccccccHHHcccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccHHccccccHHHccHHHHHHccccHHHcHHHHHHHHHHHccccHHHccccHcHcHHHHcccEHHHHHHccHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccHHHcccccccccccHHHccccHHHHHHHcccccHHHHHHccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

mawfsgkvslgnfpdlagavNKFSESVKNIEKNFDTAlgfdekaeksakpetsssneglwpvmsfmghksegssptessgkpqtpqqqskpeekvgvETERSvhsatgevyadkqkaspktekddehpdtaenLDFVVSehgkvdsesnivpndpsesaiqnidssepvdnqqqkvtsdlgtseetesgeaksgpfeadqiEISSslrdesdnvanacqskdegkkeesnyEEKSQAEEMIETGSPVQAEVSSTIQaevgtessdsqsvsaEETERVRELLSssasspkavsetvcapvspehgekdkAVEVEQQandsgivseeqrlsseanvsvsADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVtqvpestrPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAesaavsektpiarhtsafengslsrklssasslgsmeeSHFLQasldssdslsdrkntveptmspyyvksmtpSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQVMGSSMGNT

mawfsgkvslgnfpdLAGAVNKFSESVKNIEKNFDTALGfdekaeksakpetsssneglWPVMSFMGHKSEGSsptessgkpqtpqqqskpeekvgvetersvhsatgevyadkqkaspktekddehpdtAENLDFVVSEHGKVDSESNIVPNDPSESAIQNidssepvdnqqqkvtsdlgtseetesgeaksgpfeaDQIEIssslrdesdnvanacqskdegkkeesnYEEKSQAEEMIETGSPVQAEVSSTIQaevgtessdsqsvsaEETERVRELlsssasspkavseTVCAPVSPEHGEKDKAVEVEQQAndsgivseeqrlsseanvsvsadsVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYhqrvatlerkvyaltkerdtlrreqnkksdaaallkeKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELeeekkglvtklqveenkvesikrdktaTEKLLQETIEKHqvelgeqkDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQtlsrteqqavfredmlrrDIEDLQRRyqaserrceelvtqvpestrpllRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAaaseerersvnerlsqtlsRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLaakeeadtqegraNQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERrasaesaavsektpiarhtsafengslsRKLSSASSLGSMEESHFLQasldssdslsDRKNtveptmspyyvksMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALElmgerdeeLEELRADIMDLKEMYREQVNLLVNKIQvmgssmgnt

MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETErvrellsssasspkavseTVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTnalaaakeaeelaearannearaelesrlreagereTMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQettarraeawaaverSLNLRLQeaeakaaaseerersVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLerrasaesaaVSEKTPIARHTSAFENGslsrklssasslgsMEESHFLQAsldssdslsdRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAAlelmgerdeeleelRADIMDLKEMYREQVNLLVNKIQVMGSSMGNT

*******VSLGNFPDLAGAVNKF*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YHQRVATLERKVYAL************************************************************************************************************Y****************************************************************************************************I**I********EAWAAV***********************************INVLEAQISCL**************************************************************************************************************************************************************************************************LVKMTAQCEKLRAEAAILPGIQAELDAL**********************ADIMDLKEMYREQVNLLVNKIQV********

*AWFSGKVSLGNFPDLA**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFD***************EGLWPVMSFMGH************************************SATGEV******************DTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDS******************************FEADQIEISSSLRDESDNVANA*******************************************************************************APVSPEHGEKDKAVEVEQQANDSGIVS**************ADSVCELEKLKREMKMMET*************DEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAE***************RKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRL*********************SQTLSRINVLEAQISCLRAEQTQL**************RQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVD***************TPIARHTSAFE**************************************TVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQVMGSSMGNT

*AWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGF******************************************************************************************************************************************DLGTSE*************AD*IEISSSLRDESDNVANACQSKDEG****************************************************VRELLSSSASSPK****TVCAPVSPEH*************************************VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAE***************************************************************PYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQVMG******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWPVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETERVRELLSSSASSPKAVSETVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQNKKSDAAALLKEKDEIINQVMAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPESTRPLLRQIEAIQETTARRAEAWAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIxxxxxxxxxxxxxxxxxxxxxAAILPGIQAELDALRRRHSAALELxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVNKIQVMGSSMGNT

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		967	2.2.26 [Sep-21-2011]
Q0WVL7		956	Golgin candidate 5 OS=Ara	yes	no	0.957	0.968	0.640	0.0
P82094		1093	TATA element modulatory f	yes	no	0.539	0.477	0.302	2e-46
B9EKI3		1091	TATA element modulatory f	yes	no	0.546	0.483	0.297	7e-43

>sp\|Q0WVL7\|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1	Back alignment and function desciption

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/988 (64%), Positives = 757/988 (76%), Gaps = 62/988 (6%)

Query: 1   MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLW 60
           MAWFSGKVSLG FPDL GAVNKF ESVKNIEKNFD ALGFD+K++ +A+   SS    +W
Sbjct: 1   MAWFSGKVSLGGFPDLTGAVNKFQESVKNIEKNFDNALGFDDKSDSAAEDAASS----MW 56

Query: 61  P-----------VMSFMGHKSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATG 108
           P           VMSFMG+ S+    T E S + + P Q  + EE+ G     SV  AT 
Sbjct: 57  PPAVDTKSLFDPVMSFMGNTSDEKPDTLEDSVRTENPSQIEQKEEEAG-----SVKLATE 111

Query: 109 EVYADKQKASPKTEKDDEHPDTAENLDFVVSEHGKVDSESNIVPNDPSESAIQNIDSS-- 166
           +  + +        ++ +  D  E  + VV +    + +S I+  + SE ++Q  +SS  
Sbjct: 112 QAVSVEANKETNVRREADQADNPEVTETVVLDPKDDEPQSQILLEESSEYSLQTPESSGY 171

Query: 167 ----EPVDNQQQKVTSDLGTSEETESGEAK-SGPFEADQIEISSSLRDESDNVANACQSK 221
               +P  N++ ++T+   +  E    EA+ S P +++  E++    +  D V +     
Sbjct: 172 KTSLQP--NEKLEMTASQDSQPEQPKSEAEESQPEDSEAKEVTV---ENKDTVHSPVL-- 224

Query: 222 DEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAEETERVRELL 281
            +G+ + +  +E +  +E++  G  ++   SS    EV   S D   V+          +
Sbjct: 225 -DGQHKITYMDETTNEQEIL--GENLEGRTSSK-NFEV---SPDINHVNR---------I 268

Query: 282 SSSASSPKAVSETVCAPVS---PEHGEKDKAVE-----VEQQAN---DSGIVSEEQRLSS 330
            S  + P  + E+  +P     P+    D+  E     V ++ +   D+  ++E QR SS
Sbjct: 269 ESPVAHPSLIFESDGSPYESSIPKRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSS 328

Query: 331 EANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390
             NVS SAD + ELEK K+E+KM+E ALQGAARQAQAKADEIAK+M+ENE LK+V EDLK
Sbjct: 329 ATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLK 388

Query: 391 RKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 450
           RK+N+AE+E+LREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV
Sbjct: 389 RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 448

Query: 451 MAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLL 510
           MAEGEELSKKQAAQEAQIRKLRAQIRE EEEKKGL+TKLQ EENKVESIKRDKTATEKLL
Sbjct: 449 MAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLL 508

Query: 511 QETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQ 570
           QETIEKHQ EL  QKDYY+NALAAAKEA+ LAE R NNEAR+ELE+RL+EAGERE+MLVQ
Sbjct: 509 QETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQ 568

Query: 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIE 630
           ALEELRQTLS+ EQQAV+REDM R +IEDLQRRYQASERRCEEL+TQVPESTRPLLRQIE
Sbjct: 569 ALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIE 628

Query: 631 AIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690
           A+QET+ R AEAWAAVER+LN RLQEAE+KAA +EERERSVNERLSQTLSRINVLEAQ+S
Sbjct: 629 AMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLS 688

Query: 691 CLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQ 750
           CLRAEQ QL+KSLEKERQRAAENRQEYLAAKEEADT EGRANQLE EI+ELRRKHKQELQ
Sbjct: 689 CLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQ 748

Query: 751 EALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSAS 810
           E L+H EL+Q+++EREK +R+DLER A   S+AVSE+ PIAR  SAFENGSL RKLSSAS
Sbjct: 749 EVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAFENGSLPRKLSSAS 808

Query: 811 SLGSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYM 870
           SLGSMEES+FLQASLDSSD  S++++  E TMSPYY+KS+TPSA+E+ LRQKEGELASYM
Sbjct: 809 SLGSMEESYFLQASLDSSDKFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYM 868

Query: 871 SRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDE 930
           +RLASMESIRDSLAEELVKMTA+CEKLR EA  +PGI+AEL+ALR+RH+AALELMGERDE
Sbjct: 869 TRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDE 928

Query: 931 ELEELRADIMDLKEMYREQVNLLVNKIQ 958
           ELEELRADI+DLKEMYREQVN+LVNKIQ
Sbjct: 929 ELEELRADIVDLKEMYREQVNMLVNKIQ 956

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp\|P82094\|TMF1_HUMAN TATA element modulatory factor OS=Homo sapiens GN=TMF1 PE=1 SV=2	Back alignment and function description

>sp\|B9EKI3\|TMF1_MOUSE TATA element modulatory factor OS=Mus musculus GN=Tmf1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		967
224070913		975	predicted protein [Populus trichocarpa]	0.978	0.970	0.702	0.0
302144021		931	unnamed protein product [Vitis vinifera]	0.951	0.988	0.691	0.0
225455135		978	PREDICTED: golgin candidate 5-like isofo	0.970	0.959	0.674	0.0
359490786		988	PREDICTED: golgin candidate 5-like isofo	0.963	0.943	0.661	0.0
87240431		992	tRNA-binding arm; t-snare [Medicago trun	0.983	0.958	0.646	0.0
145337778		956	golgin candidate 5 [Arabidopsis thaliana	0.957	0.968	0.640	0.0
356556298		988	PREDICTED: golgin candidate 5-like [Glyc	0.979	0.958	0.664	0.0
334184028		976	golgin candidate 5 [Arabidopsis thaliana	0.957	0.948	0.627	0.0
356550526		989	PREDICTED: golgin candidate 5-like [Glyc	0.981	0.959	0.663	0.0
449466821		1016	PREDICTED: golgin candidate 5-like [Cucu	0.981	0.934	0.636	0.0

>gi\|224070913\|ref\|XP_002303293.1\| predicted protein [Populus trichocarpa] gi\|222840725\|gb\|EEE78272.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1238 bits (3204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 698/994 (70%), Positives = 801/994 (80%), Gaps = 48/994 (4%)

Query: 1   MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLW 60
           MAWFSGKVSLGNFPDLAGAVNK SESVKNIEKNFDTALGF++K++ S+  E S    GLW
Sbjct: 1   MAWFSGKVSLGNFPDLAGAVNKLSESVKNIEKNFDTALGFEDKSDSSSTTEAS----GLW 56

Query: 61  PVMSFMGHKSEGSSPTESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKASPK 120
           PVMSFMG+KSE S+  ESSGK  +PQ+ S  EEK       S +S T +  + ++    +
Sbjct: 57  PVMSFMGNKSEDSTD-ESSGKTVSPQKLSTVEEK------ESQNSDTQQTTSAEENQMLE 109

Query: 121 TEKDDEHPDTAENLDFVVSEHGKVDSESNIVPN----DPSESAIQNIDSSEPVDNQQQKV 176
            +KD EHP+ AE  D V+S+ GK + ES I       +P E  + ++   E VD+ Q K 
Sbjct: 110 RKKDAEHPEIAEKKDDVISDTGKAELESEIQSETKAVEPPEPVVHDVKVPESVDDVQGKE 169

Query: 177 TSDLGTSEETESGEAKSGPFEADQIEISSSLRDESDNVANACQSKDEGKKEESNYEEKSQ 236
            S+ G +E  ++ E +S     D++E  S L DES NV++   S DE         +++Q
Sbjct: 170 ISEEGCAENLDTLEVRSEASRVDEVEAPSILHDESHNVSHTPDSTDE---------QEAQ 220

Query: 237 AEEMIETGSPVQAEVSS--------TIQAEVGTE----------------SSDSQSVSAE 272
           AEE +E  S +QAEVS+         +QA+  T+                SS SQ VSAE
Sbjct: 221 AEETVERSSTIQAEVSNEPQPEALNDVQAQASTDILAEASSDTRAGAVLDSSSSQPVSAE 280

Query: 273 ETERVRELLSSSASSPKAVSETVCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEA 332
            +E V E   S AS     SE V   VS      ++ V  +++ ND  I  ++Q LS  +
Sbjct: 281 VSEMVHEFSLSDASPLDEASEIVSGSVSLADDVHNQTVGGDKRVNDGEIDIKDQHLSLRS 340

Query: 333 NVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392
           N+S S DS  ELEK+K EMKMMETALQGAARQAQAKADEIAK+MNENEHLK VIE+LKRK
Sbjct: 341 NISDSIDSTLELEKVKTEMKMMETALQGAARQAQAKADEIAKLMNENEHLKIVIEELKRK 400

Query: 393 TNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMA 452
           +NDAE+E+LREEYHQRVATLERKVYALTKERDTLRRE NKKSDAAALLKEKDEIINQVMA
Sbjct: 401 SNDAEIESLREEYHQRVATLERKVYALTKERDTLRREHNKKSDAAALLKEKDEIINQVMA 460

Query: 453 EGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQE 512
           EGEELSKKQAAQE+ IRKLRAQIRELEEEKKGL+TK+QVEENKVESIK+DKTATE LLQE
Sbjct: 461 EGEELSKKQAAQESTIRKLRAQIRELEEEKKGLMTKVQVEENKVESIKKDKTATENLLQE 520

Query: 513 TIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQAL 572
           TIEKHQ EL  QK YYTNAL+AAKEAE LAEAR NNEAR ELESRLREA ERETMLVQAL
Sbjct: 521 TIEKHQAELSAQKIYYTNALSAAKEAEALAEARVNNEARTELESRLREAEERETMLVQAL 580

Query: 573 EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632
           EELRQTL+R EQQAVFRE+MLRRDIEDLQ+RYQASERRCEEL+TQVP+STRPLLRQIEA+
Sbjct: 581 EELRQTLTRKEQQAVFREEMLRRDIEDLQKRYQASERRCEELITQVPDSTRPLLRQIEAM 640

Query: 633 QETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCL 692
           QETTARRAEAWAAVERSLN RLQEAEAKAA +EERERSVNERLSQTLSRINVLEAQISCL
Sbjct: 641 QETTARRAEAWAAVERSLNSRLQEAEAKAADAEERERSVNERLSQTLSRINVLEAQISCL 700

Query: 693 RAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEA 752
           R+EQTQL++SLEKERQRAAEN+QEYLAAKEEADTQEGRANQLE +IKELR+KHK+E+Q+A
Sbjct: 701 RSEQTQLSRSLEKERQRAAENKQEYLAAKEEADTQEGRANQLEGQIKELRQKHKEEIQDA 760

Query: 753 LMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSL 812
           L++RELLQQEIEREK AR++LER A   SA+ S+KTPIAR  SAFENG+L+RKLSSASSL
Sbjct: 761 LINRELLQQEIEREKAARLELERTAHIHSASASDKTPIARSNSAFENGNLTRKLSSASSL 820

Query: 813 GSMEESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSR 872
           GS+EES+FLQASLD+SDSLS+R+N  E TMSPYY+KSMTPSAFES LRQKEGELASYMSR
Sbjct: 821 GSIEESYFLQASLDTSDSLSERRNPGEATMSPYYMKSMTPSAFESALRQKEGELASYMSR 880

Query: 873 LASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEEL 932
           LASMESIRDSLAEELVKMTAQCEKL+AE+A+LPG++AELDALRRRHSAALELMGERDEEL
Sbjct: 881 LASMESIRDSLAEELVKMTAQCEKLQAESALLPGVRAELDALRRRHSAALELMGERDEEL 940

Query: 933 EELRADIMDLKEMYREQVNLLVNKIQVMGSSMGN 966
           EELRADI+DLKEMYREQVNLLVNKIQ++ +S GN
Sbjct: 941 EELRADIVDLKEMYREQVNLLVNKIQILSTSSGN 974

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302144021\|emb\|CBI23126.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225455135\|ref\|XP_002267350.1\| PREDICTED: golgin candidate 5-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359490786\|ref\|XP_003634167.1\| PREDICTED: golgin candidate 5-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|87240431\|gb\|ABD32289.1\| tRNA-binding arm; t-snare [Medicago truncatula]	Back alignment and taxonomy information

>gi|145337778|ref|NP_178101.3| golgin candidate 5 [Arabidopsis thaliana] gi|186496537|ref|NP_001117622.1| golgin candidate 5 [Arabidopsis thaliana] gi|334184030|ref|NP_001185442.1| golgin candidate 5 [Arabidopsis thaliana] gi|122175613|sp|Q0WVL7.1|GOGC5_ARATH RecName: Full=Golgin candidate 5; Short=AtGC5 gi|110741773|dbj|BAE98831.1| hypothetical protein [Arabidopsis thaliana] gi|164708704|gb|ABY67249.1| putative TMF-like protein [Arabidopsis thaliana] gi|332198186|gb|AEE36307.1| golgin candidate 5 [Arabidopsis thaliana] gi|332198187|gb|AEE36308.1| golgin candidate 5 [Arabidopsis thaliana] gi|332198189|gb|AEE36310.1| golgin candidate 5 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356556298\|ref\|XP_003546463.1\| PREDICTED: golgin candidate 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|334184028\|ref\|NP_001185441.1\| golgin candidate 5 [Arabidopsis thaliana] gi\|332198188\|gb\|AEE36309.1\| golgin candidate 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356550526\|ref\|XP_003543637.1\| PREDICTED: golgin candidate 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|449466821\|ref\|XP_004151124.1\| PREDICTED: golgin candidate 5-like [Cucumis sativus] gi\|449516290\|ref\|XP_004165180.1\| PREDICTED: golgin candidate 5-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		967
ZFIN\|ZDB-GENE-040801-25		1136	tmf1 "TATA element modulatory	0.800	0.681	0.217	4.3e-33
UNIPROTKB\|G3V9T2		1093	Tmf1 "Protein Tmf1" [Rattus no	0.792	0.700	0.210	9.4e-30
UNIPROTKB\|F1MUW6		1094	TMF1 "Uncharacterized protein"	0.722	0.638	0.208	1.6e-29
UNIPROTKB\|F1NHB9		1110	TMF1 "Uncharacterized protein"	0.749	0.653	0.211	1.6e-29
UNIPROTKB\|P82094		1093	TMF1 "TATA element modulatory	0.592	0.524	0.230	3.7e-28
MGI\|MGI:2684999		1091	Tmf1 "TATA element modulatory	0.724	0.642	0.208	3.8e-27
DICTYBASE\|DDB_G0274785		1084	DDB_G0274785 "TMF1-like protei	0.451	0.403	0.196	4.7e-25
UNIPROTKB\|F1SFP6		1088	TMF1 "Uncharacterized protein"	0.466	0.414	0.224	1.2e-26
FB\|FBgn0029912		933	CG4557 [Drosophila melanogaste	0.190	0.197	0.266	8e-22
DICTYBASE\|DDB_G0289719		1419	DDB_G0289719 "SFRS2-interactin	0.451	0.307	0.208	9.7e-18

ZFIN\|ZDB-GENE-040801-25 tmf1 "TATA element modulatory factor 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 396 (144.5 bits), Expect = 4.3e-33, P = 4.3e-33
 Identities = 180/826 (21%), Positives = 334/826 (40%)

Query:   156 SESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPFEADQIEISSS-LRDESDNV 214
             +ES   + D+ E +D+   +       SE     E    P       I++  L   +++V
Sbjct:   340 TESCGSSSDAFERIDSFSVQSLDSRSVSEVNSDDEI---PGNRTLASITAGPLPAPAESV 396

Query:   215 ANACQSKDEGKKEESNYE--EKSQAEEMIETGSPVQAEVSSTIQAEVGTESSDSQSVSAE 272
                 Q ++EG  E  N +  + ++ EE   + +PV  E    +Q EV  E     ++S++
Sbjct:   397 PQTKQEEEEGMIESMNDQSLDDNEMEESGRSATPVNCEQVDELQ-EVDQEPEPDLTMSSQ 455

Query:   273 ETXXXXXXXXXXXXXXXXXXETVCAPVSPEHGEKDKAVEV-EQQANDSGIVSEEQRLSSE 331
             +                   ETV  P+S E    D   ++ E Q     +    ++  S+
Sbjct:   456 KIDVH---------------ETV-TPLSTEEKPGDSPFQISELQKIIEELSGRLEKRESQ 499

Query:   332 ANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391
               ++VS D    LE+    +K    +L+  +   Q+  DE  + + + E  KA +   +R
Sbjct:   500 L-LAVSKDKA-RLEEECDNLKDEVISLKEESSSVQSLKDEFTQRIADAER-KAQLSCKER 556

Query:   392 KTNDAELETLREEYHQRV---ATLE------RKVYALTKERDTLRREQNKKSDAAALLKE 442
                  E++ LREE   R+    TLE       ++  L +E + L ++Q + S+    L+ 
Sbjct:   557 DIAKKEIKGLREELASRLNSNETLELIKEKEEQIRELLEEGEKLSKQQLQHSNIIKKLRV 616

Query:   443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQ-VEENKVESIKR 501
             K+   +  +A+  +  K+Q  +   ++++     E+E++ +  + KL  V E + + + +
Sbjct:   617 KERESDAQIAKQTKKLKEQEEELKLLQQVMDGKEEIEKQHRENIKKLNAVVERQEKELSK 676

Query:   502 DKTATEKL------LQETIEKHQVELGEQKDYYTXXXXXXXXXXXXXXXXXXXXXXXXXX 555
              +T++E+L      LQ  ++    EL E                                
Sbjct:   677 LQTSSEELQEKSRSLQAALDSSYKELAELHKANASKDSEAQELALSREVQAKEELSLALE 736

Query:   556 XXXXXXXXXXTMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615
                         L   + +LR  L R EQQ   +ED LR +I +LQ+R Q +E R +EL 
Sbjct:   737 KVQEDSRLQQEALANQVADLRVALQRAEQQQAKKEDYLREEISELQQRIQEAETRNQELS 796

Query:   616 TQVPESTRPLLRQIEAIQXXXXXXXXXXXXXXXSLNLRLQXXXXXXXXXXXXXXXVNERL 675
               V  +TRPLLRQIE +Q               +L+ RL                  E L
Sbjct:   797 QSVTSATRPLLRQIENLQATLGAQTASWEKLEKNLSDRLADAQAQLAVSVEKERSATEEL 856

Query:   676 SQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLE 735
                 ++I   E+Q S LR E+ +L   L+ ER R  +   +    + E +  +G   ++ 
Sbjct:   857 LAIRAQITSFESQASLLRQEKGRLQGQLDAERMRREKLEDDLSRERVELENLKGEYARVS 916

Query:   736 EEIKE--LRRKHKQELQEALMHRELLQQEIEREKTARVDLXXXXXXXXXXVSEKTPIARH 793
             E+ K+  L   ++ E+++  + +E  +  + +E     +            +  TP    
Sbjct:   917 EDSKKEKLLLTNQLEMEKMKVEQEKKKCYLAQEALKEKERKSLSLSVTDAPASSTPSLSR 976

Query:   794 TSAFENGXXXXXXXXXXXXXXMEESHFLQAXXXXXXXXXXRKNTVEPTMSPYYVKSMTPS 853
             +S+                   E+S  L              N  E         S    
Sbjct:   977 SSSVSGADHAGLPSSFFSQ--QEDS--LDHSFNTMTMSISGTNLYEAARLGG--GSSVIE 1030

Query:   854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDA 913
             + +S L+ +EGE+      +AS+E  R  ++EELV++T + +++ ++   +P ++ +L  
Sbjct:  1031 SLQSQLKLREGEITQLQMEIASLERSRTVMSEELVRLTNENDEMESKVKEIPRLKVQLKD 1090

Query:   914 LRRRHSAAXXXXXXXXXXXXXXRADIMDLKEMYREQVN-LLVNKIQ 958
             L +RH+                R D+ D+K MY+ Q++ LL N+ Q
Sbjct:  1091 LEQRHNTILQMYGEKAEEAEELRLDLEDVKNMYKLQIDELLKNQKQ 1136

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB\|G3V9T2 Tmf1 "Protein Tmf1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUW6 TMF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHB9 TMF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P82094 TMF1 "TATA element modulatory factor" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2684999 Tmf1 "TATA element modulatory factor 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0274785 DDB_G0274785 "TMF1-like protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SFP6 TMF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

FB\|FBgn0029912 CG4557 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WVL7	GOGC5_ARATH	No assigned EC number	0.6406	0.9576	0.9686	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00030370	hypothetical protein (975 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		967
pfam12325		121	pfam12325, TMF_TATA_bd, TATA element modulatory fa	3e-30
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-12
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	4e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-10
PRK05431		425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	1e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-09
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
pfam12329		74	pfam12329, TMF_DNA_bd, TATA element modulatory fac	1e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-07
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	7e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	4e-06
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	6e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	1e-05
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	1e-05
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	2e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	9e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-04
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	1e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-04
COG0172		429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	2e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-04
pfam13514		1118	pfam13514, AAA_27, AAA domain	3e-04
pfam13166		713	pfam13166, AAA_13, AAA domain	5e-04
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-04
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	6e-04
PRK10246		1047	PRK10246, PRK10246, exonuclease subunit SbcC; Prov	6e-04
TIGR03319		514	TIGR03319, RNase_Y, ribonuclease Y	8e-04
pfam00038		312	pfam00038, Filament, Intermediate filament protein	0.001
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
pfam02403		108	pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-t	0.002
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
COG3206		458	COG3206, GumC, Uncharacterized protein involved in	0.002
TIGR01843		423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
PRK10929		1109	PRK10929, PRK10929, putative mechanosensitive chan	0.002
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004

>gnl\|CDD\|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding	Back alignment and domain information

 Score =  115 bits (290), Expect = 3e-30
 Identities = 51/121 (42%), Positives = 74/121 (61%)

Query: 834 RKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ 893
            ++ V  + S             S LR+ EGELAS    LA +E+ RD   +E+VK+T +
Sbjct: 1   IRDIVSVSTSGAGPNVQLVERLSSTLRRLEGELASLKDELARLEAERDEARQEIVKLTEE 60

Query: 894 CEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953
            E+LR     +  ++ EL+ L +R+   LEL+GE+ E +EELRAD++DLKEMYREQV+ L
Sbjct: 61  NEELRELKKEIEELEKELEDLEQRYETTLELLGEKSERVEELRADVVDLKEMYREQVDQL 120

Query: 954 V 954
           V
Sbjct: 121 V 121

This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family. Length = 121

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA binding	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	Back alignment and domain information

>gnl\|CDD\|188306 TIGR03319, RNase_Y, ribonuclease Y	Back alignment and domain information

>gnl\|CDD\|200948 pfam00038, Filament, Intermediate filament protein	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|225747 COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>gnl\|CDD\|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		967
KOG4673		961	consensus Transcription factor TMF, TATA element m	100.0
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	99.96
PF12329		74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	99.56
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.12
PRK02224		880	chromosome segregation protein; Provisional	99.09
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.02
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.96
KOG4673		961	consensus Transcription factor TMF, TATA element m	98.89
PRK02224		880	chromosome segregation protein; Provisional	98.83
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.69
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.65
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.65
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.63
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.6
PRK03918		880	chromosome segregation protein; Provisional	98.52
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.32
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.31
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.13
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	98.0
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.93
PRK03918		880	chromosome segregation protein; Provisional	97.93
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.86
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.84
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.83
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.81
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.78
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.77
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.72
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.6
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.59
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.5
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.48
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.47
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.47
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.46
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.42
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.41
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.4
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.23
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.18
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.09
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.07
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.06
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.01
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.87
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.86
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.82
PRK04778		569	septation ring formation regulator EzrA; Provision	96.81
PF00038		312	Filament: Intermediate filament protein; InterPro:	96.78
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	96.72
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.71
KOG0971		1243	consensus Microtubule-associated protein dynactin	96.57
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	96.56
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.42
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.42
PRK11637		428	AmiB activator; Provisional	96.39
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.38
COG4942		420	Membrane-bound metallopeptidase [Cell division and	96.21
PRK01156		895	chromosome segregation protein; Provisional	96.11
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	96.1
PRK11637		428	AmiB activator; Provisional	96.07
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	96.03
PRK11281		1113	hypothetical protein; Provisional	96.03
PRK04863		1486	mukB cell division protein MukB; Provisional	96.03
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.0
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	95.87
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	95.77
PHA02562		562	46 endonuclease subunit; Provisional	95.61
COG4942		420	Membrane-bound metallopeptidase [Cell division and	95.49
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.47
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	95.26
PRK09039		343	hypothetical protein; Validated	95.13
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.88
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.85
PRK01156		895	chromosome segregation protein; Provisional	94.73
PF14662		193	CCDC155: Coiled-coil region of CCDC155	94.56
KOG0963		629	consensus Transcription factor/CCAAT displacement	94.25
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.06
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.0
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	93.95
KOG1003		205	consensus Actin filament-coating protein tropomyos	93.94
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.8
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.67
PRK04778		569	septation ring formation regulator EzrA; Provision	93.42
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	93.28
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	93.19
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	92.94
PRK09039		343	hypothetical protein; Validated	92.76
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	92.51
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.37
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.04
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.02
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	92.02
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	91.93
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	91.85
PHA02562		562	46 endonuclease subunit; Provisional	91.83
COG2433		652	Uncharacterized conserved protein [Function unknow	91.56
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	91.55
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	91.4
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.1
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	90.8
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.76
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.6
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	90.53
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.44
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	90.4
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.24
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	89.64
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	89.35
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	89.3
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	89.26
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	88.94
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	88.64
COG1842		225	PspA Phage shock protein A (IM30), suppresses sigm	88.04
PRK10929		1109	putative mechanosensitive channel protein; Provisi	88.0
KOG0018		1141	consensus Structural maintenance of chromosome pro	87.48
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.31
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	87.16
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	87.03
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	86.84
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	85.59
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	85.53
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	85.08
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	84.82
KOG1103		561	consensus Predicted coiled-coil protein [Function	84.68
KOG0249		916	consensus LAR-interacting protein and related prot	84.66
PRK10884		206	SH3 domain-containing protein; Provisional	84.33
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	84.17
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	83.82
PRK10929		1109	putative mechanosensitive channel protein; Provisi	83.69
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.95
PLN03229		762	acetyl-coenzyme A carboxylase carboxyl transferase	82.79
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.55
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	82.54
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	82.51
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	81.52
COG3074		79	Uncharacterized protein conserved in bacteria [Fun	81.21
KOG4807		593	consensus F-actin binding protein, regulates actin	80.7
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	80.26

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.9e-129  Score=1097.32  Aligned_cols=900  Identities=52%  Similarity=0.676  Sum_probs=701.8

Q ss_pred             Cccccc-cccCCCCCchhhhhhhhHHHHHhHHhhhhcccCcccccccCCCCCCCCCCCCcch-----------hhhhccc
Q 002095            1 MAWFSG-KVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWP-----------VMSFMGH   68 (967)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~   68 (967)
                      |+||+| |++||+|||+.|+||||+++||||.+|||+++||+++++.+..+.    ++.+||           ||+||||
T Consensus         1 MsWF~~Ak~sl~~~lDiq~~~~~~~~~~k~~p~~~~~~~Gg~d~s~~~~~~n----a~~~~Pp~a~tka~~~Pv~~~~~~   76 (961)
T KOG4673|consen    1 MSWFSGAKVSLGGFLDIQGAVNKFQESVKNIPKNFDNALGGDDKSDSAAEDN----ASSMWPPAADTKALFDPVMSFMGN   76 (961)
T ss_pred             CchhhhhhhhhcccccccccchhhhhcccCCcccCCcccCCCCccccccccc----CCCCCCCCCCcccccccHHHhccc
Confidence            999999 999999999999999999999999999999999999999988876    667787           9999999


Q ss_pred             CCCCCCCC-cCCCCCCCCCCCCCcccccccccccccccccccchhhhccCC---CCCCcCC-CCCcccccccchhccCCC
Q 002095           69 KSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKAS---PKTEKDD-EHPDTAENLDFVVSEHGK  143 (967)
Q Consensus        69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~  143 (967)
                      .+.+.|++ +.+--...|-+-+-|++..+     ++|-...+ ..++.-++   +..+-|+ ..|.+.+   .|+.++..
T Consensus        77 t~f~~P~~~~~~vvt~pPs~~~~peee~~-----S~~~g~~q-s~~~ds~~~~s~~~~a~~~~sP~~~e---~~~~vP~v  147 (961)
T KOG4673|consen   77 TSFEKPDTLEDSVVTEPPSQIEQPEEEAG-----SVKLGTEQ-SVSVDSNKETSVRREADQADSPEVTE---TVVLVPKV  147 (961)
T ss_pred             ccccCcccccccccccCCCcccCchhhcc-----cchhccch-hhhhhhhhhhcccccccCCCCCCCcc---ccCcCccc
Confidence            99999733 22222233333333332211     22222221 11111111   1112222 1222222   25555555


Q ss_pred             CCCCCCcccCCCCchhhhccCCCCccchhhhhhhccCCCCcccccccccCCCC-----------ccccccccccccccCc
Q 002095          144 VDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPF-----------EADQIEISSSLRDESD  212 (967)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  212 (967)
                      .+..|+++.-..++-..+..+++       ++.++-...-..++.+..-+.|.           +-+.-|+++..+.+-.
T Consensus       148 ~~~~Se~~lE~is~ts~qt~~~~-------~~~~~l~P~~~ps~p~S~~s~~~~~tSd~ee~d~Ed~~~e~~~~~r~~t~  220 (961)
T KOG4673|consen  148 DEPQSEILLEEISETSLQTPESS-------GYKTSLQPNEKPSMPASQDSQPEQPTSDAEESDPEDSEAEEVTVERKDTV  220 (961)
T ss_pred             chhhhHHHHHHHHhhhccCcccc-------ccccccCCCCCCCCCccccccCCCCcchhhhcCcccchhhhhhhhhcccc
Confidence            55555554222222222211111       01111000000001111111111           1123344444444444


Q ss_pred             ccccccccccccccccchhHHhhhhhhhhccCCCcccccchhhhhccC---CCCCCCccchhhhhhhhhhcccccCCCCc
Q 002095          213 NVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVG---TESSDSQSVSAEETERVRELLSSSASSPK  289 (967)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (967)
                      ...+.....++.++.++....++.+.....+.|+..||..+|+.+..|   +.+.++|+..++   ..+.+.+++|.+||
T Consensus       221 hs~~s~~~mk~~~~~~~~~a~~~~n~~~d~~~Ss~~FE~i~~~~~~~gkSr~~s~v~~~d~~~---~s~~s~~eiiin~n  297 (961)
T KOG4673|consen  221 HSPVSDGQMKITYMDETTNAQEILNENLDGRTSSKNFEVIPDINHVNGKSRIESPVAHPDLIF---ESDGSPYEIIINKN  297 (961)
T ss_pred             cCccchhhHHHHHHHhhhhhhhhhccccccccccchhhhchhhhhccCCCCCCCCCCChhhhc---cCCCCcceeecCCC
Confidence            444555667789999999999999999999999999999999999884   455555555444   44566788888887


Q ss_pred             ccccc------cccCCCCCCCCccchhhhhhhccccCcccccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 002095          290 AVSET------VCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAAR  363 (967)
Q Consensus       290 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~kl~~~~~~~~~~l~~~~r  363 (967)
                      +.|++      ++++|++.-+......+-.         . +++-++..|.+++.+.+.||+|++++|+||+.+|+  +|
T Consensus       298 g~SsT~e~ser~s~~v~~el~~~~~~~e~~---------e-s~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~le--aR  365 (961)
T KOG4673|consen  298 GRSSTDEISERISDFVSRELDSRLDTSELN---------E-SQRSSSATNVSDSDDVQLELDKTKKEIKMLNNALE--AR  365 (961)
T ss_pred             CCccccccccccchHHHHHhccchhhHHhh---------h-ccCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH--HH
Confidence            76655      5566666655554443321         1 45557888888886669999999999999999999  56


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHH----
Q 002095          364 QAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQN--KKSDAA----  437 (967)
Q Consensus       364 ~~~~k~~~~a~L~e~n~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~aLErKlq~L~KErD~LKke~~--k~s~~~----  437 (967)
                      ++|.+++++++++-.++++....+.++++++++.+++|+++|+|||++||+|||++|||||+||++.+  +...+.    
T Consensus       366 eaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~  445 (961)
T KOG4673|consen  366 EAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK  445 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence            66777788888888888888888999999999999999999999999999999999999999999988  443333    


Q ss_pred             HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 002095          438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG---LVTKLQVEENKVESIKRDKTATEKLLQETI  514 (967)
Q Consensus       438 a~LkEKDE~IaqLmEEGEKLSKkELq~sniIKKLRakikElEee~k~---Lk~KlE~e~~klesikr~~~a~EK~lqe~i  514 (967)
                      +.|+|||++|++||+|||||||++|++++||||||+|+++.+.-...   +-.+++.+.+++..+.+.++++||.+++.|
T Consensus       446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I  525 (961)
T KOG4673|consen  446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI  525 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999998843333   446889999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095          515 EKHQVELGEQKDYYTN--ALAAAKEAEELAEARANNEARAEL--ESRLR--EAGERETMLVQALEELRQTLSRTEQQAVF  588 (967)
Q Consensus       515 ek~q~eL~a~k~~~~~--~L~~AKe~e~lAE~ra~~Ea~~~L--e~~lk--Eaeere~~L~qqIedLRe~L~Raeq~a~~  588 (967)
                      .+++.++..++.+|.+  .+..+.++..+|+-+++..++-.|  +.+++  ++.++..+|.++|.|||.+|+++++.+++
T Consensus       526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar  605 (961)
T KOG4673|consen  526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR  605 (961)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986  555667767778888888887655  44566  78888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095          589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE  668 (967)
Q Consensus       589 rEeeLR~EIs~Le~RLEeaEsRaEELSssvseATrPLLRQIEtLQ~q~asqsenWe~iE~sL~~RL~elE~kl~~A~erE  668 (967)
                      ||++||+||.+|++||+++|.|+++++++||.+|||||||||+||.++..++.+|+..|++|+.||.+.+..++.++.+|
T Consensus       606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~e  685 (961)
T KOG4673|consen  606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEE  685 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002095          669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQE  748 (967)
Q Consensus       669 r~~~ekl~~~~~ri~~LE~els~lr~E~~~L~~qLE~Er~r~~~~r~e~~aakee~~~le~r~~~LEeeL~eLr~k~~~e  748 (967)
                      +.....+..++-.+-....+++++|+++.+|+++|+.+++|+.+++++|.+++++++.+++++.+|+.++..++.+++++
T Consensus       686 qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~  765 (961)
T KOG4673|consen  686 QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE  765 (961)
T ss_pred             hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887777777777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHhhh-hhhhhccccCCccccccccccCCCccccCCCCCCCCcchhhhhhccccCC
Q 002095          749 LQEALMHRELLQQEIEREKTARVDLERRA-SAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDS  827 (967)
Q Consensus       749 lqea~~~~~~Lqq~lE~Ek~~r~elE~~~-~~~s~~~s~q~~~~~~~s~f~~~s~tr~lSs~sS~gs~~~s~~lq~s~d~  827 (967)
                      ++....+.++.++.++.++..+.++++.. +.++                     ++.+|..+|+++.+ ..+.+.+|. 
T Consensus       766 lq~~ll~ve~~~k~~e~~~~~~~~lers~a~i~S---------------------sp~~s~~~SgSnee-~ag~~~~f~-  822 (961)
T KOG4673|consen  766 LQEVLLHVELIQKDLEREKASRLDLERSTARINS---------------------SPVSSQLPSGSNEE-IAGQNSAFE-  822 (961)
T ss_pred             hhHHHHHHHHHHHHhhhCHHHHhhcccccCccCC---------------------CCchhhCCCCchHh-Hhcccchhh-
Confidence            99998888888888887777666666531 1111                     22222233333222 222223322 


Q ss_pred             CCcccccCCCC--CCCCCcccccCCCh----h-HHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002095          828 SDSLSDRKNTV--EPTMSPYYVKSMTP----S-AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE  900 (967)
Q Consensus       828 sd~~s~~~~~g--~~s~S~~~~~s~tp----S-~LqA~LRrrEGEla~Lq~ELarLes~Rd~L~eELVrLt~EnEel~~e  900 (967)
                      .|..+...++|  +.+|+||++...+|    + ++++.|||||||++||||+|++|+++|+.|++|||+||++||.|+.+
T Consensus       823 ~dd~s~~~s~gqq~~~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek  902 (961)
T KOG4673|consen  823 NDDFSEKRSMGQQEATMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREK  902 (961)
T ss_pred             ccchhhhhcCCCCCcccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344444555  44677887665554    3 89999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002095          901 AAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKIQ  958 (967)
Q Consensus       901 ~~~v~~Le~eleeLqqRYeTlLELLGEKsEeVEELraDV~DVKeMYR~QIdeLlkQi~  958 (967)
                      ++++++++.+|++|++||+|+|||||||+|+.||||+||.|||+|||.|||+||.++.
T Consensus       903 ~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl~~~~  960 (961)
T KOG4673|consen  903 ADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDELLNKIQ  960 (961)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999998763

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		967
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-18
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-16
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-14
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-09
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-08
2dq0_A		455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	1e-07
1ses_A		421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	5e-06
2dq3_A		425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	1e-05
3err_A		536	Fusion protein of microtubule binding domain from	2e-05
1wle_A		501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	2e-05
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	1e-04
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	4e-04
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	2e-04
3qne_A		485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	3e-04
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 92.6 bits (229), Expect = 4e-19
 Identities = 83/660 (12%), Positives = 196/660 (29%), Gaps = 172/660 (26%)

Query: 344 LEKLKREM--KMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETL 401
            +        K ++   +    + +   D I    +       +   L  K         
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQE------- 76

Query: 402 REEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQ 461
            E   + V  + R  Y        ++ EQ + S    +  E+    +++  + +  +K  
Sbjct: 77  -EMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAKYN 130

Query: 462 AAQEAQIRKLRAQIRELEEEKK---------GLVTKLQVEENKVESIKRDKT--ATEKLL 510
            ++     KLR  + EL   K          G                  KT  A +  L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------------------KTWVALDVCL 172

Query: 511 QETIEKH---QVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETM 567
              ++     ++       ++ N L      E + E       +  ++       +  + 
Sbjct: 173 SYKVQCKMDFKI-------FWLN-LKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSN 222

Query: 568 LVQALEELRQTLSRTEQQAVFREDML-RRDIEDLQRRYQASERRCEELVT--------QV 618
           +   +  ++  L R  +   +   +L   ++++  + + A    C+ L+T         +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 619 PESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQE--AEAKAAASEERERSVN---- 672
             +T   +         T    E  + + + L+ R Q+   E           + N    
Sbjct: 282 SAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVL---------TTNPRRL 330

Query: 673 ----ERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEY--LA-----AK 721
               E +   L+  +  +  ++C +     +  SL       AE R+ +  L+     A 
Sbjct: 331 SIIAESIRDGLATWDNWK-HVNCDKLTTI-IESSLNV--LEPAEYRKMFDRLSVFPPSAH 386

Query: 722 EEADT-----QEGRANQLEEEIKELRR-----KHKQELQEALMHREL-LQQEIEREKTA- 769
                      +   + +   + +L +     K  +E   ++    L L+ ++E E    
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 770 RVDLERRASAESAAVSEKTP----------IARHTSAFENG---SLSRKLSSASSLGSME 816
           R  ++     ++    +  P          I  H    E+    +L R +          
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--------FL 498

Query: 817 ESHFLQASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASM 876
           +  FL+  +    +  +   ++  T+                      +L  Y   +   
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQ---------------------QLKFYKPYICDN 537

Query: 877 ESIRDSLAEELVKMTAQCEK--LRAEAAILPGIQAELDALRRRHSAALELMGERDEELEE 934
           +   + L   ++    + E+  + ++           D LR      + LM E +   EE
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSK---------YTDLLR------IALMAEDEAIFEE 582

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455	Back alignment and structure

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421	Back alignment and structure

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425	Back alignment and structure

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536	Back alignment and structure

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501	Back alignment and structure

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575	Back alignment and structure

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		967
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.19
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.98
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.81
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.66
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.76
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	96.46
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	95.97
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.86
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	95.86
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	95.67
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.51
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	94.7
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.0
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.61
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.26
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.2
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.83
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	87.64
3mq7_A		121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.63
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	86.75
3mq7_A		121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.3
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	85.55
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	85.41
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	84.71
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	84.48
3bas_A		89	Myosin heavy chain, striated muscle/general contro	80.55
3mq9_A		471	Bone marrow stromal antigen 2 fused to maltose-BI	80.5
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	80.22

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

Probab=98.19  E-value=0.0076  Score=60.76  Aligned_cols=14  Identities=14%  Similarity=0.472  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHH
Q 002095          411 TLERKVYALTKERD  424 (967)
Q Consensus       411 aLErKlq~L~KErD  424 (967)
                      ++.+|+..+..+.+
T Consensus         3 ~~~~~~~~l~~~~~   16 (284)
T 1c1g_A            3 AIKKKMQMLKLDKE   16 (284)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHH
Confidence            34444444444444

PyMOL of 1c1g

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A	Back alignment and structure

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00